BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780476|ref|YP_003064889.1| two component response
regulator [Candidatus Liberibacter asiaticus str. psy62]
         (123 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 232

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 71/124 (57%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++V+D    ++L R  +E SG+  +   +G +AL+L ++ +PD++I+DI L  I
Sbjct: 1   MAKEKILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ +  +     ++IPVI +TA   + D+    + G + YI+KP S    +  +K  
Sbjct: 61  DGLEVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAV 120

Query: 120 IGEA 123
           +  A
Sbjct: 121 LRRA 124


>gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 231

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 72/121 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IV+D E   +L +  ++  GY      NG EAL+L R+ K D+I++D+ L EI GL
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+ + E  +IPV+ +TA   + D+    + G + YI+KP S+   M  +K  +  
Sbjct: 64  EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 228

 Score =  184 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   K+++VED++   +L +  +  +G+      +G   L LA   KPD++++D+ +  +
Sbjct: 1   MSAHKILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLMMPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ +QIK +S L  IPVI +TA   + D+    + G + YI KP S    +  IK  
Sbjct: 61  DGLEVCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAV 120

Query: 120 IGEA 123
           +  A
Sbjct: 121 LRRA 124


>gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 231

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 72/121 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IV+D E   +L +  ++  GY      NG EAL++ R+ K D+I++D+ L EI GL
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+ + E  +IPV+ +TA   + D+    + G + YI+KP S+   M  +K  +  
Sbjct: 64  EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 231

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 72/121 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IV+D E   +L +  ++  GY      NG EAL++ R+ K D+I++D+ L EI GL
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+ + E  +IPV+ +TA   + D+    + G + YI+KP S+   M  +K  +  
Sbjct: 64  EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 232

 Score =  183 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + K++IV+D E   +L R  +E  GY      NG EALE+A++ KP +I++D+ L ++
Sbjct: 1   MSQDKILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+I++D+ +   P+I +TA   + D+    + G + YI+KP S+   +  IK  
Sbjct: 61  DGYDVCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 231

 Score =  183 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 72/121 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IV+D E   +L +  ++  GY      NG EAL++ R+ K D+I++D+ L EI GL
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+ + E  +IPV+ +TA   + D+    + G + YI+KP S+   M  +K  +  
Sbjct: 64  EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 244

 Score =  183 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 68/123 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D  +  +     +E +GY  +   +G  AL+ AR  +PD+I++DI L  + 
Sbjct: 1   MARKILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++ +++    P++ +TA   + D+    + G + Y++KP      +  ++  I
Sbjct: 61  GLEVCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALI 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 231

 Score =  183 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 72/121 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IV+D E   +L +  ++  GY      NG EAL++ R+ K D+I++D+ L EI GL
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPEIDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+ + E  +IPV+ +TA   + D+    + G + YI+KP S+   M  +K  +  
Sbjct: 64  EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  183 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D    +KL +  +E  G+      +G  ALE   +H PD+I++D+ L ++ 
Sbjct: 2   MSKKVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLPKMD 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ KQI++++    +P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 62  GLEVCKQIRKEN--SHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAIL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 231

 Score =  183 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 71/121 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IV+D E   +L +  ++  GY      NG EAL + R+ K D+I++D+ L EI GL
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLMLPEIDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+ + E  +IPV+ +TA   + D+    + G + YI+KP S+   M  +K  +  
Sbjct: 64  EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 233

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 69/123 (56%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D    +K+ RD +E +G+  +   +G  AL LARQ  P ++++D+ L  + 
Sbjct: 1   MSRTILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+ +++D     +P+I +TA   + D     + G + YI+KP S    +  ++  +
Sbjct: 61  GLDVTRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 231

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 71/121 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IV+D E   +L +  ++  GY      NG EAL + R+ K D+I++D+ L EI GL
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPEIDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+ + E  +IPV+ +TA   + D+    + G + YI+KP S+   M  +K  +  
Sbjct: 64  EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
 gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
          Length = 232

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 73/121 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IV+D E   +L +  +E +GY  +   NG+EAL +A++ KPD+I++D+ L  + G
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++D+     P+I +TA   + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 63  YEVCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 231

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +   +L +  +E  G+  L   +G   L++AR   PD+II+DI L  + G
Sbjct: 1   MPKILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + + ++   + IP+I ++A   + D+    + G + YI+KP S    +  +K  + 
Sbjct: 61  LSVCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 239

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +  ++L R  +E  GY  L   +G + LELAR  +PD+I++D+ L  ++G
Sbjct: 1   MPKILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVMLPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++  D+  + IPVI ++A A + D     + G + YI+KP S    +  IK  + 
Sbjct: 61  LEVCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain
           [Syntrophus aciditrophicus SB]
          Length = 245

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 72/121 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+D +  ++L    +E  G+   Q  +G EAL+  R +KPD++I+D+ L  +SGL
Sbjct: 15  KRILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSGL 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I +Q++ + E + +PVI +TA     D+    + G + YI+KP ++   +  ++  +  
Sbjct: 75  DICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLRR 134

Query: 123 A 123
           +
Sbjct: 135 S 135


>gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 237

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED E   ++ +  +E  GY      NGME  ++  Q++PD+II+D+ + +  
Sbjct: 1   MKKRILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA   + D       G + Y++KP S    +  ++  +
Sbjct: 61  GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+      +   AL++  +  PD++++D      S
Sbjct: 13  MTARILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWMFPGGS 72

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++++D   + IPVI +TA   + D+ +  + G + YI+KP S    +  IK  +
Sbjct: 73  GIQLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVM 132

Query: 121 GEA 123
             A
Sbjct: 133 RRA 135


>gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. 230613]
          Length = 232

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 74/121 (61%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IV+D E   +L +  +E +GY  +   NG+EAL +A++ KPD+I++D+ L  + G
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++D+ +   P+I +TA   + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 63  YEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
 gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
          Length = 232

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 74/121 (61%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IV+D E   +L +  +E +GY  +   NG+EAL +A++ KPD+I++D+ L  + G
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++D+ +   P+I +TA   + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 63  YEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
 gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
          Length = 232

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 74/121 (61%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IV+D E   +L +  +E +GY  +   NG+EAL +A++ KPD+I++D+ L  + G
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++D+ +   P+I +TA   + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 63  YEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 228

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED EL  +L R  +E  GY      +G EAL   R + PD++I+DI L +  
Sbjct: 1   MASTILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+  S     P+I +TA   + D       G + Y+ KP S    +  +K  +
Sbjct: 61  GWTVCREIRAMS---NAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator
           [Nitrosococcus watsonii C-113]
 gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus watsonii C-113]
          Length = 231

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D     ++    +   GY      +G +A +   + +PD+I++D  L  IS
Sbjct: 3   MAATILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQINEFRPDLILLDWMLPGIS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +++K +   +E+PVI +TA   + D+ R    G + YI+KP S    +  IK  +
Sbjct: 63  GVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIKAVL 122

Query: 121 GEA 123
             +
Sbjct: 123 RRS 125


>gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 230

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 70/120 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+   ++L +  + +SGY  +   +G +AL+ AR+  PD+I++D+ L  I GLE
Sbjct: 5   KILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKENPDLILLDLMLPGIDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K++   Q IPVI +TA   + D     + G + YI KP S    +  +K  +  +
Sbjct: 65  VCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAVLRRS 124


>gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
 gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
          Length = 229

 Score =  180 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     ++ + ++E  G+      +   AL +  +  PD+I++D      S
Sbjct: 1   MTAKILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMISEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++++D   + IP+I +TA   + D+ R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
 gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
          Length = 232

 Score =  180 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED++  ++L R  +E  G+      +G  AL   ++  PD+II+D+ L  + G
Sbjct: 1   MAKILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++  +    +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  LELCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 235

 Score =  180 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 72/123 (58%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED    ++L R  +E  GY  + T NG E LE  R+  PD++++D+ L +I 
Sbjct: 1   MTHTILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K+IK D  L+ IP+I +TA + + D+    + G + YI+KP S+   +  IK  +
Sbjct: 61  GIDVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 231

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 66/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D E   KL    +   G+  L   +G +ALE+ARQH+PDVII+D+ L  + G  +
Sbjct: 4   VLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFTV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++ D  L+EIPVI ++A   + D+ R    G + Y++KP S       +K  +  
Sbjct: 64  CELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRR 121


>gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrosococcus oceani ATCC 19707]
 gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
 gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
 gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
          Length = 229

 Score =  179 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  +++V+D     ++    +   GY      +G +A +   +  PD+I++D  L  IS
Sbjct: 1   MVATILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRINESHPDLILLDWMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +++K +   +E+PVI +TA   + D+ R    G + YI+KP S +  +  IK  +
Sbjct: 61  GVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 231

 Score =  179 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E   +L +  +E   Y      NG +ALEL R   PD++I+D+ L ++SGL+
Sbjct: 2   KILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPDMSGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + I+ DS ++ IP+I VTA     D     + G + Y++KP S  + +  I+  +  
Sbjct: 62  ICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRR 120


>gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 240

 Score =  179 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 67/119 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      + R  +E  GY   +  +G EAL +  + KPD++++D  L  +SG+EI
Sbjct: 14  VLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPSLSGIEI 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +QI+     +E+P+I +TA   +GD+ R    G + Y++KP SL   M  ++  +  A
Sbjct: 74  CRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRA 132


>gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 230

 Score =  179 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D+   ++L +  ++  GY      NG EA++ A   KPD+I++D+ + EI G
Sbjct: 1   MSKILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +QI+  S    +P+I +TA     D+    + G + YI+KP +    +  IK  + 
Sbjct: 61  LEVCRQIRMHSR---VPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 234

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 73/122 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+++ED    ++L R  +E +GY  + + NG E L+ A + KPD++I+D+ L ++ 
Sbjct: 1   MAHTVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAFEGKPDLVILDLMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K +K++ E + IP+I +TA + + D+    + G + YI+KP S+   +  IK  +
Sbjct: 61  GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 234

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 74/122 (60%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+++ED    ++L R  +E +GY  + + NG E L+ A + KPD++I+D+ L ++ 
Sbjct: 1   MAHRVLVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEKPDLVILDLMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K +K++ E + IP+I +TA + + D+    + G + YI+KP S+   +  IK  +
Sbjct: 61  GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D    +K+ RD +E +G+  +   +G  AL LARQ  P +I++D+ L  + 
Sbjct: 1   MKRTILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+ +++D     +P+I +TA   + D     + G + YI+KP S    +  ++  +
Sbjct: 61  GLDVTRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 233

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 67/123 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+IVED    + L R  +E  GY   +  +G EA+ L  + +PDV+I+D  L  +S
Sbjct: 1   MKSHVLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPSLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +Q++     +++P++ +TA   + D  R    G + Y+SKP S+   +  +K  +
Sbjct: 61  GIEVCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 237

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED E   ++ +  +E   Y      NG E  +L   H+PD+II+D+ + +  
Sbjct: 1   MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA   + D       G + Y++KP S    +  ++  +
Sbjct: 61  GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 234

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 73/122 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+++ED    ++L R  +E +GY  + + NG E L+ A + KPD++I+D+ L ++ 
Sbjct: 1   MAHTVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K +K++ E + IP+I +TA + + D+    + G + YI+KP S+   +  IK  +
Sbjct: 61  GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 248

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K V+IVEDN     + R+ +E  GY      NG E L  AR H+PD++++D+ +  + G
Sbjct: 22  MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  ++ +     +++PVI +TA   + D+    + G + Y++KP S++  +  ++  + 
Sbjct: 82  LEFLRRFRA---TEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLR 138

Query: 122 EA 123
            +
Sbjct: 139 RS 140


>gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 234

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 73/122 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+++ED    ++L R  +E +GY  + + NG E L+ A + KPD++I+D+ L ++ 
Sbjct: 1   MAHTVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K +K++ E + IP+I +TA + + D+    + G + YI+KP S+   +  IK  +
Sbjct: 61  GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510]
 gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510]
          Length = 248

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 67/119 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED    + L +  +E  G+      +G EAL  A +  P ++++D  L  +SGLE+
Sbjct: 23  VLIVEDEADILTLLKYNLEKEGFRVATASDGEEALLAAGEQTPHIVLLDWMLPLMSGLEV 82

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +Q++ +++ ++IP+I +TA   +GD  R    G + YI+KP S +  +  ++  +  A
Sbjct: 83  CRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLRRA 141


>gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 231

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED E  + L    +   G+       G + +E AR+  PD++I+D+ L  + 
Sbjct: 1   MNKNILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEHPDLMILDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + +K+D EL++IP++ +TA   + D  +  + G   Y++KP S  + +  +K  +
Sbjct: 61  GLEVCETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D +  + + +  ++  GY  ++  +G EA+ LA    PD+I++DI L ++ 
Sbjct: 1   MSKKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++++       P++ +TA   + D+    + G + YI+KP S    M  +K  +
Sbjct: 61  GFTVCRKLRQSI---STPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 237

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED E   ++ +  +E   Y      NG E  +L   H+PD+II+D+ + +  
Sbjct: 1   MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA   + D       G + Y++KP S    +  ++  +
Sbjct: 61  GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 237

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED E   ++ +  +E   Y      NG E  +L   H+PD+II+D+ + +  
Sbjct: 1   MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA   + D       G + Y++KP S    +  ++  +
Sbjct: 61  GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI]
 gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 357

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++ R  +E  G+   +  +G EAL L    K D++I+D+ +  + G  
Sbjct: 128 KILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLMMPGVDGWS 187

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++++      +P+I +TA   + D     + G + Y+ KP S    +  +K  +  +
Sbjct: 188 VCREVRK---TTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRS 244


>gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
 gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
          Length = 235

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  +++ ED+   +    D +E+ GY  +   +G EAL+L + +  D++++DI +   S
Sbjct: 1   MMAHILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIMMPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+   E  +IP+I +TA   + D+    + G + YI+KP  +   +  I   +
Sbjct: 61  GYDVCREIRSTDE--DIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 229

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+      +   ALE+  +  PD+I++D      S
Sbjct: 1   MTARILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEMLSEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++++D   ++IP+I +TA   + D+ R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
 gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
          Length = 234

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 67/119 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED    + L +  +E  G+  +   +G EAL LA +  P ++++D  L  +SGLE+
Sbjct: 9   ILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPLMSGLEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +Q++ + + ++ PVI +TA   + D+ R    G + YI+KP S +  +  ++  +  A
Sbjct: 69  CRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRRA 127


>gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 277

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    ++    ++ +GY+  +  +G  AL+ A  H+PD++++D+ L  + GLE
Sbjct: 21  RILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAHRPDLVVLDLMLPGMDGLE 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E+     +PV+ +TA   + D     + G + Y++KP S    +  ++  +  A
Sbjct: 81  VCRRLRENGP---VPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRRA 137


>gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 229

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+      +   AL++  +  PD++++D      S
Sbjct: 1   MTARILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDMLTEPYPDLVLLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++++D   + IP+I +TA   + D+ R  + G + +I+KP S    +  IK  +
Sbjct: 61  GIQLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVM 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 237

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED E   ++ +  +E   Y      NG E  +L   H+PD+II+D+ + +  
Sbjct: 1   MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA   + D       G + Y++KP S    +  ++  +
Sbjct: 61  GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124]
 gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124]
          Length = 235

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D      + +  +   GY  +   +G EALE     KPD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++       P+I ++A   + D+    + G + Y++KP S    +  IK ++ 
Sbjct: 61  LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
 gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
          Length = 235

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D      + +  +   GY  +   +G EALE     KPD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++       P+I ++A   + D+    + G + Y++KP S    +  IK ++ 
Sbjct: 61  LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 231

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D E   +L R  +E  G+      +G EA++ A+   P +II+D+ L ++ G ++
Sbjct: 6   ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLMLPKLDGWDV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++++     E+P+I +TA   + D+    + G + Y++KP S    +  +K  +  A
Sbjct: 66  CREVRK---FSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRA 121


>gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 235

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I +D    ++L    +  +G+   +  +G +A+ +    +PD+II+D  +  +S
Sbjct: 2   MNAKILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPHMS 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +  +  +E +++PVI ++A   +GD       G + YI+KP S    +  +K  +
Sbjct: 62  GIEVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALL 121

Query: 121 GEA 123
             A
Sbjct: 122 RRA 124


>gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 229

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++VED     ++ + ++E SGY  ++  +   ALE   +  PD+I++D  L   S
Sbjct: 1   MAKRVLLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVVEPYPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++K+    ++IP+I VTA   + D+ R    G + Y++KP S    +  IK  I
Sbjct: 61  GVQLAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 3502]
 gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 232

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 73/121 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IV+D E   +L +  +E + Y  +   NG+EAL +A++ KPD+I++D+ L  + G
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++D+ +   P+I +TA   + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 63  YEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus thermophilus ND03]
          Length = 235

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D      + +  +   GY  +   +G EALE     KPD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++       P+I ++A   + D+    + G + Y++KP S    +  IK ++ 
Sbjct: 61  LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 228

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 69/120 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED E   ++  +     GY  +   +G +A++LA    PD+II+D+ L ++ G E
Sbjct: 4   RILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLMLPKMDGWE 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E+ EL+ +PVI +TA   + D     + G + Y+ KP S+   M  ++ ++  +
Sbjct: 64  VCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRRS 123


>gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 232

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    +L R  +   GY      +G E LE   Q KPD++++D+ +  + GLE
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPRMDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   L   PV+ +TA     D+    + G + Y+ KP      +  IK  +  
Sbjct: 65  VCRRIRK---LGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120


>gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D +  + + +  ++  GY  ++  +G EA+ LA    PD+I++DI L ++ 
Sbjct: 1   MSKKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++++       P++ +TA   + D+    + G + YI+KP S    M  +K  +
Sbjct: 61  GFTVCRKLRQSI---STPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 229

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D +  +K  +  +E  GY  L   +G EAL +  +  PD+I++D+ L ++ G
Sbjct: 1   MPRVLVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEESPDLIVLDLMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I++     ++P++ +TA     D+    + G + Y++KP +       +K  + 
Sbjct: 61  FEVCRNIRK---TSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
 gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
          Length = 245

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IV+D+E   +L    +    Y      +G EAL+L  ++ PD++++D+ L  +
Sbjct: 1   MSKNNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++  +I++       P+I ++A     D+    K G + YI KP   +  +  +   
Sbjct: 61  DGYQVCTEIRK---TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGAL 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
 gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
          Length = 236

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D      + +  +   GY  +   +G EALE      PD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAENPDLVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++       P+I ++A   + D+    + G + Y++KP S    +  IK ++ 
Sbjct: 61  LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 231

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 68/121 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED +  ++L R  +E  G+  ++  +G  ALE+    + D++++DI L  + G
Sbjct: 1   MARILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++++   ++IPVI ++A   + D     + G + YI+KP S+   +  +K  + 
Sbjct: 61  LTVCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus LMG 18311]
          Length = 235

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D      + +  +   GY  +   +G EALE     KPD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++       P+I ++A   + D+    + G + Y++KP S    +  IK ++ 
Sbjct: 61  LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
          Length = 249

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVED      + R  +E  G+   +  +G EAL    + +PD++++D  L  +SG+E
Sbjct: 23  TVLIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRLSEVQPDLVLLDWMLPGLSGIE 82

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QI+     +++P+I VTA     D  R    G + YI+KP ++      I+  +  A
Sbjct: 83  VCRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRRA 142


>gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 235

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    ++L +  +E   +  +   +G E L LA+Q  PD+II+D+ L ++ G
Sbjct: 1   MAKILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEPPDLIILDVMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + ++       +P++ V+A     D     + G + YI+KP S       +K  + 
Sbjct: 61  LEVCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 67/121 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED +   +L +  +E  G+  +Q  NG  AL++A+   PD+I++DI L    G
Sbjct: 1   MPKILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSEVPDIILLDIMLPGQDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + + +D+  + IP+I ++A   + D+    + G + YI+KP S    +  IK  + 
Sbjct: 61  LSVCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  176 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D      L R  +E  G+  L+  +G + L++ R+  PD++I+D+ + E+ G 
Sbjct: 7   RRILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPEMDGW 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++E     +IPV+ +TA     D     + G + Y++KP ++      I+  +  
Sbjct: 67  EVCRRLRE---FSQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRR 123


>gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 229

 Score =  176 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  GY  +   +   AL++  +  PD++++D      S
Sbjct: 1   MTARILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDMLTEPYPDLVLLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++++D   + IP+I +TA   + D+ R  + G + +++KP S    +  IK  +
Sbjct: 61  GIQLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVM 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 235

 Score =  176 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 71/123 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED    ++L R  +E  GY  + T NG   LE  ++  PD++++D+ L +I 
Sbjct: 1   MAHTILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++K D  L+ IP+I +TA + + D+    + G + YI+KP S+   +  IK  +
Sbjct: 61  GIDVCKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 240

 Score =  176 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 73/122 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+++ED    ++L R  +E +GY  + + NG E LE A + KPD++I+D+ L ++ 
Sbjct: 1   MPYTVLVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K +K++ + + IP+I +TA + + D+    + G + YI+KP S+   +  IK  +
Sbjct: 61  GLEICKVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  176 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IV+D+   ++  +D +    +  L   NG EAL+LA Q  PD++++D+ +  + 
Sbjct: 1   MKPKVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+  ++    EL +IP+I +TA   + D+ R  + G + Y++KP S +     I+  +
Sbjct: 61  GWEVCSRL---HELSDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAIL 117

Query: 121 GEA 123
             A
Sbjct: 118 ARA 120


>gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 237

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+    +L +  +E  G+     R+G  ALE  +  +PD+I++D+ L  + GLE
Sbjct: 2   KILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQQPDLIVLDLMLPGLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +I++   +++  ++ +TA   + D       G + Y+ KP S    +  I+  +  +
Sbjct: 62  VCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALLRRS 121


>gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 236

 Score =  176 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++V+D +  ++L R  +E  GY  +   +G  ALE   + KPD+I++DI L  +
Sbjct: 1   MSKPKILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIMLPGV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ + ++ D E Q IP+I +TA   + D+    + G + Y++KP S    +  IK  
Sbjct: 61  DGLEVCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKAR 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
 gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
          Length = 236

 Score =  176 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D +    + +  +E  G+      +G EA+E  ++ +PD+I++DI L    
Sbjct: 1   MDKRILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     +IP+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKS---YDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 68/121 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED+ +  +L    +E  GY  +    G +ALEL  + KPD++++D+ L E+ G
Sbjct: 1   MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ K+I+ + E   IP+I ++A     D     + G + YI+KP S    +  IK  + 
Sbjct: 61  LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120

Query: 122 E 122
           E
Sbjct: 121 E 121


>gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M    +++V+D      L R  +E +GY+     NG EALEL    +PD++I+D+ +  +
Sbjct: 1   MAATHILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELISSRQPDLVILDVMMPHL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G    ++I++      +P+I +TA   + D  +    G + Y+ KP S +  +  ++  
Sbjct: 61  DGFSTCERIRQ---FSSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAV 117

Query: 120 IGEA 123
           +  A
Sbjct: 118 LRRA 121


>gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 238

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   G+  +   +G E L    +  PD++I+D+ L +I G
Sbjct: 1   MKKILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAFHEKNPDLVILDLMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I++      +P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVCREIRK---TSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 232

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    +L R  +   GY      +G E LE     KPD++++D+ +  + GLE
Sbjct: 5   KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++       PV+ +TA     D+    + G + Y+ KP      +  IK  +  
Sbjct: 65  VCRRIRKAG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120


>gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus]
          Length = 235

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D      + +  +   GY  +   +G EALE     KPD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI K+I++       P+I ++A   + D+    + G + Y++KP S    +  IK ++ 
Sbjct: 61  LEIVKEIRK---TSHTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 232

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    +L R  +   GY      +G E LE   Q KPD++++D+ + ++ GLE
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMPKMDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++       PV+ +TA     D+    + G + Y+ KP      +  IK  +  
Sbjct: 65  VCRRIRKAG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120


>gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 225

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED     +L R  +E  G+  L+  +G EAL LARQH PD++++D+ +    
Sbjct: 1   MSQQILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMPGPD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI + +   +E   IPV+ +TA   + D       G + Y+ KP S+   M  I+  +
Sbjct: 61  GFEICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU121]
          Length = 236

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +  + L +  +ET+GYI     +G EAL+     +PD+I++D+ L +  
Sbjct: 1   MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESSQPDLIVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 229

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     ++   +++  G+      +  + L    +  PD++++D  L   S
Sbjct: 1   MTANILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAISEPYPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +++D   ++IP+I +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLAKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus CNRZ1066]
          Length = 235

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D      + +  +   GY  +   +G EALE     KPD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI K+I++       P+I ++A   + D+    + G + Y++KP S    +  IK ++ 
Sbjct: 61  LEIVKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 244

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IV+D+E   +L    +    Y      +G EAL+L  ++ PD++++D+ L  +
Sbjct: 1   MSKNNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++  +I++       P+I ++A     D+    K G + YI KP   +  +  +   
Sbjct: 61  DGYQVCTEIRK---TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGAL 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 228

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  +K+++VED+    +L +  +  +G+      +G   L LA   KPD+I++D+ +   
Sbjct: 1   MSAQKILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHAFKPDIILLDLMMPGT 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ +Q+K D     IPVI +TA   + D+    + G + Y+ KP S    +  IK  
Sbjct: 61  DGLEVCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAI 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +L +K  R  +E  G       +G EALE A+  + D+I++D+ L ++ 
Sbjct: 1   MSRKVLVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+E      +P+I +TA     D+    + G + Y++KP ++      IK  I
Sbjct: 61  GLEVCQQIRE---FSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAII 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L +  +E SGY  +   +G EAL+ A   KPD+I++D+ L ++ 
Sbjct: 1   MSKKILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
          Length = 234

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L    
Sbjct: 1   MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+++SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCREIRKNSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 71/119 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E   +L +  +E SGY  +   NG++A++ A++  P++I++DI L  + G +
Sbjct: 5   KILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDTPNLILLDIMLPGMDGYD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I++D+ +   P+I +TA   + D+    + G + YI+KP S+   +  +K  +  
Sbjct: 65  VCKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRR 123


>gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 238

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + L +  +ET+GYI     +G EAL+     +PD++++D+ L ++ 
Sbjct: 1   MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDAVQPDLVVLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
 gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
          Length = 229

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D     ++   ++   GY      +  +A +   +  PD+I++D  L  IS
Sbjct: 1   MPATILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRLNESHPDLILLDWMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +++K +   + +P+I +TA   + D+ R    G + YI+KP S +  +  +K  +
Sbjct: 61  GVDLARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 232

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 68/119 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E  +KL +  +E +GY  +   +G EALE A+   P ++++D+ L  + G +
Sbjct: 5   KILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGYD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ D  +  +PVI +TA   + D+    + G + YI+KP S+   +  +K  +  
Sbjct: 65  VCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRR 123


>gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 229

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+      +   AL   ++  PD+I++D      S
Sbjct: 1   MTARILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQLQEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++K+D   ++IPVI +TA   + D+ +  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
          Length = 232

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    +L R  +   GY      +G E LE     KPD++++D+ +  + GLE
Sbjct: 5   KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++       PV+ +TA     D+    + G + Y+ KP      +  IK  +  
Sbjct: 65  VCRRIRKAG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120


>gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 237

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  ++  GY  +   +G EAL+      PD+I++D+ L +I 
Sbjct: 1   MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+++    + P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVARQIRKE---HDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 229

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E  GY  ++  +  + L   R+  P++I++D  +   S
Sbjct: 1   MAKRILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKVREPYPELIVLDWMMPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  KQ+K+D   ++IPV+ +TA   + D+ R  + G + YI+KP S       +   +
Sbjct: 61  GIQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L    
Sbjct: 1   MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 231

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 69/119 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    ++L +  +E  GY  L+  +G+ ALE+ ++  PD++I+DI L  +SGLE
Sbjct: 2   KILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVILDIMLPGMSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I+ + +  EIP+I ++A   + D+    + G + Y+ KP S    +  +K  +  
Sbjct: 62  VCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARLRR 120


>gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 236

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++VED+    +L    +E  G+  L+  +G EALE+ +    D++++D+ L  I G 
Sbjct: 8   ATVLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLMLPGIDGW 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +QI+ +S+L   PVI +TA     D+ +  + G + Y+ KP      +  +K  +  
Sbjct: 68  EVCRQIRSNSQL---PVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRR 124

Query: 123 A 123
           A
Sbjct: 125 A 125


>gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 236

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+    + KPD++I+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 230

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L +  +  +G+      +   AL+  +   PDVI++D  L  +S
Sbjct: 1   MAANILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHALKFLKTTLPDVILLDWMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++++ D+  Q +P+I +TA   + D+      G + YI+KP S    +  IK  +
Sbjct: 61  GIDLCRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
 gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
          Length = 239

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+      +   A+ L ++  PD+I++D      S
Sbjct: 11  MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++K+D   ++IP+I +TA   + D+ +  + G + YI+KP S    +  IK  +
Sbjct: 71  GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 130

Query: 121 GEA 123
             +
Sbjct: 131 RRS 133


>gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
          Length = 234

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +  +++ +  +   GY      +G EALE   + +PD+II+D+ L ++ G
Sbjct: 1   MKKILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51]
 gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 238

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 67/121 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED+ +  +L    ++  GY  +    G  AL+L  + KPD++++D+ L E+ G
Sbjct: 5   MVKILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVMLPELDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I+ + E   +P+I ++A     D     + G + Y++KP S    +  IK  + 
Sbjct: 65  LEVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLR 124

Query: 122 E 122
           E
Sbjct: 125 E 125


>gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
 gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
          Length = 232

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L R   PD+I++D  L  +S
Sbjct: 1   MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +++++D   + +PVI +TA   + D+    + G + YI+KP S    M  IK  +
Sbjct: 61  GLSLARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 229

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 67/123 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G++     +   AL+L  +  PD++++D      S
Sbjct: 1   MTARILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLLTEPYPDLVLLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++++D   ++IP+I +TA   + D+ R  + G + Y++KP S    +  IK  I
Sbjct: 61  GIQLAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVI 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation
           [Bacillus pseudofirmus OF4]
          Length = 241

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D E    L +  +E SG+      +G E L LA+    D++I+D+ L +I 
Sbjct: 1   MAQRILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I KQ++++ ++   P++ +TA   + D+    + G + Y++KP S    +  ++  +
Sbjct: 61  GLDICKQLRQNKKM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
          Length = 234

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L    
Sbjct: 1   MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 234

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L    
Sbjct: 1   MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis]
          Length = 233

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   G+      +G EALE  ++ +PD+I++D+ L ++ G
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++I++     + P+I V+A   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  LDVAREIRK---TSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 236

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED E   ++ +  +E   Y      NG E  ++   H+PD+II+D+ + +  G
Sbjct: 1   MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+  +I++ S    +P+I +TA   + D       G + Y++KP S    +  ++  + 
Sbjct: 61  WELCGEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 233

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   K+++V+D E  + + +  +E  GY  +   +G EA++L ++    ++I+D+ L +
Sbjct: 1   MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ISG E+  +I+E      +P+I +TA   + D+      G + Y++KP S+   +  +K 
Sbjct: 61  ISGEEVCSKIRE---FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117

Query: 119 YIGEA 123
            I  A
Sbjct: 118 LIRRA 122


>gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 256

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V+IVED E   ++ +  +E   Y      NG E  +L   H+PD+II+D+ + +  
Sbjct: 20  MKRRVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLMMPKKD 79

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA   + D       G + Y++KP S    +  ++  +
Sbjct: 80  GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIIL 136

Query: 121 GE 122
             
Sbjct: 137 RR 138


>gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
 gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
          Length = 235

 Score =  174 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L   
Sbjct: 1   MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 229

 Score =  174 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+      +   AL +  +  PD++++D      +
Sbjct: 1   MTARILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAMLTEPYPDLVLLDWMFPGGN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++++D   + IP+I +TA   + D+ R  + G + +++KP S    +  IK  +
Sbjct: 61  GIQLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVM 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 235

 Score =  174 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 70/121 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D    ++L R +++  G+     ++G+ A++    ++PD+I++D+ L  I G
Sbjct: 1   MAKILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + +++  E  +IPVI VTA + + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 234

 Score =  174 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L    
Sbjct: 1   MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 234

 Score =  174 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L    
Sbjct: 1   MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 237

 Score =  174 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  ++  GY  +   +G EAL+      PD+I++D+ L +I 
Sbjct: 1   MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+++    + P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVARQIRKE---HDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 234

 Score =  174 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L    
Sbjct: 1   MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 232

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    +L R  +   GY      +G E L+   Q KPD++++D+ + ++ GLE
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVMMPKMDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   L   PV+ +TA     D+    + G + Y+ KP      +  IK  +  
Sbjct: 65  VCRRIRK---LGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120


>gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 236

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+    + KPD++I+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAVLAFEEEKPDLVILDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D      L R  +E  G+  ++  +G + L++ R   PD++I+D+ + E+ G 
Sbjct: 7   RRILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPEMDGW 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++E     ++PV+ +TA     D     + G + Y++KP ++      I+  +  
Sbjct: 67  EVCRRLRE---FSQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRR 123


>gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D +L +K  R  +E  GY      +G EAL +A+++  D+I++D+ L +++
Sbjct: 1   MANRVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLMLPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ +QI+E      +P+I +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GLDVCQQIRE---FSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAIL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 228

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L    ++   Y      NG EAL+L ++    ++++D+ + E+ GL 
Sbjct: 7   KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              +I+E      +P+I +TA + + D     K G + YI+KP S    +  I+  +  +
Sbjct: 67  ACMRIRE---FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123


>gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 257

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q  PD+I++D+ L ++ G
Sbjct: 1   MPRILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKGQALALQLLPDLIVLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
 gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
          Length = 229

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E  GY  ++  +  + L   R+  P++I++D  +   S
Sbjct: 1   MAKRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVREPYPELIVLDWMMPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  KQ+K+D   ++IPV+ +TA   + D+ R  + G + YI+KP S       +   +
Sbjct: 61  GIQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 238

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  ++  GY  +   +G EAL+      PD+I++D+ L +I 
Sbjct: 2   MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKID 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+++    + P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 62  GLEVARQIRKE---HDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 228

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D EL   L R  +E  G+     R+G EAL       PD++I+DI L ++ G  
Sbjct: 5   TILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIMLPKMDGWA 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++       P+I +TA   + D     + G + Y+ KP S    +  IK  +  A
Sbjct: 65  VCREIRK---TMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRA 121


>gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
 gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
          Length = 233

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L R   PD+I++D  L   S
Sbjct: 1   MSTTILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGAS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + + ++ D   + +PVI +TA   + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GITLARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 236

 Score =  174 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+E   +  PD+II+D+ L  + G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K++++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 264

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D     +  R  +   GY      +G EAL+ A    PD++++DIQ+  + GL
Sbjct: 33  QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGL 92

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++       +PV+ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 93  TAARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 150

Query: 123 A 123
           +
Sbjct: 151 S 151


>gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
 gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV+IVED     +L    +E  GY      +G + +EL R   PD++++DI L  + 
Sbjct: 1   MAQKVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIMLPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+E  +    PVI +TA     D+    +GG + YI KP  +   +  I   +
Sbjct: 61  GWSVLKKIRESDKT---PVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 236

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+ +  + KPD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L   
Sbjct: 1   MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I +D E   +L R  +E  G+   +  +G + L++ +    D++++D+ +  + G
Sbjct: 1   MKTILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQPIDLVLLDLMMPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K ++ +   ++IP++ +TA   + D       G + YI KP S    +  +K  + 
Sbjct: 61  WTVCKMLRRE---RKIPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 234

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L    
Sbjct: 1   MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363]
 gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp.
           cremoris NZ9000]
 gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 233

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   G+      +G EALE  ++ +PD+I++D+ L ++ G
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++I++     + P+I V+A   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  LDVAREIRK---TSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
 gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
          Length = 229

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     ++   +++  G+      +   A+ +  +  PD+I++D      S
Sbjct: 1   MTAKILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMISEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++++D   ++IP+I +TA   + D+ R  + G + Y++KP S    +  IK  +
Sbjct: 61  GIQLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 229

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+      +   A+ L ++  PD+I++D      S
Sbjct: 1   MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++K+D   ++IP+I +TA   + D+ +  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 235

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L   
Sbjct: 1   MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 235

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L   
Sbjct: 1   MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 1114

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+++  + +  +GY      NG +AL +  + +PD+I++DI + E+SG E+
Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAENGPQALAMVEEQRPDLILLDIMMPEMSGYEV 766

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +++   + E+P++ ++A     D  +  + G   Y++KP +    +  I+ Y+
Sbjct: 767 CTILRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYL 822


>gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
 gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
          Length = 345

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+    ++    ++ +GY      +G  AL  A  H+PD++++D+ L  + GLE
Sbjct: 15  HVLVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAHRPDLVVLDLMLPGMDGLE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E +    +PV+ +TA   + D     + G + Y++KP S    +  +   +  
Sbjct: 75  VCRRLRERAA---VPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRR 130


>gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
 gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 66/120 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED E    L    +   GY  L   +G EAL    + KPD+I++D  L ++SG+E
Sbjct: 5   RILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKVSGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   E + IP+I +TA A +GD  R    G + Y+ KP S+S     IK  +  A
Sbjct: 65  VCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRA 124


>gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
 gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
          Length = 235

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L   
Sbjct: 1   MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIMLPGK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
 gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
          Length = 248

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++I+ED E   ++ +  +E  GY      NGME  +L   H+PD+I++D+ + +  
Sbjct: 9   MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMPKKD 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA   + D       G + Y++KP S    +  ++  +
Sbjct: 69  GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIIL 125

Query: 121 GE 122
             
Sbjct: 126 KR 127


>gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 236

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+ +  + KPD++I+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
 gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
          Length = 236

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED    + L R  +E SG+   +  +G EAL    +  PD++++D  L  +SG+E+
Sbjct: 9   VLVVEDEAPLVTLLRYNLEKSGFRVDEAGDGGEALGRINEAMPDLVLLDWMLPTMSGIEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +Q++     + +PVI +TA A   D  R  + G + YI+KP S    +  I+  +  +
Sbjct: 69  CRQLRRKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRRS 127


>gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
 gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 229

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+      +   A+ L ++  PD+I++D      S
Sbjct: 1   MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++K+D   ++IP+I +TA   + D+ +  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 234

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY      +G EALE  R+ +PD+I++D+ L ++ G
Sbjct: 1   MKKILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVAREVRK---TFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W]
 gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II]
          Length = 238

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  ++  GY  +   +G EAL+      PD+I++D+ L +I 
Sbjct: 2   MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKID 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+++    + P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 62  GLEVARQIRKE---HDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 236

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+ +  + KPD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8]
 gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8]
 gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62]
 gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +   ++ +  +   GY      +G EALE   + +PD+II+D+ L ++ G
Sbjct: 1   MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    +L R  +E  GY    T +G++A++    HKPD++++DI L  + G +
Sbjct: 5   KILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIMLPGMDGWQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ SE    PVI +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 65  VCREIRKKSEK---PVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRR 120


>gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 70/119 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E   +L +  +E +GY  +   NG++AL++ ++  P +I++D+ L  + G +
Sbjct: 5   KILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMDGYD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+ D+ +  IPVI +TA   + D+    + G + Y++KP S+   +  +K  +  
Sbjct: 65  VCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRR 123


>gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 248

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    ++L    ++  G+  +   NG +AL++AR   PD+II+D+ L ++SG +
Sbjct: 2   KILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEHPDLIILDLMLPDMSGFD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I + ++ D     IP++  TA     D     + G + Y++KP S  + +  +K  +  A
Sbjct: 62  ICRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNILRRA 121


>gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
          Length = 237

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++ I+ED +   ++ +  +E+ GY      NG E   L +Q++PD+I++D+ + +  
Sbjct: 1   MTTRIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA A + D       G + Y++KP S    +  ++  +
Sbjct: 61  GWELCEEIRQHS---NVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 247

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L   
Sbjct: 13  MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 72

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 73  DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 129

Query: 120 IGE 122
           +  
Sbjct: 130 LRR 132


>gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
 gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
          Length = 230

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M KK +++VED E  + L    +   G+       G E LE   +  PD++++D+ L  +
Sbjct: 1   MAKKHILVVEDEEDILALLHYNLVREGFRVSLAGTGEEGLETLAEDPPDLVVLDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL++ + +KE+++ + I V+ VTA   + D     + G + Y++KP S  I +  I+  
Sbjct: 61  DGLQVCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241]
 gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L]
 gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1]
 gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055]
 gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger
           B]
 gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Vollum]
 gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Australia 94]
 gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI]
 gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241]
 gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L]
 gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1]
 gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar
           anthracis str. CI]
 gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 235

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L   
Sbjct: 1   MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016]
 gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 240

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++IV+D E   +L +  +E +GY  +    GMEAL++A++ +P +I++D+ L  +
Sbjct: 10  MSKEKILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGM 69

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+I++D  +   P++ +TA   + D+    + G + YI+KP S+   +  +K  
Sbjct: 70  DGYDVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAI 129

Query: 120 IGE 122
           +  
Sbjct: 130 LRR 132


>gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
 gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 72/121 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IV+D E   +L +  +E +GY  +   NG++AL + ++ KPD++++D+ L  + G
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYECICALNGIDALNIVKEEKPDLVLLDLMLPGMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+I++D+ +    +I +TA   + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 63  YDVCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|110640660|ref|YP_668388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 536]
 gi|110342252|gb|ABG68489.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 536]
          Length = 243

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 235

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +    + +  +E  GY  +   +G EAL+      PD+I++D+ L +I 
Sbjct: 1   MAKKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ KQ++     +  P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAKQVRAK---RSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51]
 gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+E   ++ R  +E  GY   +  NG  ALE  R+   D++I+D+ +  + G  
Sbjct: 2   KILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLMMPGLDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++++++   IP+I +TA   + D       G + Y+ KP S       +K  +  
Sbjct: 62  VCKVLRKETK---IPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRR 117


>gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 237

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I+ED +   ++ +  +E  GY      NG E   + +Q++PD+II+D+ + +  
Sbjct: 1   MKKRIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++      +P+I +TA   + D       G + Y++KP S    +  ++  +
Sbjct: 61  GWELCEEIRQ---YSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 230

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 68/123 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     +L R  +   GY+ L+  +G  AL LAR+ +PD+I++D+ L  + 
Sbjct: 1   MTGKILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRERPDLIVLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + +K  SE   + +I +TA A + D+    + G + Y+ KP S    +  IK  +
Sbjct: 61  GLDVCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
 gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
          Length = 229

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+      AL L R   PD++++D  L   S
Sbjct: 1   MAANILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLVRNALPDLVLLDWMLPGAS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K+++ D   + IP+I +TA + + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GIDVAKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|86610346|ref|YP_479108.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558888|gb|ABD03845.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 373

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+D+     + +  +E  GY      NG E LE A    P +II D  + ++ G
Sbjct: 1   MTTILIVDDDPTIRLVLKRSLERQGYTVEMASNGSEGLEQAHLLVPGLIICDWMMPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++IK D +      I +TA     D  +    G + ++SKPI  +     ++  + 
Sbjct: 61  LEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGLR 120


>gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 232

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++VED++  +     L+   GY      +G+EAL   +   PD++++DI L E  G
Sbjct: 1   MKKILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++   +  +P+I +TA   + D+    K G + YI+KP      +  I+  + 
Sbjct: 61  WEVCKEIRK---ISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 239

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 71/123 (57%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +  + L +  +E SGY  +   +G EALE A +  PD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVMLPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ KQ+++   +  +P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIDVCKQLRQQKMM--VPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAIL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 237

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED+E   +L    +  +G+  +   NG +AL L ++  PD++++D+ L  + G +
Sbjct: 11  TILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQREAPDLVVLDVMLPGMDGYQ 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I K ++ D   + +P+I +TA +   D       G + YI+KP S  I +  +K  +  +
Sbjct: 71  ICKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALRRS 130


>gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS678]
          Length = 229

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+      +   A+ L ++  PD+I++D      S
Sbjct: 1   MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++K+D   ++IP+I +TA   + D+ +  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 245

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ ++++++D+    +L    +E +GY   Q  +G++   LA Q  PD+I++D+ L  + 
Sbjct: 1   MMPRILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKGQALAIQMLPDLIMLDLMLPRVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++++ D    +IPV+ +TA     D+      G + Y++KP  L   +  ++  +
Sbjct: 61  GFTVCQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
          Length = 236

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +  + L +  +ET+GYI     +G EAL+     +PD+I++D+ L +  
Sbjct: 1   MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELSQPDLIVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 245

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE+  +  PD++++D+ + ++ G  
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVMMPKLDGYG 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++++DS   ++P+I +TA     D     + G + Y+ KP S       I+  +  A
Sbjct: 71  VCQELRKDS---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRA 127


>gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 237

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D +    + +  ++  GY  +   +G EAL+   +  PD+I++DI L    
Sbjct: 1   MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
 gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
          Length = 232

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++VED++  +     L+   GY      +G+EAL   +   PD++++DI L E  G
Sbjct: 1   MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++   +  +P+I +TA   + D+    K G + YI+KP      +  I+  + 
Sbjct: 61  WEVCKEIRK---ISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
 gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D     ++   ++E +G+ A++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MSRRILVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIASLMEPYPDMILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K+IK+    + IP+I +TA   + D+ +  + G + Y++KP S    M  IK  I
Sbjct: 61  GIQIAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
 gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +L +K  R  +E  G       +G EA+E A+++K D+I++D+ L ++ 
Sbjct: 1   MSRKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+E      +P++ +TA     D+      G + YI+KP ++      IK  +
Sbjct: 61  GLEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 272

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   VMIVED E  + L +  ++  GY  +   +G EA  L R+  PD+I++D  L  +S
Sbjct: 42  MKPSVMIVEDEEALLTLLQYNLDKEGYKVITAADGEEADLLIRETTPDLILLDWMLPGLS 101

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +P+I +TA   + D  R    G + Y++KP S++  +  I+  +
Sbjct: 102 GIELCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVM 161

Query: 121 GE 122
             
Sbjct: 162 RR 163


>gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555]
 gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++IV+D E   +L +  +E +GY  +    GMEAL++A++ +P +I++D+ L  +
Sbjct: 1   MSKEKILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+I++D  +   P++ +TA   + D+    + G + YI+KP S+   +  +K  
Sbjct: 61  DGYDVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAI 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 238

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    +    ++  GY      +G +ALE     +PD++++D+ L +I G
Sbjct: 1   MKKILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKFASFQPDLVVLDLMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +QI++DS+   +P+I +TA   + D+    + G + Y++KP S    M  +K  I 
Sbjct: 61  LEVCRQIRKDSQ---VPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 228

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IV+D E  ++L +  +E  G+      +G +ALE  +   PD++++D+ L  I
Sbjct: 1   MPKTSILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAVKNFSPDLVLLDLMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ + +K       IP+I +TA   + D  R  + G + Y++KP S  + +  ++  
Sbjct: 61  DGLEVARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 MRR 123


>gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 227

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++VEDN    ++ R+ +   GY      NG+E L   R H PD+I++D+ +  + G
Sbjct: 1   MKTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  ++ + D      PV+ +TA   + D+    + G + Y++KP S++  +  I+  + 
Sbjct: 61  LEFLRKYRAD---AGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
 gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
          Length = 228

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED     ++    +  S Y   Q  +G   L L  +  PD++++D  L  +SG
Sbjct: 1   MVKILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLDEIVPDLVLLDWMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  +++K     +++P+I +TA   + D+ R  + G + +++KP S    +  IK  + 
Sbjct: 61  IDFARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 342

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D     +  +  +   GY      +G++AL  A  ++PD++++DIQ+  + GL 
Sbjct: 108 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 167

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++       +PV+ +TA    GD       G + Y+ KP  L      I+  +  +
Sbjct: 168 AARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 225


>gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +L +K  R  +E  G       +G EA+E A+ +K D+I++D+ L ++ 
Sbjct: 1   MSRKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+E      +P++ +TA     D+      G + YI+KP ++      IK  +
Sbjct: 61  GLEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 237

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IV+D     ++ R  +   G+   +  +G  AL   R    D++I+DI L +I G 
Sbjct: 8   ARILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIMLPKIDGW 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++   + ++P++ +TA   + D     + G + YI KP S    +  +K  +  
Sbjct: 68  EVCREIRK---ISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRR 124

Query: 123 A 123
           A
Sbjct: 125 A 125


>gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 236

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+ +  + KPD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      +P+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 340

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D     +  +  +   GY      +G++AL  A  ++PD++++DIQ+  + GL 
Sbjct: 106 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 165

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++       +PV+ +TA    GD       G + Y+ KP  L      I+  +  +
Sbjct: 166 AARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 223


>gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 237

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D +    + +  ++  GY  +   +G EAL+   +  PD+I++DI L    
Sbjct: 1   MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254508241|ref|ZP_05120365.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           16]
 gi|219548858|gb|EED25859.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           16]
          Length = 1111

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 64/115 (55%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D  +N+++    +   GY     ++G+EA E     KP+++++DI +  +SG ++ 
Sbjct: 708 LVVDDEPVNLRVLDSFLRLEGYRVQTAKDGLEAFEKLEAEKPELVLLDIMMPGMSGYQVC 767

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++D +  ++PVI +TA     D  R  + G   Y+SKP +       I+ ++
Sbjct: 768 EKLRQDYDHAQLPVIMLTALNQADDRLRGFEAGANDYLSKPFNKQELAARIRAHL 822


>gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
 gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
          Length = 233

 Score =  173 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 71/120 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     +L    +E +G+  + T +G + +  A+   P +I++D  L  +SG+E
Sbjct: 8   KILVVEDEPSQQELLVYNLEKAGFRVVATGDGEDGVAAAQDENPALIVLDWMLPGLSGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ D++ ++IP+I +TA   +GD+ R    G + YI KP S++  +  ++ +I  A
Sbjct: 68  VCRQLRRDADTRQIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRRA 127


>gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 235

 Score =  173 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    ++ SGY      +G  AL+ A +   D++++DI L E+ GLE+
Sbjct: 3   ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +Q+K D +   IP+I +TA A + D     + G + Y+ KP S+   +  +K  +  +
Sbjct: 61  CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119


>gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
 gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
          Length = 240

 Score =  173 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  + ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  + ++
Sbjct: 6   MSSRSILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQKPDLILLDWMMPQV 65

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E  +++K D    EIP+I +TA   +  +    + G + YI+KP S    +  +K  
Sbjct: 66  SGVEFARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAV 125

Query: 120 IGEA 123
           +  +
Sbjct: 126 LRRS 129


>gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 229

 Score =  173 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 251

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL   RQ +PD++++D+ + ++ G  
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQPDLVVLDVMMPKLDGYG 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126


>gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
 gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
          Length = 236

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  ++  +   A  L R   PD++++D  L  +S
Sbjct: 1   MPANILLVEDEPAIQELIAANLSRAGHHVVRAADAEAAQRLVRDALPDLVLLDWMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  ++++ +   +EIP+I +TA   + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GIDFARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 233

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L R  +E  G+    ++NG+ ALE+ +Q +PDVII+D+ L  + GLE+
Sbjct: 3   ILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 63  CARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRRS 121


>gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301]
 gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T]
 gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401]
 gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 301]
 gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 2457T]
 gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5
           str. 8401]
 gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella
           flexneri 2002017]
 gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2a str. 2457T]
 gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2747-71]
 gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-671]
 gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2930-71]
 gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-304]
          Length = 229

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 71/122 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D +  +++ +  +E  GY  +  R+G  AL+LAR  KPD+II+DI L E  G
Sbjct: 1   MPSVLVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++++ + + IP+I V+A   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LAVCRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 233

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L R  +E  G+    ++NG+ ALE+ +Q +PDVII+D+ L  + GLE+
Sbjct: 3   ILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 63  CARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRRS 121


>gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 235

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    +    ++  GY  L   +G EALE    ++PD+I++D+ L +  G
Sbjct: 1   MKKILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESFASYQPDLIVLDLMLPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I++      +P+I +TA   + D+    + G + Y++KP S       IK  + 
Sbjct: 61  LEVCREIRK---TSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 239

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +  + L +  +E +GY  +   +G E  +LA +  PD++I+D+ L +I 
Sbjct: 1   MSKKILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQI++   +  IP++ +TA   + D+    + G + Y++KP S    M  +K  +
Sbjct: 61  GIEVCKQIRQQKVM--IPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 236

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +    + +  +E  G+  +   +G EA+E   Q KPD+I++DI L    G+
Sbjct: 4   KKILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIMLPNKDGM 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKQFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120


>gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 229

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 67/123 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   +++  G+      +   A+EL ++  PD+I++D      S
Sbjct: 1   MTARILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELLKEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++K+D   ++IP+I +TA   + D+ +  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 229

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
 gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
          Length = 236

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + L +  +ET+GYI     +G EALE   + +PD+I++D+ L +  
Sbjct: 1   MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|296133006|ref|YP_003640253.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola sp. JR]
 gi|296031584|gb|ADG82352.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola potens JR]
          Length = 314

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 71/121 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++++D++  +++ +D +E  G+I     +   A+EL  Q  PD+I++D+ L +++G 
Sbjct: 7   QRILVIDDDKFMVRIIKDCLEKVGFIVYGAEDFSSAMELIYQMTPDLILLDVVLPKMNGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + ++ D+    +P+I +T+ AM  D+    + G + YI+KP      +  +K ++  
Sbjct: 67  EICRLLRNDTRTSHVPIIMITSKAMTEDKVAGLEAGADDYITKPFDPLELVARVKTHLRR 126

Query: 123 A 123
           A
Sbjct: 127 A 127


>gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 235

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY      +G EAL+   +  PD+I++D+ L ++ G
Sbjct: 1   MKKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q++++    ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVARQVRKN---YDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 242

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L    +E +GY  +  R+G EALE A   +PD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ++    +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIEVCKQLRIQKMM--FPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAIL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
 gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 65/120 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   ++L    +   GY  L+  +G EAL+LA +   D+ I+DI L  + G 
Sbjct: 16  KKILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIMLPGMDGF 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+   + +  PVI ++A   + D+    + G + YI+KP S+   +  +K     
Sbjct: 76  ELVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 135


>gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6]
 gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
          Length = 251

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EALE     +PD+II+D+ L EI G
Sbjct: 18  MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 77

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P++ ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 78  LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 134

Query: 122 EA 123
            +
Sbjct: 135 RS 136


>gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 231

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED     +  R  +E  GY  +   +G++ LE AR+  PD+I++DI L  + G
Sbjct: 1   MPTILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIMLPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++++S   ++P+I +TA   + D     + G + YISKP SL  F+  I+  + 
Sbjct: 61  FSVCRILRQES---DVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 236

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+IV+D +    + +  +   GY  +   +G EA+    + KPD++I+D+ L E+ G
Sbjct: 1   MKKVLIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFEEEKPDLVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
 gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
          Length = 240

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D  + +K     ++  GY      +G EA+ELAR+ K D+II+D+ + +I G
Sbjct: 8   MAKILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMMPKIDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L+   +I+E      +P+I +TA +   D+    + G + YI+KP ++      ++  + 
Sbjct: 68  LQACMRIRE---FSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLR 124

Query: 122 EA 123
            +
Sbjct: 125 RS 126


>gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 110-3]
 gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H263]
          Length = 229

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 229

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E  GY  ++  +  + L    +  P++I++D  +   S
Sbjct: 1   MAKRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVCEPYPELIVLDWMMPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  KQ+K+D   ++IPV+ +TA   + D+ R  + G + YI+KP S       +   +
Sbjct: 61  GIQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032]
 gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032]
          Length = 242

 Score =  173 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L    +E +GY  +  R+G EALE A   +PD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ++    +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIEVCKQLRIQKMM--FPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAIL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB
           [Shewanella denitrificans OS217]
 gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 229

 Score =  173 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 67/123 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     ++   ++E  G+  +   +   A+ L ++  PD+I++D      S
Sbjct: 1   MTARILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLLQEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++K+D   ++IP+I +TA   + D+ +  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782]
 gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 236

 Score =  173 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+ +  + KPD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      +P+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
 gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
          Length = 237

 Score =  173 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVED +  + +    +E  GY  L+  +G   L+LA +  PD++++D+ L  + 
Sbjct: 1   MGKTVLIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQNPDLVLLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+E      +P++ +TA   + D+    + G + YI+KP  +   +  +K  I
Sbjct: 61  GFEVCRRIRETG--SAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANI 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 238

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +  + + +  +   GY      +G EAL+   +  PD+II+D+ L +I 
Sbjct: 1   MAKKILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++    ++ P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRK---TKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 237

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D +    + +  ++  GY  +   +G EAL+   +  PD+I++DI L    
Sbjct: 1   MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 235

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++V+D +    + +  +E  GY  +   +G E LE     +PD+II+D+ L +I 
Sbjct: 1   MANKVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+++        P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAKRVRAK---HNTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 234

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY      +G EALE   + +PD+I++D+ L ++ G
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++++    ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVAREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197]
 gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
 gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae]
 gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae
           Sd197]
 gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
          Length = 229

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638]
 gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 229

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K IK ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 235

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D    ++L R  +E +GY      +G  AL+  RQ  PD+II+DI L  I GLE
Sbjct: 5   TILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQVPDLIILDIMLPGIDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++      ++P+I +TA   + D+    + G + YI+KP  +   +  +K  +  
Sbjct: 65  VCKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRR 123


>gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 229

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E +GY  ++  +   A+    +  PD++++D  L   S
Sbjct: 1   MAKRILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRLSEPYPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ KQ+K DS  ++IPV+ VTA   + D  R    G + YI+KP S    +  IK  +
Sbjct: 61  GIQLIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter
           turnerae T7901]
 gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Teredinibacter turnerae T7901]
          Length = 235

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D      + R  +E + Y  L+  +  EA ++    +PD+I++D  +  +SG+
Sbjct: 4   KKILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDTRPDLILLDWMMPGVSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  +++K     +EIP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  EFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1]
 gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+    +  D +++DI + E+
Sbjct: 1   MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
 gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
          Length = 235

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  GY  +   +G EALE      PD+II+D+ L ++ 
Sbjct: 1   MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLMLPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+++        P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAKRVRAK---HTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 223

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I++D+    ++ +  +E  G+  +   NGM+ + + +   PD++I+DI L +  G E
Sbjct: 2   KILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++   +  IP+I +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 62  VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117


>gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 228

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 71/122 (58%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++V+D E   ++ R  +E  G++ L+ ++G EAL+   +HK D+II+D+ L EI G
Sbjct: 1   MKTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EI K+I++      +P+I +TA   + D+    + G + Y+ KP S    +  +K  + 
Sbjct: 61  MEIAKEIRK---TSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|156743164|ref|YP_001433293.1| response regulator receiver modulated diguanylate cyclase
           [Roseiflexus castenholzii DSM 13941]
 gi|156234492|gb|ABU59275.1| response regulator receiver modulated diguanylate cyclase
           [Roseiflexus castenholzii DSM 13941]
          Length = 443

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 67/123 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I +D     +L   ++ + GY    T+NG + +  A++  PD++I+D+ + ++ 
Sbjct: 1   MTKRILIADDEPAVRQLLELVLRSQGYEVFVTQNGDQLVRTAQEWIPDLVIVDLMMPQMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  +Q++ D+    +P++ +TA +   D       G + YI+KP ++   +  I+ ++
Sbjct: 61  GYEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYITKPFNIPELLARIRAHL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|281355429|ref|ZP_06241923.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318309|gb|EFB02329.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 231

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K K+++VED E   +L R  +   GY       +G EAL  A +  PD+I++D+ L  
Sbjct: 1   MGKEKILVVEDEEAIQELIRYNLNKDGYDRVRCCESGEEALAAATEFAPDLILLDLMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GL + +++K D+    IP+I +TA + + D     + G + Y+ KP S  + +  IK 
Sbjct: 61  MDGLAVCRRLKSDTRTSAIPIIMLTAKSEESDIVIGLEMGADDYLPKPFSPKVLIARIKS 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|315181014|gb|ADT87928.1| Response regulator [Vibrio furnissii NCTC 11218]
          Length = 203

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 235

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY      +G EAL+   +  PD+I++D+ L ++ G
Sbjct: 1   MKKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q++++    ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVARQVRKN---YDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 251

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L R  +E   Y   +  NG EA+    +   D+I++D+ +    G+E
Sbjct: 19  KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QI+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 79  VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 135


>gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio angustum S14]
 gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium angustum S14]
          Length = 1114

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 68/116 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+++  + +  +GY      +G +AL++ +Q +PD+I++DI + E+SG E+
Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQALDIVQQQRPDLILLDIMMPEMSGYEV 766

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +++   + E+P++ ++A     D  +  + G   Y++KP +    +  I+ Y+
Sbjct: 767 CTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYL 822


>gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
 gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
          Length = 229

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E+ G+  ++  +G EAL L  + +PD+I++D  L   SG+EI
Sbjct: 8   VLVVEDEPAQREVLAYNLESEGFRVIKAADGNEALLLIEEEQPDLILLDWMLPGTSGIEI 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +QIK     +  PVI ++A + + D+ R  + G + YISKP S+   +  +K ++  +
Sbjct: 68  CRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRRS 126


>gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 223

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D+    ++ +  +E  G+  +   NG++ + + +   PD++I+DI L +  G E
Sbjct: 2   KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIMLPKKDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++   +  IP+I +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 62  VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117


>gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
          Length = 227

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V I ED    + L +  +E  G+      NG EAL+  +  +PD+I+MD  L ++S
Sbjct: 1   MSAHVFIAEDETSIVTLLKYNLEKEGHKVSFCENGEEALKQIKDKQPDLILMDWMLPDLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K +K+D +  +IP+I +TA   + D+ +    G + Y++KP S       IK  +
Sbjct: 61  GVDICKNLKKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 223

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D+    ++ +  +E  G+  +   NGM+ + + +   PD++I+DI L +  G E
Sbjct: 2   KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++   +  IP+I +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 62  VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117


>gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  K+++V+D E   +L +  +E   Y      NG +AL++A +++ D+I++D+ +  
Sbjct: 1   MSQDAKILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G+E+ ++I++    +  P+I +TA   + +  +  + G + YI KP S    +  +K 
Sbjct: 61  IDGIEVCEEIRKH---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKA 117

Query: 119 YIGEA 123
            +  +
Sbjct: 118 LLRRS 122


>gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 226

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K+++++D E   +L +  +ET+GY      +G E  +       D+II+D+ L  I G
Sbjct: 1   MEKILVIDDEENIRELIKFNLETAGYRVELAADGEEGWDRLND-SIDLIILDLMLPRIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L   +Q++ ++  ++IP+I +TA   + D+    + G + YI+KP S    +  IK  + 
Sbjct: 60  LSFCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L  + G
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    EIPV+ +TA +   D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 4343-70]
          Length = 229

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pelagibaca bermudensis HTCC2601]
 gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. HTCC2601]
          Length = 229

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 66/120 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++ R  +E  G+      NG EAL +  + +PDVI++D  L  +SG+E
Sbjct: 7   TVLVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEEPDVIVLDWMLPNLSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QIK   E + +PVI ++A + + D  R  + G + Y+ KP SL   M  +K  +  A
Sbjct: 67  VCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRRA 126


>gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes]
          Length = 239

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+ +  + KPD+II+D+ L E+ G
Sbjct: 4   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      +P+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 64  LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 235

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  +ET GY       G EA    ++  PD++++D  L  +S
Sbjct: 1   MTARILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRLKERVPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 236

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   GY      +G+EAL+     +PD+I++DI L +  
Sbjct: 3   MEKKILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQKD 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 63  GMEVCREIRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
 gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
          Length = 230

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY  ++  +   AL L  +  PD+I++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLCEPYPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IPV+ +TA   + D+ R  + G + YI+KP S    M  +K  I
Sbjct: 61  GINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
 gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
          Length = 234

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EALE     +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 229

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 236

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   GY      +G EALE   + +PD+I++DI L +  
Sbjct: 1   MDKKILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIMLPKRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++      +P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|531494|emb|CAA56927.1| phoB [Shigella flexneri]
          Length = 229

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 249

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + L +  +ET+GYI     +G EALE   + +PD+I++D+ L +  
Sbjct: 14  MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKD 73

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 74  GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 131

Query: 121 GEA 123
             +
Sbjct: 132 RRS 134


>gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905]
          Length = 229

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933]
 gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227]
 gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           W3110]
 gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89]
 gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1]
 gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A]
 gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS]
 gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739]
 gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5]
 gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94]
 gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11]
 gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1]
 gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88]
 gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a]
 gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989]
 gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39]
 gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026]
 gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606]
 gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B]
 gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736]
 gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Escherichia coli O157:H7 str. EDL933]
 gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli]
 gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli
           O157:H7 str. Sakai]
 gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150]
 gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227]
 gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K12 substr.
           W3110]
 gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli
           UTI89]
 gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC
           O1]
 gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli HS]
 gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E24377A]
 gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli SMS-3-5]
 gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii CDC 3083-94]
 gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11]
 gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli]
 gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli 55989]
 gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI1]
 gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli S88]
 gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI39]
 gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli ED1a]
 gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli UMN026]
 gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia
           coli LF82]
 gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli B str. REL606]
 gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BL21(DE3)]
 gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli DH1]
 gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15]
 gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator
           [Escherichia coli 042]
 gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli IHE3034]
 gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU
           83972]
 gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146]
 gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator
           [Escherichia coli ETEC H10407]
 gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli W]
 gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1]
 gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 85-1]
 gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 153-1]
 gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 3431]
 gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112]
 gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83]
 gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327]
 gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B]
 gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           G5101]
 gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str.
           493-89]
 gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H
           2687]
 gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli EPECa14]
 gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E128010]
 gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           sonnei 53G]
 gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli LT-68]
 gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1180]
 gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli RN587/1]
 gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli KO11]
 gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1520]
 gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E482]
 gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H120]
 gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H252]
 gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H489]
 gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M863]
 gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA007]
 gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TW10509]
 gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 57-2]
 gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 60-1]
 gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 117-3]
 gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1167]
 gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044]
 gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125]
 gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli STEC_7v]
 gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Escherichia coli AA86]
 gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 155-74]
 gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 5216-82]
 gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 3594-74]
 gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88]
          Length = 229

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 244

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D     +  R  +   GY      +G EAL+ A    PD++++DIQ+  + GL
Sbjct: 13  QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++       +PV+ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 73  TAARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130

Query: 123 A 123
           +
Sbjct: 131 S 131


>gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
 gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
          Length = 1117

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 65/115 (56%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D  +N+++  + +   GY  L   +G +AL++  Q +P +I++DI + E+SG E+ 
Sbjct: 712 LVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPALILLDIMMPEMSGYEVC 771

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++E+  L E+P+I ++A     D  +  + G   Y++KP +    +  I  ++
Sbjct: 772 HILREEHSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHL 826


>gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
 gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
          Length = 239

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D E  + L +  +E SGY  +   +G   L+LA+    D+II+D+ L E+ 
Sbjct: 1   MTQRLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ KQ+++   +   P++ +TA   + D+    + G + Y++KP S    +  ++  +
Sbjct: 61  GLDVCKQLRQSKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
 gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
          Length = 236

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  ++  GY      +G EA+++A + KPD++++DI L    
Sbjct: 1   MDKKILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIMLPNRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREIRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K IK ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 242

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  RQ  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469]
 gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia fergusonii ATCC 35469]
 gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia fergusonii B253]
 gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4]
          Length = 238

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +  + L +  +E +GY  L   +G E  ELA   KPD I++D+ L ++ 
Sbjct: 1   MSKKILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K +++   +   P++ +TA   + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GIEVCKNLRQQKMM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila
           SL1]
 gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family
           [Halorhodospira halophila SL1]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED+    ++    +E  G+  +   + M+  E  RQ  PD+I++D  L ++S
Sbjct: 1   MAVRILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQLRQRPPDLILLDWMLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  +++KED + ++IP+I +TA   + D+ R    G + Y++KP S       +K  +
Sbjct: 61  GVEWARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++VED+E  ++L     E++G+       G E LE+A + KP ++++D+ L  +
Sbjct: 1   MTKERILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQKPALVLLDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGL++ +++K   E +++PVI +TA   + D     + G + Y+ KP S    +  I+  
Sbjct: 61  SGLDVCRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAV 120

Query: 120 IGEA 123
           +  A
Sbjct: 121 LKRA 124


>gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  K+++V+D E  + + +  +E   Y  +   +G EA++L ++    +II+D+ L +
Sbjct: 1   MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG E+  +I+E S    +P+I +TA   + D+      G + Y++KP S+   +  +K 
Sbjct: 61  LSGEEVCSKIRESS---NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117

Query: 119 YIGEA 123
            I  A
Sbjct: 118 LIRRA 122


>gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032]
 gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB
           [Cronobacter turicensis z3032]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K IK ++  +EIPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894]
 gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K IK ++  +EIPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 342

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + MEAL+L  + + D+II+DI +  + 
Sbjct: 115 MESKILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 174

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + IP+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 175 GIEACMKIRED---RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 231

Query: 121 GE 122
             
Sbjct: 232 RR 233


>gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 236

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ K++++V+D +    + +  ++  GY  +   +G EAL+   +  PD+I++DI L + 
Sbjct: 1   MMEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  ++  
Sbjct: 61  DGMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-272]
 gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-227]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis]
          Length = 283

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +   ++ +  +   GY      +G EALE   + +PD+II+D+ L ++ GL
Sbjct: 51  KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 110

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 111 EVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 167


>gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 233

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 61/123 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D+    +L    +   GY      +G EAL +      D+I++D+ +  + 
Sbjct: 1   MTRTILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++ D   + +P++ V+A A   D+      G + Y++KP +       +K  +
Sbjct: 61  GLELCRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 227

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IVED+E  ++L +  +E++GY A+   +G+EAL  AR+H PD+I++D+ L  +
Sbjct: 1   MAKETILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRHMPDLILLDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ K++K  SE   IP++ +TA   + D     + G + Y+ KP S    +  ++  
Sbjct: 61  DGFEVCKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or
           CreC) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates pho regulon (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +++IVED+   + L    IE +G+  ++  +G  ALE+ R+H PD++++D+ +  I
Sbjct: 1   MPKARILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHPPDLVVLDLMIPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ K++K  +E + IPVI +TA   + D     + G + Y+ KP S    +  I+  
Sbjct: 61  DGFEVCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAI 120

Query: 120 IGEA 123
           +  +
Sbjct: 121 LRRS 124


>gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 241

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  GY  +   +G EALE     KPD+II+D+ L +I 
Sbjct: 7   MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLMLPKID 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+++        P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 67  GLEVAKRVRAK---HTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 123

Query: 121 GE 122
             
Sbjct: 124 RR 125


>gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
 gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
          Length = 251

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 67/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED+   + + R  +E +GY  ++  +G+    LA Q  PD+II+D+ L ++ G
Sbjct: 1   MARILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + ++++ +    EIP++ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  LTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 227

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IVEDN     + R+ ++  GY      NG E L   R H+PD++++D+ +  + G
Sbjct: 1   MKTILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLDMMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  ++ +        PV+ +TA   + D+    + G + Y++KP S++  +  ++ ++ 
Sbjct: 61  LEFLRRFRAAE---HAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 223

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D+    ++ +  +E  G+  +   NG + + + +   PD++I+DI L +  G E
Sbjct: 2   KILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIMLPKKDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   +  IP+I +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 62  VCREIRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117


>gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 233

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    ++L R  ++  GY  L   +G EAL +A++  PD++++D+ L  I G E
Sbjct: 5   KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +T++I+ ++   EIP++ +TA   + D     + G   YISKP S    +  I+  +  
Sbjct: 65  VTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRR 123


>gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 237

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D E  ++L R  +E  GY  L   NG E + + + +K D++++D+ L  + G+
Sbjct: 7   KTILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLMLPGMDGI 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I K++    E + +P+I +TA + + D     + G + YI+KP S+   +  I+  +  
Sbjct: 67  QICKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRR 126

Query: 123 A 123
           +
Sbjct: 127 S 127


>gi|22297889|ref|NP_681136.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294067|dbj|BAC07898.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 121

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED+    ++  +L+  +G+      +G+EA+E  +Q  PDV+++DI +  ++G
Sbjct: 1   MTKVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QIK D   Q IPV+  ++   + D     K G +AYI+KP      + TIK+ + 
Sbjct: 61  YEVCRQIKSDPRTQSIPVVMCSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLLR 120


>gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +    + +  +E  GY  +   +G EAL+      PD+I++D+ L +I 
Sbjct: 11  MDKKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKID 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ KQ++     +  P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 71  GLEVAKQVRAK---RSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 127

Query: 121 GE 122
             
Sbjct: 128 RR 129


>gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804]
 gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii]
          Length = 232

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L R   PD+I++D  L   S
Sbjct: 1   MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAELPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +++++D   + +PVI +TA   + D+    + G + YI+KP S    M  IK  +
Sbjct: 61  GLTLARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 227

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E  + L +  +E  G+   +  +G +AL++  + + ++II+D+ L  I G  
Sbjct: 5   RILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLMLPVIDGWT 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K++++ S   +IP+I +TA   + D+    + G + Y+ KP S    +  +K  +  
Sbjct: 65  VCKEVRKKS---DIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRR 120


>gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
 gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K IK ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L +  +E SGY  +   +G EAL+ A   KPD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 274

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED +    + RD +  +G+      +G  ALELA   +PD++I+D  L  + G+
Sbjct: 32  RRILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELAASRQPDLVILDRMLPGLDGV 91

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++      +PVI VTA   + D     + G + Y++KP S    +  +K  +  
Sbjct: 92  EVCRRLRQ---TMSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLRR 148

Query: 123 A 123
           +
Sbjct: 149 S 149


>gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942]
 gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942]
          Length = 236

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    +    +   GY      +G EA+E+  + +PD+I++DI L   
Sbjct: 1   MMDKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 235

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L  + +   GY      +G +ALE+A    PD++I+D+ L ++ G E
Sbjct: 5   RILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAETTLPDLVILDLMLPKLDGWE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-E 122
           + ++++E+   + IP+I +TA   + D     + G + Y+ KP SL+  +  +K ++   
Sbjct: 65  VCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRAR 124

Query: 123 A 123
           A
Sbjct: 125 A 125


>gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
 gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
 gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
          Length = 235

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +   KL +  +E  GY  ++  +G  ALELA       I++DI L  + 
Sbjct: 1   MKEKILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K+++E+   +  PVI +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIQVCKRLREE---KSTPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D+    +L    +   G+   +  NG EAL++    K D++IMDI + E+ G
Sbjct: 1   MARILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++   +  ++P++ +TA      + +  + G + Y+ KP      +  +K  + 
Sbjct: 61  WELCRELR---DYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 233

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  ++  GY       G EA    ++  PD++++D  L  +S
Sbjct: 1   MSARILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +++P+I +TA   + +  R    G + Y+ KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 224

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D E  + L    +E +GY   +   G EA+   ++   D+I++DI + E  G
Sbjct: 1   MKKLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIMMPETDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI++ S+   +PVI +TA   K D  +  K G + YISKP      +  I   + 
Sbjct: 61  WEVCRQIRKMSQ---VPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9]
 gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  SG+  L+  +   A  L +   PD++++D  L   S
Sbjct: 1   MPATILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWMLPGQS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  ++++ D   +E+P+I +TA + + D+    + G + YI+KP S       IK  +
Sbjct: 61  GIEFARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
 gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium]
 gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
          Length = 229

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 249

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L  + G
Sbjct: 1   MHRILLIDDDPAISELVSINLEMAGYEVHQAPDGIKGQALALQLQPDLIMLDLMLPRVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ +TA     D+      G + Y++KP  L   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D +    + +  ++  GY  +   +G EAL+   +  PD+I++DI L +  
Sbjct: 1   MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  ++  +
Sbjct: 61  GMEVCREVRKK---YDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD
 gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 240

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L R  +E   Y   +  NG EA+    +   D+I++D+ +    G+E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QI+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 68  VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124


>gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
 gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
          Length = 1131

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 65/115 (56%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D  +N+++  + +   GY  L   +G +AL++  Q +P +I++DI + E+SG E+ 
Sbjct: 726 LVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPALILLDIMMPEMSGYEVC 785

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++E+  L E+P+I ++A     D  +  + G   Y++KP +    +  I  ++
Sbjct: 786 HILREEYSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHL 840


>gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 235

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY      +G EALE   +  PD+II+D+ L +  G
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++++    ++P+I VTA   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVCREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis]
          Length = 241

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L +  +E SGY  +   +G EAL+ A   KPD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
 gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
          Length = 239

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 69/125 (55%), Gaps = 5/125 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  K+++V+D E  + + +  +E  GY  +   +G EA++L ++    ++I+D+ L +
Sbjct: 7   MKKLFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 66

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG E+  +I+E S    +P+I +TA   + D+      G + Y++KP S+   +  +K 
Sbjct: 67  LSGEEVCSKIRESS---NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 123

Query: 119 YIGEA 123
            I  A
Sbjct: 124 LIRRA 128


>gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168]
          Length = 240

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L R  +E   Y   +  NG EA+    +   D+I++D+ +    G+E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QI+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 68  VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124


>gi|328952021|ref|YP_004369355.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfobacca acetoxidans DSM 11109]
 gi|328452345|gb|AEB08174.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfobacca acetoxidans DSM 11109]
          Length = 382

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 7/130 (5%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I +DN  N++L R  +   GY      +G EAL+   +  PD++I+DI + ++ 
Sbjct: 27  MKKKILIADDNPDNVELLRKRLSAQGYQIAAAFDGEEALQAVLKENPDLLILDIMMPKLD 86

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K+  E + +PVI +TA     D+ +    G + YI+KP +    +  ++  +
Sbjct: 87  GYEVLRRLKKQDEYRNLPVILLTAKKEIPDKLKGLDIGADDYITKPFNPQELLARVRSLM 146

Query: 121 -------GEA 123
                    A
Sbjct: 147 ALREEQERRA 156


>gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    +    +   GY      +G EALE+  + KPD+I++DI L    
Sbjct: 1   MEKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
 gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
          Length = 229

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    +E  G+      NG EAL +  +  PD++++D  L  +SG+E
Sbjct: 7   TVLLVEDEPAQREVLSYNLEAEGFRVASAGNGEEALLMMAEENPDIVVLDWMLPNVSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QIK   E + +P+I ++A + + D  R  + G + Y+ KP S+   M  ++  +  A
Sbjct: 67  VCRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRA 126


>gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 236

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+    +  PD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K++++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +L +K  R  +E  G       +G EA+E A+  K D+I++D+ L ++ 
Sbjct: 1   MSRKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+E      +P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GLEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
 gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
          Length = 229

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
 gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
          Length = 229

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IP++ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein phoP
 gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis]
 gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 240

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L +  +E SGY  +   +G EAL+ A   KPD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 244

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D E  ++  R  +E  G+  +    G EALE  R   PD++++D+ L ++ G 
Sbjct: 8   RSILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVMLPDLDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K I+E S     PVI +TA   + D  R  + G + YI+KP S    +  +K  +  
Sbjct: 68  EVLKLIRESS---NTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRR 124


>gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 229

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K++++VED     ++   ++E +GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MVKRILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRLSEPYPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +K D   + IPVI VTA A + D  R    G + YI+KP S    +  +K  +
Sbjct: 61  GIQLIKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 228

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D++   +L R  +   GY      +G  AL    +  PD++++D+ +  + G E
Sbjct: 5   KILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVMMPVMDGWE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+        P+I +TA     D+    + G + YI KP         IK  +  +
Sbjct: 65  VCRKIRAKD---NTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRRS 121


>gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L +  +E SGY  +   +G EAL+ A   KPD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 247

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  RQ  PD++++D+ + ++ G  
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSPDLVVLDVMMPKLDGYG 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126


>gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
 gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
          Length = 342

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + MEAL+L  + + D+II+DI +  + 
Sbjct: 115 MESKILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 174

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + IP+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 175 GIEACMKIRED---RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 231

Query: 121 GE 122
             
Sbjct: 232 RR 233


>gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis]
          Length = 240

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L +  +E SGY  +   +G EAL+ A   KPD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 236

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+ +    KPD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      +P+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 76/123 (61%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++IV+D E  ++L +  +E   Y  L   +G+EA ++A++ KP +I++D+ L  I
Sbjct: 1   MAKEKILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEKPSLILLDLMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ K+I+ D E+ EIP+I +TA + + D+    + G + YI+KP S+   +  +K  
Sbjct: 61  SGMEVCKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 225

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 62/122 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED      L    +E  GY  L   +G   LELAR   PD+I++D+ L  + G
Sbjct: 1   MKTILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPPDLILLDLMLPGMMG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K +K+  +   IPVI +TA   + D     + G + Y+ KP S    +  +K  + 
Sbjct: 61  MEVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family
           [Bacillus pseudofirmus OF4]
          Length = 229

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++IVED     +L +  +   GY+  +   G+EALE   +    V+++D+ + E+
Sbjct: 1   MKEIRILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLYSVVLLDVMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ ++I++   + ++PVI +TA     D+ +  K G + Y++KP      +  ++  
Sbjct: 61  DGFEVCREIRK---VSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 229

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis
           JLW8]
 gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    I  +G+ A++  +G  AL+L R+  PD+I++D  L  ++
Sbjct: 1   MPANILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLMRETVPDLILLDWMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++K D+  + IP+I +TA   + D+ R  + G + Y++KP S       IK  +
Sbjct: 61  GLELARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 236

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+ +  + KPD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++      +P+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 227

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++VED  +  ++ +D +   GY  L+  NG EAL L  +++  ++I+DI + E+ 
Sbjct: 1   MQKTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++      IPVI +TA A + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLL 117


>gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 252

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EISGL 62
           +V++V+D E  ++  R  +   G+      +G   +  A +  PD+II+D+ +   I GL
Sbjct: 18  RVLVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALRINPDIIILDVMMPPGIDGL 77

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++E+   +EIP++ +TA     D     + G + Y++KP      +E I+  +  
Sbjct: 78  EVCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILRR 137


>gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K ++++ED     +L R  +E +GY  +   +G+  +EL  + KPD++I+D+ L  + 
Sbjct: 1   MMK-ILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPMLD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+        P++ +TA   + D       G + Y+ KP S    +  +K  +
Sbjct: 60  GMEVCRRIR---TWANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAIL 116

Query: 121 GEA 123
             A
Sbjct: 117 RRA 119


>gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 230

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED E    + R  +E  GY      +G EALE  R  +PD+I++D+ L E+ 
Sbjct: 1   MPAHILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQPDLILLDVMLPEVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I++ S    +PVI +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GFDVLRAIRQASG---VPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 283

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 62/120 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED+    ++    ++ SG+      +G+EA+ +A +  PD++++D  L  + GL
Sbjct: 31  RRILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGL 90

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+       +PV+ +TA     D       G + Y++KP S    +  ++  +  
Sbjct: 91  EVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 150


>gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 236

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY      +G EAL+  ++ +PD+I++D+ L +I G
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 235

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY      +G EALE   +  PD+II+D+ L +  G
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++++    ++P+I VTA   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVCREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae
           TIGR4]
 gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54]
 gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae]
 gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae]
 gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
 gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54]
 gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 234

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EALE     +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P++ ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
 gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
          Length = 1132

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 68/116 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+++  + +  +GY      +G +A+++ +Q +PD+I++DI + E+SG E+
Sbjct: 721 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQAIDIVQQQRPDLILLDIMMPEMSGYEV 780

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +++   + E+P++ ++A     D  +  + G   Y++KP +    +  I+ Y+
Sbjct: 781 CTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYL 836


>gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family
           [Spirochaeta thermophila DSM 6578]
          Length = 226

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D    ++L R  +E  GY  + T  G +ALE AR   PD II+D+ L  +SGLE
Sbjct: 2   TILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +++      IP++ +TA + + D     + G + YI+KP S  I +  +K  +  
Sbjct: 62  VCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120


>gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 249

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    ++    ++ +GY+  +  +G  AL  A  H PD++++D+ L  + GLE
Sbjct: 16  RILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHWPDLVVLDLMLPGMDGLE 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       +PVI +TA   + D     + G + Y++KP S    +  ++  +  +
Sbjct: 76  VCRRMRGHGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRS 132


>gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 237

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D E   +L +  +E   Y      NG  AL+ A  +  D+I++D+ +  + G+
Sbjct: 5   ARILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLMMPGMDGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++    +  P++ +TA   + +  +  + G + YI KP S    +  +K  +  
Sbjct: 65  EVCEKIRKQ---KATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121

Query: 123 A 123
           A
Sbjct: 122 A 122


>gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxidans DMS010]
 gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxydans DMS010]
          Length = 230

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED+     +    ++ +G+      +G   L+  ++ +PD+I++D  L  I 
Sbjct: 1   MATSVLVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQQPDMILLDWMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  ++++ +  L  IPVI +TA     D  +    G + Y++KP S    M  I+  +
Sbjct: 61  GIEFIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
 gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
          Length = 233

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 69/122 (56%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++VED     ++   +++ +G+ A++  +  +AL    +  PD+I++D  L   +
Sbjct: 1   MSRKILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKIHEPYPDLILLDWMLPGGT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K++K++   + IP+I +TA + + D+ +  + G + +++KP S    +  IK  I
Sbjct: 61  GVSLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|167945734|ref|ZP_02532808.1| sensor histidine kinase with ATPase domain, two fused [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 415

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 78/119 (65%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VEDN +N ++  +L+++ G + L   +G  AL   ++   D+++MD+Q+  + G E
Sbjct: 253 KVLLVEDNPINQQVALELLQSFGLLVLVAEDGRAALRRLQESAFDLVLMDVQMPLMDGYE 312

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T+QI++  ELQ++PVIA+TA AM GD E+    G   Y+SKPI  +  + T++ ++GE
Sbjct: 313 TTRQIRQQPELQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHWLGE 371



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 10/130 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE---------LARQHKPDVIIMDI 54
           +V++V+DN +   +  D++ +  +      N  EA E         LA+     +++MD 
Sbjct: 102 RVLLVDDNPMVRTVLADMLRSFSFEVEVGANAAEAYELLMGAGAVGLAKPKPFQLVLMDW 161

Query: 55  QLQEISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            +  ++G++  + IK++  L + P +I VTAF  +   ++ +  G +A + KP + S+  
Sbjct: 162 HMPPVNGIDAVQHIKQELALVQQPKMILVTAFGREELMQQSQAAGLDAVLLKPANPSLLF 221

Query: 114 ETIKKYIGEA 123
           +TI     E+
Sbjct: 222 DTIMSVFKES 231


>gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 243

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     ++    +   GY  +   +G EALE+ RQ +PD++++D+ + ++ G  
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
 gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
          Length = 234

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  ++  GY       G EA    ++  PD++++D  L  +S
Sbjct: 1   MSARILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRLKERVPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF
 gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis]
 gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis]
 gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 235

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    +    +   GY      +G EA+E+  + +PD+I++DI L    
Sbjct: 1   MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 231

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++    +E  G++     +G EAL  A    PD++++D+ L ++ 
Sbjct: 1   MSARILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDPPDLLVLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++E      +PVI +TA   + D     + G + Y++KP S       ++  +
Sbjct: 61  GLQVCRKLRERWP---VPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 261

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D +  + L    ++ +G+I L   +G E L  A + +PD II+D+ L ++ 
Sbjct: 24  MSKRVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLMLPKLD 83

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 84  GIEVCKQLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 141

Query: 121 GE 122
             
Sbjct: 142 RR 143


>gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 236

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    +    +   GY      +G EA+E+  + +PD+I++DI L   
Sbjct: 1   MMDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Nitrospira defluvii]
 gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB
           [Candidatus Nitrospira defluvii]
          Length = 238

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 66/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IVED +  ++L +  +E  G+  +    G E L   +   PD+II+D+ L E+ GL
Sbjct: 9   KKILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLMLPELDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+ + E   +P++ +TA A + D     + G + Y++KP S    +  +K  +  
Sbjct: 69  EVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRR 128


>gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 229

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
 gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D      + R  +E + Y  ++  N  +A  L    KPD+I++D  +   SG+
Sbjct: 4   RKILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEKPDLILLDWMMPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D     +P+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 233

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  K+++V+D E  + + +  +E   Y  +   +G EA++L ++    +II+D+ L +
Sbjct: 1   MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG E+  +I+E S    +P+I +TA   + D+      G + Y++KP S+   +  +K 
Sbjct: 61  LSGEEVCSKIRESS---NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117

Query: 119 YIGEA 123
            I  A
Sbjct: 118 LIRRA 122


>gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 244

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D     +  R  +   GY      +G EAL  A    PD++++DIQ+  + GL
Sbjct: 13  QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMPGMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++       +PV+ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 73  TAARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130

Query: 123 A 123
           +
Sbjct: 131 S 131


>gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 238

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E   +L +  +E   Y+  +  NG EAL LA +++ DVI++D+ + ++ G+E
Sbjct: 6   KILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLMMPKMDGVE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++    +  PVI +TA   + D  +  + G + YI KP S    +  +K  +  +
Sbjct: 66  VCTELRK---TKATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRRS 122


>gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 244

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++VED  +  ++ +D +   GY  L+  NG EAL L  +++  ++I+DI + E+ 
Sbjct: 18  MQKTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELD 77

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++      IPVI +TA A + D     + G + Y++KP S  I +   K+ +
Sbjct: 78  GWSVCRRIRK---TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLL 134


>gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas
           elongata DSM 2581]
 gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Halomonas elongata DSM 2581]
          Length = 229

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IV+D     ++    +E + Y  L+  N   A  +   H+PD++++D  +   SG+
Sbjct: 4   KTVLIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDHQPDLVLLDWMMPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K +    E+P+I +TA + + ++ +    G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D    + L     E  GY  +   +G +A+++ R+   D+I+MDI + +  G
Sbjct: 1   MSRILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIMMPDTDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+IKE    ++IPVI ++A   + D+    + G + Y++KP S    M  IK  I 
Sbjct: 61  FTACKKIKE---FKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVIN 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 223

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+    +  D +++DI + E+
Sbjct: 1   MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
 gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M +  +++VED    + L R  +E  G+   +  +G EAL    +  PD++++D  L  +
Sbjct: 8   MARPTILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRVAEAPPDLVLLDWMLPAL 67

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGLE+ +Q++   + +++P+I VTA     D  R    G + YI+KP  +   M  I+  
Sbjct: 68  SGLEVCRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRAL 127

Query: 120 IGEA 123
           +  +
Sbjct: 128 LRRS 131


>gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073]
 gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB
           [Escherichia coli CFT073]
          Length = 229

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D    ++L    +  +GY      +G EAL  AR+ +PD++++D+ +  + 
Sbjct: 12  MSPHLLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVMMPGLD 71

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++   E + +PV+ +TA     D+    + G + Y++KP SL   +  ++  +
Sbjct: 72  GFEVVRRLR--GEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALL 129

Query: 121 GEA 123
             +
Sbjct: 130 RRS 132


>gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 234

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED E    L R  +E  G+       G EA    R+  PD++++D  +  +S
Sbjct: 1   MSTRILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEADIRLREQIPDLVLLDWMVPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+   E + +P+I +TA   +GD  R    G + YI KP S+   +  ++  +
Sbjct: 61  GIELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 229

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  ++  +   AL    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I KQ+K ++ +++IPV+ +TA   + D  R  + G + YI+KP S    +  +K  +
Sbjct: 61  GLQIIKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
 gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
          Length = 229

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 65/120 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++ R  +E  G+      NG EAL +  +  PDVI++D  L  +SG+E
Sbjct: 7   TVLVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEALMMMDEESPDVIVLDWMLPNLSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QIK   E + +PVI ++A + + D  R  + G + Y+ KP SL   M  ++  +  A
Sbjct: 67  VCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRRA 126


>gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D    +KL +  +E SG+  +   +G +ALE+ +  +PD II+D+ L ++ G
Sbjct: 1   MIKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ K +++  E    P++ +TA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  MDVCKTLRQ--ERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 242

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 67/123 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I++D+     +    ++ +GY   ++ +GM+   LA Q  PD+I++D+ L ++ 
Sbjct: 1   MKPRILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++++ D   Q+IP++ +TA +   ++      G + Y++KP  L   +  ++  +
Sbjct: 61  GFTICQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1130

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 65/115 (56%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D  +N+++  + +   GY  L   +G +ALEL + HKP +I++DI + E+SG E+ 
Sbjct: 724 LVVDDEPVNLQILNNFLRLEGYRVLTAESGKQALELVQSHKPALILLDIMMPEMSGYEVC 783

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            Q+++     E+P++ ++A     D  +  + G   Y++KP +       IK ++
Sbjct: 784 SQLRQQYTPLELPIMMLSALGQVKDRVKGFECGANDYLTKPFNKEELTARIKAHL 838


>gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+    +  D +++DI + E+
Sbjct: 1   MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 247

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L  + G
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    EIPV+ +TA +   D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
 gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
          Length = 230

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY  ++  +   AL L  +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IPV+ +TA   + D+ R  + G + YI+KP S    M  +K  I
Sbjct: 61  GINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 294

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +   G+      +G EAL +AR+  PD++I+DI +  + GLE
Sbjct: 73  RILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMPGMDGLE 132

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      E+PV+ +TA     D+ +  + G + Y+ KP +  + +  ++  +  
Sbjct: 133 VLQRLRAAD--PELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRR 189


>gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
 gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
          Length = 230

 Score =  171 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY  ++  +   AL L  +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IPV+ +TA   + D+ R  + G + YI+KP S    M  +K  I
Sbjct: 61  GINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  171 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +L +K  R  +E          +G EALELA+ +K D+I++D+ L ++ 
Sbjct: 1   MSKKVLVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+E     ++P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GLEVCQQIRE---FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris DP4]
 gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris RCH1]
          Length = 229

 Score =  171 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++VED+E  ++L R  +E +G+  +    G + LE A++H P ++++D+ L  +
Sbjct: 1   MAKERILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRHVPGLVLLDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG ++ +++K     + +PVI +TA   + D     + G + Y+ KP S    +  I+  
Sbjct: 61  SGFDVCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LKR 123


>gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 236

 Score =  171 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+D +    + +  +E  GY      +G+EALE   +  PD+I++DI L  + G+
Sbjct: 4   RKILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVEEFNPDLILLDIMLPLMDGM 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ +++++     ++P+I +TA   + D     + G   Y++KP S    +  +K ++ 
Sbjct: 64  EVCREVRK---TSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLR 119


>gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 244

 Score =  171 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D     +  R  +   GY      +G EAL  A    PD++++DIQ+  + GL
Sbjct: 13  QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDIQMPGMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++       +PV+ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 73  TAARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130

Query: 123 A 123
           +
Sbjct: 131 S 131


>gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 240

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    ++    ++ +GY+  +  +G EAL  A  H+PD++++D+ L  + GLE
Sbjct: 12  RVLVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAHRPDLVVLDLMLPGMDGLE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       +PVI +TA   + D     + G + Y++KP S    +  ++  +  +
Sbjct: 72  VCRRMRGRGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRS 128


>gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED E    L R  +E  G+       G EA    R+  PD++++D  +  +S
Sbjct: 1   MSTRILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEADIRLREQVPDLVLLDWMVPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+   E + +PVI +TA   +GD  R    G + YI KP S+   +  ++  +
Sbjct: 61  GIELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895]
 gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895]
          Length = 229

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + Y++KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 229

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  ++  GY      +G EALE   + KPD+I++DI L +  
Sbjct: 1   MDKKILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
 gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
          Length = 230

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED +    L +  +E  GY      +G EAL   ++  PD+I++D  L ++SG+E
Sbjct: 5   RILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKVSGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++  E + +P+I +TA   + D  R    G + Y+ KP ++S     I+  +  
Sbjct: 65  VCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRR 123


>gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905]
 gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905]
          Length = 238

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++++ED      L +  +E +GY+     +G E LE A + +P++I++D+ L ++ 
Sbjct: 1   MTKTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIEIQPNLILLDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQI++  +    P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKQIRQ--QRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 250

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 67/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED+   + + R  +E +GY  ++  +G+    LA Q  PD+II+D+ L ++ G
Sbjct: 1   MARILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + ++++ +    EIP++ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  LTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter winogradskyi Nb-255]
 gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 234

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  +E  GY       G EA    ++  PD++++D  L  +S
Sbjct: 1   MGARILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  S+ +++P+I +TA   + +  R    G + Y+ KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
 gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +L +K  R  +E  G       +G EAL++A ++  D+I++DI L ++ 
Sbjct: 1   MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+E     ++P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQHIRE---FSDMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 236

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+    +  PD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEDPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K++++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
 gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
          Length = 279

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 51  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 110

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 111 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 170

Query: 121 GE 122
             
Sbjct: 171 RR 172


>gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 231

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 70/121 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+I++D     ++    +E +GY  L+  N     E+   H+PD+I++D  +   SG+
Sbjct: 4   KKVLIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWMMPGGSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T+++K+DS   EIPVI +TA + + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 240

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     +L    ++ +GY ++   +  +A+ +     PD+I++D  L  ++
Sbjct: 1   MSAKILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTIIHDALPDLILLDWMLPNMT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  + ++ +   + IP+I +TA   + D+    + G + Y++KP S    +  I   +
Sbjct: 61  GIDFARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 238

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +  + + +  +   GY      +G EAL+  +   PD+II+D+ L ++ 
Sbjct: 1   MAKKILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQVKDVDPDLIILDLMLPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++    ++ P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRK---TKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 230

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 71/122 (58%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IV+D E  ++L +  +E  GY      +G EAL+ A+  KP +I++D+ L  + 
Sbjct: 1   MNKKVLIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKAKDIKPGLILLDLMLPIMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  +I+ED EL++ P+I +TA  M+ D+    + G + YI+KP S+   M  +K   
Sbjct: 61  GTKVCSKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVT 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium
           sp. ORS278]
 gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  +E  GY       G EA    ++  PD++++D  L  +S
Sbjct: 1   MGARILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRLKERIPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  SE +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|320160319|ref|YP_004173543.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
 gi|319994172|dbj|BAJ62943.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
          Length = 407

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+ L   +    + T G+  L+  NG++A+E A  H+PD+IIMD+ + E+ 
Sbjct: 1   MPEKILVVDDDALMRLMVTKTLSTEGFEFLEAENGVQAVEKAIAHQPDLIIMDVNMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++I+ +     IP+I VT+ +   D+ +    G + YI KP         +   +
Sbjct: 61  GYEACQRIRSNPITSAIPIILVTSLSTVEDKIKGFDSGADDYIPKPFDPIELTMRVNVLL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8]
 gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8]
          Length = 247

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   ++L    +   GY  L+  +G EAL++A     D+ I+DI L  I G 
Sbjct: 12  KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+   + +  PVI ++A   + D+    + G + YI+KP S+   +  +K     
Sbjct: 72  ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 131


>gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI]
 gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+
Sbjct: 1   MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 233

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  ++  GY  +   +G EALE     +PD+I++D+ L +I G
Sbjct: 1   MPKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q++       IP+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVARQVRAK---HNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus pseudintermedius ED99]
          Length = 234

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 71/123 (57%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V++V+D +  + L +  +E SGY+    ++G EAL+  ++ KPD+I++D+ L +  
Sbjct: 1   MAQRVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D    ++P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKTIRSDKN--QVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046]
 gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046]
          Length = 229

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 235

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 69/120 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D E  ++L +  +E  GY    T +G  AL+  ++   D++++D+ L EI GL
Sbjct: 4   KKILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEEDIDLLVLDLMLPEIGGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I +QI+ D EL ++P+I +TA   + D     + G + Y++KP S    +  +K  +  
Sbjct: 64  DICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRR 123


>gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 229

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++V+D E  ++L    +   GY  + T  G  A+E++R  +PD+I++D+ L  +
Sbjct: 1   MAKERILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVERPDLIVLDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ K +K++ E Q IP++ +TA   + D     + G + Y++KP S  I +  I+  
Sbjct: 61  DGLEVAKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 236

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 72/121 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+I++D     ++    +E +GY  L+  N  +A E+   H+PD+I++D  +   SG+
Sbjct: 9   KKVLIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWMMPGGSGI 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T+++K+D+   EIPVI +TA + + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 69  ELTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 128

Query: 123 A 123
           A
Sbjct: 129 A 129


>gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 263

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D+    +L    +E +GY   Q  +G++   LA Q  PD+I++D+ L  + 
Sbjct: 1   MKPRILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++++ D     IP++ +TA +   D+      G + Y++KP  +   +  ++  +
Sbjct: 61  GFTVCQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED      + R  +E  GY   +  +G EAL L  + KPD++++D  L  +S
Sbjct: 3   MKPLILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPSLS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +Q++     +E+P+I +TA   +GD+ R    G + Y++KP SL   M  I+  +
Sbjct: 63  GIEVCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAML 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 223

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+
Sbjct: 1   MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L R  +E   Y   +  NG EA+    +   D+I++D+ +    G+E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLMMPGTDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QI+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 68  VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124


>gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601]
          Length = 247

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L  + G
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    EIPV+ +TA +   D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter
           sphaeroides f. sp. denitrificans]
          Length = 230

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 66/119 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E+ G+  +Q  NG EAL L  +  PDVI++D  L  +SG+E+
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +Q+K     + +P+I ++A + + D  R  + G + Y+ KP S+   M  ++  +  A
Sbjct: 69  CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127


>gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D +  +++ +  +E +GY  ++  +G E L++A++  PD+I++D+ L ++ G
Sbjct: 1   MSRILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + +++       P++ +TA   + D+    + G + Y++KP S+   +  +K  + 
Sbjct: 61  FTVLRILRQ---TMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IV+D +   ++       SG+   +  +G EAL    Q KPD++I+DI +  + G 
Sbjct: 4   KTVLIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIMMPVLDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +QI++      +P+I +T+     D     + G + Y++KP +    +  +K  +  
Sbjct: 64  EVCQQIRK---YSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRR 120


>gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri]
 gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
          Length = 235

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  GY  +   +G  ALE      PD+II+D+ L +I 
Sbjct: 1   MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+++       +P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAKRVRAK---HTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51]
 gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+E   ++ R  +E  G+   +  NG  ALE  R    D+II+D+ +  + G  
Sbjct: 2   RILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMIPGLDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++++++   IP+I +TA   + D       G + YI KP S       +K  +  
Sbjct: 62  VCKVLRKETQ---IPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRR 117


>gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 230

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED E    + R  +E  GY      +G EAL+  R  +PD+I++D+ L E+ 
Sbjct: 1   MPAHILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVMLPEVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I++ S    +PVI +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GFDVLRAIRQASG---VPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
 gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
          Length = 238

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   G+  +   +G E L +     PD++I+D+ L +I G
Sbjct: 1   MKKILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLPKIEG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I++      +P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVCREIRK---TSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
 gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
          Length = 237

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    +    +E  GY   +  +G +AL++  + +PD++I+D+ L ++ G
Sbjct: 4   MKKILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLMLPKMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I++ S    +PVI +TA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 64  LEVCREIRKQSA---VPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241]
 gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241]
          Length = 223

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+    +  D +++DI + E+
Sbjct: 1   MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 239

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   ++L    +   GY  L+  +G EAL++A     D+ I+DI L  I G 
Sbjct: 4   KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+   + +  PVI ++A   + D+    + G + YI+KP S+   +  +K     
Sbjct: 64  ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRR 123


>gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 273

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++VED +    + +  +   G+      +G EAL+   +  PD+I++D+ L    
Sbjct: 39  MAAKILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLPGTD 98

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI ++++E      +P+I VTA   + D+    + G + Y++KP S    +  IK  +
Sbjct: 99  GIEICRKVREKYR---MPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANL 155

Query: 121 GE 122
             
Sbjct: 156 RR 157


>gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 238

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D +   +L +  +E   Y   +  NG +AL LA +   D+I++DI +  + G+
Sbjct: 5   AKILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMPGMDGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  
Sbjct: 65  EVCQELRK---TKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
 gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
          Length = 236

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +  + L +  +ET+GYI     +G EAL+   + +P++I++D+ L +  
Sbjct: 1   MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEEQPELIVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
          Length = 234

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++I +D     ++ R   E  G+  ++  +G  A+   +  KPD++++DI +  +
Sbjct: 3   MAKQKILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIMMPVL 62

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ KQ+++ S   ++P+I VTA     D     + G + YI+KP +    +  +K  
Sbjct: 63  DGIEVCKQVRKMS---DLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAV 119

Query: 120 IGEA 123
           +  A
Sbjct: 120 LRRA 123


>gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 223

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D+    ++ +  +E  G+  + T NGM+ + + +   PD++I+DI L +  G E
Sbjct: 2   KILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIMLPKKDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++   +  IP+I +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 62  VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117


>gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 232

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K   V+I +D     ++     +  G+  ++  +G EAL   +  KPD+I++DI +  
Sbjct: 1   MNKQQTVLIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIMMPV 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ KQ+++   + +IP+I +TA     D     + G + YISKP +    +  +K 
Sbjct: 61  LDGLEVCKQVRK---ISDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 VLRR 121


>gi|205351709|ref|YP_002225510.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271490|emb|CAR36308.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326626742|gb|EGE33085.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 229

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNKLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 233

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+E    + R  +E +G+      NG E L     H+PD++++D+ +  I+GLE
Sbjct: 7   RVLVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVMMPGINGLE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K++++   + ++P++ +TA   + +     + G + Y++KP S       +   +  A
Sbjct: 67  VCKRLRQ---VSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRA 123


>gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 228

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+ IVED      L +  +E   Y    + NG E L+  ++ +PD+I++D  L ++S
Sbjct: 1   MKAKIFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKKIEPDLILLDWMLPDLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI + +K+D + + IP+I +TA   + D+      G + Y+ KP S S  +  I   +
Sbjct: 61  GIEICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 229

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED +    L +  +E  GY  +   +G E L    + +PD++++D  L ++S
Sbjct: 1   MQPYILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +PVI +TA   + D  R    G + Y++KP S++  +  I+  +
Sbjct: 61  GIEVCRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +L +K  R  +E  G       +G EALE AR+ + D++++D+ L ++ 
Sbjct: 1   MSKKILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +QI+E     ++P++ +TA +   D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFQVCQQIRE---FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 236

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 67/121 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D +  +++ R  +E +GY  +  ++G  ALELAR   PD+I++D+ +  + G
Sbjct: 1   MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I + ++ D   + IP+I ++A + + D+    + G + YI+KP S    +  +   + 
Sbjct: 61  YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 243

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R+  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
 gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
          Length = 234

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED +  + +    +   GY  L+  +G   L+LA +  PD++++D+ L +++
Sbjct: 1   MNKRILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I+   E +  PVI +TA   + D+    + G + YI+KP S+   +  +K  I
Sbjct: 61  GFDVCRSIRA--EGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANI 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|148658022|ref|YP_001278227.1| response regulator receiver modulated diguanylate cyclase
           [Roseiflexus sp. RS-1]
 gi|148570132|gb|ABQ92277.1| response regulator receiver modulated diguanylate cyclase
           [Roseiflexus sp. RS-1]
          Length = 443

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 68/123 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I +D     +L   ++ + GY  + T+NG + +  A++  PD++I+D+ + ++ 
Sbjct: 1   MTKRILIADDEPAVRQLLELVLRSQGYEVVATQNGDQLVRTAQEWIPDLVIIDLMMPQMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  +Q++ D+    +P++ +TA +   D       G + Y++KP ++   +  I+ ++
Sbjct: 61  GYEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYVTKPFNIPELLARIRAHL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L]
 gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L]
 gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+
Sbjct: 1   MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 228

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K++IV+D+E   ++ +  +E+SGY      +G  A     ++KPD++++D+ L  + 
Sbjct: 4   MLGKILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFFEYKPDLVLLDVMLPHMD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K I+++SE    PVI +TA     D+    + G + YI KP      +  IK  +
Sbjct: 64  GIDVLKWIRKESET---PVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis]
          Length = 236

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L R   PD+I++D  L   S
Sbjct: 1   MSTSILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQILIRAELPDLILVDWMLPGSS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + ++++ D   + IPVI +TA   + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GINLARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+
Sbjct: 1   MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 223

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D+    ++ +  +E  G+  +   NGM+ + + +   PD++I+DI L +  G +
Sbjct: 2   KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIMLPKKDGYD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++   +  IP+I +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 62  VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117


>gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY      +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IP++ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 243

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R+ +PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKTEPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 231

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  K V++V+D E  ++L R  +   GY       G EA+++ +  +PD++++D+ L  I
Sbjct: 1   MSGKHVLVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKIIKSKQPDLMVLDLMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ + +K D E   IP++ +TA   + D     + G + Y++KP S  I    IK  
Sbjct: 61  DGFEVARFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAI 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 230

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 66/119 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E+ G+  +Q  NG EAL L  +  PDVI++D  L  +SG+E+
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +Q+K     + +P+I ++A + + D  R  + G + Y+ KP S+   M  ++  +  A
Sbjct: 69  CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127


>gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2]
 gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D +    + +  ++  G+  +   +G EA+++A + +PD++++DI L    
Sbjct: 1   MSKTILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIMLPNRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++  +    P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREIRKKYDF---PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 236

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EA+    +  PD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K++++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 229

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 243

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     ++    +   GY  +   +G EALE+ R+  PD++++D+ + ++ G  
Sbjct: 8   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVMMPKLDGYG 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 68  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123


>gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597]
 gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564]
 gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564]
 gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597]
          Length = 235

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EALE     +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta]
 gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta]
          Length = 254

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D     K+    +   GY  +   +G EAL L  Q  PDV+I+DI + ++ G  
Sbjct: 16  KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++DS   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 76  VCQEIRKDS---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131


>gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 239

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   ++L    +   GY  L+  +G EAL++A     D+ I+DI L  I G 
Sbjct: 4   KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+   + +  PVI ++A   + D+    + G + YI+KP S+   +  +K     
Sbjct: 64  ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123


>gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
 gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
          Length = 229

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D     ++   ++E +G+ A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K+ K++   ++IP+I +TA   + D+ R  + G + Y++KP S    M  IK  I
Sbjct: 61  GIQIAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6]
 gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6]
          Length = 235

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EALE     +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 232

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I++D +  +++ +  +E +GY  ++  +G E L+LA++  PD+I++D+ L ++ 
Sbjct: 1   MSSRILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + +++       P++ +TA   + D+    + G + Y++KP S+   +  +K  +
Sbjct: 61  GFTVLRILRQ---TMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
 gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
          Length = 236

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  ++  +   A  + R+  PD++++D  L   S
Sbjct: 1   MPANILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWMLPGAS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  ++++ D   ++IP+I +TA   + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GVEFARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 233

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+E    + R  +ET+G+      +G  AL    +  PD++++D+ +  ++GLE
Sbjct: 7   RVLVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQFAERVPDLVVLDVMMPGLNGLE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++++     ++P++ +TA   + +     + G + Y++KP S       +   +  A
Sbjct: 67  VCRRLRQ---TSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRRA 123


>gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 223

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D    ++L    +   GY  ++  +G+ A++    HK D++++DI + E+ G
Sbjct: 1   MYTILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKADLVLLDIMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  K+I+E     ++P+I VTA     D  +    G + YI+KP   +  +  I+  + 
Sbjct: 61  WETCKRIRE---FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 228

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K++IV+D+E   ++ +  +E+SGY      +G  A     ++KPD++++D+ L  + 
Sbjct: 4   MLGKILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQTAFYEYKPDLVLLDVMLPHMD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K I+++    E PVI +TA     D+    + G + YI KP      +  IK  +
Sbjct: 64  GIDVLKWIRKE---CETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 227

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +   K+ +  +E   +      +G EAL    +  PD+II+D+ L EIS
Sbjct: 1   MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++D   ++ P++ +TA   + D+      G + Y+ KP SL   +  IK  +
Sbjct: 61  GEEVCQKIRQD---KQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044]
 gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
 gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae]
 gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
          Length = 229

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa]
 gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa]
          Length = 239

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D     ++    +   GY  +   +G EAL + +   P+++++D+ + ++ G 
Sbjct: 6   KKILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 66  GVCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122


>gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 245

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILVIDDDPAISELVTINLEMAGYDVSQAMDGIKGQALALQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ +TA     D+      G + Y++KP  L   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 235

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EA+EL    +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01]
 gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222]
 gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
 gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01]
 gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222]
 gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
          Length = 229

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 229

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|75761471|ref|ZP_00741436.1| Two-component response regulator yycF [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491032|gb|EAO54283.1| Two-component response regulator yycF [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 173

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    + +  +E  G+  +   +G EA+E A + +PD++++DI L   
Sbjct: 1   MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++I++ SE   +P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 248

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++I+ED E   ++ +  +E  GY      NGME  +L   H+PD+I++D+ + +  
Sbjct: 9   MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMSKKD 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA   + D       G + Y++KP S    +  ++  +
Sbjct: 69  GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIIL 125

Query: 121 GE 122
             
Sbjct: 126 KR 127


>gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima]
          Length = 239

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   ++L    +   GY  L+  +G EAL++A     D+ I+DI L  I G 
Sbjct: 4   KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+   + +  PVI ++A   + D+    + G + YI+KP S+   +  +K     
Sbjct: 64  ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123


>gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+    +L    +   G+   +  NG EAL++    K D++IMDI + E+ G
Sbjct: 1   MTRILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++   +  ++P++ +TA      + +  + G + Y+ KP      +  +K  + 
Sbjct: 61  WELCRELR---DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|163785470|ref|ZP_02180068.1| Response regulator containing a CheY-like receiver domain and an
           HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879260|gb|EDP73166.1| Response regulator containing a CheY-like receiver domain and an
           HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 311

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 69/117 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E N  LF+ +++  GY   +  NG E ++ A + KPDVI+MD+ +  + G  
Sbjct: 8   KILIVDDDERNRLLFKVILKKEGYETTEAENGEEGIKKALEEKPDVILMDVMMPVMDGFT 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK++K D   + IPVI +TA   + ++ +  + G   +++KP+     +  IK ++
Sbjct: 68  ATKKLKSDDRTKHIPVIILTALNEREEKLKGIESGANDFLTKPVDTKELLLRIKNHL 124


>gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 246

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 252

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EA+EL    +PD+II+D+ L EI G
Sbjct: 18  MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 77

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 78  LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 134

Query: 122 E 122
            
Sbjct: 135 R 135


>gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 234

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D +    + +  +   GY      +G EALE   + +PD+I++D+ L ++ G
Sbjct: 1   MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVAREVRK---TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO]
 gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D +    + +  +   GY      +G EALE   + +PD+I++D+ L ++ G
Sbjct: 1   MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVAREVRK---TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 235

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EALE     +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|159037489|ref|YP_001536742.1| response regulator receiver modulated diguanylate cyclase
           [Salinispora arenicola CNS-205]
 gi|157916324|gb|ABV97751.1| response regulator receiver modulated diguanylate cyclase
           [Salinispora arenicola CNS-205]
          Length = 326

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 63/118 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+E   +     +   GY  +  R+G EALE+  QH+PD+ ++D+ +  + GLE+
Sbjct: 11  ILVVDDDEDIARFVEFNLRLHGYEVIHARDGQEALEVIAQHRPDLAVVDLMMPRVDGLEL 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++++ D     +PVI +TA  M  D+      G + Y+ KP   +  +  +   +  
Sbjct: 71  TRRLRADPMTAALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRR 128


>gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 221

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++VED+    K  +  +E  GY       G +AL+   +  PDV+++D+ L E++
Sbjct: 1   MKAKVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+ED    E+PVI +TA     D  R  K G + YI KP  +   +  ++  +
Sbjct: 61  GFTVLERIREDFST-ELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 245

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R  +PD++++D+ + ++ G  
Sbjct: 10  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 125


>gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
 gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V++V+D +L +K  R  +E  GY      +G EAL+LA+++  D+I++D+ L +  
Sbjct: 1   MSRRVLVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVMLPKYD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+E     ++P+I +TA     D+      G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQQIRE---YSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 226

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D    ++L R  +E  GY  + T  G +ALE AR   PD II+D+ L  +SGLE
Sbjct: 2   TILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +++      IP++ +TA + + D     + G + YI+KP S  I +  +K  +  
Sbjct: 62  VCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120


>gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 236

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +  + L +  +ET+GYI     +G EAL+     +P++I++D+ L +  
Sbjct: 1   MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVEDEQPELIVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
 gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
          Length = 232

 Score =  170 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L R   PD+I++D  L   S
Sbjct: 1   MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D   + +PVI +TA   + D+    + G + YI+KP S    M  IK  +
Sbjct: 61  GLAMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 244

 Score =  170 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D +    + +  +   GY      +G EALE   + +PD+I++D+ L ++ G
Sbjct: 11  MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 71  LEVAREVRK---TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 244

 Score =  170 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D +    + +  +   GY      +G EALE   + +PD+I++D+ L ++ G
Sbjct: 11  MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 71  LEVAREVRK---TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 239

 Score =  170 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 68/118 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +   +L R  +E+ GY   +  +G EAL +AR  +P +II+D+ L +I GLE+
Sbjct: 8   ILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDEPLLIILDLMLPKIDGLEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +K D   ++IP+I +TA   + D+    + G + YI+KP S    +  ++  I  
Sbjct: 68  CRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIRR 125


>gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
 gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  170 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++++ED      L +  +E +GY+     +G E LE A   +P++I++D+ L ++ 
Sbjct: 1   MTKTILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAIDLQPNLILLDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQI++  +    P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKQIRQ--QRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
 gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
          Length = 236

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +  + L +  +ET+GYI     +G EAL+  ++ KP++I++D+ L +  
Sbjct: 1   MSQKVLVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKVKEVKPELIVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 233

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 6/125 (4%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   K+++V+D E  + + +  +E  GY  +   +G EA++L ++    ++I+D+ L +
Sbjct: 1   MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G E+  +I+E      +P+I +TA   + D+      G + Y++KP S+   +  +K 
Sbjct: 61  IFGEEVCSKIRE---FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117

Query: 119 YIGEA 123
            I  A
Sbjct: 118 LIRRA 122


>gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 236

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     KL +  +E  G+     R+G+ A++  +  +PDVII+D+ L  + GLE+
Sbjct: 3   ILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQQPDVIILDLMLPGLDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I++    ++  ++ +TA   + D       G + Y+ KP S +  +  ++  +  +
Sbjct: 63  CARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALLRRS 121


>gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 242

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R+  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKANPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
 gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++++ED      L +  +E +GY+     +G E LE A   +P++I++D+ L ++ 
Sbjct: 1   MTKTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIDIQPNLILLDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQI++  +    P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKQIRQ--QRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +  + + +  +   G+  L+  +G +A+ELA   KPD+I++DI L ++ 
Sbjct: 1   MSAKILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++++E       P+I +TA   + D+    + G + YI+KP S    M  +K  +
Sbjct: 61  GFTVCRKLRESI---STPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 246

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     ++    +   GY  +   +G EALE+  +  PD++++D+ + ++ G  
Sbjct: 8   RILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVMMPKLDGYG 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 68  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123


>gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 233

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D      + +   E  GY+     NG EA+ LA+++  D+I++DI + +++
Sbjct: 1   MEEKILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIMMPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++I++     ++PVI +TA   + D+    + G + Y+ KP S+   +  +K  +
Sbjct: 61  GFEALREIRK---TSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 246

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IP++ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
          Length = 234

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D    + L +  +ET+GY  +   +G EALE     +PD+II+D+ L +  
Sbjct: 1   MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K ++ +  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L R  +E   Y+  +  NG EA+    +   D+I++D+ +    G+E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 68  VCRQVREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124


>gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D+    +L    +E +G+  L   +G  AL LAR  +PD++++D+ L +I 
Sbjct: 1   MPQRILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++T+ I+ D  +  +P+I +TA     D     + G + YI+KP +    +  ++  +
Sbjct: 61  GADLTRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
 gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
          Length = 235

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    +    ++  GY      +G EAL++     PD+I++DI L    
Sbjct: 1   MEKKILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIMLPNKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB
           [Rhodopseudomonas palustris CGA009]
 gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  +E+ GY       G +A    ++  PD++++D  L  +S
Sbjct: 1   MAARILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
 gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D      L R  +   GY  ++  NG EAL+  + H   +II+D+ + E+ 
Sbjct: 1   MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++++    +P++ +TA     D+ +    G + Y++KP      +  +   +
Sbjct: 61  GWEVCEEIRKENLA--LPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
 gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
          Length = 235

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  ++  +  EA +  R   PD++++D  L  ++
Sbjct: 1   MPANILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRLRDALPDLVLLDWMLPGMT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  ++++ D   +EIP+I +TA   + D+    + G + YI+KP S       I   +
Sbjct: 61  GIEFARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54]
          Length = 232

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L R   PD+I++D  L   S
Sbjct: 1   MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D   + +PVI +TA   + D+    + G + YI+KP S    M  IK  +
Sbjct: 61  GLAMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
 gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
          Length = 273

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 55/119 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E  E A++  PDV+I D+ +    G  
Sbjct: 47  RLLLVDDEPGLRTAVKAYLEDEGFAVTTANDGEEGWEKAQELLPDVVISDVMMPCCDGYG 106

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D  L   PVI +TA  M  D     + GC+ YI KP      +  ++  +  
Sbjct: 107 LLRKLRADERLGGTPVIFLTAKGMTADRIAGFQAGCDDYIPKPFDPDELVARVRNAVRR 165


>gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 223

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D+    ++ +  +E  G+  +   NGM+ + + +   P+++I+DI L +  G E
Sbjct: 2   KILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIMLPKKDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++   +  IP+I +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 62  VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117


>gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 238

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D +    L +  +E   Y   +  +G EALE A     DVI++D+ + E+ G+
Sbjct: 5   AKILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPEMDGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  
Sbjct: 65  EVCQKLRKQ---KATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  K+++V+D    + + +  +E  GY  +   +G EA++L ++    ++I+D+ L +
Sbjct: 1   MKKLFKILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG E+  +I+E S    +P+I +TA   + ++      G + Y++KP S+   +  +K 
Sbjct: 61  LSGEEVCSKIRESS---NVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKA 117

Query: 119 YIGEA 123
            I  A
Sbjct: 118 LIRRA 122


>gi|153871532|ref|ZP_02000680.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
 gi|152071998|gb|EDN69316.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
          Length = 594

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 67/117 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+DN +N+K+    ++ + +  +  +NG  A+   +  KPD+I++DI +  + G E
Sbjct: 7   KVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQVKNLKPDIILLDIMMPGMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K + E ++IPVI +TA     D+ +  K G   YI+KP+ +   +  +  ++
Sbjct: 67  TCRCLKANEESKDIPVIFMTALESTPDKVKGFKIGAIDYITKPVQMEEVLARVNTHL 123


>gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 237

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   GY      +G EAL+   +  PD+I++D+ L ++ 
Sbjct: 1   MAKKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q+++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVARQVRKS---HDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus]
 gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 237

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I+ED E   ++ +  +E   Y      NG E  EL   H+PD+II+D+ + + +
Sbjct: 1   MKKRILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQKN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA   + +       G + Y++KP S    +  I+   
Sbjct: 61  GWELCEEIRQKS---NVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R  +PD++++D+ + ++ G  
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126


>gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025]
 gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans]
 gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 235

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EAL    +  PD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLAKEGYDTITAFDGREALSKYEEENPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+++++S    +P+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEVRKNS---HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 228

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              ++IVED +   +L    +E  GY  +Q  +G E LELAR  KPD+I++D+ L ++ G
Sbjct: 5   SATILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELARSRKPDLILLDLMLPKMDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + ++++ DS    IP+I +TA     D     + G + Y+ KP ++   +  I+  + 
Sbjct: 65  LAVCRELERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAILR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 247

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL+  R   PD++++D+ + ++ G  
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTDPDLVVLDVMMPKLDGYG 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126


>gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+    +L    +   G+   +  NG EAL++    K D++IMDI + E+ G
Sbjct: 3   MTRILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++   +  ++P++ +TA      + +  + G + Y+ KP      +  +K  + 
Sbjct: 63  WELCRELR---DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLK 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+
Sbjct: 1   MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 238

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   +L +  +E  GY   +  +G  AL  A      ++I+D+ L  + G+E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++   ++  P++ +TA   + +  +  + G + Y+ KP S    +  +K  +  +
Sbjct: 67  VCTRLRQ---VKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123


>gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
 gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 16-3]
 gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
          Length = 229

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 242

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R+ +PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|330831636|ref|YP_004394588.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328806772|gb|AEB51971.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D++   +L  + +  +G+  L    G E  +   QH PD+II+DI +    
Sbjct: 3   MSKQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLAQHSPDLIILDIMMPGED 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +QI+ DS+   +P+I +TA + + D     + G + YI+KP S       IK  +
Sbjct: 63  GFTLCQQIRRDSQ---VPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALL 119

Query: 121 GEA 123
             A
Sbjct: 120 RRA 122


>gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 290

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    ++    +  +G+   +  +G+ AL +A    PD++++D+ L  I G+E
Sbjct: 54  RVLVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAETTVPDLVVLDLMLPGIDGIE 113

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    + +PVI +TA   + D     + G + Y++KP S       ++  +  A
Sbjct: 114 VCRRLREQ---RPVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRRA 170


>gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 243

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE      PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFHNTTPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 230

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +L +K  R  +E  G       +G EAL++A ++  D++++DI L ++ 
Sbjct: 1   MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+E      +P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQHIRE---FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 238

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D E   +L R  +E  GY   +  +G  AL+ A      +I++D+ L  + G+E
Sbjct: 7   RILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVMLPGMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++    +  PVI +TA   + +  +  + G + Y+ KP S    +  +K  +  +
Sbjct: 67  VCTRLRQ---TKSTPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123


>gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  K+++V+D E  + + +  +E   Y  +   +G EA++L ++    +II+D+ L +
Sbjct: 1   MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG E+  +I+E S    +P+I +TA   + D+      G + Y++KP S+   +  +K 
Sbjct: 61  LSGEEVCSKIRESS---NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKA 117

Query: 119 YIGEA 123
            I  A
Sbjct: 118 LIRRA 122


>gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 242

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R+  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSDPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 229

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+      AL L +   PD++++D  L   S
Sbjct: 1   MPANILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAALMLVKNALPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K+++ D   +++P+I +TA + + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GIDIAKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
 gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
          Length = 230

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED E    L RD +E SG+      +G   L  A + + D+II+D+ L  + 
Sbjct: 1   MSKRILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI ++++     +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++
Sbjct: 61  GFEICREVRSQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117

Query: 121 GE 122
             
Sbjct: 118 SR 119


>gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 232

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L R   PD+I++D  L   S
Sbjct: 1   MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D   + +PVI +TA   + D+    + G + YI+KP S    M  IK  +
Sbjct: 61  GLAMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 227

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D     ++    ++   Y  L   NG EAL++   H+ D+II+D+ + ++ G   
Sbjct: 7   VLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVMMPDMDGFTA 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K+I+E      +P++ +TA + + D+ R  K G + Y+ KP S    +  ++  +  +
Sbjct: 67  CKKIREKYM---MPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRRS 122


>gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
 gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
          Length = 229

 Score =  170 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+M+V+D++   +L R  +E  GY  +   +G EA+EL  +  P++I++DI L ++ G +
Sbjct: 5   KIMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIMLPQLDGWQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S+   +P+I +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 65  VCREIRKKSQ---VPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRR 120


>gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4]
          Length = 236

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  ++  GY      +G EA+++A + +PD+I++DI L +  
Sbjct: 1   MDKKILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIMLPKRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCRELRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 236

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D +    + +  +E  G+      +G EALE  ++ KPD++++DI L    
Sbjct: 1   MDKHILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y+ KP S    +  +K  +
Sbjct: 61  GMEVCREVRKQ---YDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 233

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    + +  +E  GY  +   +G  A+ELA   KP++I++DI L    
Sbjct: 1   MSQKILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++    Q IPVI +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GNEVLREVRK---TQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus COL]
 gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300]
 gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819]
 gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus COL]
 gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300]
 gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus TW20]
 gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 04-02981]
 gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819]
 gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21172]
 gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21189]
 gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21193]
          Length = 234

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D    + L +  +ET+GY  +   +G EALE     +PD+II+D+ L +  
Sbjct: 1   MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K ++ +  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|239995182|ref|ZP_04715706.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           ATCC 27126]
          Length = 229

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++VED     ++ + ++E SG+  ++  +   A E   +  PD+I++D  L   S
Sbjct: 1   MSRTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDFDIAQEKICEPYPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +K+    ++IPVI +TA   + D+ R    G + Y++KP S    +  IK  +
Sbjct: 61  GVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42]
 gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42]
 gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens
           LL3]
          Length = 240

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L R  +E   Y+  +  NG EA+++      D++++D+ +    G+E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLMMPGTDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 68  VCRQLREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124


>gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
 gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
          Length = 235

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  +   NG EA+EL    +PD+II+D+ L EI G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 279

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 51  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 110

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 111 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 170

Query: 121 GE 122
             
Sbjct: 171 RR 172


>gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 247

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L  + G
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLILLDLMLPRVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I ++++ D    EIPV+ +TA      +      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTICQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|171911993|ref|ZP_02927463.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 235

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M  K  ++I +D E   +L    +  +GY  ++  +G++ L   R+ KPD I++D+ +  
Sbjct: 1   MSDKSLILIADDEEDVRELVGMNLRRAGYDTVEAADGLQTLAQVRRRKPDAIVLDVMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G  + ++++ED   + IPVI +TA     D     + G + Y+SKP S    +  ++ 
Sbjct: 61  RDGFGVCQELREDESTRHIPVIMLTAKGQTQDRIAGLERGADDYLSKPFSPKELVLRVQA 120

Query: 119 YIGEA 123
            +  A
Sbjct: 121 LLRRA 125


>gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 236

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D++  + L +  +E  GY   Q  +G EALE   ++ PD+++ D+ + E+ G
Sbjct: 1   MKKILVVDDDKTLLTLLKRYLEHRGYQVEQVCSGTEALEACVKNPPDLVVSDVLMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  ++++     + +P I +++ A   D       G + Y++KP++       I+  + 
Sbjct: 61  LEFCRRLRNIPNGRLMPFIFLSSKAELEDRINGHSMGADDYLTKPVAPRELEAKIEALLE 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY      +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IP++ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 243

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL++  +  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
 gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
          Length = 1352

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 47/119 (39%), Positives = 74/119 (62%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +V++ EDNE+N+ +  + ++  GY     RNG EAL++A + +PD+IIMDIQ+ E+ G
Sbjct: 1227 SARVLVAEDNEMNLMVLSEYLQAYGYEVCVARNGREALQVAAEWRPDLIIMDIQMPELDG 1286

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            LE  +Q++  +     P+IAVTA AM GD E+    G   Y++KPISL      I++ +
Sbjct: 1287 LEAIRQLRAQAAYATTPIIAVTALAMPGDREQCLLAGATDYLTKPISLRRLARHIERLL 1345



 Score = 91.3 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+E + +  +     +       +    G  A+E     +PD+I++ +++ + SG EI 
Sbjct: 1100 LIIESSAVVAEQLARYLAEQNIQPVVWLYGNGAVEQVAAMRPDLIVLSVEIPDRSGWEIL 1159

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
              ++ D EL+ IPVI V+        ER    G  AY+ KPI+ ++  + + + 
Sbjct: 1160 ADLQRDPELRRIPVIVVSVVDEP---ERGFTAGAAAYLVKPINRAMLQQALSQI 1210


>gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 247

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED +    + RD +  +G+      +G  AL LA +  PD++++D  L  + G+
Sbjct: 16  RRILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLAAERHPDLVLLDRMLPGLDGV 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++      +PVI +TA   + D     + G + YI+KP S    +  ++  +  
Sbjct: 76  EVCRRLRQ---TMSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRR 132

Query: 123 A 123
           +
Sbjct: 133 S 133


>gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 239

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEI 59
           M   ++IV+DN   ++L  D++E  G+      +G +AL L  Q  +P++I++DI +  +
Sbjct: 1   MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG E+  QI+ +    ++P++ ++A     D+    + G + YI+KP      +  I+ +
Sbjct: 61  SGYELCSQIRREW---DLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAH 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 230

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IVED +   ++    +  +GY  ++  +  EA E      PD++++D  L   SG+
Sbjct: 4   KTILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQLSHKLPDLVLLDWMLPGASGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  +++K D   +++P++ +TA   + D+    + G + YI+KP S    M  IK  +  
Sbjct: 64  EFARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           TA208]
          Length = 235

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    +    +   GY      +G EA+E+  + +PD+I++DI L    
Sbjct: 1   MDKKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 243

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE+     PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112]
 gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112]
 gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 241

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  GY  +   +G  ALE      PD+II+D+ L +I 
Sbjct: 7   MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKID 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+++       +P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 67  GLEVAKRVRAK---HTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 123

Query: 121 GE 122
             
Sbjct: 124 RR 125


>gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens
           LL3]
          Length = 236

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ KK+++V+D +    +    +   GY      +G EA+E+  + +PD+I++DI L   
Sbjct: 1   MMDKKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O11]
 gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O46]
          Length = 234

 Score =  169 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D    + L +  +ET+GY  +   +G EALE     +PD+II+D+ L +  
Sbjct: 1   MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K ++ +  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51]
 gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D E    L R  +E  GY   +  NG EALE  ++    ++I+D+ + EI G ++
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + ++E S   +IP+I +TA   + D     + G + Y+ KP S    +  +K  +  +
Sbjct: 64  CRDVRERS---DIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRS 119


>gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D E    L R  +E  GY   +  NG EALE  ++    ++I+D+ + EI G ++
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + ++E S   +IP+I +TA   + D     + G + Y+ KP S    +  +K  +  +
Sbjct: 64  CRDVRERS---DIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRS 119


>gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1152

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+++  + +  + Y      +G +AL+L  +  PD+I++DI +  ++G E+
Sbjct: 719 ILVVDDEPVNLQVLVNQLHVARYRVRIANSGQQALDLVEEETPDLILLDIMMPHMTGYEV 778

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK--YIGE 122
            ++++      ++PVI +TA +   D  +  + G   Y++KP S  I +  ++    +G 
Sbjct: 779 CQRLRRTYNAAQLPVIMLTARSRVSDVVQGFQAGANDYVAKPFSRDILLARVRTQLQLGR 838

Query: 123 A 123
           A
Sbjct: 839 A 839


>gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 230

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED E    L +D +E SG+      +G   L+   + + D+II+D+ L  + 
Sbjct: 1   MSKRILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI +QI+     +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++
Sbjct: 61  GFEICRQIRSQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117

Query: 121 GE 122
             
Sbjct: 118 AR 119


>gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 235

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY      +G EAL+   +  PD+II+D+ L +I G
Sbjct: 1   MKKILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVAREVRK---THDMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
 gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  +E +GY       G EA    ++  PD++I+D  L  +S
Sbjct: 1   MGARILVVEDEEALTTLLRYNLEAAGYEVETVARGDEADTGLKERIPDLLILDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +E+P+I +TA   + +  R    G + Y+ KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 249

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D     ++    +   GY  +   +G+EALE     KPD+I++D+ +  ++GL+
Sbjct: 6   KILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVMMPRMNGLQ 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++E +    +P+I +TA     D  +  + G + Y+ KP S       I+  +  
Sbjct: 66  VCQTLRESTG---VPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRR 121


>gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 248

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D      L R  +   G+   +  NG EALE+A  H  D+I++D+ L ++ G ++
Sbjct: 16  VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K+I+E      + ++ +TA +   D+      G + Y++KP      +  +   I  +
Sbjct: 76  CKKIREKD---HVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRS 131


>gi|206891156|ref|YP_002249147.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743094|gb|ACI22151.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 356

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+DN   ++L R  ++  GY   +  +G EAL+   +  PD+II+D+ + ++ G 
Sbjct: 6   QTILIVDDNIDTVELLRKRLKAEGYNTEEAYDGEEALKKVYEVYPDLIILDVMMPKMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D   + IP+I +TA +    + +    G + Y+ KP         ++  I  
Sbjct: 66  EVCQRLKTDDRTKFIPIIMLTAKSDVESKVKGFDIGADDYVPKPFDYRELSARVRSLITR 125


>gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
 gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
          Length = 232

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV+D     ++    +E +GY  ++  N  +A  L     P++I++D  L   SGL
Sbjct: 6   KKILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEHPEMILLDWMLPGTSGL 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  +++K D    E+P+I +TA   + ++    + G + YI+KP S    +  +K  +  
Sbjct: 66  EFARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRR 125


>gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 229

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 238

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   +L +  +E  GY   +  +G  AL  A      ++I+D+ L  + G+E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++   ++  P++ +TA   + +  +  + G + Y+ KP S    +  +K  +  +
Sbjct: 67  VCTRLRQ---VKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123


>gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 235

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  GY  +   +G  ALE      PD+II+D+ L +I 
Sbjct: 1   MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+++       +P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAKRVRAK---HTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri]
          Length = 229

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     ++    +E +GY  L+  N  +A  L    KPD+I++D  L   SG+
Sbjct: 4   KSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    + P+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 229

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D     ++   ++E +G+ A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K+ K++   ++IP+I +TA   + D+ R  + G + Y++KP S    M  IK  I
Sbjct: 61  GIQIAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +    + +  +   GY      +G EALE   +  PD+I++D+ L ++ GL
Sbjct: 5   KKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 65  EVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 121


>gi|125974309|ref|YP_001038219.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum ATCC 27405]
 gi|256003472|ref|ZP_05428462.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum DSM 2360]
 gi|281418364|ref|ZP_06249384.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum JW20]
 gi|125714534|gb|ABN53026.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum ATCC 27405]
 gi|255992496|gb|EEU02588.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum DSM 2360]
 gi|281409766|gb|EFB40024.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum JW20]
 gi|316941457|gb|ADU75491.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum DSM 1313]
          Length = 310

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 67/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++++D E   KL  D++   GY  +   NG + +E+ R  KPD++++D+ + ++ G 
Sbjct: 4   KKILVIDDTEFMTKLISDVLMNEGYEVVTASNGRQGIEMVRIEKPDLVLLDVVMPDMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++ED     +P+I +TA   + D+    + G + YI+KP +    +  ++  +  
Sbjct: 64  EVCRILREDEGNNLMPIIMLTAQDNEDDKLTGLELGADDYITKPFNTRELVSRVRNTLRR 123


>gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IV+D E  + L +  ++ +G+  +   +G  A +LA     D+I++D+ L E+ 
Sbjct: 1   MTQRILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K +++       P++ +TA   + D+    + G + Y++KP S    +  ++  +
Sbjct: 61  GLEVCKSLRQLKV--STPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 229

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 67/124 (54%), Gaps = 5/124 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M+K  K+++V+D    ++L +  +E +G+  +   +G EAL+ A   KPD+II+D+ L +
Sbjct: 1   MIKLPKILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E+ + ++       +P++ +TA   + D     + G + Y++KP S    +  ++ 
Sbjct: 61  VDGFEVCRSLRARG---SMPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 ILRR 121


>gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
 gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
          Length = 229

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 249

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 66/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D+    +L    +E +GY   +  +G++   LA Q +PD++++D+ L ++ G
Sbjct: 1   MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+ +    +IP++ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 233

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D    + L +  +ET+GY  +   +G EALE     +PD+II+D+ L +  
Sbjct: 1   MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K ++ +  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|91203277|emb|CAJ72916.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 238

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 68/120 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D   N+KL R ++    Y  ++  +G EAL  AR   PD+I++DI + +I+G
Sbjct: 1   MAKILVADDITQNVKLLRVILTAFKYEVIEAYDGEEALNKARTENPDLILLDIMMPKITG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++ D   + IP+I +TA     D  +  + G + +ISKP + +  +  +K  + 
Sbjct: 61  YEVCKKLRADEATKNIPIIMITALHEMDDRIKGIEAGADDFISKPFNKTELLARVKSLLR 120


>gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica]
          Length = 229

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  ++  +   AL    +  PD++++D  +   S
Sbjct: 1   MTRRILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMIPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I KQ+K D+ +++IPV+ +TA   + D  R  + G + YI+KP S    +  +K  +
Sbjct: 61  GLQIIKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED +   +L    ++  G+      +G EA+ L  + +PDV+++D  L +IS
Sbjct: 1   MQPHVLVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLPKIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +P+I +TA   + D  R    G + YI KP  +      ++  +
Sbjct: 61  GIEVCRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R  +PD++++D+ + ++ G  
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126


>gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 249

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D+    ++    ++ +GY+  +  +G  AL  A  H PD++++D+ L  + GL
Sbjct: 21  ARVLVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLMLPGMDGL 80

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++       +PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 81  EVCRRMRGRGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 137


>gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
 gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
          Length = 247

 Score =  169 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+    +L +  +   GY      +G E  +  ++   ++I++DI L    GL
Sbjct: 9   KKILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIMLPGEDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I ++++  +++   P+I +TA +   D     + G + YI KP +    +  I   +  
Sbjct: 69  SICRRLRATNDM--TPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRR 126


>gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  169 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++++D+    +L R  +E  G+  +   NG +ALE+ R   P+++I+DI L    G +
Sbjct: 6   KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   +  IPVI ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 66  VCREIRK---ISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRR 121


>gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
 gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
          Length = 229

 Score =  169 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321]
 gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321]
          Length = 235

 Score =  169 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EALE     +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
 gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
          Length = 229

 Score =  169 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +L +K  R  +E  G       +G EALE+ +    D+I++D+ L +++
Sbjct: 1   MARKILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLMLPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+E     ++P+I +TA     D+    + G + Y++KP ++      IK  +
Sbjct: 61  GFEVCQQIRE---FSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 230

 Score =  169 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+    +L    +   GY      +G++AL + R+ KP ++I+D+ L  + G E
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVMLPGMDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+ +S    +P++ +TA + + D+    + G + Y+SKP  +   +  ++  +  +
Sbjct: 65  LCRLIRAES---SVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRS 121


>gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
 gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 241

 Score =  169 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED +         +E  GY      +G  ALE   +H  D+II+D+ L ++SG 
Sbjct: 6   KRILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSFDLIILDLMLPKLSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++E      +P+I +TA     D     + G + Y+ KP S    +  ++  +  
Sbjct: 66  RVCRAVRE---TSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRR 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  169 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+
Sbjct: 1   MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  169 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+
Sbjct: 1   MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 242

 Score =  169 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R+ +PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKTEPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1]
 gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1]
          Length = 238

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +   KL R  +E   Y+  +  +G  ALELA  ++ D I++D+ +  + G+E
Sbjct: 6   KVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLMMPGMDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K++++    +  PVI +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 66  VCKELRQK---KSTPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRS 122


>gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 239

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 65/119 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D    ++L +  +E  GY      +G  ALE+ +   PD+I++DI L ++ GL
Sbjct: 4   AKILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMVKDAPPDLILLDIMLPQMDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ + +K+ SE + IP+I +TA   + D     + G + YI KP S    +  +K  + 
Sbjct: 64  EVCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLR 122


>gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 234

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  ++  GY       G +A    ++  PD++++D  L  +S
Sbjct: 1   MSARILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    +  SG+       G EAL+     +PD++++D+ L ++ G  + 
Sbjct: 18  LVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVMLPDLDGFTVV 77

Query: 66  KQIKEDSELQ----EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++++ ++       +PV+ +TA    GD+ +    G + Y++KP SL   +  I+  + 
Sbjct: 78  RRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAILR 137

Query: 122 EA 123
            A
Sbjct: 138 RA 139


>gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 240

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED +   +     +E  GY      +G  ALE   +H  D+II+D+ L ++SG 
Sbjct: 6   KRILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLMLPKLSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++E      +P+I +TA     D     + G + Y+ KP S    +  ++  +  
Sbjct: 66  RVCRAVRE---TSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRR 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 240

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L +  +E   Y   +  NG EA++   Q   D+I++D+ +    G+E
Sbjct: 8   KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDYDLILLDLMMPGTDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  QI+   + +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 68  VCNQIR---DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRS 124


>gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 331

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D     +L R+ ++ SGYI  +  +G  AL        D++I+D+ +  + G
Sbjct: 104 MAKILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLMMPFMDG 163

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   ++++        PVI +TA   + D+    + G + Y+ KP S    +  +K  + 
Sbjct: 164 MTCLREMRA--RHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLN 221

Query: 122 E 122
            
Sbjct: 222 R 222


>gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
 gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
          Length = 235

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EA+EL    +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D E   +L +  +E   ++  +  NG +A+E+A     D+I++D+ L  + G
Sbjct: 4   MARILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLMLPGMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E    +  P+I +TA   + +     + G + Y+ KP S    M  +K  + 
Sbjct: 64  IEVCQRVRE---FKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus epidermidis FRI909]
 gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU144]
 gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU045]
 gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU028]
          Length = 236

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + L +  +ET+GYI     +G EAL+     +P++I++D+ L +  
Sbjct: 1   MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETEQPELIVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 243

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL++  +  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 236

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  ++  GY  +   +G +AL+   + KPD+I++DI L +  
Sbjct: 1   MDKKILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|218782319|ref|YP_002433637.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763703|gb|ACL06169.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 301

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 61/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+ L   + ++++   G+      NG E LE     KPD+I++D+ +  + G
Sbjct: 1   MANILVIDDSRLIAHVAKNMLTARGHEVTVATNGEEGLEAVATIKPDLILLDLIMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++IK      +IPVI +T+ A   D+ R  + G   Y++KP      +  +  ++ 
Sbjct: 61  YAVCEKIKGSPATADIPVIMLTSKAETADKVRGLEAGASDYVTKPFEEGELVARVNTHLR 120


>gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 229

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis CS]
          Length = 232

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L R   PD+I++D  L   S
Sbjct: 1   MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGAS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++++   + +PVI +TA   + D+    + G + YI+KP S    M  IK  +
Sbjct: 61  GLSLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 235

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EA+EL    +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
 gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
          Length = 242

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     ++    +   GY  +   +G EAL    +  PD++++D+ + ++ G  
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFDEADPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 242

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R+  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 233

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  ++  GY  +   +G EAL    + KPD+I++D+ L +I G
Sbjct: 1   MPKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q++       IP+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVARQVRAK---HNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
 gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
          Length = 240

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L +  +E   Y   +  NG EA++   Q   D+I++D+ +    G+E
Sbjct: 8   KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDYDLILLDLMMPGTDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  QI+   + +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 68  VCNQIR---DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRS 124


>gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 226

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 58/122 (47%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D     +     +E SG+      N   ALE    H PDVII DI + ++ 
Sbjct: 1   MTAKLLLVDDEPGVREAVSAYLEDSGFEVTAVANAQAALEYLETHVPDVIITDIMMPQMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    + +++   L  IPVI +TA  M  D  +    GC+AY++KP      +  IK  +
Sbjct: 61  GYAFLETVRQQPHLSHIPVIFLTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAIIKNLL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|332140178|ref|YP_004425916.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550200|gb|AEA96918.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 229

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++VED     ++ + ++E SG+  ++  +   A E   +  PD+I++D  L   S
Sbjct: 1   MSRTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +K+    ++IPVI +TA   + D+ R    G + Y++KP S    +  IK  +
Sbjct: 61  GVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 238

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    L +  ++ +G+      +G E    A + KPD+I++D+ L ++ 
Sbjct: 1   MSKKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K++++   +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKKLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 229

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     +L    +  +G++AL+  +  EA +  R + PD+I++D  L   S
Sbjct: 1   MSAKILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQIRDYAPDLILLDWMLPSTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + KQ++ ++  +++P+I +TA   + D+    + G + YI+KP S    M  I+  +
Sbjct: 61  GVVLAKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 239

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 3/125 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M KK   +++V+D    +++    +   GY  +   NG E +E A++ KP +II+D+ + 
Sbjct: 13  MKKKDIKILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEKPHLIILDVMMP 72

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  ++I+   EL E  +  +TA      +      G + YI+KPI   I +  +K
Sbjct: 73  EMDGIEACEKIRSIPELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKVK 132

Query: 118 KYIGE 122
             +  
Sbjct: 133 ALLRR 137


>gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K KV++V+D     +L    ++  GY   +  NG EAL    +   D +I+DI + E+
Sbjct: 1   MNKYKVLLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+ + K+I++     +IP+I +TA   + +     + G + Y+ KP S    +  ++  
Sbjct: 61  DGIAVCKEIRK---TSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 235

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D      L R  +E  G+   +  +G EALE  R  +PD++++DI L  I G  
Sbjct: 2   RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGWA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ +S   ++PVI +TA     D     + G + Y+ KP +    +  I+  +  
Sbjct: 62  VCRILRRES---DVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117


>gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    L +  ++ +G+      +G E    A + KPD+I++D+ L ++ 
Sbjct: 1   MSKKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K++++   +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKKLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
 gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ +D+    +L R  +E  GY      +G EAL       PD+I++DI + ++ G +
Sbjct: 5   KILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAEAPDLILLDIMMPKLDGWQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++ S   + P+I +TA     D+    + G + Y+ KP      +  +K  +  A
Sbjct: 65  VCREIRKKS---DCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRRA 121


>gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166]
          Length = 229

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     ++    +E +GY  L+  N  +A  L    KPD+I++D  L   SG+
Sbjct: 4   KSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    + P+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +L +K  R  +E  G       +G EAL++A ++  D++++DI L ++ 
Sbjct: 1   MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+E      +P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQHIRE---FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
 gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
          Length = 229

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
 gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
          Length = 223

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 69/122 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED++   +L    ++  GY     ++G+EA EL +  K D+I++D+ L  ++G
Sbjct: 1   MARVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLMLPGVNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++++     ++ P+I +TA   +  +    + G + Y++KP S+   +  I+  + 
Sbjct: 61  LDLCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 242

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EALE  R+ +PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1361

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 71/119 (59%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++ V+D+  N+ +    +E +G    +  NG++ALE+ +QH  D+I+MDI + E++G E
Sbjct: 1241 TILAVDDDPRNLFVLTASLEQNGAEVHKALNGLKALEILKQHSVDLILMDIMMPEMNGYE 1300

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +I+ +    EIP+IA+TA A+K D+++    G   Y+SKP+   I +  ++ +I  
Sbjct: 1301 AIHEIRANPSYCEIPIIALTAKALKEDKQKCLDAGANDYLSKPVDYEILINMVQTWIKR 1359



 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++++D+ L ++    + +  G   L   +G E L +A+ H P  II+D+ L ++ G E
Sbjct: 977  KILVIDDDLLFVENISYINQAQGLDTLSAHDGREGLRVAKSHHPVGIILDLGLPDMRGEE 1036

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAYISKPISLSIFMETIKKYI 120
            + +Q+K   EL+ IPV  ++A     D++R     G   ++ KP++ +      +  +
Sbjct: 1037 VLEQLKRSPELRHIPVYIISAK----DKQRALVDQGAIGFLQKPVNDAQIATAQRTLL 1090



 Score = 43.6 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 15   MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74
              L  +    +G   L  +   E L     H  D+ + D  ++ ++ +E+ +Q+++    
Sbjct: 1110 QDLIAEKAMNAGMQQLVVQKPEEVLAKTAGHPFDLFLTDYDIEGMTCVELCQQVRQHQ-- 1167

Query: 75   QEIPVIAVTAFAMKGDE 91
             E+P+I  ++ ++   +
Sbjct: 1168 PELPIIIYSSRSLNEQQ 1184


>gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 234

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 70/121 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++ +D    ++L    ++ +GY  L+  +G+ ALE ARQ  P +I++D+ L E+SGL
Sbjct: 8   KRILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSGL 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K +K ++    IPVI +TA A + D     + G + Y++KP S    +  +K  +  
Sbjct: 68  EVCKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRR 127

Query: 123 A 123
           A
Sbjct: 128 A 128


>gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
 gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
          Length = 235

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EA+EL    +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
 gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
          Length = 235

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D +    + +  +   GY  +   +G EAL+      PD+II+D  L E+ G
Sbjct: 1   MKKVLVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDENPDLIILDWMLPELEG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++ S    +P+I ++A   + D+    + G + Y++KP S    +  IK ++ 
Sbjct: 61  LEVAKEIRKSS---HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 230

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++++D+    +L R  +E  G+  +   NG +ALE+ R   P+++I+DI L    G +
Sbjct: 8   KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   +  IPVI ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 68  VCREIRK---ISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRR 123


>gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 230

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D+   + +    +E +GY  L   +G+ AL+ +RQ  PD+I++DI L E+ 
Sbjct: 1   MPARILIVDDDPDILDVTGFAVEKAGYETLFASDGLNALKASRQQLPDLIVLDIGLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++ S   ++P++ +TA   + D     + G + Y++KP S    +  IK  +
Sbjct: 61  GLEVCREIRKSS---DVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
 gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
          Length = 256

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+    +L    +   GY      +G++AL   R  KP ++I+D+ L  I G E
Sbjct: 31  KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+ +S    +P++ +TA + + D+    + G + Y+SKP  +   +  +K  +  +
Sbjct: 91  LCRLIRTES---SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRS 147


>gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D+    +L    +E  GY  L   NG+ A++  +   P ++++DI L  I G +
Sbjct: 6   KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   +  IP+I +TA     D+    + G + Y+ KP      +  +K  +  
Sbjct: 66  VCREIRK---VSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121


>gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13]
          Length = 233

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  ++  GY      +G EA+    + +PD+I++DI L +  
Sbjct: 1   MEKKILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 243

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL+   +  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKADPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
 gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
          Length = 228

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED     ++   ++E  GY A++  +   A++   +  PD++++D  L   S
Sbjct: 1   MSRRILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKIAEPYPDMVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ K+IK D   + IP+I +TA   + D+ +  + G + YI+KP S    M  ++   
Sbjct: 61  GLQLAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVF 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 246

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D    +   R  +E  G       NG EA+E  R+  PD++++DI +  + G E 
Sbjct: 9   VLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIMMPVMDGFEA 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+      ++PVI +TA   + D  R  + G + Y+ KP S    +  I+  +  
Sbjct: 69  LRRIRS---FSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRR 123


>gi|332994441|gb|AEF04496.1| putative DNA-binding response regulator PhoB [Alteromonas sp. SN2]
          Length = 229

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++VED     ++ + ++E SG+  ++  +   A E   +  PD+I++D  L   S
Sbjct: 1   MSRTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +K+    ++IPVI +TA   + D+ R    G + Y++KP S    +  IK  +
Sbjct: 61  GVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELIARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|259909297|ref|YP_002649653.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|224964919|emb|CAX56442.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|283479352|emb|CAY75268.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           pyrifoliae DSM 12163]
          Length = 229

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K++++VED     ++   ++E + Y  ++  +   A+ L  +  PD+I++D  L   S
Sbjct: 1   MVKRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEAGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 238

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 68/123 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED +   +L R+++ET G+I     NG +AL +    +PD++I+D+ L  + 
Sbjct: 1   MKPTILIVEDEKEIAQLVRNMLETEGFICETLSNGADALRVVTVLQPDLVILDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+  +I++ S  ++  ++ +TA A + D       G + Y++KP S    +  ++  +
Sbjct: 61  GLEVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRALL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 242

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL+  R+  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D    +   R  +E  G       NG EA+E  R+  PD++++D+ +  + G E 
Sbjct: 9   VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+      ++PVI +TA   + D  R  + G + Y+ KP S    +  I+  +  
Sbjct: 69  LRRIRS---FSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRR 123


>gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+E   ++ +  +E SGY      NG EA E   ++KPD++++DI L  I G++
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++DS    IP+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 67  VLKWIRKDS---TIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122


>gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
 gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GVNFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 327

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+    ++    +  +G    +  +G  AL  A  H+PD++++D+ L  + GLE
Sbjct: 18  HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E      +PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 78  VCRRMRERHP---VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133


>gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium botulinum H04402 065]
          Length = 228

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+E   ++ +  +E SGY      NG EA E   ++KPD++++DI L  I G++
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++DS    IP+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 67  VLKWIRKDS---TIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122


>gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 228

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I++D++   +L        G+      NG E +     + P+++I+DI L    G +
Sbjct: 6   KILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIMLPGKDGWD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+  S   +IP+I +TA +   D+    + G + Y+ KP      +  +K  +  
Sbjct: 66  ICREIRRMS---DIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRR 121


>gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family
           [Nitrosospira multiformis ATCC 25196]
          Length = 234

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  + +    T+N  EA+++     PD++++D  L  +S
Sbjct: 1   MAATILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKIINHTLPDLVLLDWMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  + ++  +  ++IP+I +TA A + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GADFARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|302338300|ref|YP_003803506.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635485|gb|ADK80912.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 242

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 67/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D E  +KL    + + GY  L    G E LE AR H PD+II+D+ L  I G+
Sbjct: 10  KTILVVDDEEHVVKLLSMNLTSRGYDCLCAYTGEEGLEQARSHHPDLIILDVMLPGIDGI 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + +K D   Q IPV+ ++A +   D+    +GG + YI+KP SL      ++  + +
Sbjct: 70  EVCRLLKSDPRTQLIPVLMLSAKSEGIDKIHGLEGGADDYITKPFSLRELFLRVEASLRQ 129


>gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
 gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116]
 gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
          Length = 229

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
 gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
          Length = 229

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 243

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL++  +  PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 234

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D     +  +  +E S +      NG E  EL +++ PD++I DI + ++ 
Sbjct: 5   MSARLLLVDDEPGLREAVQAYLEDSNFNVDVASNGREGWELLQKNPPDLVISDIMMPQVD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   Q++ED   + +PV+ +TA  M  D  +  + GC+AYISKP      +  +   +
Sbjct: 65  GYQFLSQMREDPRFKAMPVVFLTAKGMTTDRIQGYQAGCDAYISKPFDPDELVAIVTNLL 124

Query: 121 -GEA 123
              A
Sbjct: 125 VRRA 128


>gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 231

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++++ED      L    +++ GY     R+G + L+L +  +PD++++D+ L  +S
Sbjct: 1   MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K +K   E   IP+I +TA   + D     + G + Y+ KP S    M  IK  +
Sbjct: 61  GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 236

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D    + + +  +   GY  +   NG EAL    + KPD+I++D  + E+S
Sbjct: 1   MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++ S+   IP+I +TA   + D+    + G + Y+ KP SL      IK  +
Sbjct: 61  GIEVLREIRKKSQ---IPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W]
 gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II]
          Length = 235

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D    + L +  +E   Y      +G EAL+  R    D II+D+ L  +SG
Sbjct: 1   MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPSLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++T++I+ED    + P++ +TA   + D+    + G + Y++KP S    +  IK    
Sbjct: 61  LDVTRKIREDKI--QTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIER 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 230

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E+ G+  +Q   G EAL L  +  PDVI++D  L  +SG+E+
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGTGDEALMLVEETGPDVIVLDWMLPSVSGIEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +Q+K     + +P+I ++A + + D  R  + G + Y+ KP S+   M  ++  +  A
Sbjct: 69  CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127


>gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
 gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
          Length = 240

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D E  ++L    ++  GY      +G  AL+LA     D I++DI L ++ 
Sbjct: 1   MKKHILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I+  S+  + P++ V+A   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKRIR--SKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
 gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+E   ++ +  +E SGY      +G EA E   ++KPD++++DI L  I G++
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++DS    IP+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 67  VLKWIRKDS---TIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122


>gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae]
          Length = 229

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 243

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     ++    +   GY  +   +G EA+    +  PD++++D+ + ++ G  
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D+    +L    +E  GY  L   NG+ A++  +   P ++++DI L  I G +
Sbjct: 6   KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   +  IP+I +TA     D+    + G + Y+ KP      +  +K  +  
Sbjct: 66  VCREIRK---VSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121


>gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia
           enterocolitica W22703]
          Length = 279

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 51  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 110

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +   ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 111 GIQFIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 170

Query: 121 GE 122
             
Sbjct: 171 RR 172


>gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 229

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D E   ++    +   GY   +  +G EAL   R    D+II+D+ + ++ G+ 
Sbjct: 5   RVLVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESWDLIILDVMMPKMDGIA 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+    + ++P+I +TA   + D     + G + Y+ KP S    +  IK  +  A
Sbjct: 65  VCQEIR---RVSKVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRA 121


>gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
 gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
          Length = 237

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +  + L +  +E SG+  +   +G E L       PD++++D+ L ++ 
Sbjct: 1   MSQKVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K ++  SE  ++P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GVEVCKAVR--SEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 229

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D     ++   ++E +G+ A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K+ K++   + IP+I +TA   + D+ R  + G + Y++KP S    M  IK  I
Sbjct: 61  GIQIAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 242

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL   R  +PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18]
 gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 234

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D    ++L    +  +G+  +   NG EALE A    PD+I++D+ +  + G 
Sbjct: 5   AKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPGMDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T++++E+      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 65  EVTRRLRENGTT--TPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRR 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 229

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
 gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
          Length = 231

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K V+IV+D     ++    +E +GY  L+  N  +A  L    KPD++++D  +   SG
Sbjct: 4   SKSVLIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMMPGASG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  +++++D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  + 
Sbjct: 64  IEFARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLR 123

Query: 122 E 122
            
Sbjct: 124 R 124


>gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 236

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G EAL       PD+I++D+ L  + G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLMLPGMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++  S    +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  EVCREVRHKS---NVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRR 121


>gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
 gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 228

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D     ++ R  +E+S +  ++  +  EA +L     PD+I++D  L   SG
Sbjct: 1   MTTILVIDDEPDIREVMRFALESSDFRVMEAGHADEARKLLSNETPDLILLDWMLPGRSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q+K++ + + IP+I ++A   + D  +    G + YI+KP S    +  +K  + 
Sbjct: 61  LELAQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +L +K  R  +E  G       +G EAL  A+Q + DVI++D+ L  ++
Sbjct: 1   MSKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVMLPRMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+E      +PVI +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQQIRE---FSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  V++V+D     +L    ++  GY   +  NG EAL        D +++DI + E+
Sbjct: 1   MSKYNVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4]
 gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 236

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY      +G EAL    + +PD+II+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K++++      IP+I ++A   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|292487424|ref|YP_003530296.1| phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|292898668|ref|YP_003538037.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291198516|emb|CBJ45624.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552843|emb|CBA19888.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|312171528|emb|CBX79786.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora ATCC BAA-2158]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E + Y  ++  +   AL L  +  PD+I++D  L   S
Sbjct: 1   MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDSALSLLIEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis]
          Length = 238

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+I +D +    L +  ++   Y      +G +AL L  Q+   ++I+D+ + +I G+E
Sbjct: 5   RVLIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    +P++ +TA  ++GD+      G + YI+KP S++  +  IK  +  
Sbjct: 65  VCRRMRNHT---NVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120


>gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL+  R   PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTIPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 244

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D     +  R  +   GY      +G++AL+ A  + PD+I++DIQ+  + GL
Sbjct: 9   QRILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDIQMPRMDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++    +   PV+ +TA    GD       G + Y+ KP  L      ++  +  
Sbjct: 69  TAARRLRASGSV--TPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 126

Query: 123 A 123
           +
Sbjct: 127 S 127


>gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 232

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D    ++L +  ++  GY   +  NG  AL++ + +K D++I+DI + +  G
Sbjct: 1   MKNILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDIIKNNKIDLVILDIMMSDKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ +   + +PVI ++A + + D     + G + YI+KP S+   +  +K    
Sbjct: 61  YEVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
 gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINLIKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 232

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V+I +D     ++     +  G+  ++  +G EAL   +  KPD+I++DI +  + G 
Sbjct: 5   QTVLIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGKPDIILLDIMMPVLDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ KQ+++   + ++P+I +TA     D     + G + YI+KP +    +  +K  +  
Sbjct: 65  EVCKQVRK---ISDVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
 gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +L +K     +E  G       +G EALE A++ + D++++D+ L ++ 
Sbjct: 1   MSKKILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +QI+E     ++PV+ +TA +   D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
 gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
          Length = 235

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D    + L    +E  GY      +G EALE+A     D I++D+ L  + G
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPHMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EITK+++++     IP+I +TA     D     + G + Y+SKP S    +  IK    
Sbjct: 61  IEITKRLRQEKV--NIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIAR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
          Length = 226

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   +++T G+  +   +G +A+  A++H PD+I++D+ L  +S
Sbjct: 1   MTPKILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + ++E      +P++ +TA     D     + G + YI+KP      +  ++  +
Sbjct: 61  GIDVCRTVRE---FSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 228

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K++I++D+E   ++ +  +E+SGY      +G  A     ++KPD++++D+ L  + 
Sbjct: 4   MLGKILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVMLPHMD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K I++DSE    PVI +TA     D+    + G + YI KP      +  IK  +
Sbjct: 64  GIDVLKWIRKDSET---PVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  +E+ GY       G +A    ++  PD++++D  L  +S
Sbjct: 1   MAARILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRMKERIPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB,
           [Edwardsiella ictaluri 93-146]
 gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative
           [Edwardsiella ictaluri 93-146]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED      +   ++E +GY  L+  +   AL    +  PD+I++D  L   S
Sbjct: 1   MTIRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ KQ+K +   ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLIKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis
           HI4320]
 gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis HI4320]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   AL       PD++++D  +   S
Sbjct: 1   MARRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ KQ+K ++  ++IP+I +TA   + D+ +  + G + Y+ KP S    +  +K  +
Sbjct: 61  GIQVIKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 245

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 63/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED++   +L R+ +E   +  + T +G   L + ++  PD+I++D+ L ++ G
Sbjct: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+  +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130

Query: 122 E 122
            
Sbjct: 131 R 131


>gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED E    L R  +E+ GY       G EA    R+  PD++I+D  L  +S
Sbjct: 1   MPAHILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRLRESVPDLVILDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +PVI +TA   + +  R    G + Y+ KP S+   +  ++  +
Sbjct: 61  GIELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
 gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY  ++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKLSEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 232

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 72/121 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D +  ++L +  +   GY   +  +G++ALE+ + +K D++I+DI + +  G
Sbjct: 1   MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEILKHNKVDLVILDIMMSDKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ + + + +PVI ++A + + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 61  YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
 gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E  G+      NG EAL L  +  PD+I++D  L  +SG+E+
Sbjct: 8   VLLVEDEPAQREVLSYNLEADGFRVTTAENGEEALLLVDEAAPDIIVLDWMLPNVSGIEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +Q+K  ++ + +P++ ++A + + D  R  + G + Y+ KP S+   M  ++  +  +
Sbjct: 68  CRQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRRS 126


>gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 225

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++I+ED+E  +++ +  +   GY+      G   L+LAR+H+PD+II+D  L  + 
Sbjct: 1   MKERILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++    L   P++ +TA     D  +    G + Y++KP  L   +  I+  +
Sbjct: 61  GLEVCQRLR---TLCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
 gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
          Length = 235

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D +    + +  ++  GY      +G+EALE   + +P++I++DI L +  
Sbjct: 1   MDKRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
 gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
          Length = 235

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D +    + +  ++  GY      +G+EALE   + +P++I++DI L +  
Sbjct: 1   MDKRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S]
          Length = 237

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +    + +  +   G+      +G EALEL  + +PD+I++DI L    G+
Sbjct: 4   KKILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120


>gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 223

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D +  + L    +   GY  ++  +G+ A++    +K D++++DI + E+ G
Sbjct: 1   MYTILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  K+I+E      +P+I VTA     D  +  K G + YI+KP   S  +  I+  + 
Sbjct: 61  WETCKRIRE---FSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 234

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++VED    ++L +  +++ GY  +   +G EA  L  +   D+ I+D  + +IS
Sbjct: 1   MAAKIIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEAELLLAEQSYDLAILDWMIPKIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  +E Q +P+I +TA   + D  R    G + Y++KP S+   M  IK  +
Sbjct: 61  GIELCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 238

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +E  GY      +G  A++   +  PD++I+D+ L +I 
Sbjct: 1   MPKKILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREIRKK---HDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED +    L +  +E  GY     R+G +AL  A +  PD++++D  L ++S
Sbjct: 1   MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E   +P+I +TA   + D  R    G + Y+ KP S++     I+  +
Sbjct: 61  GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 232

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 6/125 (4%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE- 58
           +K+  ++IV+D    ++L +  +  SGY+     +G  A+E+      D++I+DI L   
Sbjct: 1   MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G E+ K+I+E     +IP+I +T  A + D  R    G + Y++KP S+   +  +K 
Sbjct: 61  LNGFEVCKRIRE---FSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKA 117

Query: 119 YIGEA 123
            +  +
Sbjct: 118 ILRRS 122


>gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 236

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +  + L +  +E +GYI     +G EALE      P++I++D+ L +  
Sbjct: 1   MSQKVLVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATNPELIVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato Max13]
 gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato K40]
 gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  ++  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84]
 gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84]
          Length = 234

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EALE+     PD++I+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P++ ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D +L +K  R  +E  G       +G EALE A++ + D+I++DI L +++
Sbjct: 1   MSKRVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIMLPKLT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI+E      +P+I +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GLEVCQQIRE---FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
 gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
          Length = 233

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I+ED E    L R  +E+ GY       G EA    R+  PD++I+D  L  +S
Sbjct: 1   MPARILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRLRESVPDLVILDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +PVI +TA   + +  R    G + Y+ KP S+   +  ++  +
Sbjct: 61  GIELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 228

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D     +L    +E +G+      +G EA     +  PD++++D  L   S
Sbjct: 1   MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++   L+ +P+I ++A + + ++    + G + YI+KP S    +  IK  +
Sbjct: 61  GIELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 234

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++ +D+    ++    ++ + Y  ++  NG EA+ L    KPD+I++DI + +I G E
Sbjct: 5   KVLVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSKPDIILLDIMMPDIDGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I++      +P+I +TA   + D     + G + Y++KP S    +  IK     
Sbjct: 65  VCKEIRKK---ANVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRR 120


>gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 234

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L R+ +E   +     R G++ALE   Q +PDVI++DI L E+ GLE+
Sbjct: 3   ILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFFGQLQPDVIVLDIMLPELDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 63  CTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRRS 121


>gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
 gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
          Length = 228

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVED     ++    +E  G+   +  NG E L    ++ PDVI++D  +  +SG+E
Sbjct: 6   HVLIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGLLCVEENAPDVIVLDWMMPNLSGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K   E + IP+I ++A + + D+ R  + G + Y+ KP S+S  M  ++  +  
Sbjct: 66  VCRRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRR 124


>gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630]
 gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291]
 gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08]
 gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07]
 gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile]
 gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291]
 gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08]
 gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 70/122 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++++D    ++L +  +E S Y    + +G +    A++ KPD+I++D  L  IS
Sbjct: 1   MNTKVLVIDDEMHIVELLKFNLEVSNYEVSYSYDGFDGFIKAKEIKPDLILLDWMLPNIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+ D +L+ IPVI +TA  M+ D+    + G + YI+KP S+   +  I   +
Sbjct: 61  GIEVLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
 gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    ++  G+  L   NG EAL +  +  PD+I++D  +  +SG+E
Sbjct: 7   TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVSEMPPDIIVLDWMMPNVSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+K  SE + IP+I ++A + + D  R  + G + Y+ KP SL   M  ++  +  
Sbjct: 67  VCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125


>gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +  + L ++ +E  G+      +G+EAL+L  + K D++++DI + E+SG +
Sbjct: 5   RILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEVSGFD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E  +   IPVI +TA A + D+    + G + YI+KP SL      I+  +  A
Sbjct: 65  VLRRIREKIQ---IPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRA 121


>gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 238

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D E   +L R  +E  GY+  +  +G  AL+ A      +I++D+ L  + G+E
Sbjct: 7   RILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDYSIILLDVMLPGMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++    +  PVI +TA   + +  +  + G + Y+ KP S    +  +K  +  +
Sbjct: 67  VCTRLRQ---TKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123


>gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 238

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D E   +L +  +E   +   +  NG  ALE+A + + DVI++D+ + ++ G+
Sbjct: 5   ARILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLMMPKLDGM 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +++++    +  P++ +TA   + +     + G + YI KP S    +  +K  +  
Sbjct: 65  QVCEELRK---TKATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRR 121

Query: 123 A 123
           A
Sbjct: 122 A 122


>gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 234

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EA+EL    KPD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++KV++V+D +L +K  +  +E          +G EALE A++++ D+I++D+ L  ++G
Sbjct: 1   MRKVLVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVMLPGLTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E      +P+I +TA     D+    + G + YI+KP ++      IK  + 
Sbjct: 61  FEVCQAIRE---FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 243

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     ++    +   GY  +   +G EALE  R  +PD++++D+ + ++ G  
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|257129263|gb|ACV42481.1| putative adenylate/guanylate cyclase [Lyngbya majuscula 19L]
          Length = 1156

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
           K++IV+D  +N ++  + +    Y      NG+EALE+     +PD+I++D+ +  ++G 
Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  +I++     E+PVI +TA     D       G   Y++KP S    +  IK ++ 
Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLR 864


>gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
 gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
          Length = 228

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED     ++   ++E  GY A++ ++    L    +  PD++++D  L   S
Sbjct: 1   MPRRILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKIAEPYPDMVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K+IK D   + IP+I +TA   + D+ R  + G + YI+KP S    M  ++   
Sbjct: 61  GIQLAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVF 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|300715551|ref|YP_003740354.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
 gi|299061387|emb|CAX58497.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E + Y  ++  +   A+ L  +  PD+I++D  L   S
Sbjct: 1   MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVNLLIEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|158338214|ref|YP_001519391.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
 gi|158308455|gb|ABW30072.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
          Length = 545

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +M+V+D   N+++  + + ++GY      +G  AL+    H P +I++DIQ+  + G E+
Sbjct: 7   IMVVDDTPANLEVISETLSSAGYRVAAAISGERALKRLHTHPPALILLDIQMPVMDGFEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +QIK ++    IP+I +TA +         + G   YISKP   +  +  ++ ++
Sbjct: 67  CRQIKANAATANIPIIFITARSDTQSILHGFEMGAVDYISKPFQEAELLARVRTHL 122


>gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 240

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQLQE 58
           M K+++++ED+    +L  D +  + Y       G E L++  A++   D+II+D+ L +
Sbjct: 1   MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60

Query: 59  ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G+++ ++I+  ++S+  ++P++ +TA     D     + G + YISKP      +  I
Sbjct: 61  MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120

Query: 117 KKYIGE 122
           +  +  
Sbjct: 121 RAVLRR 126


>gi|86605678|ref|YP_474441.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554220|gb|ABC99178.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 374

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 56/120 (46%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+D+     + +  +E  GY       G+E LE A    P +II D  + ++ G
Sbjct: 1   MTAILIVDDDPTIRLVLKRSLERQGYTVEMASGGLEGLEKAHLLTPGLIICDWMMPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++IK D +      I +TA     D  +    G + ++SKPI  +     ++  + 
Sbjct: 61  LEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGLR 120


>gi|329576541|gb|EGG58048.1| putative transcriptional regulatory protein WalR [Enterococcus
           faecalis TX1467]
          Length = 159

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +   ++ +  +   GY      +G EALE   + +PD+II+D+ L ++ G
Sbjct: 1   MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1566

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN       + L+    Y      +G+  LE   +  PD+++ D+ +  + G E
Sbjct: 397 RILLADDNADMRDYIKRLLTDL-YEVETVSDGIAVLEALARELPDLVLTDVMMPGLDGFE 455

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++ +   ++IP+I ++A A +       K G + Y+ KP S    +  ++ ++
Sbjct: 456 LLRELRANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHL 512



 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+D+         L+  +G   +   +  EAL++    KPDV++ DI + EI G  +
Sbjct: 1447 ILVVDDDADTRDFLGFLLREAGAKVVTLASATEALQVLAGSKPDVLLCDIGMPEIDGYML 1506

Query: 65   TKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
             KQ++     S  + I  IA+TA+A   + E+  K G + +ISKPI     +
Sbjct: 1507 IKQVRIWENQSGEKPILAIALTAYAGDLNHEKALKAGFQHHISKPIKPEELL 1558


>gi|332712429|ref|ZP_08432355.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332348724|gb|EGJ28338.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1156

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
           K++IV+D  +N ++  + +    Y      NG+EALE+     +PD+I++D+ +  ++G 
Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  +I++     E+PVI +TA     D       G   Y++KP S    +  IK ++ 
Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLR 864


>gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 282

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D +    + +  +E  GY  +   +G  A+ELA   KPD+I++D+ L    
Sbjct: 44  MQRRILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEKPDLILLDLMLPVKD 103

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++++        P+I +TA   + D+    + G + Y++KP      +  +K ++
Sbjct: 104 GMDVCREVRGKL---NTPIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHL 160

Query: 121 GE 122
             
Sbjct: 161 RR 162


>gi|78101053|pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
 gi|78101054|pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
 gi|78101055|pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
          Length = 125

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|114332048|ref|YP_748270.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114309062|gb|ABI60305.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 240

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 61/123 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED     +L    +  + YI +   +  +A+    +  PD+I++D  L   S
Sbjct: 1   MSATVLVVEDEPAIQELIAYNLRNANYIVVCVNSAEQAVVKINEILPDLILLDWMLLGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  + ++ D   + IPVI +TA   +GD+    + G + YI+KP S    +  IK  +
Sbjct: 61  GIEFARSLRRDPRTRSIPVIMLTARVEEGDKVSGLEAGADDYITKPFSPRELIARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 233

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G +AL+      PD+I++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+ +S   ++P+I ++A     D+    + G + YI KP      +  ++  +  
Sbjct: 65  QVCREIRHNS---DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRR 121


>gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++ +D E    L    +E  GY  +   NG+EA+E  ++    ++++D+ + E+ G
Sbjct: 5   MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L    +I+E      +P+I +TA + + D     K G + YI+KP S    +  I+  + 
Sbjct: 65  LTACMRIRE---FSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D+   ++L    +E +G+  L   +G  AL LAR  +PD++++D+ L ++ 
Sbjct: 1   MPQRILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++T+ I+ D  L  +P+I +TA     D     + G + YI+KP +    +  ++  +
Sbjct: 61  GADLTRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio cholerae LMA3894-4]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E  GY A++  +   A+    +  PD++++D  L   S
Sbjct: 1   MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K +   + IPV+ +TA   + D+ R  + G + YI+KP S    +  +K  I
Sbjct: 61  GINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
 gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
          Length = 299

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D     +L R+ ++ +GY+  +  +G  AL L      D++I+D+ +  + G
Sbjct: 72  MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   ++++        PVI +TA   + D+    +GG + Y+ KP S    +  +K  + 
Sbjct: 132 MTCLREMRA--RHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLN 189

Query: 122 E 122
            
Sbjct: 190 R 190


>gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D +  + + +  +   G+  ++  +G +A+E A + KPD+I++DI L ++ 
Sbjct: 1   MNAKILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIMLPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++++       P+I +TA   + D+    + G + YI+KP S    M  +K  +
Sbjct: 61  GFTVCRKLRQ---TISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda FL6-60]
          Length = 229

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED      +   ++E +GY  L+  +   AL    +  PD+I++D  L   S
Sbjct: 1   MSIRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ KQ+K +   +EIPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D+    +L    +   G    +  NG EAL++    K D++IMDI + E+ G
Sbjct: 1   MARILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++   +  ++P++ +TA     ++ +    G + Y+ KP      +  +K  + 
Sbjct: 61  WELCRELR---DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 238

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   +L +  +E  GY   +  +G  AL +A     D+I++D+ L  I G+E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVMLPGIDGVE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++   ++  PVI +TA   + +  +  + G + Y+ KP S    +  +K  +  +
Sbjct: 67  VCSRLRQ---VKATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRS 123


>gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Psychrobacter sp. 1501(2011)]
          Length = 240

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQLQE 58
           M K+++I+ED+    +L  D +  + Y       G E L++  A++   D+II+D+ L +
Sbjct: 1   MSKQILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60

Query: 59  ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G+++ ++I+  ++++  ++P++ +TA     D     + G + YI+KP      +  I
Sbjct: 61  MDGMQVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120

Query: 117 KKYIGE 122
           +  +  
Sbjct: 121 RAVLRR 126


>gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
 gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +  + L +  ++ +GY  +   +G E  +LA   KPD+I++D+ L ++ 
Sbjct: 1   MDKKILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++       P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKQLRQQKIA--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|269925905|ref|YP_003322528.1| response regulator receiver protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789565|gb|ACZ41706.1| response regulator receiver protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 278

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 66/119 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D    + L ++ +   GY      +G  AL+L R   PD++I+DI L  I G
Sbjct: 1   MSRILVVDDEPALLDLLKEHLTMEGYTVDTAPSGEYALDLMRIRPPDLVILDIMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+  +++ D +LQ+IPVI +TA ++  D     + G E Y++KP  +   +  I+  +
Sbjct: 61  YEVCTRMQADPKLQDIPVIMLTAKSLTSDLVAGYESGAEDYVTKPFDIDELLIRIRARL 119


>gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 234

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  ++  GY       G +A    ++  PD++++D  L  +S
Sbjct: 1   MNARILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
 gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
          Length = 229

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    ++  G+  L   NG EAL +  +  PD+I++D  +  +SG+E
Sbjct: 7   TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVAEMPPDIIVLDWMMPNVSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+K  SE + IP+I ++A + + D  R  + G + Y+ KP SL   M  ++  +  
Sbjct: 67  VCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125


>gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 235

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  +   GY  +   +G EAL L     PD++++D  L E+ G
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +QI+ +    + PVI VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  IEVLRQIRSND---DTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
            DSM 574]
 gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
            DSM 574]
          Length = 1274

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 76/116 (65%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN+ N +L + L+  +GY      NG +ALE+  Q   D+++MD+Q+  + G E 
Sbjct: 1055 VLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQSNFDIVLMDMQMPVMDGYET 1114

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+ D   + +P+IA+TA AMKGD E+    GC+ Y++KP+   I ++TIKKYI
Sbjct: 1115 TRVIRSDERYKSLPIIALTAHAMKGDNEKCLAAGCDDYLAKPVKRDILIKTIKKYI 1170



 Score =  114 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ ED     +L  + +E +GY  + T  G +AL LA+ ++PDV+++DI L ++SG E+
Sbjct: 796 VLVAEDEWTTKQLIANYLEKAGYTVVATDQGKQALTLAKIYQPDVLVLDILLPDLSGWEV 855

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             +IK+D E Q+IPV+  +      ++ER    G   +I K +S  + +  ++K 
Sbjct: 856 LAKIKKDQETQDIPVVVCSVL---PEKERAFSLGAVDFIEKTVSEKVLVNRLQKL 907



 Score = 73.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62
             +++++D+++ ++    ++  +GY         EAL  +    +   II+D+ +  + G 
Sbjct: 917  HIVLIDDDKMALEFLNCIVGGAGYQTHSFMLAEEALNYIINGGQVHAIILDLLMPGMDGF 976

Query: 63   EITKQIKEDSELQEIPVIAVTAFA 86
            E    ++ D+  + IPV+  T   
Sbjct: 977  EFLDNLRADANYKSIPVLIYTGKD 1000


>gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 234

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EA+EL    KPD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
          Length = 236

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +  + L +  +ET+GYI     +G EALE   + +P+++++D+ L +  
Sbjct: 1   MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVNEIQPELVVLDVMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+ D  L  +P++ +TA   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 71/119 (59%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+E   +L +  +E + +    T +G EALE  + +  D+II+D+ L   SGL+I
Sbjct: 3   VLLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSYDLIILDLMLPGASGLDI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K+I+E+S  +++PVI +TA + +  + +    G + Y++KP S+   +  I+  +  A
Sbjct: 63  CKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRRA 121


>gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 230

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V++V+D+     +    +  +GY      +G  AL       PD++++D+ L  + 
Sbjct: 1   MTQRVLVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++       +P+I +TA   + D     + G + Y+SKP S    +  +   +
Sbjct: 61  GLEVCRRLRTKPGG--VPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|220906227|ref|YP_002481538.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219862838|gb|ACL43177.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 566

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 63/118 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N+++  D +  +G+  L   +G  AL+ A    PD+I++DI +  + G E
Sbjct: 10  TILVVDDTPTNLEVLFDFLSNAGFKVLFAEDGESALQKANYITPDLILLDILMPGMDGFE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +++K++   + IPVI +TA     D+ +    G   +I+KP+     +  ++ ++ 
Sbjct: 70  TCQRLKQNGSTRSIPVIFLTALTDTVDKVKGFALGAVDFITKPLQYEEVLARVETHLR 127


>gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 241

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D+     L    +E +GY   Q  +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ +TA     D+ +    G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae FF5]
 gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae 642]
 gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae Cit 7]
 gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  ++  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  ++  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|220935638|ref|YP_002514537.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996948|gb|ACL73550.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 61/120 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IVED     ++    +  +G+   +  +G EA E      PD+I++D  L   SG+
Sbjct: 8   KTVLIVEDEPAIREMVSFALARAGFEVDEAVDGGEAQERIASRLPDMILLDWMLPGTSGI 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +++K D   +++P+I +TA   + D     + G + Y++KP S    +  IK  +  
Sbjct: 68  DLARRLKRDEYTRDVPIIMLTARGEEDDRVGGLEAGVDDYVTKPFSPRELVARIKAVMRR 127


>gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
 gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
          Length = 244

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E   +L R  +E   Y+  +  NG EAL LA ++  D+I++D+ L    G+E
Sbjct: 12  KILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLMLPGKDGIE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + KQ++E    +  PVI +TA   + +  +  + G + YI KP S    +  +K  +  
Sbjct: 72  VCKQLREK---KATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 127


>gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 234

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  ++  GY       G +A    ++  PD++++D  L  +S
Sbjct: 1   MSARILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 252

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EA+EL    +PD+II+D+ L EI G
Sbjct: 18  MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 77

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 78  LEVAKSIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 134

Query: 122 E 122
            
Sbjct: 135 R 135


>gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 232

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 72/121 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D +  ++L +  +   GY   +  +G++ALE+ + +K D++I+DI + +  G
Sbjct: 1   MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNNKVDLVILDIMMSDKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ + + + +PVI ++A + + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 61  YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7]
 gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1]
 gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
 gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas aeruginosa PA7]
 gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123


>gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator
           [uncultured prokaryote AT5]
          Length = 234

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+K  ++IVED E  + L R  +E  GY       G EA  L ++  PD++I+D  L  +
Sbjct: 1   MMKANILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWMLPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ ++++  +E + +P+I +TA   + +  R    G + YI KP S+      ++  
Sbjct: 61  SGIELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRAL 120

Query: 120 IGEA 123
           +  A
Sbjct: 121 LRRA 124


>gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++VED     ++   ++E  GY  ++  +  EA+ L ++  P++I++D  +   S
Sbjct: 1   MSMRVLVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALVKEPYPELILLDWMIPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K++   + IP++ +TA   + D+ R  + G + YI+KP S       IK  +
Sbjct: 61  GIQFIKLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVM 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 276

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+    ++    +  +G    +  +G  AL  A  H+PD++++D+ L  + GLE
Sbjct: 18  HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E      +PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 78  VCRRMRERHP---VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133


>gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2]
 gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L +  +E SGY  +   +G   L  A + KPD+I++D+ L ++ 
Sbjct: 1   MSKKILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K++++   +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIEVCKELRQKKLMY--PILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33]
 gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407]
 gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3]
 gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407]
 gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7]
 gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein,
           C-terminal [Streptococcus suis GZ1]
 gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14]
 gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3]
          Length = 234

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EALE+     PD++I+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P++ ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium HTCC2083]
 gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 227

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 70/118 (59%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     ++    +E  GY  LQ  +G E L LAR++ PD+I++D  L E+SG+E+
Sbjct: 6   ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPEMSGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q+K D+  + IP+I ++A +   D+ R  + G + Y++KP S+   M  +K  +  
Sbjct: 66  CRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRR 123


>gi|294495497|ref|YP_003541990.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
 gi|292666496|gb|ADE36345.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
          Length = 170

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++I++D    +   +  +++ GY  ++  NG   LE   +  PD+I++D+ + ++ G 
Sbjct: 48  QTILIIDDEPDAIIAAKRALQSEGYNVIEAYNGKTGLEAIEEKTPDLILLDVMMPDMDGF 107

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI KQ+K+D     IP+I +TA     D     + G + YI+KP +L      I+  +  
Sbjct: 108 EICKQLKKDELYNHIPIIMLTAKGEVDDRIEGIETGADDYITKPFNLRELKARIRMVLRR 167

Query: 123 A 123
           A
Sbjct: 168 A 168


>gi|325273090|ref|ZP_08139394.1| histidine kinase [Pseudomonas sp. TJI-51]
 gi|324101779|gb|EGB99321.1| histidine kinase [Pseudomonas sp. TJI-51]
          Length = 305

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  + + ++   G        G EAL    +   D+++MD  +  + G 
Sbjct: 184 ARILLVEDNPVNQLVAKGMLAKLGCQVELATQGAEALAALERQPFDLVLMDCNMPVMDGY 243

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E +++I++      +P++A+TA AM  + ER R  G   Y++KP      +  +  ++
Sbjct: 244 EASRRIRQSGRWPHLPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHWV 301


>gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
 gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
          Length = 233

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV+IVED+    +L    +E  G+     ++G + +E  R  +P ++++DI L  + 
Sbjct: 1   MAQKVLIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSFQPALVLLDIMLPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+E+S     PVI +TA     D+    + G + YI KP  +   +  I   +
Sbjct: 61  GWTVLKKIREESAT---PVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1245

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/120 (35%), Positives = 76/120 (63%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VEDN++N ++  +L+ ++G       NG  A+ELA QH+ D ++MDIQ+  + G E
Sbjct: 987  RVLLVEDNDMNQQVACELLTSAGIEVTVADNGHTAVELAAQHRFDTVLMDIQMPVMDGYE 1046

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++ I+ D   +++P+IA+TA AM  D +R  + G   Y+SKPI+      T++++ G A
Sbjct: 1047 ASRLIRADQACRDLPIIAMTAHAMPQDRQRCLESGMNDYVSKPINPQELYSTLERW-GRA 1105



 Score = 57.8 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 57/116 (49%), Gaps = 3/116 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISG 61
           K+++++D+  +  +F  L  + G  A    +  E L      +   D++++D  L  + G
Sbjct: 838 KLLVLDDSARSRDIFEGLFYSLGCRAELAASAQEGLGCLERSEKPYDLLLLDDSLSGLDG 897

Query: 62  LEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             + +Q++  S L   P +I +T +  +   +++ + G +  +++P++L    + +
Sbjct: 898 FAVARQVRRMSPLHHQPKIIMITGYGDEEAHKQVVEEGLDGCLTRPVTLRSLFDAV 953


>gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation
           [Oceanobacillus iheyensis HTE831]
          Length = 231

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D +  + L +  +E SG+      NG EA+  A     D+I++D+ L E+ 
Sbjct: 1   MSKRILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLMLPEVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + ++ +      P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCRTLRMNQV--NTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 232

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED +    + +  +E  GY  L   +G E LE+     PD++++DI + ++ G
Sbjct: 1   MPKVVVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + K +++    + +P+I +TA A + D+    + G + YI+KP  +   +  +K  + 
Sbjct: 61  LSVCKLVRK---TKNMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|114794859|pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
 gi|114794860|pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
 gi|114794861|pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
          Length = 124

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED     +  R  +E  GY  +   +G++ L+ AR+ +PD++++DI L  + G
Sbjct: 1   MATVLIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRDQPDLVVLDIMLPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++++S   ++P+I +TA   + D     + G + YISKP SL  F+  ++  + 
Sbjct: 61  FSVCRILRQES---DVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 226

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D+    +L    +   G    +  NG EAL++    K D++IMDI + E+ G
Sbjct: 3   MARILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++   +  ++P++ +TA     ++ +    G + Y+ KP      +  +K  + 
Sbjct: 63  WELCRELR---DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLK 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 227

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   +++  G+  +   +G +AL   ++H PD++++D+ L  + 
Sbjct: 1   MSSRILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I+    + ++P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GFDVCRAIR---HVSDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D E   +L R  +E   Y   +  NG EALELA   + D+I++D+ +  + G+E
Sbjct: 6   TLLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVMMPGMDGVE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++++    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  MCQELRKK---KATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRRA 122


>gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 229

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K+  ++IV+D     +L    +   G+       G EA++   Q   D++++D+ + E
Sbjct: 1   MNKRHNILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVMMDE 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G    K+I+      +IP+I +TA   + D+    + G + YI KP S    +  I+ 
Sbjct: 61  MDGFTACKEIRA---FSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEV 117

Query: 119 YIGE 122
            +  
Sbjct: 118 ALRR 121


>gi|310766801|gb|ADP11751.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia sp. Ejp617]
          Length = 229

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K++++VED     ++   ++E + Y  ++  +   A+ L  +  PD+I++D  L   S
Sbjct: 1   MVKRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
          Length = 242

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    Y      +G +AL      +PD+I++D+ L  + G 
Sbjct: 15  QKILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLMLPGMDGY 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+      ++P+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 75  QVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRR 131


>gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  +  +   GY      +G +ALE A  ++PD++++DIQ+  + GL
Sbjct: 11  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDIQMPRMDGL 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+        P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 71  TAARRIR--GAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 234

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED E   +L  + +   G+      +G E   + +Q +PD++I+D  L  + G
Sbjct: 1   MSHILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQEQPDLVILDWMLPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+E      +PV+ +TA   + ++    + G + Y++KP S       ++  + 
Sbjct: 61  VEVCRKIRE---TSIVPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 234

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    +    ++  GY  +   +G EALE   +  PD++++D+ L + +G
Sbjct: 1   MHKILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKENPDLVLLDLMLPKKTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I++DS    +P+I +TA   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVCREIRKDSA---VPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 227

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED      + R  +E  G+  +   +G +ALE      PD++I+DI L +  G  +
Sbjct: 6   ILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIMLPKKDGWSV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+  +    +P+I ++A   + D     + G + Y++KP S    +  +K  +  +
Sbjct: 66  CREIRRQTA---VPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRS 121


>gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205]
          Length = 249

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALE  R   PD++++D+ + ++ G  
Sbjct: 11  TILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAFRNTNPDLVVLDVMMPKLDGYG 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 126


>gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 229

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++ V+D+   +K+ +  +   G+  +   +G EAL+ ARQ  PD++I+D+ +  + 
Sbjct: 1   MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  +++K     +E+P+I ++A   + D     + G + Y +KP S +     +K  +
Sbjct: 61  GFETYQKLKAQ---REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 241

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +   +L R  +E  GY+  +  +G  AL+   +   D+I++D+ L  + G++
Sbjct: 9   RILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLMLPGMDGVD 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     +  PVI +TA   + +     + G + Y+ KP S    +  +K  +  +
Sbjct: 69  VCRELRNK---KATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRS 125


>gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++ +D    ++L RD  E  GY      NG+EAL+    H PD+I++D+ +  I 
Sbjct: 1   MSKKILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALDQ-SSHNPDLILLDVNMPGID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+   +    P++ +TA   + D  +    G + YI KP S+      ++ ++
Sbjct: 60  GFEVCRMIR---DHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator
           [Pseudomonas fluorescens SBW25]
 gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
 gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens SBW25]
 gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|332827076|gb|EGJ99861.1| hypothetical protein HMPREF9455_03734 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1355

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDNE  + L  +++    Y  L   NG+EAL+  + +  D++I D+ +  + GLE+
Sbjct: 1108 VLLVEDNEELLTLIGNILSKH-YHVLTASNGVEALDRVKDNDIDIVISDVMMPRMDGLEL 1166

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K+D E   IPVI +TA     D       G + YISKP  L +    I  ++
Sbjct: 1167 CRRLKKDIETSHIPVILLTAKNSADDRIECYNAGADGYISKPFELKVLEARINNFL 1222


>gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+I +D +    L +  +E   Y      NG EAL L   +K ++II+D+ + ++ G+E
Sbjct: 5   RVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLMMPKVDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    +P++ +TA   + D+      G + YI+KP S++  +  +K  +  
Sbjct: 65  VCRRLRNKT---NVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRR 120


>gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13]
          Length = 242

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D +  + L +  ++ +GY      +G E L  A + + D+I++D+ L +  
Sbjct: 1   MNKKILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K++++       P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKELRQHKI--HTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 228

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D +L +K  R  +E  G       +G EALE A+  + D++++D+ L ++ 
Sbjct: 1   MGKRILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +QI+E     ++PV+ +TA +   D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
 gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
          Length = 271

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D      L R+ ++ +G+   +  +G  AL +  Q   D++I+DI +  + G
Sbjct: 45  MAKILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIMMPFMDG 104

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   ++++    +   PVI +TA + + D+    +GG + Y+ KP S    +  +K  + 
Sbjct: 105 MTCLREMRTRKIM--TPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLA 162

Query: 122 E 122
            
Sbjct: 163 R 163


>gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 229

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D     +   D ++ SG+      N  E  +  +Q+ PD++I D+ + ++ 
Sbjct: 1   MSAQLLLVDDEPGLREAVSDYLQESGFSVQVASNAREGWDWMQQNTPDLVISDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  KQ++ED   Q +PVI +TA  M GD  +  + G +AY+ KP      +  ++  +
Sbjct: 61  GYQFLKQLREDPRFQTVPVIFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENLL 120

Query: 121 GE 122
             
Sbjct: 121 SR 122


>gi|117620062|ref|YP_854674.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561469|gb|ABK38417.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 244

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++IV+D++   +L  + +  +G+  L    G E  +L  QH PD+II+DI +    G
Sbjct: 8   SKQLLIVDDDQEIRELLNEYLTRAGFEVLTAAEGNEMRKLLAQHNPDLIILDIMMPGDDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +QI+ DS+   +P+I +TA + + D     + G + YI+KP S       IK  + 
Sbjct: 68  FTLCQQIRRDSQ---VPIIMLTAASDEADRVIGLELGADDYITKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
 gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
          Length = 229

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++++++VED     ++   ++E  GY A++  +   ALE   +  P++I+MD  L   S
Sbjct: 1   MVRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSALEKICEPYPELILMDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IP++ +TA   + D+ R  + G + YI+KP S    M  +K  +
Sbjct: 61  GINLIKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 230

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 60/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED      +    +  + Y  ++  N  +  +L  +H+PD +++D  L  +SG+ +
Sbjct: 6   ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDCVLLDWMLPGVSGISL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+++ +    P+I +TA   + D+ +  + G + Y+ KP S    +  +K  +  
Sbjct: 66  AQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRR 123


>gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
          Length = 234

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EALE+     PD++I+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P++ ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e]
 gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland
           1988]
 gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL
           R2-561]
 gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161]
 gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL
           J2-003]
 gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28]
 gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e]
 gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 237

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +    + +  +   G+      +G EALEL  + +PD+I++DI L    G+
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120


>gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 234

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D    + L +  +E   Y      +G EAL+  R    D II+D+ L  +SG
Sbjct: 1   MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++T++I+E+    + P++ +TA   + D+    + G + Y++KP S    +  IK    
Sbjct: 61  LDVTRKIREEKI--QTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIER 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 247

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L  + G
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I ++++ D    EIPV+ +TA +    +      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTICQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
 gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
          Length = 229

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   AL       PD++++D  +   S
Sbjct: 1   MARRILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLIDPYPDLVLLDWMIPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I KQ+K +S  ++IP+I +TA   + D+ +  + G + Y+ KP S    +  +K  +
Sbjct: 61  GLQIIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 234

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   N  EALE     +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P++ ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|328469451|gb|EGF40397.1| putative two-component response regulator [Vibrio parahaemolyticus
           10329]
          Length = 235

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN    +   D +  +G+  L   NG    +L   H PD+II+DI +    G 
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGAMWQLLNDHHPDLIILDIMMPGEDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++++S   +IP+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 64  TLCQKLRKNS---DIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++++D    + + R  +E  GY  L   +G   L++ RQ +PD++++D+ + ++S
Sbjct: 3   MAKKILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLMMPKLS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I+++SE    PVI +TA     D+    + G + Y++KP      +  IK  +
Sbjct: 63  GNDVCRIIRQESET---PVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 290

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+    ++    +  +G    +  +G  AL  A  H+PD++++D+ L  + GLE
Sbjct: 18  HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++       +PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 78  VCRRMRARHP---VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133


>gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L +  +E  G+    +R+G+ AL + ++  PD+II+D+ +  + GLE+
Sbjct: 3   ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQEQPPDLIILDLMIPGLDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 63  CARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRS 121


>gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 235

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D +    + +  +   GY  +   +G EAL++     PD++++D  L E+ G
Sbjct: 1   MSKVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +QI+  S   ++PVI VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  IEVLRQIRSKS---DVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117


>gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 237

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  +   GY  +   +G EAL +  + KPD++++D  L EI G
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +QI+  SE    PVI VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  VEVLRQIRSKSET---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117


>gi|238063933|ref|ZP_04608642.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237885744|gb|EEP74572.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 318

 Score =  167 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 60/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+    +     +   G+  +   +G EALE+  + +PD+ ++D+ +  I GLE+
Sbjct: 11  ILVVDDDADIARFVEFNLRLHGFEVIHASDGQEALEVIERQRPDLAVVDLMMPRIDGLEL 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++++ +     +PVI +TA  M  D+      G + Y+ KP   +  +  +   +  
Sbjct: 71  TRRLRANPMTSALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRR 128


>gi|298492569|ref|YP_003722746.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298234487|gb|ADI65623.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 383

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L   ++E  GY      +G  AL       PD+I++DI +  ++G E+
Sbjct: 13  ILIVDDTPNNLHLLSSMLEEQGYEVRCANSGAIALRAVEMEHPDIILLDINMPNMNGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IGE 122
            +++K D   ++IPVI ++A +   D+ +  + G   YI+KP  L   +  ++ +  +  
Sbjct: 73  CERLKLDPRTRDIPVIFLSALSETIDKVKAFRIGGIDYITKPFQLEEVLARLENHISLRR 132


>gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1111

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
           K+++V+D  +N+++  + +    Y   Q  NG+EAL L  +  KPD+I++D+ +  ++G 
Sbjct: 717 KILVVDDEPVNIQVIANNLSLQNYAITQATNGLEALTLIEKGFKPDLILLDVMMPRMTGY 776

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ ++++E     E+P++ +TA     D       G   Y+SKP S    +  IK ++ 
Sbjct: 777 EVCQKLREKYLHSELPILMLTAKNQVTDLVDGLSSGANDYLSKPFSKQELLARIKTHLR 835


>gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
 gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D ++ +K  +  +E+ GY      +G EA+ELAR    D+II+D+ + +I GL+
Sbjct: 13  KILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGGFDLIILDLMMPKIDGLQ 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              +I+E      +P+I +TA +   D+    + G + YI+KP ++      ++  +  A
Sbjct: 73  ACMRIRE---FSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRA 129


>gi|145594416|ref|YP_001158713.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303753|gb|ABP54335.1| response regulator receiver modulated diguanylate cyclase
           [Salinispora tropica CNB-440]
          Length = 326

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+E   +     +   GY  +   +G EALE+  +H+PD+ ++D+ +  + GLE+
Sbjct: 11  ILVVDDDEDIARFVEFNLRLHGYEVIHAGDGQEALEVIARHRPDLAVVDLMMPRVDGLEL 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++++ D     +PVI +TA  M  D+      G + Y+ KP   +  +  +   +  
Sbjct: 71  TRRLRADPMTAVLPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRR 128


>gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D +    + +  +   GY  +   +G EAL++     PD++++D  L E+ G
Sbjct: 1   MSKVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +QI+  S   ++PVI VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  IEVLRQIRSKS---DVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117


>gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp.
           HTCC2999]
          Length = 228

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++VED     ++ + ++E +G+   +  +   AL+   +  PD++++D  L   S
Sbjct: 1   MSRSILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMVEPYPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++ KE    +EIPVI +TA   + D+ R    G + YI+KP S    +  IK  +
Sbjct: 61  GVQLARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D     ++    +   G+  L+  +G  AL LARQ  PD++++D+ L +++G
Sbjct: 1   MANILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLMLPKVTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ D   +  PVI +TA + + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LEVCRRLQSD---RRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|90577311|ref|ZP_01233122.1| putative DNA-binding response regulator [Vibrio angustum S14]
 gi|90440397|gb|EAS65577.1| putative DNA-binding response regulator [Vibrio angustum S14]
          Length = 243

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K++++V+D++   +L  + +  +G+       G E         PD+I++DI +    G
Sbjct: 4   SKQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIMMPGDDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++     ++P+I +TA + + D+    + G + YI+KP S    +  IK  + 
Sbjct: 64  FTLCQHIRK---TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 406

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  AL LAR  +PD +++DI L ++ GLE
Sbjct: 160 RVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPDMDGLE 219

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ +S   ++PV+ +TA     D       G + Y++KP SL   +  ++  +  A
Sbjct: 220 VLRRLRAES--PDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRA 277


>gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D     ++ +   E  G+      +G EA+  AR    D++I+DI L ++ 
Sbjct: 1   MADRILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+       +P++ +TA   + D+    + G + Y++KP S    +  ++  +
Sbjct: 61  GFTVCREIR---RFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 275

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGL 62
           +V++V+D+    ++    +  +GY   +  +G  ALE     +PD++++D+ L   + G 
Sbjct: 44  RVLVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAALRPDLVVLDLMLPGGMDGF 103

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+       +PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 104 EVCRRIRARGP---VPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRR 160


>gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +  + L    +E +G+  +   +G EA+E     +P+ II+D+ L ++ 
Sbjct: 1   MSKKVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCKQLRQQKVM--TPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
 gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G +AL+     +PD+I++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+      ++P+I ++A     D+    + G + YI KP      +  ++  +  
Sbjct: 65  QVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRR 121


>gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
 gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
          Length = 260

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 32  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVMRLSEPFPDLVLLDWMLPGGS 91

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 92  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 151

Query: 121 GE 122
             
Sbjct: 152 RR 153


>gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1014

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 68/116 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D + N+ +  +L+E  GY      +G EAL+   Q +PD+I++D+ +  + GLE+
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K+D + ++IPVI +TA   K D  +    G   Y++KP S    +  +K ++
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135



 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ EDN +N ++ + L++  GY      NG EAL    +   DV++MD+++ E+ GL 
Sbjct: 741 TILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLT 800

Query: 64  ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            T+ I+      E P +IAVTA++M+GD ER    G   Y+SKPI L    + ++
Sbjct: 801 ATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQ 855


>gi|89072346|ref|ZP_01158925.1| putative DNA-binding response regulator [Photobacterium sp. SKA34]
 gi|89051878|gb|EAR57330.1| putative DNA-binding response regulator [Photobacterium sp. SKA34]
          Length = 243

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K++++V+D++   +L  + +  +G+       G E         PD+I++DI +    G
Sbjct: 4   SKQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIMMPGDDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++     ++P+I +TA + + D+    + G + YI+KP S    +  IK  + 
Sbjct: 64  FTLCQHIRK---TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 236

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L +  +E  G+    +R+G+ AL + ++  PD+II+D+ +  + GLE+
Sbjct: 3   ILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQEQPPDLIILDLMIPGLDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 63  CARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRALLRRS 121


>gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 242

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 56/119 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E  E A++  PDVII D+ +    G  
Sbjct: 16  RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQKMIPDVIISDVMMPRCDGYG 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+ED  L   PVI +TA  M  D  +  + G + Y+ KP      +  +K  +  
Sbjct: 76  LLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134


>gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. NATL2A]
 gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. NATL2A]
          Length = 242

 Score =  167 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 56/119 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E  E A++  PDVII D+ +    G  
Sbjct: 16  RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQKMIPDVIISDVMMPRCDGYG 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+ED  L   PVI +TA  M  D  +  + G + Y+ KP      +  +K  +  
Sbjct: 76  LLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134


>gi|188534673|ref|YP_001908470.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
 gi|188029715|emb|CAO97594.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
          Length = 229

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E + Y  ++  +   A+ L  +  PD+I++D  L   S
Sbjct: 1   MAKRILVVEDEAPIREMLCFVLEQNDYHPIEAADYDSAVSLLIEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580]
 gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
 gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580]
 gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L +  +E   Y   +  NG EA++ A  +  D+I++D+ +    G+E
Sbjct: 8   KILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDYDLILLDLMMPGTDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++   + +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 68  VCRQVR---DKKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRS 124


>gi|332881804|ref|ZP_08449452.1| response regulator receiver domain protein [Capnocytophaga sp. oral
            taxon 329 str. F0087]
 gi|332680443|gb|EGJ53392.1| response regulator receiver domain protein [Capnocytophaga sp. oral
            taxon 329 str. F0087]
          Length = 1341

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN   +++   ++ T  Y  L   NG+EAL+  + H  D+I+ D+ +  + G  +
Sbjct: 1094 ILLVDDNMQLLEMMEKILATK-YRVLTAENGLEALKQLKAHAVDLIVSDVMMPGMDGFAL 1152

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +++K   E   IPVI +TA     D     + G + Y++KP  L +    I   + 
Sbjct: 1153 CRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLLR 1209


>gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 246

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++++IV+D     +  +  +   GY      +G +ALE A  ++PD++++DIQ+  + G
Sbjct: 12  TQRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDG 71

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L   ++I+   +    P++ +TA    GD       G + Y+ KP  L      I+  + 
Sbjct: 72  LTAARRIRGTGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLR 129

Query: 122 EA 123
            +
Sbjct: 130 RS 131


>gi|317121455|ref|YP_004101458.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315591435|gb|ADU50731.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 326

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D    +K  R  +E +G+      +G +ALE       D+II+D+ L EI 
Sbjct: 1   MGERILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGGIDLIILDLMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +++++     ++P+I +TA     D     + G + Y+ KP +    +  I+  +
Sbjct: 61  GLTVCREVRK---TSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 229

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
 gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
          Length = 1127

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 60/115 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    ++  GY      +G E L+   +  P+++++D+ +  +SG E+ 
Sbjct: 723 LVADDEPVNLQVLSSFLKLEGYRVKTANDGPETLKQLEEETPELVLLDVMMPGMSGYEVC 782

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++     ++P+I +TA     D  R  + G   Y+SKP +       IK ++
Sbjct: 783 QEVRKQYSHSQLPIIMLTALNQTQDRVRGFESGANDYLSKPFNKQELAARIKAHL 837


>gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 236

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +   E  GY  +   +G EAL + +  +PD+I++D+ L    G
Sbjct: 1   MAKLLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVMLPGRDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ + +++     ++P+I +TA   + D+    + G + Y++KP S    +  +K ++ 
Sbjct: 61  MDVCRTVRQ---TYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 217

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED E   K+ R  +  +GYI  +  +G E L+L  +  PD++++D+ + +  G E
Sbjct: 2   KILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFYEWNPDLVLLDVMMPKKDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + IK +   +  PV+ +TA   + DE R  + G + YI KP SL I    +K  +G+
Sbjct: 62  VCRAIKSE---KTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRLKNLLGD 117


>gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
 gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +L +K  R  +E          +G EAL+ AR+   D+I++D+ L  + 
Sbjct: 1   MAKKVLVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVMLPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + ++E      +P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCRAVRE---FSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 237

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D+          +E  GY   Q  +G EALE   ++ PD+++ D+ + E+ G
Sbjct: 1   MKKILVVDDDRTLRITLTRALENMGYQVQQVSSGAEALEACVKNPPDLVVSDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  ++++     Q +P I ++      D       G + Y+ KP++       I+  + 
Sbjct: 61  IEFCRRLRATPSGQLMPFIFLSGKGELEDRIHGHSIGADDYLIKPVNPRELAAKIEAQLE 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 226

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 66/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+IVED     +L    +E  GY AL T  G+E LE AR+  PD+I++D+ L  + G
Sbjct: 1   MKKVLIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRELPDLILLDLMLPGMMG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++   + + IPV+ +TA   + D     + G + YI KP S+   M  I+  + 
Sbjct: 61  TEVCSALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D E   +L R  +E  GY   ++++G  AL+LA     D+I++DI L  + G E+
Sbjct: 7   ILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDYDLILLDIMLPGMDGTEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++    +  PVI +TA   + +     + G + Y+ KP S    +  +K  +  +
Sbjct: 67  CARLRQ---FKTTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRRS 122


>gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 231

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D +  + + +  +E  GYI  +  +G EA+++A++  PD+II+D+ L ++ 
Sbjct: 1   MSSKILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K +++      +P++ +TA   + D+    + G + YI+KP S+   +  +K  +
Sbjct: 61  GFTVLKTLRQS---MTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea
           ananatis AJ13355]
          Length = 245

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E + Y  ++  +   A+    +  PD+I++D  L   S
Sbjct: 17  MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVSKLIEPWPDLILLDWMLPGGS 76

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    M  IK  +
Sbjct: 77  GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 136

Query: 121 GE 122
             
Sbjct: 137 RR 138


>gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 229

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E    L RD +E SG+      +G   LE A   + D++I+D+ L  + G
Sbjct: 1   MSRILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI +++++    +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICREVRQK---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 233

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G EAL+      PD+I++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+      ++P+I ++A     D+    + G + YI KP      +  ++  +  
Sbjct: 65  QVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRR 121


>gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 233

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G EAL      +PD+II+D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+      ++P+I ++A     D+    + G + Y+ KP      +  ++  +  
Sbjct: 65  QVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRR 121


>gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D +  + + +  +E  GYI  +  +G EA+++A++  PD+II+D+ L ++ 
Sbjct: 1   MSSKILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K +++      +P++ +TA   + D+    + G + YI+KP S+   +  +K  +
Sbjct: 61  GFTVLKTLRQS---MTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB
           [Saccharophagus degradans 2-40]
          Length = 234

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D      + R  +E + Y  L+  +  +A  L    KPD+I++D  L   SG+
Sbjct: 4   KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    EIP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123


>gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103]
 gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103]
          Length = 245

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E + Y  ++  +   A+    +  PD+I++D  L   S
Sbjct: 17  MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAISKLIEPWPDLILLDWMLPGGS 76

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    M  IK  +
Sbjct: 77  GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 136

Query: 121 GE 122
             
Sbjct: 137 RR 138


>gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E   ++ +  +E SGY      +G EA E+  ++KPD++++DI L  + G++
Sbjct: 7   KILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIMLPHVDGID 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I+++ E    PVI +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 67  VLKWIRKEYET---PVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRR 122


>gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 70/121 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D E  ++L +  +E +G+  L + NG E++EL + +  D+I++D+ L  I G+
Sbjct: 4   KNILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELVKNNDVDLIVLDLMLPGIDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+   +  + P+I +TA   + D     + G + Y++KP S+   +  IK  +  
Sbjct: 64  EVCKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +  +++ +  +E  GYI  +  +G EAL++A++  PD+II+D+ L ++ 
Sbjct: 1   MTHRILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + +++      IP++ +TA   + D+    + G + YI+KP S+   +  +K  +
Sbjct: 61  GFSVLRTLRQS---MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20]
 gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 235

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  +   GY  +   +G EAL L    KPD++++D  L EI G
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +QI+  SE    PVI VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  VEVLRQIRSKSET---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117


>gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 229

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis
           Antiqua]
 gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis FV-1]
 gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92]
 gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates Pi uptake (OmpR family) [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pseudotuberculosis IP 31758]
 gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 229

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +L +K  +  +E  G+      +G EAL   + +K DV+++D+ L +  
Sbjct: 1   MNSKILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVMLPKYD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + ++E      IP+I +TA     D+    + G + Y++KP ++      IK  +
Sbjct: 61  GLQVCQLVRE---FSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D E  + L +  +E  G+      +G  AL+ A     D I++D+ L E+ 
Sbjct: 1   MAQHILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ KQ++++  +   P++ +TA   + D+    + G + Y++KP S    +  ++  +
Sbjct: 61  GLEVCKQLRQNKIM--TPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  +  +   GY      +G +AL+ A  ++PD++++DIQ+  + GL
Sbjct: 11  QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDIQMPRMDGL 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+   +    P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 71  TAARRIRATGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|153868898|ref|ZP_01998627.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074527|gb|EDN71372.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 378

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   +++V+D   N+++   ++   GY     RNG +AL +AR   PD+I++DI + E+
Sbjct: 1   MKPETILVVDDLADNLRVLIGILSQQGYKVRPARNGQQALLMARTSPPDLILLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ +Q+K D +   IP+I ++A     D+ +    G   YI+KP      +  ++ +
Sbjct: 61  DGYEVCQQLKADQKTHHIPIIFISALNEVLDKIKAFSLGAVDYITKPFQAEEVLARVETH 120

Query: 120 I 120
           +
Sbjct: 121 L 121


>gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6]
 gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6]
          Length = 234

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D     +L R  +   GY  +   +G EALE A   +P+VI++D+ L  + 
Sbjct: 1   MSERILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGLPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+      ++P+I ++A   + D+      G + Y+ KP  +   +  I+  +
Sbjct: 61  GLEVCRRIR---GWSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVAL 117

Query: 121 GEA 123
             +
Sbjct: 118 RHS 120


>gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L +  +E  G+    +R+G+ AL++  +  PD+II+D+ +  + GLE+
Sbjct: 3   ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIPGLDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 63  CARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRS 121


>gi|297517635|ref|ZP_06936021.1| transcriptional regulator PhoB [Escherichia coli OP50]
 gi|6573458|pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
 gi|6573459|pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
          Length = 127

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|145600097|ref|YP_001164173.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
 gi|145211793|gb|ABP41200.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
          Length = 229

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
 gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
          Length = 229

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++++++VED     ++   ++E  GY  ++  +  +ALE   +  P++I+MD  L   S
Sbjct: 1   MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IPV+ +TA   + D+ R  + G + YI+KP S    M  +K  +
Sbjct: 61  GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 217

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++VED     +L +D +   GY   +  +GM+ALE+ ++   D++I+DI L ++ G
Sbjct: 1   MKKILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGYDLVILDIMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+ +S    +PVI +TA + + D+    +   + YI+KP +  + +  IK    
Sbjct: 61  WSVCREIRRESM---VPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIFR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 232

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +IV+D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 239

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    +   R  +E  G   +   NG EALE  R   PDV+++DI +  + G E 
Sbjct: 9   ILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++      +PV+ +TA   + D  +  + G + YI KP S    +  I+  +  
Sbjct: 69  LRRLRQ---ASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRR 123


>gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911]
 gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911]
          Length = 237

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +  + L    ++ +GY  +   +G    + A Q +PD+I++D+ L +++
Sbjct: 1   MDKKVLVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLMLPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ++++      P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKQLRQEKI--HTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1347

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 45/122 (36%), Positives = 73/122 (59%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++++ EDNE+N     D +   GY       G EAL++A + +PD+IIMDIQ+  + G
Sbjct: 1222 SRRILLAEDNEVNRVTLSDYLVAQGYEVRVACQGKEALQIAAEWRPDLIIMDIQMPGLDG 1281

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            LE+ ++++ D+     P+IAVTA AM GD ER    G   Y +KPI L   +E I++++ 
Sbjct: 1282 LEVIQRLRADAAFAATPIIAVTALAMPGDRERCLSAGANDYFAKPIRLRQLVERIEQFLA 1341

Query: 122  EA 123
             +
Sbjct: 1342 SS 1343



 Score = 95.2 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+          +E      +    G  A+E  +  +PD+I++D+Q+ + SG EI 
Sbjct: 1096 LIIEDSATTADQLARYLEELQIQPVICSYGKGAVEQVQALRPDLILLDVQMPDRSGWEIL 1155

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
              ++ D +L+++PVI V+         R    G  AY+ KPI+  +    + + 
Sbjct: 1156 ADLRRDPDLRQVPVIIVSVVDEPE---RGLAAGAAAYLVKPINRLMLRRALSQI 1206


>gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 229

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  ++  +   A+    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSLSEPYPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  +EIPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 237

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 70/118 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    ++L +  ++++GY  +   +G EAL  AR   P++II+D+ + E+ GLE
Sbjct: 14  KILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKARSLLPNLIILDLMIPEVDGLE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + K ++ D+ +  IP+I +TA A + D     + G + Y++KP S    +  +K+ + 
Sbjct: 74  VCKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLR 131


>gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+++V+D  L +K  R  +E  GY  L   +G EAL+   +   D+II+D+ L +I 
Sbjct: 1   MVYKLLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGSFDLIILDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I++     + P+I +TA      +    + G + Y++KP ++      IK  +
Sbjct: 61  GLEVCQTIRQ---TSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 226

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++I +D  L  +L  D +   GY  L+  +G +AL++  + KPD++++D+ +    G
Sbjct: 1   MERILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQKPDLVLLDVMMPGYDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+       +P+I +TA   + D+      G + YI+KP S  + +  +K  + 
Sbjct: 61  WTVCREIR---RTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 229

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + +V++V+D +   ++    +   GY   +  +G EAL   +    D+I++D+ + ++
Sbjct: 1   MSRLRVLVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESWDLIVLDVMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+ + ++I++   + ++P+I +TA   + D     + G + Y+ KP S    +  IK  
Sbjct: 61  DGITVCQEIRK---VSKVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri VA-6]
          Length = 229

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLLGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|190570797|ref|YP_001975155.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019676|ref|ZP_03335481.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357069|emb|CAQ54466.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212994717|gb|EEB55360.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 458

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D   N+KL    ++   Y  +   +G EA++L  + +PD+I++D+ + ++S
Sbjct: 1   MTAKILVVDDIPSNVKLLEAQLKAEYYTVIVAYDGEEAIDLVAEQQPDIILLDVMMPKMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K++K D     IP+I VTA     D       G + +++KPI  +     IK  +
Sbjct: 61  GFEVCKKLKNDPLTTYIPIIMVTALHDTHDRVEGINAGADDFLTKPIDETALSARIKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 51/113 (45%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+++    +   ++++          +  EAL++  +   D+II D+Q  +  GL +
Sbjct: 159 ILVVDEDTFQAEQIHNVLKQRFRSIKILHDPKEALKVGIKDNYDLIISDMQFSKTDGLRL 218

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             + +   E +  P++ ++    K +  +    G   Y++ P+  S  +  + 
Sbjct: 219 CSKFRSKVETRYTPILILSEDYDKSNLVKALDVGANDYLTVPLDESELIARVN 271


>gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 229

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++++++VED     ++   ++E  GY  ++  +   ALE   +  P++I+MD  L   S
Sbjct: 1   MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDSALEKICEPYPELILMDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IPV+ +TA   + D+ R  + G + YI+KP S    M  +K  +
Sbjct: 61  GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 236

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     K+ +  +E   +  L   +G+ AL+L +  +PD+II+D+ L ++ GLE
Sbjct: 2   KILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQEPDLIILDLMLPKLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +I++ +  ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 62  VCTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALLRRS 121


>gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 232

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 73/123 (59%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + K++IV+D E  ++L    ++ SGY      +G+EA+ +A++ KP++I++D+ +  +
Sbjct: 1   MTREKILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIAKEEKPNLILLDLMIPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+IK+D E++   +I +TA   + D+    + G + YI+KP S+   +  +K  
Sbjct: 61  DGFDVCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440]
          Length = 242

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 17  RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 76

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 77  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 136


>gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           N1-067]
 gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           S4-171]
          Length = 238

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  +E   Y   +  +G EAL++A  +  +VI++D+ +    G+E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|269104854|ref|ZP_06157550.1| putative DNA-binding response regulator [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161494|gb|EEZ39991.1| putative DNA-binding response regulator [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 241

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++V+D++   +L  + +  SG+  +    G E        +PD+I++D+ +    G 
Sbjct: 5   KKVLVVDDDQEIRELLDEYLTKSGFHVVTAAEGEEMKRKLAAGEPDLILLDVMMPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++     ++P+I +TA + + D+    + G + YI+KP S    M  IK  +  
Sbjct: 65  TLCQHIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121


>gi|113476774|ref|YP_722835.1| response regulator receiver protein [Trichodesmium erythraeum
           IMS101]
 gi|110167822|gb|ABG52362.1| response regulator receiver protein [Trichodesmium erythraeum
           IMS101]
          Length = 121

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 70/121 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED+    ++   L++ SG       +G+EAL   +  KPD++++DI + +++G
Sbjct: 1   MSKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRLKNTKPDIVVLDIVMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++IK D + + IPV+  ++   + D     K G +AYI+KP   +  + T+K+ + 
Sbjct: 61  YEVCRRIKSDPQTKHIPVVMCSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
 gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
          Length = 230

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+   +++    +E +G+  L   +G+ A+   +Q  PD+I++DI L E+ 
Sbjct: 1   MPARILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAINAQQQEDPDLIVLDIGLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++ SE   +P++ +TA   + D     + G + Y++KP S    +  IK  +
Sbjct: 61  GLEVCREIRKISE---VPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
 gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
          Length = 1128

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G+E L++    KPD++++DI +  +SG E+ 
Sbjct: 725 LVADDEPVNLRILESFLRLEGYQVKLAKDGLETLDIIEHEKPDLLLLDIMMPGMSGFEVC 784

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI----- 120
           + I+E  +   +P+I +TA     D  R  + G   Y++KP S       I  ++     
Sbjct: 785 ETIREQYDHAALPIIMLTALNQSEDRVRGFELGANDYLAKPFSKPELAARIAAHLQASKA 844

Query: 121 --GEA 123
               A
Sbjct: 845 EERRA 849


>gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 244

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  +  +   GY      +G +ALE A  ++PD++++DIQ+  + GL
Sbjct: 11  QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGL 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+   +    P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 71  TAARRIRATGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 229

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 243

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    +   R  +E  G   +   NG EALE  R   PDV+++DI +  + G E 
Sbjct: 9   ILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++      +PV+ +TA   + D  +  + G + YI KP S    +  I+  +  
Sbjct: 69  LRRLRQ---ASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRR 123


>gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 230

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+    +L    +   GY      +G++AL + R  KP ++I+D+ +  I G E
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+ +S    +P++ +TA + + D+    + G + Y+SKP  +   +  +K  +  +
Sbjct: 65  LCRLIRAES---SVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRS 121


>gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 234

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L R+ +E   +     ++G +ALE+  Q +PD+II+D+ L  + GLE+
Sbjct: 3   ILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIFGQLQPDLIILDLMLPGLDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 63  CTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRRS 121


>gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555]
 gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016]
 gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM
           555]
 gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E   ++ +  +E++GY      +G  A     ++KPD++I+DI L  I G++
Sbjct: 7   KILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIMLPNIDGID 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++D E    PVI +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 67  VLKWIRKDYET---PVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRR 122


>gi|294635418|ref|ZP_06713908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
 gi|291091207|gb|EFE23768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   AL    +  PD+I++D  L   S
Sbjct: 9   MARRILVVEDETPIREMVSFVLEQNGYQPLEAESYDGALSRLCEPYPDLILLDWMLPGGS 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +K +   ++IPV+ +TA   + D  R  + G + YI KP S    +  IK  +
Sbjct: 69  GIQLIKHLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYIIKPFSPKELVARIKAVM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|262199700|ref|YP_003270909.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262083047|gb|ACY19016.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 397

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN  N+ +  + ++  GY  L   +G EA+ELA + +PD+I++D+ +  I G E 
Sbjct: 22  VLLVDDNPANLAVLFEHLDEHGYRVLVAEDGSEAVELASRIQPDIILLDVMMPGIDGFET 81

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IGE 122
            +Q+K  S L +IP+I +TA     D+    + G   Y++KP      +  ++ +  +  
Sbjct: 82  CRQLKSHSTLSDIPIIFMTALTDTRDKVEGFRAGAVDYVTKPFQHREVLARVRTHVVLRR 141


>gi|24987831|pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
           Bacillus Subtilis
          Length = 136

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E  + L +  +E SGY  +   +G EAL+ A   KPD+I++D+ L ++ 
Sbjct: 2   MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 62  GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 119

Query: 121 GEA 123
             +
Sbjct: 120 RRS 122


>gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 274

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    ++    +  +G+   Q  +G  AL  A    PD++++D+ L  + GLE
Sbjct: 9   RVLVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARWPDLVVLDLMLPGMDGLE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 69  VCRALRGRGP---VPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLRR 124


>gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
 gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
          Length = 243

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    + +  +E  GY  +   +G+ A+++A + +PD+I++D+ L  + 
Sbjct: 1   MQGTILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQQPDLILLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++++      + P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMDVCREVRGHQL--QTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 229

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E +GY  ++  +   A+    +  P+++++D  L   S
Sbjct: 1   MAKRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 230

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D +  + + +  +E  GY    + +G +AL   +    D++++D+ L ++
Sbjct: 1   MSKAHILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNENFDMVLLDVMLPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+++E     E+P+I +TA A + D+    + G + YI+KP  +   +  I+  
Sbjct: 61  DGFTVCKKVRE---FSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +  +++ +  +E  GYI  +  +G EAL++A++  PD+II+D+ L ++ 
Sbjct: 1   MSYRILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + +++      IP++ +TA   + D+    + G + YI+KP S+   +  +K  +
Sbjct: 61  GFSVLRTLRQS---MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea]
          Length = 247

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D     +L    +   GY  +   +G EAL + R+  P++I++DI + ++ G  
Sbjct: 12  TILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIMMPKLDGFG 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+++S   +IP+I +T      D     + G + Y+ KP S       IK  +  +
Sbjct: 72  VCQEIRKES---DIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRS 128


>gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
 gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
          Length = 229

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     ++    +E+ GY   +  NG EA+ L  +  PD++I+D  +  +SG+E+
Sbjct: 8   ILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAMLLVAEALPDLVILDWMMPLLSGIEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q+K   + + IPVI ++A + + D  R  + G + Y+ KP S+   M  ++  +  
Sbjct: 68  CRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRR 125


>gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 234

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 70/119 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E  ++L +  +  +GY  +   NG++AL++A+   P +I++D+ L  + G +
Sbjct: 5   KILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAENPKLILLDLMLPGLDGFD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K++K++ E Q I +I +TA   + D+    + G + YI+KP S+   +  +K  +  
Sbjct: 65  VCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123


>gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED     KL    +   GY      +G EA     ++  D+II+D+ L  + G
Sbjct: 1   MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+ +S L  IPVI +TA + + ++    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVCRKIRGNSSL-HIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLR 119


>gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 230

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED +    L    ++  GY+     +G EAL +A +  PD++I+D  L ++S
Sbjct: 1   MTPYVLVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  SE + +P+I +TA   + D  R    G + Y+ KP S+      ++  +
Sbjct: 61  GIEVCRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 236

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++VED +         +E   Y      +G EALE   +H  D++I+D+ L  + G
Sbjct: 5   TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+++S   ++P+I +TA     D     + G + Y+ KP S    +  ++  + 
Sbjct: 65  ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
 gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
          Length = 229

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    +E  G+  L+  NG EAL +  +  PD+I++D  +  +SG+E
Sbjct: 7   TVLVVEDELAQREVLAYNLEADGFRVLRAENGEEALLIVEEDTPDIIVLDWMMPNLSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K  +E + IP+I ++A + + D+ R  + G + Y+ KP S+   M  ++  +  
Sbjct: 67  VCRRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125


>gi|293392590|ref|ZP_06636910.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
 gi|291424992|gb|EFE98201.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
          Length = 229

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D        R  +E   Y  ++  NG+EAL+  R+H PD++++D+ + E+ G E
Sbjct: 12  TILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRLREHLPDLVVLDVMMPEMDGFE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             K I+E   +  +PV+ +T    + D+ R    G + YI+KP S    +  I+  +  +
Sbjct: 72  TLKAIRE---VSTVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRRS 128


>gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 238

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  +E   Y   +  +G EAL++A  +  +VI++D+ +    G+E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
 gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
          Length = 229

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   AL       PD++++D  +   S
Sbjct: 1   MARRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ KQ+K +   ++IP+I +TA   + D+ +  + G + Y+ KP S    +  +K  +
Sbjct: 61  GIQVIKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 229

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+V++V+D+ L++K+    +   GY      +G+E L L  Q +PDV++ D+ + E+ G
Sbjct: 1   MKRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQEQPDVVVSDVVMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  +Q+++    + +P I +++     D  +  + G + YI KP      +  I+  I 
Sbjct: 61  FEFCRQLRQQRGGELVPFIFLSSRGEIDDRVQGYERGADDYIIKPFEPLELVAKIEAQIE 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 225

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++I++D E+ +K  +  +E  G+      +G E LE  R    D++I+DI L ++ G
Sbjct: 1   MERLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+       IP+I +TA     D     + G + Y++KP +    +  I+  + 
Sbjct: 61  FSVCREIR---TFSNIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 227

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++M+VED E   +L    ++  G+  +   +G +AL+L  ++  D++I+D+ L  + G  
Sbjct: 5   RIMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPMDLVILDVMLPNVDGWT 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QI++     ++P+I +TA   + D+      G + Y+ KP S    +  +K  +  +
Sbjct: 65  VCRQIRQ---GSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRS 121


>gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +IV+D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++++ED E    L    +E +GY    T NG + L++AR+ +P++II+D+ L  +
Sbjct: 1   MKKSKILVIEDEEDIQNLLHINLEAAGYRVFLTDNGYDGLKIAREEQPELIILDLMLPHM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ +++K+D +L++I VI VTA + + D     + G + Y+ KP S+   +  IK  
Sbjct: 61  DGLEVCRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADDYVVKPFSIRELLLRIKAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED +    + R  +E  GY  L   +G + +  A    PD++++D+ L ++ 
Sbjct: 1   MAKNILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+  S    +P++ +TA   + D+    + G + YI+KP  +   +  +K  +
Sbjct: 61  GFQVCRKIRASS---SVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
 gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
          Length = 240

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D      L +  +E +G+      +G    + A++   D+II+D+ L  + 
Sbjct: 1   MAKRILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +Q++++     +P++ +TA   + D+    + G + Y++KP S       ++  +
Sbjct: 61  GMDVCRQLRQEQIF--VPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + MEAL+L  + + D+II+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLEEKEFDLIILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + IP+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIRED---RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
 gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
 gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
 gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
 gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
 gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
 gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
 gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 233

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  L   +G EALE+    +PD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|308185867|ref|YP_003929998.1| phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|317047132|ref|YP_004114780.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|308056377|gb|ADO08549.1| Phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|316948749|gb|ADU68224.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 229

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E + Y  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGKLIEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    M  IK  +
Sbjct: 61  GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 243

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EA++      PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 235

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D    + L +  +E + Y  +   +G +AL LA   K DVI++D+ L ++ G
Sbjct: 1   MSRVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK+++++    + P+I +TA   + D     + G + YI+KP S    +  +K  + 
Sbjct: 61  VEVTKRLRQEKV--KTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
 gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
          Length = 229

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E  G+   +  NG EA+ L  +  PD+I++D  +  +SG+E+
Sbjct: 8   VLVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++K  SE + IP+I ++A + + D  R  + G + Y+ KP S+   M  ++  +  
Sbjct: 68  CRRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLRR 125


>gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
 gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
          Length = 235

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   S
Sbjct: 1   MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    K+++ +   ++IP+I +TA + + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GATFAKELRANDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|323496468|ref|ZP_08101526.1| putative two-component response regulator [Vibrio sinaloensis DSM
           21326]
 gi|323318745|gb|EGA71698.1| putative two-component response regulator [Vibrio sinaloensis DSM
           21326]
          Length = 235

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN+   +   D +  +G+  L   NG    +  +   PD+II+DI +    G 
Sbjct: 4   KRILVVDDNQELREALSDYLGRAGFEVLGAENGRAMWQTLQHTTPDLIILDIMMPGEDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +Q+++DS+   IP+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 64  CLCRQLRQDSQ---IPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    + +  +E  GY  +   +G+ A+++A + +PD+I++D+ L  + 
Sbjct: 1   MQGTILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQQPDLILLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++++      + P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMDVCREVRGHQL--QTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|269928581|ref|YP_003320902.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787938|gb|ACZ40080.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 5/124 (4%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           ++K  V++ +D+   ++L R  ++  GY  +   NG EA+E+  + +PD++I+D+ +  +
Sbjct: 1   MRKDLVLVADDDAPILRLVRTKLQADGYSVVTAMNGREAVEIFERERPDIVILDLMMPVM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E  ++I++ S     PVI +TA + + D+ R    G + Y++KP S       +   
Sbjct: 61  DGFEAMQRIRQMS---NAPVIMLTARSGQADKIRGLDLGADDYVTKPFSPDELSARVAAV 117

Query: 120 IGEA 123
           +  A
Sbjct: 118 LRRA 121


>gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601]
 gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601]
          Length = 237

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +    + +  +   G+      +G EAL+L  + +PD+I++DI L    G+
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLPGRDGV 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKK---YDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRR 120


>gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 227

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I +D +   ++ +  +E  G+  + T +G  AL    +  PD+II+D+ L EIS
Sbjct: 1   MSKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+++S    +P+I +TA     D+    + G + Y++KP      +  +K  +
Sbjct: 61  GWDVCREIRKES---HVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 230

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+    ++    +E +G   +   +G + L +     PD+I++DI + E+ 
Sbjct: 1   MAATILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIGMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE  ++I++     E+P++ ++A   + D     + G + Y++KP S    +  +   +
Sbjct: 61  GLETCRRIRK---TSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 321

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D+ L  ++    +  +G+   +  +G  AL +A    PD++++D+ L  + G+
Sbjct: 56  ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PVI +TA A + D     + G + Y++KP S       ++  +  
Sbjct: 116 EVFRRLRAH---RPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRR 172

Query: 123 A 123
           A
Sbjct: 173 A 173


>gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24]
 gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24]
 gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24]
          Length = 280

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D+    ++    ++ +GY   +  +G EAL  A  H+PD++++D+ L  + GL
Sbjct: 53  ARILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGL 112

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++++       +PVI +TA   + D     + G + Y++KP S    +  ++  +
Sbjct: 113 EVCRRLRGQGP---VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 167


>gi|153873722|ref|ZP_02002207.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Beggiatoa sp. PS]
 gi|152069810|gb|EDN67791.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Beggiatoa sp. PS]
          Length = 299

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M+ K   +++V+D   N+K+    ++   +  L   +G  ALE      PD+I++D+ + 
Sbjct: 140 MMPKRPKILLVDDMPANIKVLFTFLKKQNFELLIAEDGEMALESVLWDHPDLILLDVMMP 199

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ G E+ +++KE+ + ++IPVI +TA +   D+ +  K G   YISKP  +   +  IK
Sbjct: 200 KMDGFEVCQRLKENEKTKDIPVIFMTALSDTIDKIKGFKLGAVDYISKPFDVEEVLLRIK 259

Query: 118 KYI 120
            ++
Sbjct: 260 THL 262


>gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
 gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
          Length = 229

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++++++VED     ++   ++E  GY  ++  +  +ALE   +  P++I+MD  L   S
Sbjct: 1   MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IPV+ +TA   + D+ R  + G + YI+KP S    M  +K  +
Sbjct: 61  GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
 gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
          Length = 233

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L     PD+I++D  L   S
Sbjct: 1   MASTILVVEDEPAIQELISVNLTFAGHKVLRALDAQQAKILIDAELPDLILLDWMLPTTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + ++ D   Q+IP+I +TA   + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GLSLARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 252

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +E  G+       G EA     +  PD++++D  L  +SGLE
Sbjct: 25  RILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLDESLPDLVLLDWMLPGVSGLE 84

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++I+   + + +P+I +TA   + ++ R    G + YI KP S+   M  ++  +  +
Sbjct: 85  ICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRRS 144


>gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
 gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
          Length = 242

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D+    ++    ++ +GY+  +  +G  AL  A  H PD++++D+ L  + GL
Sbjct: 12  ARVLVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHWPDLVVLDLMLPGMDGL 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++       +PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 72  EVCRRMRGRGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +  +++ +  +E  GYI  +  +G EAL++A++  PD+II+D+ L ++ 
Sbjct: 1   MTHRILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + +++      IP++ +TA   + D+    + G + YI+KP S+   +  +K  +
Sbjct: 61  GFSVLRTLRQS---MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 242

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 59/120 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D        +  +   G+  L   +G + L+ A+Q  PDV+I D+ + +  G 
Sbjct: 15  ARILLVDDEPGIRTAVQAYLNDEGFDVLTAIDGEDGLQKAKQFMPDVVITDVMMPQCDGY 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +Q++ED  L   PVI +TA  M  D  +  + G + YI KP      +  +K  +  
Sbjct: 75  ELLRQLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELVARVKNVVKR 134


>gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 253

 Score =  166 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +GMEALE  R+  PD++++D+ + ++ G  
Sbjct: 15  TILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVMMPKLDGYG 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 75  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130


>gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Cupriavidus metallidurans CH34]
          Length = 235

 Score =  166 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   S
Sbjct: 1   MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    K+++ +   ++IP+I +TA + + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GATFAKELRNNDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|262275912|ref|ZP_06053721.1| putative DNA-binding response regulator [Grimontia hollisae CIP
           101886]
 gi|262219720|gb|EEY71036.1| putative DNA-binding response regulator [Grimontia hollisae CIP
           101886]
          Length = 240

 Score =  166 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+D+    +L ++ +  +GY     +NG E         PD+I++DI L    G 
Sbjct: 5   KRILVVDDDLEIRELLQEYLSKAGYNVTTAQNGQEMKAKLAVQYPDLILLDIMLPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K +++DS    +P+I +TA + + D+    + G + YI+KP S    +  I+  +  
Sbjct: 65  TLCKYVRQDS---SVPIIMLTAVSDETDQIIGLELGADDYIAKPFSPRQLVARIRALLRR 121


>gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 225

 Score =  166 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++I++D E+ +K  +  +E  G+      +G E L+  R    D++I+DI L ++ G
Sbjct: 1   MERLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+       IP+I +TA     D     + G + Y++KP +    +  I+  + 
Sbjct: 61  FSVCREIR---TFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 240

 Score =  166 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  +G+      +G +AL +A   +PD++++D+ +  + G 
Sbjct: 12  ARLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMPGLDGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E    +  PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 72  GVVRRLRESG--RHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRR 129

Query: 123 A 123
           +
Sbjct: 130 S 130


>gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 763

 Score =  166 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 2/121 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDNE+N  +  +L+ + G+      NG+EALEL  ++  D++ MDI +  + GLE 
Sbjct: 535 ILVVEDNEVNQMVLSNLLRSQGHQVEVAANGVEALELLDKNNYDLVFMDILMPVMDGLET 594

Query: 65  TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+E  E+    IP+IA+TA A+ GD E+    G + Y++KP+ +    + I K I +
Sbjct: 595 TRRIREQEEITGFHIPIIAITAHAIHGDREKFLAAGMDDYLAKPVQMEELNQAISKIIKK 654

Query: 123 A 123
           A
Sbjct: 655 A 655


>gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  ++  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 233

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  L   +G EALE+    +PD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + I++      +P+I ++A   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LDVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|313884444|ref|ZP_07818205.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620228|gb|EFR31656.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 273

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++IV+D    + L    ++ +GY   Q  +G+ A E+  Q+K D II+D+ L  + G
Sbjct: 1   MEHILIVDDEPSILTLLAYNLQQAGYQVDQADDGLLAYEMIEQNKYDFIILDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++I +++++  +  ++P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  MDICRKVRK--KGSQVPILMLTAKDEEYDKVVGLELGADDYMTKPFSPREVLARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 255

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+IV+D +  + L +  +E  GY  +Q  +G   LELA  H+ D II+D+ L ++ G
Sbjct: 1   MKKVLIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAMNHQLDFIILDLMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ K ++++      P++ +TA   + ++    + G + Y++KP S    +  +K  + 
Sbjct: 61  MDVCKNLRQNKI--NTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAILR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36]
 gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36]
          Length = 228

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++    +E  G+  ++  +  EA++   +  P++I++D  L   S
Sbjct: 1   MSKRILVVEDELAIREMLCFALEQKGFDVVEAGDYNEAVDRLVEPYPNLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K    L  IPV+ +TA   + D+ +  + G + YI+KP S    +  +   +
Sbjct: 61  GIKYIKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|120554687|ref|YP_959038.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120324536|gb|ABM18851.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 782

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN++N  +   L++  G+      NG  ALE  +    D+++MD Q+  + G E 
Sbjct: 657 ILLVEDNQVNQLVASSLLKKLGHRVDHAENGRRALEALQNKTYDLVLMDCQMPVMDGYEA 716

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T+ I+++ + Q +PVIAVTA  M+GD E     G   YI+KP +       I ++
Sbjct: 717 TRAIRQNPQWQTLPVIAVTANVMQGDREDCLASGMNDYITKPYNRDELRAVIARW 771


>gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 218

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+    +  D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 240

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+E   +L    +  +G+  +   +G +AL L  +  PD++++D+ L  + G E
Sbjct: 12  TILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFRENPDLVLLDLMLPGLDGGE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++ D   + +P++ +TA   + +       G + YI+KP S  I +  +K  +  
Sbjct: 72  VCKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALRR 130


>gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
 gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
          Length = 240

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +++IV+D      +    +E +G+  LQ  N  +A      ++PD++++D  +   
Sbjct: 8   MPKHRILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMMPGT 67

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +GLE+ +++K D    + P+I +TA A +  +      G + YI KP S    +  +   
Sbjct: 68  TGLELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAV 127

Query: 120 IGE 122
           +  
Sbjct: 128 LRR 130


>gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 228

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 2/124 (1%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M+    +++VED     ++ R  +E  G+  +Q  NG EAL   ++  PD+I++D  L  
Sbjct: 1   MMPTPTILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQIKEAPPDLILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+EI +Q+K  +  + IPVI ++A + + D+ R  + G + Y++KP S+   M  +K 
Sbjct: 61  VSGIEICRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKS 120

Query: 119 YIGE 122
               
Sbjct: 121 QFRR 124


>gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
 gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
          Length = 234

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 6   MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 66  GIQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 229

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
 gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
          Length = 233

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D +    + +  +   GY  L   +G EALE+     PDVII+D+ L EI G
Sbjct: 1   MKRILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAENPDVIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|319940657|ref|ZP_08015000.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806023|gb|EFW02781.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis
           3_1_45B]
          Length = 241

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D     +L    ++  GY      +G+EA++   +  PD++++D+ +  + 
Sbjct: 1   MNKRILLVDDERNLNQLIATNLKFEGYETESAYSGIEAIDKLGRFSPDLVVLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + ++       IPVI +TA     D  R    G + Y+ KP ++      I+  +
Sbjct: 61  GFEVLEHLR---HASSIPVILLTAKNRVDDRIRGLTLGADDYLGKPFAIDELTARIEAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Angola]
 gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis Angola]
          Length = 230

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 2   MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 62  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 121

Query: 121 GE 122
             
Sbjct: 122 RR 123


>gi|330503901|ref|YP_004380770.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328918188|gb|AEB59019.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 773

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   GY  L   +G EALE+  Q   D+++MD  +  + G 
Sbjct: 650 ARVLLVEDNPVNQMVAKGMLTKLGYQVLVAGHGGEALEILEQQPVDLVLMDCNMPVMDGY 709

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E +++I+ +    E+P++A+TA A+  + ER R  G   Y++KP         +  ++
Sbjct: 710 EASRRIRSNGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDAWL 767


>gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 235

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  +   GY  +   +G EAL +  + KPD++++D  L EI G
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +QI+  SE    PVI VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  VEVLRQIRSKSET---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117


>gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L  + G
Sbjct: 1   MPRILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    EIPV+ +TA +   ++      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
          Length = 249

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D+   ++L    +E SGY   +  +G++   LA Q  PD+I++D+ L  + 
Sbjct: 1   MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++++ D    EIPV+ +TA     D+      G + Y++KP  +   +  ++  +
Sbjct: 61  GFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 232

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D +  ++L +  +   GY   +  +G++ALE+ +  K D++I+DI + +  G
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNSKVDLVILDIMMSDKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+I+ + + + +PVI ++A + + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 61  YEILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 233

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  +   +G EALE+     PD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+E  +K+    +E  GY  +  R+G EA++ ARQ  PD++++D+ L  + G  
Sbjct: 2   KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+      ++P+I +TA   + D     + G + Y+ KP S    +  ++     
Sbjct: 62  VCKEIR---RTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR 117


>gi|91779864|ref|YP_555072.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
 gi|91692524|gb|ABE35722.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
          Length = 1651

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 61/113 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN    +    ++  +G+      +G  ALE ARQ +PD+++ D+ +  + G  
Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHEVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG 720

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + + ++ D EL++ PV+ ++A A +       + G + Y++KP S    +  +
Sbjct: 721 LLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 773



 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61
             V++VED+E       +++   GY  L+ ++   AL +     P DV+  D+ +   +  
Sbjct: 1378 TVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLRS 1437

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMETIKKYI 120
             E+ ++ +E   L  I V+  + +             G    +SKP +       I+  +
Sbjct: 1438 TELARKARE--RLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKIRYVL 1494



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VED+EL      +L+    +  L+     +A ++  +H   V++ D+ L   SG++
Sbjct: 1536 RILLVEDDELVRASTAELLRMFEFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1595

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  ++       ++ VI +T + +    E+ +       + KP  L   ++ +K  + 
Sbjct: 1596 LALEVCA--GRPDLRVIFLTGYDLVLTPEQRKVLPHAILLRKPYDLLDLIDALKTPLR 1651


>gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
 gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
          Length = 229

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++++++VED     ++   ++E  GY A++  +   ALE   +  P++I+MD  L   S
Sbjct: 1   MVRRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IPV+ +TA   + D+ R  + G + YI+KP S    M  +K  +
Sbjct: 61  GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 236

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 65/120 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E    L    +   GY  ++  +G  ALE+  +  PD+II+D+ L  + G E
Sbjct: 5   KILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICYESLPDLIILDLMLPIMDGWE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K+D   ++IP+I +TA   + D     + G + Y+ KP SL+     IK  +  A
Sbjct: 65  VCRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRRA 124


>gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 233

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  +   +G EALE+     PD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|257487351|ref|ZP_05641392.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289626864|ref|ZP_06459818.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649144|ref|ZP_06480487.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|320322868|gb|EFW78959.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329823|gb|EFW85811.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867867|gb|EGH02576.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330874323|gb|EGH08472.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330988064|gb|EGH86167.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009049|gb|EGH89105.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 245

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +      +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 229

 Score =  166 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  ++  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCMEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D      L +  +   G+   +  +G EA+ L +    D++++D+ L  + G
Sbjct: 1   MPKILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I K+I++     ++PVI +TA   + D     + G + YI KP S    +  +K  + 
Sbjct: 61  LTICKEIRK---FSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 233

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  L   +G EALE+     PD+II+D+ L EI G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D++   ++   ++   GY    + +G  ALE   + +PD++++D+ L  + G+E
Sbjct: 9   RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLMLPGMDGIE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ +S    +P+I +TA     D     + G + Y++KP      +  IK  +  +
Sbjct: 69  VCRRLRRESG---VPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRRS 125


>gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
 gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
          Length = 229

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 64/119 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ED     ++     E  GY      NG  AL    +  PD+I++D  L  +SG+E
Sbjct: 7   HILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEPPDLIVLDWMLPGVSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +QIK  +E + IPVI ++A + +GD+ R  + G + Y++KP S++  +   +  +  
Sbjct: 67  ICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRR 125


>gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G  AL       P++I++D+ L  + G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLMLPGMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I++ S    +P+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 65  QVCREIRQKS---NVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRR 121


>gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL
           F2-208]
 gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           N1-067]
 gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           S4-171]
          Length = 237

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +    + +  +   G+      +G EALEL  + +PD+I++DI L    G+
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120


>gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 229

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D    ++L    ++  GY      NG E + +A++  PD+II+DI + ++ G+
Sbjct: 6   QKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKKVHPDLIILDIMMPKMDGI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + ++   E +   ++ +TA + +  E      G + YI+KPI     +  I   +  
Sbjct: 66  EACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRR 125


>gi|302866838|ref|YP_003835475.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503253|ref|YP_004082140.1| response regulator receiver modulated diguanylate cyclase
           [Micromonospora sp. L5]
 gi|302569697|gb|ADL45899.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315409872|gb|ADU07989.1| response regulator receiver modulated diguanylate cyclase
           [Micromonospora sp. L5]
          Length = 318

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 60/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+E   +     +   G+  L   +G EALE+  + +PD+ ++D+ +  I GLE+
Sbjct: 11  ILVVDDDEDIARFVEFNLRLHGFEVLHAADGQEALEVIERQRPDLAVVDLMMPRIDGLEL 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++++ D     +PVI +TA  M  D+      G + Y+ KP      +  +   +  
Sbjct: 71  TRRLRADPMTSALPVIMLTAKGMTQDKVNGLSVGADDYLVKPFDTLELVARVNSTLRR 128


>gi|260775446|ref|ZP_05884343.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608627|gb|EEX34792.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1128

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D  +N+++    +   GY     +NG EA+E     KP+++++DI +  +SG ++ 
Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVRTAKNGEEAVESVVHEKPELMLLDIMMPGMSGYQVC 784

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++D +  ++PVI +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 785 EVLRKDYDHAQLPVIMLTALNQPDDRVRGFEAGANDYLSKPFNKQELAARITAHL 839


>gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1]
 gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 229

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123


>gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 235

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  +   GY  +   +G EAL +    KPD++++D  L EI G
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +QI+  SE   IPVI VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  VEVLRQIRSKSE---IPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117


>gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus]
          Length = 267

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    ++    +  +GY   Q  +G  AL     H+PD++++D+ L  + G E
Sbjct: 19  RVLVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAHRPDLVVLDLMLPAMDGFE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++E      +PVI +TA   + D     + G + Y++KP S    +  +   +
Sbjct: 79  VCRRMREHGP---VPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVL 132


>gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +IV+D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 228

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D++      R  +  +GY      NG E L++A  + PD++I+D  + ++ G+E+
Sbjct: 6   ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K+++       IP++ +TA     D  +  + G + Y+ KP +    +  +K  +  A
Sbjct: 66  CKRLRSAD---NIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRA 121


>gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
 gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
          Length = 233

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL      D++++D+ L  I G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TTLCRRIREQSR---VPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|329296532|ref|ZP_08253868.1| winged helix family two component transcriptional regulator
           [Plautia stali symbiont]
          Length = 229

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E + Y  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAIGKLIEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    M  IK  +
Sbjct: 61  GIQFIKHLKREAMTRDIPVMMLTALGEEEDRVRGLELGADDYITKPFSPKELMARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 232

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +L +K  R  +E  G       +G EAL+LA  +  D+I++D+ L ++ 
Sbjct: 1   MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHYDMILLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+E      +P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQSIRE---FSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 235

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  + 
Sbjct: 1   MMTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+E S    +P+I +TA + + D+    + G + YI+KP S    +  I+  +
Sbjct: 61  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 226

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK ++V+D ++ +K  +  +E    I     +G EAL+ AR ++ D+I++D+ L  ++
Sbjct: 1   MSKKALVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPIMT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+E      +P+I +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQQIRE---FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
 gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
          Length = 235

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  L+  +  +A  L     PD++++D  L   +
Sbjct: 1   MSSTILVVEDEPAIAELIAVNLSFAGHKVLRAADADQAKTLITAELPDLVLLDWMLPGKT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++   +++     + +PVI +TA   + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFAHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 228

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++V+D     K+    +E  G+      +G  ALE     +P +II+DI L ++ G
Sbjct: 5   TRRILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIMLPKLDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+  S   ++P++ +TA   + D     + G + Y++KP ++   +  ++  + 
Sbjct: 65  TEVCRRIRAQS---DVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMR 121

Query: 122 EA 123
            A
Sbjct: 122 RA 123


>gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 229

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 60/123 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D     ++    +    Y  +   +  EA        PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++ ++++  +E+P+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 230

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IV+D     ++    +E + Y  L+  +  EA  L     PD++++D  L   SG+
Sbjct: 4   KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKHPDLVLLDWMLPGTSGV 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K++    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 229

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  ++  +   A+    +  P+++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRLAEPYPELVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 240

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++VED +         +E   Y      +G +ALE   +H  D++I+D+ L  + G
Sbjct: 8   TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+++S   ++P+I +TA     D     + G + Y+ KP S    +  ++  + 
Sbjct: 68  ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 223

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++V+D +   +L    +   G+  L+  NG EALE+      D+ I+D+ +  + 
Sbjct: 1   MKAKVLVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + +KE    +++PVI +TA     D+ R    G + Y+ KP   +  M  ++  +
Sbjct: 61  GFELVENLKE---FKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
 gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  166 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D +   +L +  +E  GYI  +  +G EA+E A     D+I++D+ +  I G+
Sbjct: 5   QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ KQI+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  
Sbjct: 65  EVCKQIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 233

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  K+++V+D E  + + +  +E   Y  +   +G EA++L ++    ++I+D+ L +
Sbjct: 1   MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ISG E+  +I+E      + +I +TA   + D+      G + Y++KP S+   +  +K 
Sbjct: 61  ISGEEVCSKIRE---FSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117

Query: 119 YIGEA 123
            I  A
Sbjct: 118 LIRRA 122


>gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct]
          Length = 230

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +    G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLKAVLRR 123


>gi|309792798|ref|ZP_07687241.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225162|gb|EFO78947.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 238

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D    +   R  +E  G       NG EAL+ AR   PDVI++D+ +  + G E 
Sbjct: 9   VLVVDDEPRMINFMRLNLELEGMRVATAANGREALDRARDDMPDVILLDVMMPVMDGFEA 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++     ++P++ +TA   + D  R  + G + YI KP S    +  I+  +  
Sbjct: 69  LRRLRQ---FSQVPILMLTAKDEEEDRVRGLELGADDYIGKPFSHRELISRIRAVLRR 123


>gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 230

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D +  + + +  +E  GY    + +G +AL   +    D++++D+ L +I
Sbjct: 1   MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRIKSGNFDMVLLDVMLPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+++E     ++P+I +TA A + D+    + G + YI+KP  +   +  I+  
Sbjct: 61  DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
 gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
          Length = 229

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123


>gi|66044362|ref|YP_234203.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63255069|gb|AAY36165.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 245

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +          D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 229

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D    +K  R  +E  G+      +G EAL   R    D+I++D+ L  + G
Sbjct: 1   MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++        P+I +TA A   D+    + G + YI+KP +    +  I+  + 
Sbjct: 61  LTICREVRAAGMT---PIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
 gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
          Length = 239

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 11  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 71  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130

Query: 121 GE 122
             
Sbjct: 131 RR 132


>gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912]
 gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  L   +G EALE+     PDVII+D+ L EI G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDVIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 224

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+    +L    +   G+   +  NG +AL +    K D++I+DI + EI G
Sbjct: 1   MPRILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDTVKVDLVILDIMMPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   I++     +IP++ +T      D+ +  + G + Y+ KP      +  +K  + 
Sbjct: 61  WQLCHNIRKY--YGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 235

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+D +    + +  +E  GY  +   +G EA+E+  +H+PD+I++DI L    G+
Sbjct: 4   QKILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIMLPYQDGM 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKKF---DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRR 120


>gi|187735605|ref|YP_001877717.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425657|gb|ACD04936.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 234

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I ED+     L    +E +G+  L   +G+ ALE+AR+ KP++I++D  +  + G
Sbjct: 1   MATILIAEDDHAISDLVAYNLERAGHTPLAAYDGLTALEVARRDKPELILLDQMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ DS  Q IPVI +TA A   D  +  + G + Y++KP S    +  +   + 
Sbjct: 61  HGVLRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVLK 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
 gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
          Length = 229

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     ++    +E+ G+   +  NG EA+ L  +  PD+II+D  +  +SG+E+
Sbjct: 8   ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q+K   + + IPVI ++A + + D  R  + G + Y+ KP S+   M  ++  +  
Sbjct: 68  CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRR 125


>gi|269964977|ref|ZP_06179142.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B]
 gi|269830280|gb|EEZ84505.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B]
          Length = 235

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN    +   D +  +G+  L   NG    +L   H PD+II+DI +    G 
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIMMPGEDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++++S   +IP+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 64  TLCQKLRKNS---DIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911]
 gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L +  +E   Y+  +  +G EALE A +   DVI++D+ +    G+E
Sbjct: 6   KILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAFETDYDVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PVI +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 66  VCRELRER---KATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRS 122


>gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 232

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++I +D    +K     ++  G+      NG +AL    + +PD++++D+ + ++ G 
Sbjct: 4   KKILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNRWQPDLLVLDVMMPKMDGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+E S    +P+I +TA     D+      G + Y++KP   +  +  I+  +  
Sbjct: 64  EVCRKIREQS---NVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRR 120


>gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + +EAL+L  + + D+II+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y++KP +    +  +K  +
Sbjct: 61  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|186683295|ref|YP_001866491.1| response regulator receiver protein [Nostoc punctiforme PCC 73102]
 gi|186465747|gb|ACC81548.1| response regulator receiver protein [Nostoc punctiforme PCC 73102]
          Length = 125

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D     +     ++  GY      +G  A++   +  PDVI++D+ L E+ G
Sbjct: 1   MPHVLLVDDEAALCESLTYTLQKEGYTVTTAADGHSAIKQFHKQVPDVILLDLMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+  +I+       +P++ +TA     D+    + G + YI+KP +    +  IK  + 
Sbjct: 61  MEVCWRIRA---FSNVPIVMLTAKDEDIDKIWGLEAGADDYITKPFNTRELLARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
 gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 248

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 63/117 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IVED E  ++L +  +++ GY      +G  AL +  + +PD++++D  L ++SG+E+ 
Sbjct: 24  LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLPKLSGIEVC 83

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++++       +P+I +TA   + D  R    G + YI KP S++     I+  +  
Sbjct: 84  RRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRR 140


>gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 242

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + ++I+ED+    +  R  +E  G +    T  G   L    +H P++I++DI L  +
Sbjct: 1   MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G EI ++++ +     +P+I +TA   + D+      G + YI+KP S+   M  I   
Sbjct: 61  NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|330974665|gb|EGH74731.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 193

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +          D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 280

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 48  MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 107

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 108 GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 164

Query: 121 GE 122
             
Sbjct: 165 RR 166


>gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
 gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
          Length = 239

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 11  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 71  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130

Query: 121 GE 122
             
Sbjct: 131 RR 132


>gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 237

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     ++    +   GY      +G+EAL++    +PD+II+D+ + ++ G  +
Sbjct: 8   ILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQRPDLIILDVMMPKLDGYGV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++ S    +P+I +TA +   D     + G + Y+ KP SL      ++  +  
Sbjct: 68  CQAVRKASR---VPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRR 122


>gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 235

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D      L R  +E  G+   +  +G EALE  R  +PD++++DI L  I G  
Sbjct: 2   RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGWA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ +S   ++P+I +TA     D     + G + Y+ KP +    +  I+  +  
Sbjct: 62  VCRILRRES---DVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117


>gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
          Length = 228

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED      +    +E  G+  +Q  NG EA+ +  +  PD+I++D  L  +SG+E
Sbjct: 6   TVLVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEETPDIIVLDWMLPAVSGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K   + + IP+I ++A + + D  R  + G + Y+ KP S+   M  ++  +  
Sbjct: 66  VCRRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRR 124


>gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 231

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D     +  +D ++ SG+      N  E  +L +Q  PD++I D+ + ++ 
Sbjct: 1   MSAQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  KQ++ED   Q +PV+ +TA  M  D  +  + G +AY+ KP      +  I+  +
Sbjct: 61  GYQFLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLL 120

Query: 121 GE 122
             
Sbjct: 121 TR 122


>gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 228

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K++IV+D+E   ++ +  +E+SGY      +G  A     ++KPD++++D+ L  + 
Sbjct: 4   MLGKILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFFEYKPDLVLLDVMLPHMD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K I+ DSE   IPVI +TA     D+    + G + YI KP      +  IK  +
Sbjct: 64  GIDVLKWIRRDSE---IPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
          Length = 232

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +IV+D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
 gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
          Length = 230

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     ++    +E +GY+ LQ  +   A  L    +PD+I++D  L   SG+
Sbjct: 4   KTILIVDDESAICEMVTVALEMAGYVCLQAADAKAAHTLIVDKRPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K+D     IP+I +TA   + ++    + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|309790814|ref|ZP_07685358.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227101|gb|EFO80785.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 406

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D+ +N+K     +E  GY  L+  +G  ALE+A +  PD++I+D+Q+ E  
Sbjct: 1   MAQRILVVDDSPINIKAVALALEAIGYEILEATDGRMALEVAAETLPDMLILDVQMPEFD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++        P++ ++A     +  +  + G + Y++KP         +K  +
Sbjct: 61  GYEVCRRLRRQPAFMTRPILMLSANNALHERVQGLEAGADDYMAKPFEAEELQARVKALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|104780757|ref|YP_607255.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95109744|emb|CAK14447.1| putative sensor histidine kinase/response regulator hybrid
           [Pseudomonas entomophila L48]
          Length = 784

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  + + ++   G       +G EALEL  Q   D+++MD  +  + G 
Sbjct: 663 ARILLVEDNPVNQLVAKGMLAKLGCQVQVAAHGAEALELLEQETFDLVLMDCNMPVMDGY 722

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E +++I++     E+P++A+TA AM  + ER R  G   Y++KP      +  I  +
Sbjct: 723 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALIDHW 779


>gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IV+D     +L ++ +   GY  L T +G  AL +AR   PD+I++DI +  + 
Sbjct: 1   MSKTILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  +Q +++   ++ PVI +TA   + D       G + YI KP  +      I+  +
Sbjct: 61  GYQFLRQFRQE---RQTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL
           F2-515]
          Length = 220

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +    + +  +   G+      +G EALEL  + +PD+I++DI L    G+
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120


>gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
 gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V++V+D +L +K  R  +E  G       +G EAL+LA+++  D+I++DI L +  
Sbjct: 1   MSRRVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIMLPKHD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+E     ++P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQQIRE---FSDVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|213498008|emb|CAR92187.1| PhoB protein [Serratia sp. ATCC 39006]
          Length = 229

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  ++  +   A+    +  P+++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAINQLTEPYPELVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHMKRETLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165]
 gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165]
          Length = 238

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  +E   Y   +  +G +AL +A  +  +VI++D+ +    G+E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|71737172|ref|YP_273446.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557725|gb|AAZ36936.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 245

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +      +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|28901520|ref|NP_801175.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363072|ref|ZP_05775941.1| response regulator GltR [Vibrio parahaemolyticus K5030]
 gi|260880359|ref|ZP_05892714.1| response regulator GltR [Vibrio parahaemolyticus AN-5034]
 gi|260894726|ref|ZP_05903222.1| protein GltR [Vibrio parahaemolyticus Peru-466]
 gi|260900076|ref|ZP_05908471.1| response regulator GltR [Vibrio parahaemolyticus AQ4037]
 gi|28810067|dbj|BAC63008.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308089446|gb|EFO39141.1| protein GltR [Vibrio parahaemolyticus Peru-466]
 gi|308091700|gb|EFO41395.1| response regulator GltR [Vibrio parahaemolyticus AN-5034]
 gi|308110048|gb|EFO47588.1| response regulator GltR [Vibrio parahaemolyticus AQ4037]
 gi|308112437|gb|EFO49977.1| response regulator GltR [Vibrio parahaemolyticus K5030]
          Length = 235

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN    +   D +  +G+  L   NG    +L   H PD+II+DI +    G 
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIMMPGDDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++++S   +IP+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 64  TLCQKLRKNS---DIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262]
 gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL
           J2-064]
 gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL
           J1-208]
 gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262]
 gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816]
 gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220]
 gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes
           str. Scott A]
          Length = 237

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +    + +  +   G+      +G EALEL  + +PD+I++DI L    G+
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120


>gi|304395459|ref|ZP_07377342.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356753|gb|EFM21117.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 229

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   ++E + Y  ++  +   A+    +  PD+I++D  L   S
Sbjct: 1   MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGRLIEPWPDLILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    M  IK  +
Sbjct: 61  GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + + +  +   GY  +   +G EA+E+A    P++I++D+ L +  
Sbjct: 1   MGQKILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVMLPKQD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K+++E       P+I +TA   + D+    + G + Y++KP  +   M  IK  +
Sbjct: 61  GFQVCKKLREKLA---CPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus
           Kuenenia stuttgartiensis]
          Length = 230

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D    + L    +E  GY  +   +G  ALEL++  +P +II+DI L  ++
Sbjct: 1   MNETILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALELSKSERPALIILDIMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K++K D  L +  +I +TA   + D  R  K G + Y++KP S    +  +   +
Sbjct: 61  GLEVCKRLKSDEALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate
           sensing [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D    ++L    +  +G+  L   NG + L +AR+ + D++I+D+ L  I G E
Sbjct: 7   RILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVMLPGIDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++  SEL   PV+ +TA   + D     + G + Y++KP S       +K  +  A
Sbjct: 67  VLRALRRHSEL---PVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRA 123


>gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 229

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D    ++L    ++  GY      NG E + +A++  PD+II+DI + ++ G+
Sbjct: 6   QKILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKKVHPDLIILDIMMPKMDGI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + ++   E +   ++ +TA + +  E      G + YI+KPI     +  I   +  
Sbjct: 66  EACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRR 125


>gi|90579403|ref|ZP_01235213.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
 gi|90440236|gb|EAS65417.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
          Length = 229

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++++++VED     ++   ++E  GY A++  +   ALE   +  P++I+MD  L   S
Sbjct: 1   MVRRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IPV+ +TA   + D+ R  + G + YI+KP S    M  +K  +
Sbjct: 61  GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 248

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++V+D    +K+    ++ +GY      NG EALE   +  PD+I++D+ L ++
Sbjct: 1   MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+ +S    +P+I +TA     +       G + Y+SKP S       I   
Sbjct: 61  DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 236

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K V++VED      L +  +E +G+  L   +G   L+ A +  PD+I++D+ L ++ 
Sbjct: 1   MVKTVLVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQSPDLILLDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++       IP+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCKELRRLRI--NIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D     +  ++ ++ SG+      N  E  EL +Q+ PD++I DI + ++ 
Sbjct: 1   MSAQLLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDIMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  KQ+++D  L  +PVI +TA  M GD  +  + G +AY+SKP      +  I   +
Sbjct: 61  GYQFLKQLRDDPRLASLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLL 120


>gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 230

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED +    L    ++  GY      +G EAL LA +  PD++I+D  L ++S
Sbjct: 1   MTPYVLVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  +E + +P+I +TA   + D  R    G + Y+ KP S+      ++  +
Sbjct: 61  GIEVCRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator
           transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
 gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator
           transcriptional regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 60/123 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D     ++    +    Y  +   +  EA        PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++ ++++  +E+P+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + +EAL+L  + + D+I++D+ +  + 
Sbjct: 1   MSDKILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLEEKEFDLILLDVMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+E+   Q IP+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACLKIREE---QTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|83945515|ref|ZP_00957862.1| stalked-cell differentiation controlling protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851091|gb|EAP88949.1| stalked-cell differentiation controlling protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 450

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N +L    +    +  L  ++G   L+LAR  KPDVI++DI +  + 
Sbjct: 1   MSARILVVDDIETNRRLLEARLTAEYFDVLMAQDGPTCLDLARCEKPDVILLDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  +++K D E + IPV+ VTA   + D  R  + G + +++KP+        ++  +
Sbjct: 61  GFETCRRLKADPETRHIPVVMVTALDQRSDRIRGLEAGADEFLTKPVDDVALFARVRSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 14  NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73
             +     ++  GY      +   A+  AR    D++I+D+      GL +  +I+ D +
Sbjct: 164 IARALPATLDAHGY-----GDPKIAISQARHA--DLVIVDLSSPRFDGLRLCARIRSDVD 216

Query: 74  LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++P++ V     K    R    G    IS+P+            +  
Sbjct: 217 TRQVPLLGVVDEMDKRTMVRALDLGVNDVISRPLDPGELSARSATQLKR 265


>gi|330938965|gb|EGH42452.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330975743|gb|EGH75809.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 245

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +          D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
 gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
          Length = 230

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED E    L +D +E SG+      +G   L      + D+II+D+ L  + 
Sbjct: 1   MSKRILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI +QI+     +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++
Sbjct: 61  GFEICRQIRGQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117

Query: 121 GE 122
             
Sbjct: 118 AR 119


>gi|302186956|ref|ZP_07263629.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 245

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +          D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
 gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
          Length = 227

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   +++  GY  +   +G  AL   ++H PD++++D+ L  + 
Sbjct: 1   MSSRILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I+    + + P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GFDVCRAIR---RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 230

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +L +K  R  +   G       +G EAL +A+ +  D+I++D+ L ++ 
Sbjct: 1   MAKKVLVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+E     ++P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQAIRE---FSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|330950929|gb|EGH51189.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 245

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +          D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  +  +   GY      +G +AL+ A  ++PD++++DIQ+  + GL
Sbjct: 11  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDIQMPRMDGL 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+   +    P++ +TA    GD       G + Y+ KP  L      ++  +  
Sbjct: 71  TAARRIRGAGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I++D E+ +K  +  +E  G+      +G E L+  R    D++I+DI L ++ G
Sbjct: 1   MEKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+       IP+I +TA     D+    + G + Y++KP +    +  I+  + 
Sbjct: 61  FSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|158334336|ref|YP_001515508.1| two-component response regulator [Acaryochloris marina MBIC11017]
 gi|158304577|gb|ABW26194.1| two-component response regulator, putative [Acaryochloris marina
           MBIC11017]
          Length = 375

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+ +   L R  +E  GY      +G E L  A+Q  P +II D  +  + G
Sbjct: 1   MVKILIIDDDPITQLLLRRTLEKQGYQVTVASDGQEGLSKAQQLCPALIICDWMMPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +Q+K + +L     I +T+ +   D       G + +++KPI +S     ++  + 
Sbjct: 61  IGVCQQLKSNPQLSATFFILLTSRSDLEDRIAGLNAGADEFLTKPIDMSELRARVRAGLR 120


>gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 244

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL   R   PD++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D    + L    ++ + +      NG +AL +   +  D++++D+ L E+SG
Sbjct: 1   MKKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ D    + PVI +TA   + D+    + G + Y+ KP S    +  I   + 
Sbjct: 61  EEVLKRIRMDRN--DTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|254505752|ref|ZP_05117898.1| two-component system response regulator [Vibrio parahaemolyticus
           16]
 gi|219551405|gb|EED28384.1| two-component system response regulator [Vibrio parahaemolyticus
           16]
          Length = 235

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN    +   D +  +G+  +   NG E  +  ++H PD+II+DI +    G 
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVIGAGNGREMWQQLKKHTPDLIILDIMMPGDDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ DS+   IP+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 64  TLCQKLRRDSQ---IPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++V+D    +K+    ++ +GY      NG EALE   +  PD+I++D+ L ++
Sbjct: 1   MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+ +S    +P+I +TA     +       G + Y+SKP S       I   
Sbjct: 61  DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|159898864|ref|YP_001545111.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891903|gb|ABX04983.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 243

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    +   R  +E  G   +   NG +ALE  R+  PD +++DI +  + G E 
Sbjct: 13  ILVVDDEPRLVTFMRVNLEAEGCRVISAENGRKALEKVREDMPDAVLLDIMMPGLDGYET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++E      IPVI +TA   + D  R  + G + YI KP S    +  ++  +  
Sbjct: 73  LRRLRE---FSSIPVIFLTAKDEEDDRIRGLELGADDYIGKPFSHRELVSRLRAVLRR 127


>gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +V+I +D +    L +  +E   Y      +G EAL+L   +  +++I+D+ + +I
Sbjct: 1   MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++ ++    IP++ +TA   + D+      G + YI+KP S++  +  IK  
Sbjct: 61  DGIEVCRRLRNNT---NIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis KIM 10]
 gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
 gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM
           10]
 gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis
           D106004]
 gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis
           D182038]
 gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
          Length = 239

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 11  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 71  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130

Query: 121 GE 122
             
Sbjct: 131 RR 132


>gi|312883993|ref|ZP_07743710.1| sensory box sensor histidine kinase/response regulator [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368451|gb|EFP95986.1| sensory box sensor histidine kinase/response regulator [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 1127

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+++    ++T GY  L   +G+ ALE  R   P +I++DI + ++SG ++
Sbjct: 723 ILVVDDEPINLRILNSYLKTEGYRVLTVNDGLSALEAVRNETPQLILLDIMIPDMSGYDV 782

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++  +   +P+I +TA     D  +    G   ++SKP +    +  I  ++  +
Sbjct: 783 CVKLRKTYDHATLPIIMLTALNQTEDRLKGFASGANDFLSKPFNQKELLARITAHLAAS 841


>gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 245

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  +  +   GY      +G +AL +A  + PD+I++DIQ+  + GL
Sbjct: 9   QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDIQMPRMDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+        P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 69  TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126

Query: 123 A 123
           +
Sbjct: 127 S 127


>gi|182415603|ref|YP_001820669.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177842817|gb|ACB77069.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 376

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 68/117 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N++L +  +E  G       NG+EAL+L R+ KPD+I++D+ + ++ G+E+
Sbjct: 6   ILVVDDQPINVQLLKRKLEREGIQVTAAYNGLEALDLVRKTKPDLILLDVMMPDMDGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++++ D   + IP+I +TA   K  +      G   YI+KPI L   +  ++  + 
Sbjct: 66  CQRLQADELTRSIPIIFITARTSKEGKIEGLNVGAVDYITKPIDLDETLARVQTQLR 122


>gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 234

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D     ++    ++  GY      +G  A+E A     D++++D+ L E+ 
Sbjct: 1   MSKHILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++        P++ ++A A + D     + G + Y++KP S    +  ++  +
Sbjct: 61  GLEVCRRLRA---GSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
 gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
          Length = 237

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     K+ +  +E   +  +   +G+ AL+L +Q  PD+II+D+ L ++ GLE
Sbjct: 2   KILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQAPDLIILDLMLPKLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 62  VCTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRS 121


>gi|296535607|ref|ZP_06897787.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
 gi|296264062|gb|EFH10507.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
          Length = 459

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N++L    +    Y      +G EAL  A    PD+I++D+ +  + 
Sbjct: 1   MSARILVVDDIAANLRLLEARLNAEYYEVALASSGPEALSRAEDWMPDIILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K  +    IPV+ VTA     +  R  + G + ++SKP+  S     ++  +
Sbjct: 61  GYEVCRRLKASTATAHIPVVMVTALVDASERVRGLEAGADDFLSKPVDHSTLFARLRALL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 55.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 45/110 (40%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++  ++    +L   ++   G     T    +A +   +   D+ ++ + L    GL +
Sbjct: 156 ILLATEDVNEAELLTGVLAVDGVTLRLTGTATQAWQALSEGAFDLALLSLSLDGGEGLRL 215

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
             +++  +  +++PV+ +      G   R  + G   ++ +P+  +    
Sbjct: 216 ASRLRAQAATRDLPVLLIADADQHGLVLRGFELGANDHVLRPVDPNELRA 265


>gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + MEAL+L  + + D+II+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+E+   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIREN---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254424776|ref|ZP_05038494.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192265|gb|EDX87229.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 262

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L +  +   G+     R+G  AL+  R  +PD+II+D+ +  + GLE+
Sbjct: 3   ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++ +E+++  ++ +TA   + D       G + YI KP S    +  ++  +  +
Sbjct: 63  CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRS 121


>gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 241

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED +         +E  GY+     +G  ALE   +H  D+I++D+ L ++SG 
Sbjct: 6   KRILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSFDLIVLDLMLPKLSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++E      +P+I +TA     D     + G + Y+ KP S    +  ++  +  
Sbjct: 66  RVCRAVRE---TSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRR 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
 gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 63/118 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E  G+   +  +G EA+ L  +  PD++I+D  +  +SG+E+
Sbjct: 8   VLLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q+K     + IPVI ++A + + D  R  + G + Y+ KP +L   M  ++  +  
Sbjct: 68  CRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRR 125


>gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
 gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
          Length = 229

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     ++    +E+ G+   +  NG EA+ L  +  PD+II+D  +  +SG+E+
Sbjct: 8   ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q+K   + + IPVI ++A + + D  R  + G + Y+ KP S+   M  ++  +  
Sbjct: 68  CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRR 125


>gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum]
          Length = 240

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++++D     ++    +   GY  +   +G EAL + ++  P+++++D+ + ++
Sbjct: 1   MQKEKILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++++++S   ++P+I +TA +   D     + G + YI KP S       I+  
Sbjct: 61  DGYGVCQELRKES---DVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 247

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D E   KL    +   GY    + +G  A +LA +   D II+D+ L  + G
Sbjct: 1   MKKVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLMLPSMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ KQ+++D      P++ +TA   + ++    + G + Y++KP S    +  +K  + 
Sbjct: 61  MDVCKQLRQDKV--NTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|262404218|ref|ZP_06080773.1| putative two-component response regulator [Vibrio sp. RC586]
 gi|262349250|gb|EEY98388.1| putative two-component response regulator [Vibrio sp. RC586]
          Length = 236

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN+   +  +D +  +G+  +   NG    +L   H PD+II+DI +    G 
Sbjct: 5   KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIMMPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++ S    +P+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 65  TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|224371412|ref|YP_002605576.1| putative chemotaxis response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223694129|gb|ACN17412.1| putative chemotaxis response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 396

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 67/116 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+++    +E  G   L  +NG  AL +A++ +PD+I++DI +  I G E+
Sbjct: 25  ILLVDDQPVNLQVLMHTLERLGCKLLVAKNGETALTIAQKARPDLILLDIMMPGIDGFEV 84

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D   Q+IPVI ++A    GD+ R  + G   Y++KP      +  +  ++
Sbjct: 85  CRRLKADPSTQKIPVIFLSALDDTGDKVRGLQLGAVDYVAKPFQPEEVIARVNTHL 140


>gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 229

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++++++VED     ++   ++E  GY A++  +   ALE   +  P++I+MD  L   S
Sbjct: 1   MVRRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K D   ++IPV+ +TA   + D+ R  + G + YI+KP S    M  +K  +
Sbjct: 61  GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
 gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
          Length = 229

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  ++  +   A+    +  P+++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRLAEPYPELVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 228

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    +  +G+  ++  +  +A  L R+  PD+I++D  L  +S
Sbjct: 1   MPANILVVEDEPAIQELLALNLTQAGHNPVRALSVEQAQMLIREALPDLILLDWMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  +++K D   + IP+I +TA   + D+ R  + G + Y++KP S       IK  +
Sbjct: 61  GIEFARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales
           bacterium HTCC2654]
          Length = 229

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 64/118 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++ R  + + GY      NG +A+ L  +  PD+I++D  L  +SG+EI
Sbjct: 8   VLLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVEEIGPDLILLDWMLPGVSGIEI 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++K   E  +IPVI ++A + + D  R  + G + Y+ KP S+   M  I+  +  
Sbjct: 68  CRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRR 125


>gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 243

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IV+D     +  +  +   GY      +G +AL  A  + PD+I++DIQ+  + GL
Sbjct: 9   QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDIQMPRMDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+        P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 69  TAARRIRSTGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126

Query: 123 A 123
           +
Sbjct: 127 S 127


>gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 246

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|153838150|ref|ZP_01990817.1| two component transcriptional regulator, winged helix family
           [Vibrio parahaemolyticus AQ3810]
 gi|149748466|gb|EDM59325.1| two component transcriptional regulator, winged helix family
           [Vibrio parahaemolyticus AQ3810]
          Length = 226

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN    +   D +  +G+  L   NG    +L   H PD+II+DI +    G 
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIMMPGDDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++++S   +IP+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 64  TLCQKLRKNS---DIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 238

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++VED     +     ++  GY      +G+ AL+LAR+ +P++I++D+ L  + 
Sbjct: 1   MAEKILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++++      PV+ +TA   + D     + G + Y++KP S+   +  +K  +
Sbjct: 61  GFELCRRLRQE---MNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAML 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|298485851|ref|ZP_07003928.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298159629|gb|EFI00673.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 245

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +      +   D++I+D+ L    G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPHEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 239

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +   +L R  +E   Y+  +  +G EALELA ++  D I++DI + E  G+E
Sbjct: 6   RILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSYDCILLDIMMPEKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+E    +  PVI +TA   + +  +  + G + YI KP S    +  +K  +  
Sbjct: 66  VCQAIREK---KATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121


>gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 230

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D +  + L R  +E  G+I  +   G +AL++      D+II+D+ L  I G 
Sbjct: 5   ARILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLMLPVIDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E     + PVI +TA   + D+    + G + Y+ KP S       +K  +  
Sbjct: 65  TVCKKIREK---YDTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRR 121


>gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 239

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D+    +L +   E  G+      +G  ALE   ++ P+V+I+D+ L    G
Sbjct: 1   MKKVLVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I++      +P++ +TA     D+    + G + YISKP      +   K  + 
Sbjct: 61  YEVCREIRK---TSNVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|153829131|ref|ZP_01981798.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
 gi|148875389|gb|EDL73524.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
          Length = 1177

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887


>gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 233

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D     +  R  +  +GY  +   +G++ALE+  +  P+++I+D+ +  + GLE
Sbjct: 2   KVLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVMMPRMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + +   ++ +TA     D       G + Y++KP +L   +  ++  +  +
Sbjct: 62  VCRTLRSQGDDRS--ILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRS 119


>gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219]
 gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219]
          Length = 232

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D +  ++  +  +    +  L   NG EALE+ ++ K D+++MDI +  + G
Sbjct: 1   MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++ TK+I+++   Q IP+I ++A   + D+      G + YI+KP      +  IK  + 
Sbjct: 61  VKATKEIRKN---QNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 234

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++IVED E    L R  +E  G++      G EA     +  PD++++D  +  +SG
Sbjct: 3   SARILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEADLRLHETTPDLVLLDWMVPGLSG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+   E + +PVI +TA   + D  R    G + Y+ KP S+   +  ++  + 
Sbjct: 63  IELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLR 122

Query: 122 EA 123
            A
Sbjct: 123 RA 124


>gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1403

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I +DN       + L+    Y      +G+ AL+      PD+++ D+ +  + G E
Sbjct: 629 RILIADDNADMRDYLKRLLSQQ-YEVEAVVDGLTALKAIHSCHPDLVLTDVMMPGLDGFE 687

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + K ++ D   Q IP+I ++A A +       + G + Y+ KP S    +  ++  +
Sbjct: 688 LLKSLRADLSTQHIPIILLSARAGEESRVEGLEAGADDYLIKPFSARELLARVEATL 744



 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 64/115 (55%), Gaps = 3/115 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+D+E         ++ SG       +  EAL++  +  P+VI+ D+ + ++ G  +
Sbjct: 1279 ILVVDDDEDTRYFLAFALQQSGATVTTVGSASEALQVLVRSAPNVIVSDVGMPDMDGYML 1338

Query: 65   TKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             +QI+        ++I  IA+TA+A + D ++  + G + +I KPI+ S+ ++TI
Sbjct: 1339 IQQIRMLEAQQGREKIKAIALTAYAGEIDRQQALREGFQRHIIKPINPSVLIKTI 1393


>gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis]
          Length = 239

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D E    L +  +E SGY  +   +G EAL+ A   KPD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 60  GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 228

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++ IV+D++  + L +   E  G++  +  +G E L L +   PD+ ++D+ L ++ 
Sbjct: 1   MAKRIAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGLRLIQDKTPDIAVLDVMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI ++++++     IP+I +TA   + D+    + G + Y+ KP S    +  +K  +
Sbjct: 61  GFEICRKLRKEG---NIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 265

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVED      L RD  +  G+  L+  +G EAL +  ++  D+ I+DI + ++ 
Sbjct: 43  MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 102

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+E   +   P+I +TA + + D+    + G + Y++KP S  + +   K  +
Sbjct: 103 GLAVCRNIRE---VSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL 159

Query: 121 GE 122
             
Sbjct: 160 RR 161


>gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 239

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M KK +++V+D    ++L    ++  GY  L+  +  EAL++A  ++ D+ I+DI L  +
Sbjct: 1   MAKKSILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNETDMFIVDIMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ + ++   + ++ PVI ++A + + D+    + G + YI+KP S+   +  I+  
Sbjct: 61  DGFELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAV 120

Query: 120 IGE 122
              
Sbjct: 121 FRR 123


>gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1336

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K++IV+D+ +N+++  + +    Y   Q  NGMEALE+      PD+I++D+ +  ++G 
Sbjct: 872 KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 931

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+T++I+ED    ++P++ +TA     D     + G   Y+SKP++    +  IK +I 
Sbjct: 932 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIR 990


>gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 229

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 61/120 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D    ++L    ++  GY      NG EA+  A++  PD+II+DI + ++ G+
Sbjct: 6   QKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRSLPDLIILDIMMPKMDGI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + ++   E +   ++ +TA + +  E      G + YI+KPI     +  I   +  
Sbjct: 66  EACRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRR 125


>gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 231

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M    ++IV+D     +L R  +E +G+  +Q  +G+ ALE AR   PDV+I+DI L  +
Sbjct: 1   MSTPTILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIMLPVL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + ++++      +  ++ +TA A + D     + G + Y++KP +    +  ++  
Sbjct: 61  DGLAVCRRLR---TFSDAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 229

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D+     L +D +   G+  +   +G EAL +A + +PD+I++D+ + ++ 
Sbjct: 2   MAKTILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGREQPDLILLDVMMPKLD 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  +  ++       PVI +TA   + D+    + G + Y++KP  +   +  ++  +
Sbjct: 62  GFQFMQTFRKR---HNTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|262165983|ref|ZP_06033720.1| putative two-component response regulator [Vibrio mimicus VM223]
 gi|262025699|gb|EEY44367.1| putative two-component response regulator [Vibrio mimicus VM223]
          Length = 236

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN+   +  +D +  +G+  +   NG    +L   H PD+II+DI +    G 
Sbjct: 5   KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIMMPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++ S    +P+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 65  TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 242

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D    + L    ++ + +      NG +AL +   +  D++++D+ L E+SG
Sbjct: 1   MKKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ D    + PVI +TA   + D+    + G + Y+ KP S    +  I   + 
Sbjct: 61  EEVLKRIRMDRN--DTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
 gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
          Length = 229

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 67/120 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVED     ++    +E  G+  L+  NG E L +  +  PDVI++D  +  +SG+E
Sbjct: 7   TVLIVEDELAQREVLAYNLEADGFRVLKAENGEEGLLVVDEQMPDVIVLDWMMPNLSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K  +E + IP+I ++A + + D+ R  + G + Y+ KP S+   +  ++  +  +
Sbjct: 67  VCRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRRS 126


>gi|90409613|ref|ZP_01217630.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
 gi|90328966|gb|EAS45223.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
          Length = 241

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++V+D++   +L  + +  SG+       G E         PD+I+MD+ +    G 
Sbjct: 5   KKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRLASGYPDLILMDVMMPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++     ++P+I +TA + + D+    + G + YI+KP S    M  IK  +  
Sbjct: 65  TLCQYIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121


>gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 246

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    +     +   GY      +G+ ALE+  + +PD++++D+ +  + GLE
Sbjct: 2   RVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++   +  ++PV+ +TA     D       G + Y+ KP +L      ++  I  +
Sbjct: 62  TCRRLRARGD--DVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRS 119


>gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D++   +L R  +E  GY  +   +G EA+      KPD+I++DI L  I G +
Sbjct: 5   RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S    +P+I +TA     D+    + G + YI KP      +  IK     
Sbjct: 65  VCREIRKKS---NVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120


>gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D +L +K  R  +E  G       +G EA+E+AR+ + D++++D+ L +  G
Sbjct: 1   MAKVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVMLPKRDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E     E+P+I +TA     D+    + G + YI+KP ++      IK  + 
Sbjct: 61  FEVCQAIRE---FSEMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
 gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
          Length = 238

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D +   +L +  +E  GYI  +  +G EA+E A     D+I++D+ +  I G+
Sbjct: 5   QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  KQI+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  
Sbjct: 65  EACKQIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D     +  R  +   GY A    +G++AL+ A  + PD+I++DIQ+  + GL
Sbjct: 8   QRILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDIQMPRMDGL 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++  S     P++ +TA    GD       G + Y+ KP  L      ++  +  
Sbjct: 68  TAARRLR--SAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 125

Query: 123 A 123
           +
Sbjct: 126 S 126


>gi|114569827|ref|YP_756507.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
 gi|114340289|gb|ABI65569.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
          Length = 454

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N++L    ++   +      NG +A+ +A+  +PD+I++D+ +  + 
Sbjct: 1   MSARILVVDDQAANVRLLEARLQAEYFEVCTATNGADAIAVAKAEQPDLILLDVMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   +IK+D   + IPV+ VTA   + D  R  + G + +++KPI        I+  +
Sbjct: 61  GYDTCSRIKDDPATRHIPVVMVTALDQREDRIRGLEAGADDFLTKPIDDVSMFARIRSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 28  IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAM 87
             L+T +  EA+ +A ++  D++I+D+      GL +  +I+ D+  +++P++AV   A 
Sbjct: 177 EILETHDPAEAI-IAARNDADLLIVDLTSPGYDGLRLCARIRSDAATRQLPILAVVRPAD 235

Query: 88  KGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
                R    G    I +P+         +  +  
Sbjct: 236 VQQAVRALDLGVNDIIQRPVDAGELAARSRTQLRR 270


>gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
 gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum]
 gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
          Length = 235

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++M+VED E   +L R  +E  GY       G +A    ++H PD+I++D  L  +S
Sbjct: 1   MGARIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 230

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+    +L    +   GY      +G++AL + R  KP ++I+D+ +  I G E
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+ +S    +P++ +TA + + D+    + G + Y+SKP  +   +  ++  +  +
Sbjct: 65  LCRLIRAES---SVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRS 121


>gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
 gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           MLKK++I+ED      L    +  +G+  +   +G +  ELA   KP +I++D+ L  + 
Sbjct: 1   MLKKILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLMLPSMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K +++       P+I +TA   + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GVEVCKSLRQQKV--NTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 230

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  +++V+D    ++L    +   GY  +   +G EA+    +     I++DI + E+ 
Sbjct: 1   MMN-ILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFKFILLDIMMPEMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++I+       +P+I VTA     D  +  K G + YI+KP      +  I+  +
Sbjct: 60  GWETCRKIRS---FSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVL 116

Query: 121 GEA 123
             +
Sbjct: 117 RRS 119


>gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
 gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
          Length = 1129

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 6   MIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +IV +D  +N+++    +   GY      +G + LEL    KP ++++DI +  +SG ++
Sbjct: 725 LIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSGYQV 784

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             Q+++  ++ E+P+I +TA +   D  R  + G   Y++KP +       IK ++
Sbjct: 785 CHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHL 840


>gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
 gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
          Length = 239

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 11  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 71  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130

Query: 121 GE 122
             
Sbjct: 131 RR 132


>gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  K+++V+D     ++    +    Y  +   +G+EAL+      PD++++D+ + E
Sbjct: 1   MSKTTKILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEHPDLLVLDLMMPE 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E+ K ++   +    PVI +TA     D+      G + Y++KP S S     +K 
Sbjct: 61  MDGFEVCKAMRNRGD--NTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKA 118

Query: 119 YIGE 122
            +  
Sbjct: 119 VLRR 122


>gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 230

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E   ++ R  +E  G+   +  +G++ALEL       +II+D+ L  +SG
Sbjct: 1   MDRILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPHMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++       IP+I +TA   + +  R    G + YI KP S    +  +   + 
Sbjct: 61  EDVCKQLRRQGN--NIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides
            DG6]
 gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides
            DG6]
          Length = 1010

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 75/118 (63%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VEDN +N+    D + + GY      NG EAL+   Q +P++I+MDIQ+  + G+
Sbjct: 892  RRILLVEDNTVNILTISDYLHSRGYTVAVANNGQEALDSIEQAQPELILMDIQMPVMDGI 951

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T++++      EIP+IA+TA AM GD ER    G  AY++KPISL   ++ I++ +
Sbjct: 952  EATRRLRAMPAYSEIPIIALTALAMPGDRERCLAAGANAYLTKPISLRHLVQMIEEMV 1009


>gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 231

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 66/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + ++ED+E   +L     +  G+      NG  A E  +Q KPD++++D+ + E+ G
Sbjct: 1   MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  K ++ D EL+ IP+I +TA + + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 229

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I+ED E   ++ +  ++  GY A+    G + L   R+ + D+I++DI L E+S
Sbjct: 1   MSNRILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPEMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K+I+      + PVI +TA +   D+ +    G   Y++KP  +   +  I+  +
Sbjct: 61  GIDVLKRIRATE--SKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|15640642|ref|NP_230271.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587963|ref|ZP_01677717.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|121728271|ref|ZP_01681303.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|147675649|ref|YP_001216115.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|153818929|ref|ZP_01971596.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|153822991|ref|ZP_01975658.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|227080803|ref|YP_002809354.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|254850855|ref|ZP_05240205.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|298500739|ref|ZP_07010542.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
 gi|9655056|gb|AAF93788.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121547810|gb|EAX57898.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|121629465|gb|EAX61892.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|126510546|gb|EAZ73140.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|126519498|gb|EAZ76721.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|146317532|gb|ABQ22071.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|227008691|gb|ACP04903.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|227012447|gb|ACP08657.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|254846560|gb|EET24974.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|297540520|gb|EFH76578.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
          Length = 1177

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887


>gi|254226732|ref|ZP_04920308.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
 gi|125620749|gb|EAZ49107.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
          Length = 1177

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887


>gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 232

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D +L +K  R  +E  GY      +G EA+E A++ + DV+++D+ L    G
Sbjct: 1   MARVLVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVMLPGHDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E     E+P+I +TA     D+    + G + YI+KP ++      IK  I 
Sbjct: 61  FEVCQTIRE---FSEMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|153801748|ref|ZP_01956334.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|153825707|ref|ZP_01978374.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|254291241|ref|ZP_04962036.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
 gi|124122713|gb|EAY41456.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|149740644|gb|EDM54753.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|150422805|gb|EDN14757.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
          Length = 1177

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887


>gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
          Length = 248

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 17  MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 76

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 77  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 133

Query: 120 IGE 122
           +  
Sbjct: 134 LRR 136


>gi|260771832|ref|ZP_05880750.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
 gi|260613124|gb|EEX38325.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
          Length = 1139

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 60/115 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I +D  +N+++    +   GY      +G E +E   + KP+++++D+ +  +SG ++ 
Sbjct: 735 LIADDEPVNLRVLDSFLRLEGYRVRTALDGHEVIEAIAKEKPELLLLDVMMPGMSGYQVC 794

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +Q++E  +  ++P+I +TA     D  R    G   Y+SKP +       IK ++
Sbjct: 795 EQLREQYDHAQLPIIMLTALTQSDDRIRGFAAGANDYLSKPFNKQELAARIKAHL 849


>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 1191

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 65/115 (56%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED+ +N KL   L++  G+      NG  AL++  +   D+I+MD+ +  + GLE 
Sbjct: 937  ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPYDLILMDMMMPVMDGLEA 996

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I+ +   + IP+IA+TA AM+ D     + G + YI+KPI      + I + 
Sbjct: 997  TRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKILQL 1051



 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-------KPDVIIMDIQL 56
            +++V+DN +N ++   ++ + G    Q  +G  AL+   Q          D++++D Q+
Sbjct: 789 HILVVDDNLVNREVVCGMLHSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLLDGQM 848

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            E+ G      ++       +P++ +++  MKGD +R R+ G   Y+SKPI+    ++ +
Sbjct: 849 PEMDGFSTAPLVRGLPNCSSLPMVLLSSAGMKGDGQRSRQVGIAGYLSKPIARQDLLQMV 908

Query: 117 KKYI 120
              +
Sbjct: 909 SGVL 912


>gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 239

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 8   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 67

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 68  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 124

Query: 120 IGE 122
           +  
Sbjct: 125 LRR 127


>gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 225

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IV+D E    L    +E + +  L+  NG EAL++ + +K DVI++D+ + ++ G 
Sbjct: 4   KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  +I+E S   ++P++ +TA   + D+ +  K G + YI KP S    +  I+  +  
Sbjct: 64  TLCARIREQS---DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120

Query: 123 A 123
           A
Sbjct: 121 A 121


>gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio
           vulnificus CMCP6]
 gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus CMCP6]
          Length = 1129

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 6   MIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +IV +D  +N+++    +   GY      +G + LEL    KP ++++DI +  +SG ++
Sbjct: 725 LIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSGYQV 784

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             Q+++  ++ E+P+I +TA +   D  R  + G   Y++KP +       IK ++
Sbjct: 785 CHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHL 840


>gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 236

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D    + L +D +E  GY  +   +G+ A   A   KPD+I++D  L  ++
Sbjct: 1   MDQKILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDKPDLILLDCMLPRMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K+I++ S    +P+I +TA + + D+    + G + YI+KP S+   +  +K  +
Sbjct: 61  GVDVCKKIRQSS---SVPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
 gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
          Length = 238

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++IV+D+E   +L    +    Y      +G  ALE   +  P++I++D+ L  +
Sbjct: 1   MDKEKILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFVEFAPNLILLDVMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++  +I++ S    +P+I ++A     D+    K G + YI KP   +  +  +   
Sbjct: 61  DGYQVCTEIRKQS---NVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
 gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
          Length = 239

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 11  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 71  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130

Query: 121 GE 122
             
Sbjct: 131 RR 132


>gi|296162067|ref|ZP_06844865.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295887688|gb|EFG67508.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1648

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 61/114 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+DN    +    ++  +G+      +G  ALE ARQ +PD+++ D+ +  + G 
Sbjct: 660 ARLLVVDDNADLREYMSRILRAAGHDVRLATDGQAALEAARQERPDLVLSDVMMPRLDGF 719

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + + ++ D EL++ PV+ ++A A +       + G + Y++KP S    +  +
Sbjct: 720 GLLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 773



 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61
             V++VED+E       +++   GY  L+ ++   AL +     P DV+  D+ +   +  
Sbjct: 1378 TVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLRS 1437

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMETIKKYI 120
             E+ ++ +E   L  I V+  + +             G    +SKP +       I+  +
Sbjct: 1438 TELARKARE--RLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKIRYVL 1494



 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VED+EL      +L+    +  L+     +A ++  +H   V++ D+ L   SG++
Sbjct: 1533 RILLVEDDELIRASTAELLRMFDFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1592

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  ++       ++ VI +T + +     + +       + KP  L   ++ +K  + 
Sbjct: 1593 LALEVCA--VRPDLRVIFLTGYDLVLTPAQRKVLPHAILLRKPYDLLDLIDALKTPLR 1648


>gi|330873059|gb|EGH07208.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 245

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G E      +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAEFRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K +++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|309791478|ref|ZP_07685982.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308226475|gb|EFO80199.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 407

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D  LN+K+    + + GY       G  AL+ A   +PD+ I+D+ + +I G E
Sbjct: 7   RILIVDDTPLNLKMVSAALASGGYQIETATTGHMALDRAVTFRPDLFILDVMMPDIDGYE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +   + P++ +TA     +  R  + G + Y+SKP         +K  +  
Sbjct: 67  VCRRLRRMTTFAQHPILMLTANDTLEERVRGLEAGADDYMSKPFQPIELQARVKALLRR 125


>gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++I +D    +KL  D ++  G+      NG +AL++  + + D++I+D+ + E  G 
Sbjct: 5   KKILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIFNEQQLDLVILDVMMPEYDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++      +P+I +TA A + DE    + G + Y++KP S  I +  ++  +  
Sbjct: 65  AVCREIRK---TSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRR 121


>gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718]
 gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding [Nitrosomonas
           europaea ATCC 19718]
          Length = 240

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED     +L    +  +GY A+ T +  +A  +  +  PD++++D  L   S
Sbjct: 1   MSATVLVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + ++ D   + IPVI +TA   + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GIELARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|254227379|ref|ZP_04920811.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262396356|ref|YP_003288209.1| putative two-component response regulator [Vibrio sp. Ex25]
 gi|151939991|gb|EDN58817.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262339950|gb|ACY53744.1| putative two-component response regulator [Vibrio sp. Ex25]
          Length = 235

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN    +   D +  +G+  L   NG    +L   H PD+II+DI +    G 
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIMMPGEDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++++S   ++P+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 64  TLCQKLRKNS---DVPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  +  +   GY      +G +AL +A  + PD+I++DIQ+  + GL
Sbjct: 9   QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+        P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 69  TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126

Query: 123 A 123
           +
Sbjct: 127 S 127


>gi|220906185|ref|YP_002481496.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219862796|gb|ACL43135.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 123

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 74/122 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE+N  +    +   GY      +G + +ELA    PD+I+MD+ L  I G
Sbjct: 1   MPKILLVEDNEMNRDMLSRRLTRKGYDVTIAVDGQQGVELAHTQTPDLILMDMSLPVIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+Q+K  S+ Q IPVIA+TA AM GD E+  + GC+ Y +KPI L   +  I+  +G
Sbjct: 61  WEATRQLKASSQTQAIPVIALTAHAMSGDREKALEAGCDDYDTKPIDLPQLLSKIEALLG 120

Query: 122 EA 123
           ++
Sbjct: 121 KS 122


>gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e]
 gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           Finland 1988]
 gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           R2-561]
 gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           10403S]
 gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           J0161]
 gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818]
 gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900]
 gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J2-003]
 gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e]
 gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900]
 gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818]
 gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 238

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  +E   Y   +  +G +AL +A  +  +VI++D+ +    G+E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 296

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  I G
Sbjct: 63  MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 122

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 123 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 179

Query: 122 E 122
            
Sbjct: 180 R 180


>gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei
           87.22]
 gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces
           scabiei 87.22]
          Length = 244

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D        R  +   GY      +G +ALE A  ++PD++I+D+Q+  + GL
Sbjct: 11  QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDVQMPRMDGL 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+   +    P++ +TA    GD       G + Y+ KP  L      ++  +  
Sbjct: 71  TAARRIRGAGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 237

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++V+D +    L    +   GY  +Q  +G EAL    +   D++++D+ L ++ G
Sbjct: 5   STRILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVMLPQLDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++  S    +P+I +TA + + D+    + G + YI+KP S+  F   +K  + 
Sbjct: 65  LEVCRRLRSRS---SVPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALR 121

Query: 122 EA 123
            +
Sbjct: 122 RS 123


>gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
 gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
          Length = 234

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              ++IVED E    L R  +E  G+       G EA     +  PD++++D  +  +SG
Sbjct: 3   SAHILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+   E + +PVI +TA   + D  R    G + Y+ KP S+   +  ++  + 
Sbjct: 63  IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 122

Query: 122 EA 123
            A
Sbjct: 123 RA 124


>gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
          Length = 227

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   +++  GY  +   +G  AL   ++H PD++++D+ L  + 
Sbjct: 1   MSSRILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I+    + + P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GFDVCRAIR---RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|289678167|ref|ZP_06499057.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 195

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +          D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 223

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I+ED+    +L    ++  G+      +G E L  A+ +  D+II+D+ L +++
Sbjct: 1   MKEKILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLMLPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I+E     E+P+I +TA     D+      G + Y++KP S    +  IK  I
Sbjct: 61  GIEVCKRIRE---FSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
 gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
          Length = 229

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 66/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E  G+  ++  NG EA+ L  +  PD+I++D  +  +SG+E+
Sbjct: 8   VLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDIIVLDWMMPNLSGIEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++K   E + IPVI ++A + + D+ R  + G + Y+ KP S+   M  ++  +  
Sbjct: 68  CRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRR 125


>gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED++   ++ R  +  +GY  L+  +G   L  A +H PD +++D+ L  + GL+
Sbjct: 6   RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLMLPGMDGLQ 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++      ++P++ +TA   + D  R  + G + Y+ KP S    +  I   +  +
Sbjct: 66  VCRELRA--RRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRRS 123


>gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 233

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  +E+ GY       G +A    ++  PD++++D  L  +S
Sbjct: 1   MGARILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  S+ +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + MEAL+L  + + D+II+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + IP+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIRED---RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|146341429|ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ORS278]
 gi|146194235|emb|CAL78257.1| response regulator PleD (with diguanylate cyclase and response
           regulator receiver domains) [Bradyrhizobium sp. ORS278]
          Length = 473

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  L   NG EAL++ ++ + D+I++D+ + ++ 
Sbjct: 1   MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAECDIILLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPV+ VTA     D  R  + G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 90.2 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    ++ T  +      +  EA+  A     D++I+ + L +  GL 
Sbjct: 157 RILLVDDRPSSYERLGPMLATE-HSVDVEPHPAEAVFNAADGNYDLVIVSLDLDDFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +P++A+ A A       R  + G   Y+ +P+  +  +   +  I +
Sbjct: 216 LCSQLRSLERTRHVPILAI-AEAENNSRLLRGLEIGVNDYLLRPVDKNELLARARTQIRK 274


>gi|153825200|ref|ZP_01977867.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2]
 gi|149741179|gb|EDM55230.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2]
          Length = 236

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN+   +  +D +   G+  +   NG         H PD+II+DI +    G 
Sbjct: 5   KQILVVDDNQELREALKDYLGKVGFEVICAENGSAMWNRLENHHPDLIILDIMMPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++ S    +P+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 65  TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 243

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D     +  +  +   GY      +G++AL  A  ++PD++++DIQ+  + GL 
Sbjct: 9   RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++       +PV+ +TA    GD       G + Y+ KP  L      I+  +  +
Sbjct: 69  AARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 126


>gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 224

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+    +L R +++  G+   +  +G+EAL      K D+ I+D+ +  + G
Sbjct: 1   MNKILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKADLAIIDLMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPV+ +TA      + +  + G + Y+ KP      M  +K  + 
Sbjct: 61  FELCQELRAS---YDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
 gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
          Length = 237

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  Q+  +++I+D+ + ++
Sbjct: 1   MKDIRILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNYNLVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   IP++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 229

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++VED+   ++L    +E++G+      +G   LELA + KPD++++D+ L  +
Sbjct: 1   MAKDRLLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREKPDLVVLDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGL++ K +K   E QE PVI +TA   + D     + G + Y+ KP S    +  IK  
Sbjct: 61  SGLDVCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LKR 123


>gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 230

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D +  + + +  +E  GY    + +G +AL   +    D++++D+ L +I
Sbjct: 1   MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+++E     ++P+I +TA A + D+    + G + YI+KP  +   +  I+  
Sbjct: 61  DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 246

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 66/121 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++++ED++    L    +E +GY   Q  +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ ++A     D+      G + Y++KP  L+  +  ++  + 
Sbjct: 61  FTVCQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
          Length = 233

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 227

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I +D +   ++ +  +E  G+  + T +G  AL    +  PD+II+D+ L EIS
Sbjct: 1   MSKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+++S    +P+I +TA     D+    + G + Y++KP      +  +K  +
Sbjct: 61  GWDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 232

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D +  ++L +  +   GY   +  +G+ ALE+ + +K D++I+DI + +  G
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ + + + +PVI ++A + + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 61  YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB
           [Thiomonas sp. 3As]
          Length = 244

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L    ++ +G+  ++  +  EAL + R   PDV+++D  L  +SG+ +
Sbjct: 7   ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++ D+  + IP+I +TA + +GD+ +    G + YI+KP S    +  I+  +  
Sbjct: 67  ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124


>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 230

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    +  R  +  +GY     ++G+EAL+L   ++PD +++D+ +  + 
Sbjct: 1   MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +
Sbjct: 61  GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 266

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   +++    +  +G+I     +G  AL+ A +  PD+I++D  L  I G 
Sbjct: 40  RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+      ++P+I +TA     +     + G + YISKP S    +  ++  +  
Sbjct: 100 EVCRRIRSRG---DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRR 156

Query: 123 A 123
           +
Sbjct: 157 S 157


>gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes
           Clip81459]
 gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J2-064]
 gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J1-175]
 gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes
           1816]
 gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes
           220]
 gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes
           str. Scott A]
          Length = 238

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  +E   Y   +  +G +AL +A  +  +VI++D+ +    G+E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|88807104|ref|ZP_01122616.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788318|gb|EAR19473.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 265

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +L    +E SG+      +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQSAEDGIKGQALALQYSPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L      IK  +  +
Sbjct: 65  CQRLRRDERTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123


>gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
 gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
          Length = 229

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D  L +K  +  +           +G EALE+A++ + D++++D+ L ++ 
Sbjct: 1   MGKKVLVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+E      +P+I +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQRIRE---FSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|86608608|ref|YP_477370.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557150|gb|ABD02107.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 339

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 69/119 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D   +  L  DL+++ GY   +  +G +AL++ +  +PD+I++D+ +  + G E
Sbjct: 23  HLLIVDDQPNSRLLLGDLLQSIGYRVSEAESGNQALQMLKTFQPDLILLDVMMPGLDGFE 82

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++IK + E + IPV+ VTA +   +  R  + G + ++SKP   S  +  ++  + +
Sbjct: 83  VCRRIKANDETRLIPVVLVTAASDHKNRVRGIEAGADDFLSKPFDESELLARVRSLVRQ 141


>gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13]
          Length = 239

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +   +L +  +E   Y+  +  NG  ALE+A + + DVI++D+ +  + G+E
Sbjct: 6   RILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVMMPGMDGME 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  
Sbjct: 66  VCKEIREK---KATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRR 121


>gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
          Length = 233

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
 gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
          Length = 229

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I+ED E   ++ +  ++  GY A+    G + L   R+ + D+I++DI L E+S
Sbjct: 1   MSNRILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPEMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K+I+      + PVI +TA +   D+ +    G   Y++KP  +   +  I+  +
Sbjct: 61  GIDVLKRIRATE--SQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1]
 gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1]
          Length = 1044

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 68/119 (57%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K++++V+DNE+N K+    +   GY A    NG EAL+   +    +I+MD Q+  + G
Sbjct: 918  SKRLLVVDDNEVNRKVACGFLRKLGYEADTAENGQEALDAVLEKDYGLILMDCQMPVMDG 977

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T+QIK   + + +P+IAVTA AM+GD ++    G + Y +KPI      E +  ++
Sbjct: 978  YEATRQIKALPKGKYLPIIAVTANAMEGDRDKCLAAGMDDYTTKPIRREKLQELLNHWL 1036


>gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K+++VED     K+    +  +GY      +G++AL+L  +H+PDV+++D  L  ++G
Sbjct: 10  MEKILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERHQPDVVLLDWMLPRLNG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++ S     PV+ +TA + + D     + G + Y++KP S+   +  ++  + 
Sbjct: 70  LEVLRRLRQSSAT---PVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALLR 126

Query: 122 EA 123
            A
Sbjct: 127 RA 128


>gi|316933637|ref|YP_004108619.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris DX-1]
 gi|315601351|gb|ADU43886.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris DX-1]
          Length = 457

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 69/121 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL  D +    +  +   NG+EALE+ ++ + D++++D+ + ++ 
Sbjct: 1   MSARILVVDDIPANVKLLEDRLSAEYFDVITASNGVEALEICQRAECDIVLLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K + +   IPV+ VTA     D  R  + G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    L+    +      N  EAL  A +   D++I+ + L+   GL 
Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++A+ A A       R  + G   Y+ +P+  +  M 
Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELMA 266


>gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 223

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++IV+D E    + R  +   GY   +  +G + L+L  +   D++I+D+ L +  G
Sbjct: 6   MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I ++IK+     E PVI +TA     DE    + G + YI+KP +  + +  +K  + 
Sbjct: 66  WSILREIKK---YTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLR 122

Query: 122 E 122
           +
Sbjct: 123 K 123


>gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii
           DJ]
 gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii
           DJ]
          Length = 229

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     ++    +E +GY  L+  N  +A  +    +PD+I++D  L   SG+
Sbjct: 4   KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D     IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123


>gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  KV+IV+D     +L    +E   +  +   NG++A+ELA++  PD+I++DI +  I
Sbjct: 1   MKTGKVLIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKELPDIILLDIMIPGI 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ ++I+ D   ++IP+I +T    + D+ R  K G + YI+KP  ++  +  I   
Sbjct: 60  DGFEVCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAV 119

Query: 120 IGEA 123
           +  +
Sbjct: 120 LRRS 123


>gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
 gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
          Length = 232

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
 gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
          Length = 238

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  +E   Y   +  +G +AL +A  +  +VI++D+ +    G+E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 218

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+    +  D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D +L +K  R  +E  G       +G EA+ELA++ + D++++D+ L ++ G
Sbjct: 1   MPRVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E     ++P+I +TA     D+    + G + YISKP ++      IK  I 
Sbjct: 61  YEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 233

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++V+D+    ++    IE + Y  +   NG EA+   +Q   D+II+DI + E+ G
Sbjct: 1   MQNILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPVDLIILDIGMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I++ SE   +P++ ++A   + D     + G + Y++KP S    +  I   + 
Sbjct: 61  FEVCREIRKHSE---VPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAILK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 238

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  +E   Y   +  +G +AL +A  +  +VI++D+ +    G+E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
 gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
          Length = 234

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D    + L    +E  GY  +   +G +A ELA     D II+D+ L  + G
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVMLPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EITK+++++    E P++ +TA     D     + G + Y++KP S    +  +K    
Sbjct: 61  IEITKKLRQEKI--ETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED           ++ +G+      +G  A+  A    PD++I+DI L  I G
Sbjct: 1   MARILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADPPDLVILDIMLPTIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + I+  S    +P++ +TA   + D     + G + Y++KP S+   M  +K  + 
Sbjct: 61  FDVCRHIRRSS---SVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229512884|ref|ZP_04402351.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TMA 21]
 gi|229350133|gb|EEO15086.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TMA 21]
          Length = 1129

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 725 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 784

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 785 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 839


>gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 238

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y      NG EAL L  Q+  +++I+D+ + +I
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
 gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
          Length = 232

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+++      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 251

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+    +L    +E   +      +G EAL +  +++PD+II+D+ L  I G 
Sbjct: 5   QRILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVPEYRPDLIILDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++  S    +PVI ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  EVCRRLRMRS---SVPVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 233

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + ++AL+L  + + D+II+DI +  + 
Sbjct: 6   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMD 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 66  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 232

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1]
 gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1]
 gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 239

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
 gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
          Length = 257

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D+     L +  +E  GYI     +G +  +L ++    +I++D+ L    
Sbjct: 21  MNQRILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQMDKLMQRELFSLIVLDLMLPNED 80

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ I  +++ ++   +IP+I +TA     D     + G + Y+ KP +    +  IK  +
Sbjct: 81  GISICHRLRAEN--SDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVL 138

Query: 121 GE 122
             
Sbjct: 139 RR 140


>gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
 gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
          Length = 239

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  L+  +   A+    +  PD++++D  L   S
Sbjct: 11  MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 71  GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130

Query: 121 GE 122
             
Sbjct: 131 RR 132


>gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 237

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 59/117 (50%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED+    +L R ++    +      +G + LE+A     ++II+D+ L  + G EI 
Sbjct: 9   LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +++++ +  +  P+I +TA   + D+    + G + Y++KP     F+  +   +  
Sbjct: 69  RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRR 125


>gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 232

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055]
 gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger
           B]
 gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Vollum]
 gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Australia 94]
 gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 239

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 253

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALE  R+  PD++++D+ + ++ G  
Sbjct: 15  TILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTDPDLVVLDVMMPKLDGYG 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 75  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130


>gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 232

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D +    L    +E  GY  ++  +G EAL++ +  +  +II+DI +  +
Sbjct: 1   MSKETILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQQVHLIILDIMMPNM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E   +I+E    + +P+I ++A     D+      G + YI+KP +    +  +K  
Sbjct: 61  DGIEACIKIREH---KNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|154253256|ref|YP_001414080.1| response regulator receiver modulated diguanylate cyclase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157206|gb|ABS64423.1| response regulator receiver modulated diguanylate cyclase
           [Parvibaculum lavamentivorans DS-1]
          Length = 457

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D   N+KL    +    +   +  +G EALE A++ +PD+I++D+ +  + 
Sbjct: 1   MTARVLIVDDVPANLKLLDAKLTAEYFDVFKAASGPEALEAAKEQQPDIILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K   E + IPV+ VTA     D  +  + G + +++KP++       ++  +
Sbjct: 61  GFEVCRRLKAMPETEHIPVVMVTALDQPKDRVQGLEAGADDFLTKPLNDLALFARVRSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ ++D   ++K   + + +  +         E L+LA     D+ I+ + LQE  GL 
Sbjct: 157 RILAIDDRPTSLKRITETLASE-HNVTVAETQEELLQLANSGNFDLHIVSLTLQEFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     ++ P++A+      G   R    G   Y+ +P+  +  +   +  +  
Sbjct: 216 LCSQLRSLEATRQTPILAIVEEGDTGRLVRALDMGVNDYLVRPVERNELVARARSQLRR 274


>gi|309790461|ref|ZP_07685022.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227509|gb|EFO81176.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 226

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D+    +L R  +E  GY  +Q  +G++ LEL R  +PD++I+D+ + E+ G+
Sbjct: 4   RTILVVDDDNGLRELIRINLEHEGYTVIQAADGLQCLELVRDQRPDLVILDVMMPEMDGV 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E   +++E      +PV+ +TA     D  +    G + Y+ KP +++     I+  +  
Sbjct: 64  EACTKLRE---FSLLPVLMLTAKVQSEDVIQGLDCGADDYLLKPFNMNELSARIRALLRR 120


>gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 238

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   +L +  +E  GY   +  +G  AL+LA  +   +I++D+ L  I G+E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDYGLILLDVMLPGIDGVE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++   ++  PV+ +TA   + +  +  + G + Y+ KP S    +  +K  +  A
Sbjct: 67  VCNRLRQ---VKATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMRRA 123


>gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 218

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+    +  D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115


>gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 244

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++V+D+    ++    +E +G+   +  +G +AL LA   +PD++++D+ L  + G
Sbjct: 12  MQSILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLAAGRRPDLVVLDLMLPGMDG 71

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++++   E   +PVI +TA   + D     + G + Y++KP S    +  ++  +
Sbjct: 72  LEVCRRLRA-GEQARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVL 129


>gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 237

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  Q+  +++I+D+ + ++
Sbjct: 1   MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   IP++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 230

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D +  + + +  +E  GY    + +G +AL   +    D++++D+ L +I
Sbjct: 1   MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENYDMVLLDVMLPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+++E     ++P+I +TA A + D+    + G + YI+KP  +   +  ++  
Sbjct: 61  DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|309792204|ref|ZP_07686676.1| diguanylate cyclase [Oscillochloris trichoides DG6]
 gi|308225745|gb|EFO79501.1| diguanylate cyclase [Oscillochloris trichoides DG6]
          Length = 647

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I +D+     L R+ ++  GY      NG E + +A+   PD++++D+ +  + G E
Sbjct: 30  RILIADDDPALCLLLRETLQDVGYEVRIASNGDELVRMAQDQPPDLLLVDLMMPLMDGFE 89

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +Q++ D+    +P+I +TA +   D       G + YI KP  + + +  I+ ++  A
Sbjct: 90  AIRQLRNDTRTAHLPMIILTARSTSSDVVTGFDSGADDYIIKPYDVDVLLARIRSHLRRA 149


>gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D    +K+    ++ +GY   Q  NG EALE   +  PD+I++D+ L ++
Sbjct: 1   MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+ +S    +P+I +TA     +       G + Y+SKP S       I   
Sbjct: 61  DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262]
 gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262]
 gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL
           J1-023]
          Length = 238

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  +E   Y   +  +G +AL +A  +  +VI++D+ +    G+E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 245

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+   ++L    +E +GY   Q  +G++   LA Q  PD+I++D+ L ++ G
Sbjct: 1   MPRILVIDDDPAIVELVSINLEMAGYDTTQANDGIKGQALAVQLVPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ +TA     ++      G + Y++KP  L   +  ++  + 
Sbjct: 61  FTVCQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 228

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D +L +K  +  +E          +G EAL LA++++ D+I++D+ L +++G
Sbjct: 1   MKKVLVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVMLPKLTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E      +P+I +TA     D+    + G + Y++KP ++      IK  + 
Sbjct: 61  YEVCQAIRE---FSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 227

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    +++    +   GY      NG+E ++ A++ KP +II+D+ + E+ G+E
Sbjct: 7   KILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEKPHLIILDVMMPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +QI++  EL+   +  +TA      +      G + YI+KPI   + +  +K  +  
Sbjct: 67  ACEQIRKVPELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALLRR 125


>gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 269

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVED      L RD  +  G+  L+  +G EAL +  ++  D+ I+DI + ++ 
Sbjct: 47  MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 106

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+E   +   P+I +TA + + D+    + G + Y++KP S  + +   K  +
Sbjct: 107 GLAVCRNIRE---VSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL 163

Query: 121 GE 122
             
Sbjct: 164 RR 165


>gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 232

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D +  ++L +  +   GY   +  +G+ ALE+ + +K D++I+DI + +  G
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ + + + +PVI ++A + + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 61  YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I+ED E  + L    ++ +GY+ +  R+G + L L  +  PD++++DI L  I 
Sbjct: 1   MAQKILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPAID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+      + P++ +TA + + D     + G + Y+ KP S    +  ++  +
Sbjct: 61  GFEVCRRIRA---WSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229505755|ref|ZP_04395265.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae BX 330286]
 gi|229509211|ref|ZP_04398696.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae B33]
 gi|229519579|ref|ZP_04409022.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC9]
 gi|229520913|ref|ZP_04410335.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TM 11079-80]
 gi|229608866|ref|YP_002879514.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae MJ-1236]
 gi|255744160|ref|ZP_05418113.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholera CIRS 101]
 gi|262155734|ref|ZP_06028858.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae INDRE 91/1]
 gi|262169924|ref|ZP_06037614.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC27]
 gi|229342146|gb|EEO07142.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TM 11079-80]
 gi|229344268|gb|EEO09243.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC9]
 gi|229353783|gb|EEO18719.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae B33]
 gi|229357978|gb|EEO22895.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae BX 330286]
 gi|229371521|gb|ACQ61944.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae MJ-1236]
 gi|255738100|gb|EET93492.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholera CIRS 101]
 gi|262021658|gb|EEY40369.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC27]
 gi|262030445|gb|EEY49085.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae INDRE 91/1]
          Length = 1129

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 725 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 784

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 785 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 839


>gi|330895752|gb|EGH28041.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 187

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +          D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 246

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 66/121 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++++ED++    L    +E +GY   Q  +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ ++A     D+      G + Y++KP  L+  +  ++  + 
Sbjct: 61  FTVCQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED     +  R  +E  GY  +   +G++ L+ AR+ +PD++++DI L  + G
Sbjct: 1   MATVLIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIMLPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++++S   ++P+I +TA   + D     + G + Y+ KP SL  F+  ++  + 
Sbjct: 61  FSVCRILRQES---DVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
 gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
          Length = 1389

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 61/117 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +V++ +DN    +    L+  +GY   +  +G+EAL  AR+  PD+++ D+ +  + G
Sbjct: 639 SARVLVADDNADMREYLARLLTAAGYQVTEVTDGVEALAAARRRTPDLVVSDVMMPRLDG 698

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           LE+  +++ D     +PV+ ++A A +       + G + Y+ KP + +  +  ++ 
Sbjct: 699 LELVSRLRADPRTASVPVVLLSARAGQEASIEGLRAGADDYLVKPFAAAELLARVRA 755


>gi|288958709|ref|YP_003449050.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911017|dbj|BAI72506.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 464

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    +    +  L   NG +ALE+ R   PD++++D+ +  + 
Sbjct: 1   MSARVLVVDDVLPNVKLLAAKLTREYFNVLTASNGPDALEMVRTESPDIVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+ D     IPV+ VTA +   D  R  + G + +++KP++       ++  +
Sbjct: 61  GFEVCEKIRSDPATMHIPVVMVTALSDIADRVRGLEAGADDFLTKPVNDIALFARVRSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 99.0 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 53/118 (44%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED+ L+++   + ++      +      +ALE A     D++++ + L    GL +
Sbjct: 158 VLVLEDSVLDLEKVTETLQRDHNTVMSADTCAKALERALGGSLDLVVVSLTLLNEDGLRL 217

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     +++P++ +      G   +  + G   Y+ KP+  +  +   +  I  
Sbjct: 218 CSQLRSHERTRQVPILLMVDDGDLGQVAKGLELGANDYVVKPVDRNELLARARTQIRR 275


>gi|229530428|ref|ZP_04419816.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae 12129(1)]
 gi|229332201|gb|EEN97689.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae 12129(1)]
 gi|327483425|gb|AEA77832.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae LMA3894-4]
          Length = 1129

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 725 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 784

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 785 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 839


>gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    +  R  +  +GY     ++G EAL+L    +PD +++D+ +  + 
Sbjct: 1   MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +
Sbjct: 61  GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|323492021|ref|ZP_08097186.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
 gi|323313750|gb|EGA66849.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
          Length = 1128

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 60/115 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D  +N+++    +   GY     ++G EALE   + KP+++++DI +  +SG ++ 
Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALEAVEKEKPELLLLDIMMPGMSGYQVC 784

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++  +   +PVI +TA     D  R    G   Y+SKP +       I  ++
Sbjct: 785 ETLRKSYDHAALPVIMLTALNQTDDRIRGFNAGANDYLSKPFNKQELAARIIAHL 839


>gi|218439941|ref|YP_002378270.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
 gi|218172669|gb|ACK71402.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
          Length = 124

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 72/122 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++KV++VED++   ++   L+  +G+      +G+EALE  +Q  PD++++DI +  ++
Sbjct: 1   MMRKVLLVEDSQAQREMISTLLRENGWNVSIACDGVEALEFVQQSSPDLVVLDIVMPRMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D +   +PV+  ++   + D     K G +AYI+KP      + TIK+ +
Sbjct: 61  GYEVCRRLKSDPKTMNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPIELIGTIKQLL 120

Query: 121 GE 122
            +
Sbjct: 121 RK 122


>gi|119488886|ref|ZP_01621848.1| sensory box histidine kinase [Lyngbya sp. PCC 8106]
 gi|119455047|gb|EAW36189.1| sensory box histidine kinase [Lyngbya sp. PCC 8106]
          Length = 401

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 68/116 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D E N+ L   ++   GY      NG+ AL LA Q++PD+I++DI + +I+G E+
Sbjct: 8   ILIVDDIEDNLLLLTAILTEKGYQVQSAVNGLSALSLAVQNRPDLILLDIMMPDINGYEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K D   ++IP+I ++A     D+ +    G   Y++KPI +   +  +K ++
Sbjct: 68  CHRLKADPRTKDIPIIFISALGEVFDQVKAFSIGAVDYLTKPIRIPELLSRVKTHL 123


>gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis]
          Length = 238

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V I +D +    L +  ++   Y      +G +AL L  Q+   ++I+D+ + +I G+E
Sbjct: 5   RVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    +P++ +TA  ++GD+      G + YI+KP S++  +  IK  +  
Sbjct: 65  VCRRMRNHT---NVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120


>gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 233

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED+     L ++ +   GY       G EAL+      PD++++D+ L  + 
Sbjct: 1   MSARILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++       + V+ +TA + + D     + G + Y++KP SL+  +  ++  +
Sbjct: 61  GLEVCRRLRA--RHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 241

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D +   +L +  +E   +   +  +G EA ELA  H    I++D+ L E+ 
Sbjct: 1   MSKEILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
 gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +      R  +  +GY      +G +AL++  + +PD++I+D+ + ++ GLE
Sbjct: 2   KIVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMPKMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + +  P++ +TA     D       G + Y+ KP +L   +  ++  +  A
Sbjct: 62  VCRHLRSHGDDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119


>gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 226

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D +   +    ++   GY      NG   LELA+++  D++I+D  L + SGL+
Sbjct: 2   KILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQSGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I + ++   +    PV+ +TA     D       G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQYLRNQGDT--TPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRS 119


>gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 69/123 (56%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + +V++VED+    +L    +E   +   +T +G EA+ LAR+  PD++++D  ++ +
Sbjct: 1   MARARVLLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMIEGV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ ++++  ++   +P+I +TA   + D  R  + G + Y++KP S    +  +   
Sbjct: 61  SGIEVCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 244

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L    ++ +G+  ++  +  EAL + R   PDV+++D  L  +SG+ +
Sbjct: 7   ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++ D+  + IP+I +TA + +GD+ +    G + YI+KP S    +  I+  +  
Sbjct: 67  ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124


>gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 231

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+    +L  +++   G+      +G E L+L  +   +++++D+ + +++G
Sbjct: 1   MHKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  ++++     + PV+ +TA     D     + G + Y++KP      +  ++  + 
Sbjct: 61  FAMLARLRK---THDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V+I+ED     +L    +E  G+  L   +G   L+ AR+ KPD+I++D+ L  + G
Sbjct: 1   MQTVLIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAKPDLILLDLMLPGMMG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +K   +   IP+I +TA   + D     + G + Y+ KP S    M  ++  + 
Sbjct: 61  TEVCRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|254413172|ref|ZP_05026943.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179792|gb|EDX74785.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 467

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 1   MLKK-----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55
           M KK     ++IVEDN  N+    + +  SG+  L   +G  A++     +PD+I++D+ 
Sbjct: 1   MDKKAAQGNLLIVEDNPTNLSFLFNYLTKSGFKVLVATDGKTAIQRVEAAQPDLILLDVM 60

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           +  + G E+ K++K    +++IPVI +TA +   ++    + G   YI+KPI     +  
Sbjct: 61  MPGMDGFEVCKRLKSSPSMRDIPVIFMTALSDTLNKVHGFEIGAVDYITKPIQPEEVVSR 120

Query: 116 IKKYI 120
           I+ ++
Sbjct: 121 IQTHL 125


>gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905]
          Length = 237

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D +    + +  +   GY  +   +G EAL+   + +PD++++DI L +  
Sbjct: 1   MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++  +    P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREIRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1140

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
           K++IV+D  +N+++  + +    Y   Q  NG EALE+     +PD+I++D+ +  +SG 
Sbjct: 730 KILIVDDEPVNIQVLINNLSVLKYEVTQATNGFEALEIIENGFRPDLILLDVMMPRMSGY 789

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++E     E+P++ +TA     D       G   Y+SKP S +  +  IK +I  
Sbjct: 790 EVCQILREKFPAIELPIVMLTAKNQVTDLVEGFNSGANDYLSKPFSKNELLARIKTHIRL 849

Query: 123 A 123
           A
Sbjct: 850 A 850


>gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 243

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IV+D     +  +  +   GY      +G +AL     + PD+I++DIQ+  + GL
Sbjct: 9   QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDIQMPRMDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+        P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 69  TAARRIRSTGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126

Query: 123 A 123
           +
Sbjct: 127 S 127


>gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp.
           SIP3-4]
 gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp.
           MP688]
 gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. MP688]
          Length = 228

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     +L    +  +G+  ++  +  +A  L R+  PD+II+D  L  +S
Sbjct: 1   MPANILIVEDEPAIQELLALNLTQAGHNPIRALSVEQAQMLIREALPDLIILDWMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  +++K D   + IP+I +TA   + D+ +  + G + Y++KP S       IK  +
Sbjct: 61  GIEFARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
 gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
          Length = 238

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG EALE A Q+  D+I++DI +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDYDLILLDIMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 66  VCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRS 122


>gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268]
 gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268]
          Length = 244

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +E   Y      +G EAL+   +    +II+D+ L  I G 
Sbjct: 5   QKILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPVALIILDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+  S    +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  EVCRRIRTSS---NVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5]
 gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5]
          Length = 249

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  KK+++V+D +L +K  R  +E  G       +G EALE AR  + D++++D+ L ++
Sbjct: 21  MSEKKILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVMLPKL 80

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ +QI+E     ++PV+ +TA +   D+    + G + YI+KP ++      IK  
Sbjct: 81  DGFQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAI 137

Query: 120 IGE 122
           +  
Sbjct: 138 MRR 140


>gi|262171161|ref|ZP_06038839.1| putative two-component response regulator [Vibrio mimicus MB-451]
 gi|261892237|gb|EEY38223.1| putative two-component response regulator [Vibrio mimicus MB-451]
          Length = 236

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN+   +  +D +  +G+  +   NG    +L     PD+II+DI +    G 
Sbjct: 5   KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++ S    +P+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 65  TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 238

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E   +L +  +E   YI  +  NG +AL  A ++  DVI++D+ L    G+E
Sbjct: 6   KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLMLPGRDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+I+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCKEIREK---KATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 122


>gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system
           with phor [Cupriavidus taiwanensis LMG 19424]
 gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Cupriavidus taiwanensis LMG 19424]
          Length = 235

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   S
Sbjct: 1   MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    K+++ +   ++IP+I +TA   + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GANFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|251800213|ref|YP_003014944.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547839|gb|ACT04858.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 255

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +    + +  +E  G+  +   +G EA+ LA + +PD+I++D+ L    
Sbjct: 1   MHGKILVVDDEQPIADILKFNLEKEGHQVICAFDGGEAVRLAFEEQPDLILLDLMLPVKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++++       +P+I +TA   + D+    + G + Y++KP S    +  +K ++
Sbjct: 61  GMDVCREVRTRL---HMPIIMLTAKDTEIDKVLGLELGADDYVTKPFSTRELLARVKAHL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 233

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +   +     ++ +GY  ++  +G EAL  A + KPD++++D+ L  + G E
Sbjct: 8   RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLPGMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++E  +L ++ VI +TA     D+    + G + Y+ KP +       I+  +  
Sbjct: 68  VCRLLRE--KLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRR 124


>gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans
           TK24]
 gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 248

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  +  +   GY      +G +ALE A  ++PD++++DIQ+  + GL
Sbjct: 15  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGL 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+   +L   P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 75  TAARRIRGAGDL--TPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 132

Query: 123 A 123
           +
Sbjct: 133 S 133


>gi|146319014|ref|YP_001198726.1| response regulator [Streptococcus suis 05ZYH33]
 gi|145689820|gb|ABP90326.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           05ZYH33]
          Length = 154

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   +G EALE+     PD++I+D+ L E+ G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P++ ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 248

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D    +K+    ++ +GY   Q  NG EALE   +  PD+I++D+ L ++
Sbjct: 1   MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+ +S    +P+I +TA     +       G + Y+SKP S       I   
Sbjct: 61  DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 231

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    +K+    ++   +  +  +NGMEA+ELA +  PD++++D+ L +I G E
Sbjct: 5   KVLVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLMLPDIDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++IK  S   +IP+I ++A   + D+    K G + Y +KP S +  +  I+  +  +
Sbjct: 65  VCRRIKSRS---DIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRRS 121


>gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
 gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
          Length = 239

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              ++IVED E    L R  +E  G+       G EA     +  PD++++D  +  +SG
Sbjct: 8   SAHILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+   E + +PVI +TA   + D  R    G + Y+ KP S+   +  ++  + 
Sbjct: 68  IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 127

Query: 122 EA 123
            A
Sbjct: 128 RA 129


>gi|113952901|ref|YP_731779.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
 gi|113880252|gb|ABI45210.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
          Length = 266

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+    +L    +E SG+   +  +G++   LA Q+ PD+I++D+ L  + 
Sbjct: 1   MKPSILLIEDDRDMSELVGGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPNVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D     IP++ +TA     D+      G + Y++KP  L      +K  +
Sbjct: 61  GLTLCQRLRRDERTASIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 230

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D    + L +  +E +G+  L   +G E  + AR+ K DVII+D+ L  + 
Sbjct: 1   MAKKVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ KQ++        P++ +TA + + D+    + G + YI+KP S    +  +K  +
Sbjct: 61  GMDVCKQLR--LGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
 gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
          Length = 234

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY      +G E LEL  +   D++++D+ L  I G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
 gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
          Length = 233

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    +    ++  GY      +G +A+EL    +PD++++DI L    
Sbjct: 1   MSRKIVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88]
 gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88]
          Length = 233

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D +    L    +E  GY  ++  NG++ALEL  + K D+II+DI +  +
Sbjct: 1   MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E   +I+E+   + +P+I ++A     D+      G + Y++KP +    +  +K  
Sbjct: 61  DGIEACTKIREE---KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D +         ++ + +  L+   G EAL L +  KPD++++DI L ++ 
Sbjct: 1   MGARILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K+I    +   + VI +TA     D+ R  + G + YI KP S    +  IK  +
Sbjct: 61  GFQVCKEI--SCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAIL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 228

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D++    L    +E  G    +  +  EAL+L  Q + D+II+DI +  + 
Sbjct: 1   MGTSILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+E+   + +P+I ++A +   D+ +    G + Y++KP +    +  +K  +
Sbjct: 61  GIEACMKIREE---RNLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|46014953|pdb|1NXO|A Chain A, Micarec Ph7.0
 gi|46014954|pdb|1NXP|A Chain A, Micarec Ph4.5
 gi|46014955|pdb|1NXS|A Chain A, Micarec Ph4.9
 gi|46014957|pdb|1NXV|A Chain A, Micarec Ph 4.2
 gi|46014958|pdb|1NXW|A Chain A, Micarec Ph 5.1
 gi|46014959|pdb|1NXX|A Chain A, Micarec Ph 5.5
 gi|116666718|pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
           Essential Response Regulator From S.Pneumoniae In
           Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
           Possible Phosphate In The Active Site
 gi|116666719|pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
 gi|116666720|pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-Rec On Bef3 Bound
          Length = 120

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EALE     +PD+II+D+ L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P++ ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 234

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + L    +E + Y  +   NG++A+E+ ++   D +IMD+ L ++ 
Sbjct: 1   MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E TKQI++  E  +IP+I +TA   + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GIEATKQIRKFDE--QIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 238

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++ ED E         +   G+  L+  NG+EA+ L +Q  P ++I+D+ +  + GL
Sbjct: 6   KRILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVMMPRMDGL 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++ S    +P+I +TA   + D+      G + Y++KP  +   +  ++  +  
Sbjct: 66  EVCQRVRQSS---TVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRR 122


>gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D +  ++L +  +   GY   +  +G+ ALE+ + +K D++I+DI + +  G
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ + + + +PVI ++A + + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 61  YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 237

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   S
Sbjct: 1   MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K+++ +   ++IP+I +TA + + D+      G + Y++KP S    +  IK  +
Sbjct: 61  GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++ED      L R  +   GY+     +G E L+ AR + PD++I+D+ L E+SG 
Sbjct: 6   ARILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPEMSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++E     ++P+I +TA     D+      G + YI+KP +    +  I+  +  
Sbjct: 66  EVCRRLRE-GLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRR 124


>gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 226

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V+I+ED +   +L    +E  GY  +   +G+  L+ A++  PD+I++D+ L  + G
Sbjct: 1   MQTVLIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQVPDLILLDLMLPGMMG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K +K+  +  +IPVI +TA   + D     + G + Y+ KP S    +  IK  + 
Sbjct: 61  TEVCKILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|167629886|ref|YP_001680385.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592626|gb|ABZ84374.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 277

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++ I +D    ++L R  +E  G+ A+   NG + L    Q  PD++I+DI +   +G
Sbjct: 1   MTRIFIADDEPPILELIRRYLEKEGFEAVTFTNGDDLLAAYAQQVPDLVILDIMMPGTNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ K+++ DS   ++P+I V+A   + D     + G + Y+SKP S    +  +K  + 
Sbjct: 61  LDVCKRLRRDS---DVPIIIVSAKDDEIDRILGLELGGDDYLSKPFSPRELVVRVKNILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 246

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 66/121 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++++ED++    L    +E +GY   Q  +G++   LA Q +PD+I++D+ L ++ G
Sbjct: 1   MPRILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ ++A     D+      G + Y++KP  L+  +  ++  + 
Sbjct: 61  FTVCQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
 gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
          Length = 224

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++++ED     +L R  +E  G+  L+  +G+  L +A    PD++++D+ L  + G
Sbjct: 1   MQRILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSELPDLVVLDLMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +++K       IPV+ +TA   + D       G + Y+ KP S+   +  I+  + 
Sbjct: 61  CDVCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAILR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
 gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
          Length = 237

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+I +D +    L +  +E   Y      NG EAL L  Q+K ++II+D+ + ++ G+E
Sbjct: 5   RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    IP++ +TA   + D+      G + YI+KP S++  +  IK  +  
Sbjct: 65  VCRRLRNKT---NIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120


>gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|28868500|ref|NP_791119.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851738|gb|AAO54814.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331015209|gb|EGH95265.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 245

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +      +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQFRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K +++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 224

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+E   ++   ++   G+  +   +G +AL++ R  +PD++++D+ L  + 
Sbjct: 1   MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRPDLVLLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +Q++ +S   ++P++ +TA +   D  R  + G + Y+ KP   +  +  ++  +
Sbjct: 61  GIEVCRQVRAES---DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 230

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D +  + + +  +E  GY    + +G +AL   +    D++++D+ L ++
Sbjct: 1   MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+++E     ++P+I +TA A + D+    + G + YI+KP  +   +  I+  
Sbjct: 61  DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|258621380|ref|ZP_05716414.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573]
 gi|258626807|ref|ZP_05721614.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603]
 gi|258580854|gb|EEW05796.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603]
 gi|258586768|gb|EEW11483.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573]
          Length = 236

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN+   +  +D +  +G+  +   NG    +L     PD+II+DI +    G 
Sbjct: 5   KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++ S    +P+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 65  TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|119484444|ref|ZP_01619061.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119457918|gb|EAW39041.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 437

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+ +++K+  + +  +GY      NG  AL+ A    PD+I++DIQ+  + G E 
Sbjct: 11  ILIVDDSPVHLKVLSESLVNAGYEVAVAINGETALKQALYDPPDLILLDIQMPGMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             Q+K     Q +P+I +TA A    + +  K G   Y++KP      +  IK ++
Sbjct: 71  CHQLKAHPSTQAVPIIFMTALADTSSKIKGLKAGAVDYLTKPFQQEEVLARIKVHL 126


>gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +   +L +  +E   Y+  +  NG  ALE A Q+  D+I++DI +    G+E
Sbjct: 6   RILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+E    +  PVI +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 66  VCKGIREK---KATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRS 122


>gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++E  GY      +G +A+   ++H PD++++D+ L  + 
Sbjct: 1   MSSRILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+   ++ +S    +P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GFEVCAALRAES---NVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family
           [Megamonas hypermegale ART12/1]
          Length = 230

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+DN+  + +     +  GY  +   +G EAL++ ++ +PD+I++D+ + +I G E
Sbjct: 2   KVLIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRERPDIILLDVMMPKIDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I++      +P+I +TA     ++    + G + YI KP S    M  IK  +  
Sbjct: 62  VCRVIRK---TSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRR 117


>gi|186686849|ref|YP_001870042.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186469201|gb|ACC85001.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 448

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+DN  N+++  D++   GY     ++G  AL+  + + PD+I++D+ +  I G E
Sbjct: 11  TILVVDDNPTNIQVLFDVLSEIGYRVAIAKSGEAALQRVQSYHPDIILLDVMMPGIDGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IG 121
             +++K D    +IPVI +TA +   D+ +    G   YI+KPI     +  I+ +  + 
Sbjct: 71  TCQRLKADCATCDIPVIFMTALSDTVDKVKGLSLGAVDYITKPIQHEEALARIRVHLQLR 130

Query: 122 EA 123
           E+
Sbjct: 131 ES 132


>gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D    ++L +  +E  GY  +    G  A   A   +PD+II+D+ L  I G+E
Sbjct: 5   TILVVDDEHDILELLKYNLEREGYSVITVETGEAAAATAAAKQPDLIILDLMLPGIDGVE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+   E+++IP+I +TA +   D     + G + Y++KP S  + +  I+  +  
Sbjct: 65  VCKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLRR 123


>gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas
           albilineans GPE PC73]
 gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas
           albilineans]
          Length = 229

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D      +    +    +  +   +  EA  L     PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREAQSLIADRVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++ ++D+  +E+P+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 234

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D    + L    +E  GY      +G E LELA +   D II+D+ L  + G
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EIT++++++    E P++ +TA   + D     + G + Y++KP S    +  +K    
Sbjct: 61  MEITQRLRQEKN--ETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 233

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 66/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+D    ++L +  +   G+  +   NG +A+++AR+ KPD+II+D+ L E+ G ++
Sbjct: 4   ILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYDV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++K D E    PVI ++A   + D+    + G + YI+KP S    +  +K  +  
Sbjct: 64  LQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRR 121


>gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 239

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +   +L +  +E  GY+  +  NG +A+E + + +   I++DI + E  GLE+
Sbjct: 7   VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I+E +     P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 67  CAEIRERAAT---PIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRS 122


>gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED E    L R  +E+ GY       G EA    R+  PD++I+D  L  +S
Sbjct: 1   MPTNILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRLRESVPDLLILDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +P++ +TA   + +  R    G + Y+ KP S+   +  ++  +
Sbjct: 61  GIELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + ++AL+L  + + D+II+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
          Length = 239

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330]
 gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330]
 gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D    + L    +E  GY      +G E LELA +   D II+D+ L  + G
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPTMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EIT++++++    E P++ +TA   + D     + G + Y++KP S    +  +K    
Sbjct: 61  MEITQRLRQEKN--ETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
 gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
          Length = 238

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  +E   Y   +  +G +AL++A  +  +VI++D+ +    G+E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNYEVILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E    +  PV+ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCRELRE---FKATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 6/124 (4%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K    ++IV+D    ++L    ++  G+  +   NGM+AL    +   D++++DI + +
Sbjct: 1   MKEQMHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIMMPD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E+ ++I++     +IP++ +TA + + D  R  + G + YI KP SL      I+ 
Sbjct: 61  MDGFEVCQRIRQ---TSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIET 117

Query: 119 YIGE 122
            +  
Sbjct: 118 TLRR 121


>gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
 gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
          Length = 260

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+ +++  +   A+       PD++++D  +   S
Sbjct: 32  MARRILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 91

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +K DS+ ++IPV+ +TA   + D  +  + G + Y+ KP S    +  +K  +
Sbjct: 92  GIQVIKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAIL 151

Query: 121 GE 122
             
Sbjct: 152 RR 153


>gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 240

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +   +L +  +E  GY+  +  NG +A+E + + +   I++DI + E  GLE+
Sbjct: 9   VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I+E +     P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 69  CAEIRERAAT---PIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRS 124


>gi|56752243|ref|YP_172944.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300669|ref|YP_400877.1| two component LuxR family transcriptional regulator [Synechococcus
           elongatus PCC 7942]
 gi|56687202|dbj|BAD80424.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169550|gb|ABB57890.1| two component transcriptional regulator, LuxR family [Synechococcus
           elongatus PCC 7942]
          Length = 235

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 59/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +  +  +E SG+      N  E  E  +Q +PD++I D+ +  + G + 
Sbjct: 10  ILLVDDEPGLREAVQAYLEDSGFRVRTAANAQEGWEQLQQARPDLVITDVMMPRVDGYQF 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++ D   + +PVI +TA  M GD  +  + GC+ YI+KP      +  ++  +  
Sbjct: 70  LAQLRGDDRFKALPVILLTARGMTGDRIQGYEAGCDDYIAKPFDPDELVVRVENLLRR 127


>gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 230

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    ++  G+      +G + LE  +    D+II+D+ + +I G  
Sbjct: 4   KILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVMMPKIDGFT 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++    + IP+I +TA   + D+    + G + Y+ KP S+      +K  +  
Sbjct: 64  VLRELRK---TRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRR 119


>gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
 gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
          Length = 231

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L R  +E  GY       G EA  L ++ +PD++++D  L  +SG
Sbjct: 1   MPKILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEAELLLQESQPDLLLLDWMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++  SE + +P+I +TA   + +  R    G + Y+ KP S+   M  ++    
Sbjct: 61  IELCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|153875667|ref|ZP_02003366.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152067869|gb|EDN66634.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 365

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IV+D   N+KL  +++    +     ++G +ALE     KPD+I++D+ +  + G E  
Sbjct: 10  LIVDDIPTNLKLLMNVLRHLDFTVQVAQDGEDALEQVAYAKPDLILLDVMMPGMDGFETC 69

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++K D +  +IPVI +TA     D+ +  + G   YI+KP+     +  +  ++
Sbjct: 70  RRLKADEKTHDIPVIFMTALTETVDKVKGFEIGAVDYITKPVQPEEVLARVNTHL 124


>gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
 gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
          Length = 230

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+V+IV+D     ++    +E + Y  L+  +  EA  L    KPD+I++D  L  +SG
Sbjct: 3   SKQVLIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQKPDLILLDWMLPGVSG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  +++K D    EIP+I +TA   + ++ +  + G + YI+KP S    +  +K  + 
Sbjct: 63  IEFARRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++V+D    +K+    ++ +GY      NG EA+E   +  PD+I++D+ L ++
Sbjct: 1   MSKARILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVMLPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+ +S    +P+I +TA     +       G + Y+SKP S       I   
Sbjct: 61  DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++I+DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRTK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 230

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  K V+IV+D     ++    +E + Y  L+  +  EA  L    +PD+I++D  L   
Sbjct: 1   MSGKTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIIDKQPDLILLDWMLPGT 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ +++K++    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  
Sbjct: 61  SGVELARRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120

Query: 120 IGEA 123
           +  A
Sbjct: 121 LRRA 124


>gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D +  ++L +  +   GY   +  +G+ ALE+ + +K D++I+DI + +  G
Sbjct: 1   MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ + + + +PVI ++A + + D+    + G + YI+KP S+   +  +K  + 
Sbjct: 61  YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 228

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D      + +  +E +GY  L    G E L++A + +PD+I++D+ L  + 
Sbjct: 1   MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEEQPDLIVLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EIT +++E S   ++ ++ +TA + + D     + G + Y++KP S    +  ++  +
Sbjct: 61  GMEITARLRERS---DVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 239

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 239

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|213968363|ref|ZP_03396507.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301384629|ref|ZP_07233047.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058918|ref|ZP_07250459.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302133031|ref|ZP_07259021.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927001|gb|EEB60552.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|330963154|gb|EGH63414.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 245

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +      +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQFRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K +++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match)
           [Frankia alni ACN14a]
          Length = 358

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  AL LAR+ +PD +++DI L ++ GLE
Sbjct: 20  RVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMDGLE 79

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ +S   ++PV+ +TA     D       G + Y++KP SL   +  ++  +  A
Sbjct: 80  VLRRLRAES--PDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRA 137


>gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
 gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
          Length = 230

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 62/122 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E    L +  +E  GY       G EA    R+  PD++++D  L  +SG
Sbjct: 1   MPKVLIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEADLRLRESLPDLLLLDWMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+   E   +PVI +TA   + +  R    G + Y+ KP S+   M  ++  + 
Sbjct: 61  IELCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E        L+E  G+      +G EAL +  +   D+I++D+ L  +SG
Sbjct: 1   MSRILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++ S    +PVI +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRQVRQRS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++I+DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRTK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|86135169|ref|ZP_01053751.1| two-component system response regulator [Polaribacter sp. MED152]
 gi|85822032|gb|EAQ43179.1| two-component system response regulator [Polaribacter sp. MED152]
          Length = 229

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K   K+++V+D    +++    +   GY      NG EA++ A+++ P +I++DI + 
Sbjct: 1   MNKSDIKILLVDDEPDILEIVGYNLRNEGYQVFTAENGQEAIKSAKKNTPHLILLDIMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  ++I++   L  + +  +TA      +    + G + YI+KPI   + +  IK
Sbjct: 61  EMDGIEACEKIRKIKNLDNVIIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKIK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 SLLRR 125


>gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
 gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
          Length = 237

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  Q+  +++I+D+ + ++
Sbjct: 1   MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   IP++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 228

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY      +G E LEL  +   D++++D+ L  I G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 234

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D    + L +  +E   Y      +G EAL+  R    D II+D+ L  +SG
Sbjct: 1   MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++T +I+E+    + P++ +TA   + D+    + G + Y++KP S    +  IK    
Sbjct: 61  LDVTCKIREEKI--QTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIER 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++++D+    +L    +  +G       +G   L        D +++D+ +  + 
Sbjct: 1   MSTRVLLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEASAFDAVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+I+  S    IPVI +TA   + D     + G + Y+ KP S    +  ++  +
Sbjct: 61  GLEVCKRIRAKSR---IPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
 gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
          Length = 233

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D++   +L R  +E  GY  +   +G EA+      KPD+I++DI L  I G +
Sbjct: 5   RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S    +P+I +TA     D+    + G + YI KP      +  IK     
Sbjct: 65  VCREIRKKS---NVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120


>gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 229

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KV++V+D    ++L    +   GY     ++G  A+E A++ +P +I++DI +    G
Sbjct: 6   SHKVLVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQKFQPQLILLDIMMPNQDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  +Q++E  E     +I +TA + +  E    + G + YI+KPI     M  I  Y  
Sbjct: 66  VETCRQLRETPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYFR 125

Query: 122 E 122
            
Sbjct: 126 R 126


>gi|262163963|ref|ZP_06031702.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus VM223]
 gi|262027491|gb|EEY46157.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus VM223]
          Length = 1177

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G E LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 832

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887


>gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 242

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  +G+      +G  AL LAR   PD++++D+ L ++ G 
Sbjct: 10  ARLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPDMDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++E  E   +PV+ +TA     D+ +    G + Y++KP SL   +  I+  +  
Sbjct: 70  SVTRRLREKGE--HVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127


>gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|153870406|ref|ZP_01999815.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073131|gb|EDN70188.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 358

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N+K+  D +++ G+     ++G  AL       PD+I++D+ + +I G E
Sbjct: 8   TILVVDDIPTNIKVLFDYLKSIGFKVRIAKSGEHALAQIALSPPDLILLDVMMPKIDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K D + +EIPVI +TA     D+ +  + G   Y++KP      +  I  ++
Sbjct: 68  VCRRLKADVKTREIPVIFMTAKTETVDKVKGFEVGAVDYVTKPFQQEEVLARINAHL 124


>gi|258623081|ref|ZP_05718094.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM573]
 gi|258584694|gb|EEW09430.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM573]
          Length = 1177

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G E LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 832

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887


>gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
 gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
          Length = 237

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+I +D +    L +  +E   Y      NG EAL L  Q+K ++II+D+ + ++ G+E
Sbjct: 5   RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    IP++ +TA   + D+      G + YI+KP S++  +  IK  +  
Sbjct: 65  VCRRLRNKT---NIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120


>gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Acidovorax ebreus TPSY]
 gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 235

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  +V+IVED     +L    +  +G+  +   +G  A        PDVI++D  L  
Sbjct: 1   MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SGL++ ++ + DS  ++IP++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  QSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 227

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    +L R  +E + +  +   +G EAL  A +  PD+I++DI L E+ G E
Sbjct: 2   KILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGLPELDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++ SE   +P++ +TA   + D     + G + Y++KP S    +  IK     +
Sbjct: 62  VCRRIRQRSE---VPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRS 118


>gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 255

 Score =  164 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +      R  +  +GY  +   +G++ALE+  + +P ++I+D+ +  + GLE
Sbjct: 25  KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGLE 84

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ + + +  P++ +TA     D       G + Y++KP +L   +  ++  +  +
Sbjct: 85  VCRHLRSEGDDR--PILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRS 142


>gi|320352850|ref|YP_004194189.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320121352|gb|ADW16898.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032]
          Length = 357

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+ +N +L   L+   GY      +G EAL L R  +PD+I++DI + ++ GLE+
Sbjct: 8   ILVVEDSPINQRLLCKLLGKEGYAVRTADHGQEALALLRTFRPDLILLDILMPQMDGLEL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K     ++IPVI +++     D+    + G   YI+KP   +  +  I  ++
Sbjct: 68  CRLLKVGEATRDIPVIFISSLDDTSDKLSGFEAGGVDYITKPFHPAEVLARISTHL 123


>gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  +  +   GY      +G +ALE A  ++PD++++DIQ+  + GL
Sbjct: 13  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDIQMPRMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+   +    P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 73  TAARRIRSAGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130


>gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
          Length = 238

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|330466987|ref|YP_004404730.1| response regulator receiver modulated diguanylate cyclase
           [Verrucosispora maris AB-18-032]
 gi|328809958|gb|AEB44130.1| response regulator receiver modulated diguanylate cyclase
           [Verrucosispora maris AB-18-032]
          Length = 326

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 60/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+E   +     +   G+  +   +G EALEL  + +PD+ ++D+ +  I GLE+
Sbjct: 11  ILVVDDDEDIARFVEFNLRLHGFDVMLASDGQEALELIERQRPDLAVVDLMMPRIDGLEL 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++++ D     +PVI +TA  M  D+      G + Y+ KP      +  +   +  
Sbjct: 71  TRRLRADPMTAVLPVIMLTAKGMTQDKVNGLSAGADDYLVKPFDTLELLARVTSTLRR 128


>gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++V+D    +K+    ++ +GY      NG EA+E   +  PD+I++D+ L ++
Sbjct: 1   MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVMLPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+ +S    +P+I +TA     +       G + Y+SKP S       I   
Sbjct: 61  DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16]
 gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator
           PhoB, OmpR-family [Ralstonia eutropha H16]
          Length = 235

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   S
Sbjct: 1   MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    K+++ +   ++IP+I +TA   + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GANFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium DO]
 gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 234

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D    + L    +E  GY      +G E LELA +   D II+D+ L  + G
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EIT++++++    E P++ +TA   + D     + G + Y++KP S    +  +K    
Sbjct: 61  MEITQRLRQEKN--ETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|325292659|ref|YP_004278523.1| Response regulator pleD [Agrobacterium sp. H13-3]
 gi|325060512|gb|ADY64203.1| Response regulator pleD [Agrobacterium sp. H13-3]
          Length = 456

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    +    +  +   +G +AL++  Q + D+I++DI +  + 
Sbjct: 1   MTARVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALDICNQEQVDIILLDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K + +   IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 61  GFEVCERLKANPKTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +    + +     ++              AL  A  +  +++I++   ++   L 
Sbjct: 156 RVLVADGRASSQERIVRALKPV-AEVDAVTEPQAALLKAASNPFELVIVNSNFEDYDPLR 214

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +P++ V          R    G   YI +PI  +  +      I  
Sbjct: 215 LCSQLRSLERTRFLPLLLVAEQGADDMVARALDLGVNDYILRPIDPNELVARSLTQIRR 273


>gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 237

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D     +  +  +E  GY      +G+ ALE+  +   +++++D+ +  + GL
Sbjct: 7   ARVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGL 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++       +PV+ +TA    GD       G + Y+ KP  L   +  ++  +  
Sbjct: 67  TACRRLRAAGN--HVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRR 124

Query: 123 A 123
           +
Sbjct: 125 S 125


>gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
 gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
          Length = 247

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE A Q+  D+I++DI +    G+E
Sbjct: 15  RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 75  VCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRS 131


>gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++I+DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRTK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 234

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY      +G E LEL  +   D++++D+ L  I G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K    ++IV+D    ++L    +   G+  +   NGMEAL    +   D++++DI + +
Sbjct: 1   MKEQMHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIMMPD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E+ ++I++     +IP++ +TA + + D  +  + G + YI KP SL      I+ 
Sbjct: 61  MDGFEVCQRIRQ---TSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIET 117

Query: 119 YIGE 122
            +  
Sbjct: 118 TLRR 121


>gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED E    L +D +E S +      +G   L+       D+II+D+ L  + 
Sbjct: 1   MSKRILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQKGLGGDFDLIILDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI +QI++    +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++
Sbjct: 61  GFEICRQIRDQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117

Query: 121 GE 122
             
Sbjct: 118 AR 119


>gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 230

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D      L +  ++ +GY      +G+ A + A++ + + I++D+ L E+ G
Sbjct: 1   MTKILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + KQ+++D      P+I VTA   + D     + G + YI+KP S    +  +K  + 
Sbjct: 61  MTVLKQLRQDKV--STPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D     +  +D ++ SG+      N  E  +L +Q  PD++I D+ + ++ 
Sbjct: 1   MSAQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  KQ++ED   Q +PV+ +TA  M  D  +  + G +AY+ KP      +  ++  +
Sbjct: 61  GYQFLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLL 120

Query: 121 -GE 122
              
Sbjct: 121 IRR 123


>gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 233

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + ++AL+L  + + D++I+DI +  + 
Sbjct: 6   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 66  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 238

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL  A   +PD+II+D+ L ++ 
Sbjct: 1   MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++ +  +E  GY  +   +G EAL    +  PD+I++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRETPDLIVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++ S   ++P+I +TA A   D     + G + Y+ KP S       I   +  
Sbjct: 70  VCLELRKQS---DVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRR 125


>gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 272

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALEL     PD++++D+ + ++ G  
Sbjct: 34  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDGYG 93

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 94  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 149


>gi|242240331|ref|YP_002988512.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132388|gb|ACS86690.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
          Length = 229

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY  ++  +   A+    +  P+++++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDVAVSRLAEPYPELVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  K +K ++  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
 gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +L +K  R  +E  G       +G EA+ELAR+ + D++++D+ L +  G
Sbjct: 1   MAKILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVMLPKHDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E     ++P+I +TA     D+    + G + YISKP ++      IK  + 
Sbjct: 61  YEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 241

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D E   +L +  +E   Y+  +  +G  ALE A  +  DVI++D+ L    G+E
Sbjct: 9   HILVVDDEERIRRLLKMYLERENYVIDEAGDGNVALEKALANDYDVILLDLMLPGKDGIE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+I+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 69  VCKEIREH---KTTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRA 125


>gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 235

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYNPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea]
 gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea]
          Length = 243

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   NG EAL + R+  P ++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  A
Sbjct: 67  VCQELRKES---DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123


>gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D    +++    +   G+  +   NG +AL L ++    ++I+D+ L  ISG 
Sbjct: 5   KKILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLMLPRISGE 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI  +I+    + ++P+I +TA + + D+      G + Y++KP S+   +  +K  I  
Sbjct: 65  EICNKIRA---VSDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIRR 121


>gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1431

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++V+DN    +  + L+    Y+     +G+ ALE    H PD+++ D+ +  + G
Sbjct: 606 SARILLVDDNADMREYVKRLLSRH-YVVETATDGLAALEALADHLPDLVLTDVMMPRLDG 664

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +   ++ ++  +EIP+I ++A A +  +    + G + Y+ KP S    +  ++  +
Sbjct: 665 FGLLSALRSNNRTREIPIILLSARAGEEAKVEGLEAGADDYLIKPFSARELLARVEATL 723



 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+D+    +    L+E +G   +   + +EAL++  Q  PD+++ DI + ++ G  +
Sbjct: 1310 VLVVDDDTDTREFVAFLLEQAGARVITAVSALEALQVFTQSPPDILLSDIGMPDMDGYML 1369

Query: 65   TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +QI+     Q  +IP IA+TA+A + DE+R  K G + +ISKP+     +  I   I
Sbjct: 1370 MRQIRALPPDQGGKIPAIALTAYAGEIDEKRALKVGFQRHISKPVDPDNLIRAIVNLI 1427


>gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
 gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
          Length = 232

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 235

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  +V+IVED     +L    +  +G+  +   +G  A        PDVI++D  L  
Sbjct: 1   MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SGL++ ++ + DS  ++IP++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  QSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
 gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
          Length = 230

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           + +V  ++VED+    +L     +   +  + T +G EAL LAR++ PD++++D  ++ I
Sbjct: 1   MARVKMLLVEDDAALAELLVFHFKREDFEVVHTPDGEEALLLARENTPDIVLLDWMVEGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ ++++   E   +P+I +TA   + D  R  + G + Y++KP S    +  +   
Sbjct: 61  SGIEVCRRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 231

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D     +  ++ ++ SG+      N  E  EL +Q+ PD++I D+ + ++ 
Sbjct: 1   MSAQLLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  KQ+++D     +PVI +TA  M  D  +  + G +AY+ KP      +  I   +
Sbjct: 61  GYQFLKQLRDDPRFASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLL 120


>gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
 gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
          Length = 230

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 64/118 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E  G+   +  NG EA+ L  +  PD+I++D  +  +SG+E+
Sbjct: 9   VLVVEDESAQREVLTYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++K   E + IP+I ++A + + D  R  + G + Y+ KP S+   M  ++  +  
Sbjct: 69  CRRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLRR 126


>gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 248

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  +  +   GY      +G +ALE A  ++PD++++DIQ+  + GL
Sbjct: 15  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGL 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+   +L   P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 75  TAARRIRGAGDL--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 132

Query: 123 A 123
           +
Sbjct: 133 S 133


>gi|297583783|ref|YP_003699563.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142240|gb|ADH98997.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 233

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I +D +  +    D IE  GY A+Q  NG E L++  Q K D++++D+ + E+ G+E
Sbjct: 7   TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGME 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     + IPVI VTA + + D     + G + YI KP S    +  I+  I  
Sbjct: 67  ALRELRTS---RRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRR 122


>gi|126031095|pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
           Active Double Mutant D53a And Y102c
          Length = 127

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++   L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K ++ +S  ++IPV+ +TA   + D  R  + G +  I+KP S    +  IK  +
Sbjct: 61  GIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106]
 gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106]
          Length = 1361

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            K++IV+D+ +N+++  + +    Y   Q  +G+EA+E+      PD+I++D+ +  ++G 
Sbjct: 891  KILIVDDDPINLQVLVNYLCLQNYAVTQASSGIEAMEILEAGYIPDLILLDVMMPRMTGY 950

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+T++I+E     ++P++ +TA     D     + G   Y+SKP++    +  IK +I 
Sbjct: 951  EVTRRIRETWPPHQLPIMMLTAKNQVSDLVAGLEVGANDYLSKPLNKDELLARIKTHIR 1009


>gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina]
 gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina]
          Length = 248

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL L ++  P++I++DI + ++ G  
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKENPNLIVLDIMIPKLDGYG 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  VCQEIRKES---DVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRR 126


>gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 247

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +  +  +E SG+  +   N  +AL+L    +P +II DI +  + G +
Sbjct: 19  RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTAQPQLIISDIMMPGMDGYQ 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              Q+++      +PV+ +TA  M  D  +  + G +AY+ KP      +  +   I  +
Sbjct: 79  FLAQLRKLEPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIERS 138


>gi|320160702|ref|YP_004173926.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
 gi|319994555|dbj|BAJ63326.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
          Length = 381

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 70/122 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D+   ++L   ++E  GY  L   NG +A+ +AR  +PD+I++D+ + ++ 
Sbjct: 1   MAEKILIVDDDVQTLRLVGLMLERQGYKILAASNGTQAISMARTERPDLILLDVMMPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + ++++ E  +IP++  TA A   D+    + G + Y++KPI  +     ++  +
Sbjct: 61  GFSVARTLRKEPETADIPILMFTAKAQVEDKIAGYEAGADDYLTKPIHPAELTAHMRAIL 120

Query: 121 GE 122
             
Sbjct: 121 SR 122


>gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 233

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++++D      L R  +   G+   +  NG E L+  R    DV+++D+ + ++ G +
Sbjct: 5   RVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVMMPDMDGWQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++E   +  +P++ +TA     D+      G + Y+ KP+     +  I   +  +
Sbjct: 65  VCKKMRE---IAPVPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRS 121


>gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 228

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D     +L R+ ++ SGY   +  +G  AL L      D++I+D+ +  + G
Sbjct: 1   MAKILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLMMPFMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   ++++  +     PVI +TA   + D+    +GG + Y+ KP S    +  +K  + 
Sbjct: 61  MSCLREMR--TRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLN 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 265

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 28  MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLMLPKKD 87

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 88  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 144

Query: 121 GE 122
             
Sbjct: 145 RR 146


>gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 235

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G E  ELA   KPD+I++D+ L  + G
Sbjct: 1   MTKILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK+++  SE  ++P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLR--SEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 238

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D +   +L +  +E  GY+  +  NG +AL +A +     I++DI + E  GLE+
Sbjct: 7   VLIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMALEKDYHCILLDIMMPEKDGLEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 67  CAELREK---KTTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRS 122


>gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
          Length = 230

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED +    L    ++  GY      +G EAL +A +  PD++I+D  L ++S
Sbjct: 1   MTPYVLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  +E + +P+I +TA   + D  R    G + Y+ KP S+      ++  +
Sbjct: 61  GIEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + +EALEL  + + D+II+D+ +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+E+   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
 gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
          Length = 233

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +  +   +G EAL     ++P+++++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+        P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREIRSK---HNTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRR 121


>gi|153873132|ref|ZP_02001814.1| signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152070402|gb|EDN68186.1| signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 480

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +  + L+ +  Y  +   +G EAL  A +  PD+I++D+ +  + G E
Sbjct: 6   RLLIVDDEKRGREALKILLASENYQLILAASGEEALLKAPELVPDLILLDVMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + I+   +L E+P+I +TA + +    R  + G + +I KP      +  ++  I 
Sbjct: 66  VCQHIRAHPQLGEVPIIMLTAMSDRKTRLRGIEAGADDFIIKPFDRVELLARVRTIIR 123


>gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+E   ++ R  +E+ GY     R+G  ALEL R+    +II+D+ L  +S
Sbjct: 1   MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++ ++ +   P+I +TA  +  D+    + G + Y+SKP ++   +  I+  +
Sbjct: 61  GLEVCQRLRSENVV--TPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + +EAL+L  + K D+II+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+E+   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 233

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  +E+ GY       G +A    ++  PD++++D  L  +S
Sbjct: 1   MGARILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  ++ +++P+I +TA   + +  R    G + YI KP S+   +  +K  +
Sbjct: 61  GIELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + +EALEL  + + D+II+D+ +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+E+   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 1383

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN    +  + L+    Y      +G+ ALE  R+H PD+++ D+ +  ++G E
Sbjct: 631 RILLADDNGDMREYVKRLLSQY-YEVETVADGIAALEAIRRHPPDLVLSDVMMPRLNGFE 689

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++ +   +E+P+I ++A A +       K G + Y+ KP S    +  I+  +
Sbjct: 690 LLQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFSARELLARIEATL 746


>gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
 gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
          Length = 238

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    ++L +  +E  G+  LQ   G +AL+L  + + D +I+D+ L  I 
Sbjct: 1   MKKTILLVDDEAHILELLKYTMENEGFSTLQAETGEQALKLLGRERVDAVILDLMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K I+     + +PV+ +TA + + D     + G + Y+ KP  +   +  +K  +
Sbjct: 61  GLEVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|154493674|ref|ZP_02032994.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184]
 gi|154086884|gb|EDN85929.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184]
          Length = 1348

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + V++ +DN+  ++     + +  YI ++  NG EAL +  +  P ++I DI + E++GL
Sbjct: 1097 QTVLLADDNQEVLQYLEQQL-SLDYIVVKAFNGKEALAMIEESYPHIVISDIMMPEMNGL 1155

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ K+IKE+     IPVI +TA +M    E     G + YI KP  +S+    I+  +
Sbjct: 1156 ELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNLL 1213


>gi|46014956|pdb|1NXT|A Chain A, Micarec Ph 4.0
 gi|116666721|pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
          Length = 120

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D +    + +  +   GY  +   NG EALE     +PD+II+ + L EI G
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILXLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++      +P++ ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + ++AL+L  +   D+II+DI +  + 
Sbjct: 6   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 66  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family),
           BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278]
          Length = 231

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D+    ++ R  +  +G    +  +G  AL      +PD+I++D+ + E  
Sbjct: 1   MSPRILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARFADDRPDLIVLDVGMPEFD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+      ++P++ ++A   + D     + G + Y++KP S    +  +   +
Sbjct: 61  GLEVCRRIR---RTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 240

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 68/119 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED +   ++   ++E +G+ ++   +  +A +   +  PD+I++D  L  +SG+E 
Sbjct: 6   ILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDAQKALDEALPDLILLDWMLPGVSGVEW 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K+D   +E+P+I +TA   + D+ R  + G + Y++KP S    +  I+  +  +
Sbjct: 66  ARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRRS 124


>gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +      +G +AL     ++P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  +     P+I ++A +   D+    + G + YI KP      +  ++  +  
Sbjct: 65  QVCREIRSKAAT---PIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRR 121


>gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 239

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|330998526|ref|ZP_08322347.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
 gi|329568257|gb|EGG50073.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
          Length = 1341

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN   +++   ++ T  Y  L   NG+EALE  +    D+I+ D+ +  + G  +
Sbjct: 1094 ILLVDDNTQLLEMMEKILATK-YRVLTAENGLEALEQLKASAVDLIVSDVMMPGMDGFAL 1152

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K   E   IPVI +TA     D     + G + Y++KP  L +    I   +
Sbjct: 1153 CRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLL 1208


>gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 230

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D+     + R  ++  G+  ++  +G++ L LA+   PD+I++DI + EI G
Sbjct: 1   MTKILLIDDDPHIRDIVRFALKREGFAVVEAGDGVQGLALAQADSPDLILLDIGMPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++ +S    +P+I +++   + D     + G + Y++KP S       +K  + 
Sbjct: 61  TEVCRRLRRESR---VPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
 gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
          Length = 237

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+I +D +    L +  +E   Y      NG EAL L  Q+K ++II+D+ + ++ G+E
Sbjct: 5   RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    IP++ +TA   + D+      G + YI+KP S++  +  IK  +  
Sbjct: 65  VCRRLRNKT---NIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120


>gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA3]
 gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA2]
 gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL097PA1]
 gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL099PA1]
 gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266]
          Length = 232

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+    +     ++ SGY      +G+EAL       PD +IMD+ +  + 
Sbjct: 1   MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE T+ ++ +    ++P++ +TA     D       G + Y+ KP +L   +  ++   
Sbjct: 61  GLEATRMLRSNGN--DVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 265

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +L    +E SG+      +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKGQALALQYNPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L      IK  +  +
Sbjct: 65  CQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123


>gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 239

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
 gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
          Length = 237

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   S
Sbjct: 1   MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K+++ +   ++IP+I +TA + + D+      G + Y++KP S    +  IK  +
Sbjct: 61  GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 232

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +IV+D      L    +E  GY  ++  +G EA+ +    + D++++DI + ++
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQRIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+Q++       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQVRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 60/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   ++L R  +E +G+      +G  A  L RQ +PD++I+D+ L +  G +I
Sbjct: 4   VLVVDDDPGIVRLVRSYLEQAGFRVASAFDGATARRLIRQERPDLVILDLMLPDEDGFDI 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++ D     +P+I +TA     D     + G + YI KP +    +  +K  +  
Sbjct: 64  ARSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVLRR 121


>gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + +EALEL  + + D+II+D+ +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+E+   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
          Length = 233

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 244

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++++IV+D     +  +  +   GY      +G +ALE A  ++PD++++DIQ+  + G
Sbjct: 10  TQRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDIQMPRMDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L   ++I+   +    P++ +TA    GD       G + Y+ KP  L      I+  + 
Sbjct: 70  LTAARRIRAAGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLR 127

Query: 122 EA 123
            +
Sbjct: 128 RS 129


>gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
 gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
          Length = 223

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+D +   +L R  +E  G+  ++  +G   L    + + D+I++DI + ++ G
Sbjct: 1   MATILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGRKQIDLILLDIMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
                 ++E S+   +P+I +TA + + D     + G + YI KP S +  +  +   + 
Sbjct: 61  YRFCMHVRERSQ---VPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 228

 Score =  164 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++I+ED     +L    +E  G+      +G+  LE AR  KPD+I++D+ L  + 
Sbjct: 1   MKQRILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAARDSKPDLIVLDLMLPGML 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K +++D+    IPV+ VTA   + D     + G + YI KP S+      I+  +
Sbjct: 61  GTEVCKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 227

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   L+E+ G+       G  AL L R  +PD++++D+ L  + 
Sbjct: 1   MSTRILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + + I+E+S   ++P+I ++A     D     + G + Y++KP   S+ +  +K  +
Sbjct: 61  GVSVCRLIREES---DVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 231

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    +  R  +  +GY     ++G EAL+L    +PD +++D+ +  + 
Sbjct: 1   MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +
Sbjct: 61  GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
 gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
          Length = 230

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED +    L    ++  GY      +G EAL +A +  PD++I+D  L ++S
Sbjct: 1   MTPYVLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  +E + +P+I +TA   + D  R    G + Y+ KP S+      ++  +
Sbjct: 61  GIEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 231

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 65/122 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E    L R  +E  GY       G EA    R+ +PD++++D  L  +SG
Sbjct: 1   MPKVLIVEDEEPLSLLLRYNLEAEGYAVEACERGDEAEIRLRESQPDLLLLDWMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++  +E + +PVI +TA   + +  R    G + Y+ KP S+   M  ++  + 
Sbjct: 61  IELCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37]
 gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37]
          Length = 228

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+     L R  +E +G+  +   +G  AL  A +  PD+I++DI L E+ G E
Sbjct: 2   KILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGLPEMDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++  S   ++PV+ +TA   + D     + G + Y++KP S    +  +   +  +
Sbjct: 62  VCRRLRARS---DVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRRS 118


>gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 228

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + ++AL+L  +   D+II+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
 gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
          Length = 245

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV+D+E   +L    +    +   +  +G  A+ L ++++PD+I++DI L    G 
Sbjct: 5   KKILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIMLPGKDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I++     ++P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  DVCREIRK---TSKVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 229

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + + R  +   GY  L   +G EA+ +A +  PD+I++DI L +  
Sbjct: 1   MNEKILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKEDPDLILLDIMLPKQD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++E       P+I +TA   + D+    + G + YI+KP S+   M  +K  +
Sbjct: 61  GFSVCKKLREKITS---PIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 237

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    Y      +G EAL++    KP++I++D+ L  + G 
Sbjct: 5   QKILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLMLPGMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++  S+   +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCRELRSSSQ---VPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis]
 gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
          Length = 243

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   NG EAL + R+  P ++++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  A
Sbjct: 67  VCQELRKES---DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123


>gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 227

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I +D +   ++ +  +E  G+  + T +G  AL    +  PD+II+D+ L EIS
Sbjct: 1   MPKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+++S    +P+I +TA     D+    + G + Y++KP      +  +K  +
Sbjct: 61  GWDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi]
 gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi]
          Length = 239

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     K+    +   GY  +   +G EA+ L  Q +P+++I+DI L ++ G  
Sbjct: 9   KILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQEQPNLVILDIMLPKLDGYT 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++ S    +P+I +TA     D     + G + Y+ KP         ++  +  +
Sbjct: 69  VCSELRKKS---NVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRS 125


>gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 248

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G+EALE  RQ  PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAFRQSSPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++++D+     L +  +  +GY      +G   + L   +  D++I+D+ +  + 
Sbjct: 1   MSSNILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVMMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  QI+E     ++PV+ +TA     D  +    G + Y+ KP +++  +  I+  +
Sbjct: 61  GWQVCGQIRE---YYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    + L R  +E  G+      +G+ ALE+ ++  PD++I+D+ L E+ G E+
Sbjct: 6   ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVMLPELDGFEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            KQ++  ++   +P++ +TA     D+    + G + Y++KP +    +  +K  +  
Sbjct: 66  CKQLRAQND--PLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRR 121


>gi|167630424|ref|YP_001680923.1| response regulator receiver modulated serine phosphatase
           [Heliobacterium modesticaldum Ice1]
 gi|167593164|gb|ABZ84912.1| response regulator receiver modulated serine phosphatase
           [Heliobacterium modesticaldum Ice1]
          Length = 394

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 66/117 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L R  +  +GY  L   NG +ALE  ++  PD+I++D+ +  ++G E+
Sbjct: 12  ILVVDDVVTNVELMRLQLTRAGYQVLTAFNGEQALESIQRTLPDLILLDVMMPGMNGFEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             ++KED   Q IPV+ VTA     D  +  + G + +ISKP +    +  +K  + 
Sbjct: 72  CAKLKEDPHTQLIPVVLVTALHEVEDRIKGIEAGADDFISKPFNRVELLTRVKSLLR 128


>gi|15888624|ref|NP_354305.1| response regulator PleD [Agrobacterium tumefaciens str. C58]
 gi|15156350|gb|AAK87090.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 456

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    +    +  +   +G +AL +  + + D+I++DI +  + 
Sbjct: 1   MTARVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALAICDEEQVDIILLDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 61  GFEVCERLKANPNTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +    + +     ++              AL  A     +++I++   ++   L 
Sbjct: 156 RVLVADGRASSQERIIRALKPV-AEVDAVTEPQAALLKAASSPFELVIVNSNFEDYDPLR 214

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q +     + +P++ V          R    G   YI +PI  +  +      I  
Sbjct: 215 LCSQFRSLERTRFLPLLLVAEQGADEMVARALDLGVNDYILRPIDPNELVARSLTQIRR 273


>gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 235

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +  + L    +E +G+  +   +G EALE     +P +II+D+ L ++ 
Sbjct: 1   MGKKILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K++++   +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCKRLRQQQIM--TPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum]
 gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 232

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +      R  +  +GY  +   +G++ALE+  + +P ++I+D+ +  + GLE
Sbjct: 2   KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ + + +  P++ +TA     D       G + Y++KP +L   +  ++  +  +
Sbjct: 62  VCRHLRSEGDDR--PILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRS 119


>gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
 gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D      L +  +E +GY      +G  A EL  +   D I++D+ L  + G
Sbjct: 1   MAKILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLMLPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + K I++D      PVI VTA   + D     + G + YI+KP S    +  +K  + 
Sbjct: 61  MTVLKTIRQDKI--STPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 257

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+    ++    +  +G    +  +G  AL  A  H+PD++++D+ L  + GLE
Sbjct: 18  HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E      +PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 78  VCRRMRERHP---VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133


>gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 230

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D +  + + +  +E  GY    + +G +AL   +    D++++D+ L ++
Sbjct: 1   MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVMLPKL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+++E     ++P+I +TA A + D+    + G + YI+KP  +   +  I+  
Sbjct: 61  DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 227

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D     ++ R   E  G+   +  +GM+A+E+ R+   D+IIMD+ + E+ G
Sbjct: 1   MSRILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKEDFDLIIMDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++I++    ++ P+I ++A   + D+    + G + Y+ KP S    M  +   I 
Sbjct: 61  FSACREIRK---FKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
 gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
          Length = 238

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+I +D +    L +  +E   YI     +G EAL L  Q+K ++II+D+ + ++ G+E
Sbjct: 5   RVLIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKYNLIILDLMMPKVDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    IP++ +TA   + D+      G + YI+KP S++  +  IK  +  
Sbjct: 65  VCRRLRNKT---NIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRR 120


>gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51]
 gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +    + +  ++  G+      NG+ AL L +++  D++++D+ L  +SG E
Sbjct: 2   RILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLMLPGLSGEE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+I++ S    +P+I +TA     D       G + YISKP S    +  +K  +  
Sbjct: 62  ICKEIRKISA---VPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRR 117


>gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + ++AL+L  + + D++I+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|149912107|ref|ZP_01900695.1| putative DNA-binding response regulator [Moritella sp. PE36]
 gi|149804813|gb|EDM64853.1| putative DNA-binding response regulator [Moritella sp. PE36]
          Length = 237

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M  K  +++V+D+    +L  + ++ +G+  L    G E   +   + PD+I++D+ +  
Sbjct: 1   MSTKKQILVVDDDVEIKELLSEYLDQAGFSVLTAGEGKEMQRVLATNTPDLIVLDVMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G  + ++I+      ++P+I +TA + + D     + G + Y++KP S    +  IK 
Sbjct: 61  DDGFTLCQKIR---RTSQVPIIMLTANSDEADRIVGLEIGADDYMAKPFSPRELLARIKA 117

Query: 119 YIGEA 123
            +  +
Sbjct: 118 LLRRS 122


>gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
 gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
          Length = 266

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  ++  +++I+D+ + ++
Sbjct: 30  MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNYNLVILDLMMPKV 89

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   IP++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 90  DGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 146

Query: 120 IGE 122
           +  
Sbjct: 147 MRR 149


>gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 227

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+     L    ++  GYI  +  +GMEAL+   Q  PD+I++DI + ++ G
Sbjct: 1   MTRILIVDDDRQIADLIEVYLKNDGYIIDKAGDGMEALKKLEQDPPDLIVLDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  K ++++++   +P++ V+A A   D+      G + Y+ KP +       +K  + 
Sbjct: 61  LEFCKYVRKNNQ---VPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 232

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +    +    ++  GY  +   +G  AL+LA    PD+II+D+ L  + G E
Sbjct: 5   RILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPRMDGWE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K + E   IP+I +TA   + D     + G + Y+ KP SL+  +  +   +  
Sbjct: 65  VCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRR 123


>gi|254411354|ref|ZP_05025131.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181855|gb|EDX76842.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 483

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++D+  N+++  + + ++G+      +G  ALE      P ++++D+ +  I G E 
Sbjct: 28  ILIIDDSPNNLEILSETLTSAGFEIAVALDGETALEQIAYDPPTLVLLDVMMPGIDGFET 87

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +  EIP+I +TA     D+ +    G   YI+KP      +  +K ++
Sbjct: 88  CRRLKSNPDTHEIPIIFMTALTDTIDKVKGLNLGAVDYITKPFQQEEVLARVKVHL 143


>gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED        +D +E  GY  +   +G E L+     KPD++++D+ + ++ G
Sbjct: 1   MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  +++  +    +P++ +TA     D       G + Y+ KP S    +  ++  + 
Sbjct: 61  FALCAELRRLAN--PVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 263

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   ++L    +   GY  L+  +  EAL++      D+ I+DI L  + G 
Sbjct: 28  KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +Q++   + +  PV+ ++A   + D+    + G + YI+KP S+   +  IK     
Sbjct: 88  ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147


>gi|73748021|ref|YP_307260.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73659737|emb|CAI82344.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 233

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           ++K  ++IV+D+ + +K  +      G++     NG EAL +  Q+ PD+I++D+ +  +
Sbjct: 1   MRKNNILIVDDDPIIIKFVKANFVADGWLVTTANNGQEALRILNQNIPDIIVLDVLMPVM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E   QI++ S    IP+I ++A     D+ +  K G + Y++KP  +      ++  
Sbjct: 61  DGMETCIQIRKQS---SIPIIMLSAKGSSFDKIQCLKLGADDYLTKPFDIDELTARVESV 117

Query: 120 IGEA 123
           +  A
Sbjct: 118 LRRA 121


>gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
 gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
          Length = 236

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E    L R  +E  GY       G EA    R+ +PD++++D  L  +SG
Sbjct: 6   MPKVLIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEAEIRLRETQPDLLLLDWMLPGLSG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++   + + +PVI +TA   + +  R    G + Y+ KP S+   M  ++  + 
Sbjct: 66  IELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILR 125

Query: 122 EA 123
            A
Sbjct: 126 RA 127


>gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 247

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  ++L    +   G++     +G  AL LA +   D I++DI L ++ 
Sbjct: 8   MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++  S+  + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 68  GIEVCKRLR--SKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAIL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
          Length = 232

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  L+  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 242

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D    + L    ++ + +      NG +AL +   +  D++++D+ L E+SG
Sbjct: 1   MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+ D    + PVI +TA   + D+    + G + Y+ KP S    +  I   + 
Sbjct: 61  EEVLKRIRMDRN--DTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 229

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++VED+    ++   ++   GY  + +  G EAL   ++  PD++I+D+ L ++ G
Sbjct: 3   TAKILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPDLDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q++       IPVI V+A   + D+      G + Y++KP S +  +  +K  + 
Sbjct: 63  LEVCRQLRAKYA---IPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +   GY  +   +G EAL   R   PD+I++D+ + ++ G  
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTPDLIVLDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P+I +TA     D     + G + Y++KP S       I   +  
Sbjct: 67  VCQELRKES---DVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRR 122


>gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 239

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++V+D E  ++L    +   GY      +G  AL+LA     D I++DI L ++ 
Sbjct: 1   MKKHVLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I+        P++ V+A   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKRIRAKGIT--TPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D+E   ++    + ++GY   +  NG EA  +    KPD++++DI L  + G+E
Sbjct: 7   KVLIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIMLPGVDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++ SE   IPVI +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 67  VLKWIRKSSE---IPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRR 122


>gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 242

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D     +  R  +   GY      +G++AL     + PD++++D+Q+  + GL 
Sbjct: 10  RILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDVQMPRMDGLT 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+       +P++ +TA    GD       G + Y+ KP  L      I+  +  +
Sbjct: 70  AARRIRASGST--VPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 127


>gi|302342093|ref|YP_003806622.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfarculus baarsii DSM 2075]
 gi|301638706|gb|ADK84028.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfarculus baarsii DSM 2075]
          Length = 518

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 68/119 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IV+D  +N+++  +L    G   +   +G  ALELAR+  PD++++D+ +  ++G 
Sbjct: 12  ARILIVDDEPINIEIMSELFSLHGAETISASDGATALELARREMPDLVLLDVMMPGMNGY 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ +++K D   + +PV+ VT      D+ +  + G + ++SKP+ ++  +   +  + 
Sbjct: 72  EVCRRLKADEVTRRLPVVMVTGLGQIDDKIKGLEAGADDFLSKPVHMAELVTRTRSLLR 130


>gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 1139

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN         L++ S Y      +G  AL+ A +H PD+I+ DI +  + G 
Sbjct: 644 ARILLADDNADMRDYVMRLLKGS-YRVEAVADGEAALKAALKHPPDLILSDIMMPRLDGF 702

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++++ +   + IPVI ++A A +         G + Y++KP S    +  ++ ++ 
Sbjct: 703 GLLREVRNNPSTRLIPVILLSARAGEESRVEGLGHGADDYLTKPFSAHELLARVRSHLR 761


>gi|323495909|ref|ZP_08100977.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           sinaloensis DSM 21326]
 gi|323319125|gb|EGA72068.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           sinaloensis DSM 21326]
          Length = 1128

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 60/115 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D  +N+++    +   GY     ++G EALE     +P+++++DI +  +SG ++ 
Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVSTAKDGHEALEKVAIERPELVLLDIMMPGMSGYQVC 784

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++ + +  ++PVI +TA     D  R    G   Y+SKP +       I  ++
Sbjct: 785 ETLRLEYDHSQLPVIMLTALNQADDRVRGFNAGANDYLSKPFNKQELAARILAHL 839


>gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R]
 gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 255

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +      R  +  +GY  +   +G++ALE+  + +P ++I+D+ +  + GLE
Sbjct: 25  KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRMDGLE 84

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ + + +  P++ +TA     D       G + Y++KP +L   +  ++  +  +
Sbjct: 85  VCRHLRSEGDDR--PILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRS 142


>gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 63/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+    +L        GY    T +G EAL LA +  PD++++D  +   SG+E
Sbjct: 5   KLLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ + E   +P+I +TA + + D  R  + G + Y++KP S    +  +   +  
Sbjct: 65  VCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRR 123


>gi|86607343|ref|YP_476106.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555885|gb|ABD00843.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 121

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 72/120 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED++   ++   L++ +G+  +   +G+EA+E  +Q+KPD+I++DI +  ++G
Sbjct: 1   MSRVLVVEDSQSQREMIGKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +K D   Q+ P++  ++   + D     + G +AYI+KP      + TIK+ + 
Sbjct: 61  YEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGLRQGADAYIAKPFQPQELVGTIKQLLR 120


>gi|54303563|ref|YP_133556.1| putative DNA-binding response regulator [Photobacterium profundum
           SS9]
 gi|46916994|emb|CAG23756.1| putative DNA-binding response regulator [Photobacterium profundum
           SS9]
          Length = 241

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++V+D++   +L  + +  SG+       G E         PD+I+MD+ +    G 
Sbjct: 5   KKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRLAGGYPDLILMDVMMPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++     ++P+I +TA + + D+    + G + YI+KP S    M  IK  +  
Sbjct: 65  TLCQYIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121


>gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132]
 gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819]
 gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1]
 gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR
 gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR
 gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR
 gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR
 gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR
 gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR
 gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR
 gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR
 gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR
 gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR
 gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR
 gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR
 gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR
 gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR
 gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR
 gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus]
 gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819]
 gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 233

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
 gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
          Length = 237

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  Q+  +++I+D+ + +I
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCKKLR---DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 231

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I+ED E   ++ +  ++  GY A     G E L   R+ + D+I++DI L E+S
Sbjct: 1   MTHRILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPEMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K+I+      + PVI +TA +   D+ +    G   Y++KP  +   +  I+  +
Sbjct: 61  GIDVLKRIRATE--SQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118


>gi|284051798|ref|ZP_06382008.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 558

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K++IV+D+ +N+++  + +    Y   Q  NGMEALE+      PD+I++D+ +  ++G 
Sbjct: 94  KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 153

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+T++I+ED    ++P++ +TA     D     + G   Y+SKP++    +  IK +I 
Sbjct: 154 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIR 212


>gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
          Length = 238

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV+IVED E   +L +D +E SG+     ++G   L LA     ++II+D+ L  + 
Sbjct: 9   MSEKVLIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLMLPGVD 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI +Q++E    +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++
Sbjct: 69  GFEICRQVREQ---KNTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 125

Query: 121 GE 122
             
Sbjct: 126 AR 127


>gi|307153462|ref|YP_003888846.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983690|gb|ADN15571.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 645

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 63/117 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++  D++E +G+  +   +G  A+E+     PD+I++DI +  + G E 
Sbjct: 10  ILIVDDTPTNLEMLLDILEDAGFKVVVAEDGESAIEMVEYAPPDLILLDILMPRLDGFET 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +++K + +  +IP+I +TA     ++ +    G   Y++KP      +  I  ++ 
Sbjct: 70  CRRLKSNPKTADIPIIFMTALIDNVEKLKGLNLGAVDYVTKPFEHEEVLARINIHLR 126



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLE 63
           ++V+D     +  + L+E   Y  L   NG+EA+EL    +HK  +++MDI +  + G  
Sbjct: 523 LLVDDEAGIRETTKILLENYNYQVLTANNGIEAIELYAQYEHKVSLVLMDIMMPAMGGDT 582

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             + +++ +   E+ +I ++         +  K   +A++ KP +    + TI
Sbjct: 583 AIRTLQKMN--PEVKIIGISGLISSEKLSQEMKMKTQAFLPKPYTAQELLHTI 633


>gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 228

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 68/119 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    +++    + T GY  +   NG+EA+E A+++KP +II+D+ + E+ G+E
Sbjct: 7   KILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKKYKPHLIILDVMMPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++I+E+S+L E  +  +TA      +      G + YI+KPI   + +  +K  +  
Sbjct: 67  ACERIREESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALLRR 125


>gi|322834089|ref|YP_004214116.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
 gi|321169290|gb|ADW74989.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
          Length = 229

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +GY A++  +   A+    +  P++I++D  L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGYQAVEAEDFDSAIGQLVEPYPELILLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K ++  +EIPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|312130834|ref|YP_003998174.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907380|gb|ADQ17821.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1291

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 67/115 (58%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN    ++ ++++    Y   +  +GME   +A++  PD+II DI + ++ G+E+ 
Sbjct: 1047 LLVEDNREIRQMIKEILSPY-YQIREATDGMEGWNMAQEISPDLIISDIMMPQMDGIELC 1105

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K D +   IPVI +TA A    ++   + G +AYI+KP S ++ +  IK  +
Sbjct: 1106 GKLKTDPKTSHIPVILLTARATVAYKQEGYETGADAYITKPFSPNLLLVRIKNLL 1160


>gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 227

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IVED+E  ++L    ++++G+     ++G EAL  AR+  P  II+D+ L  +
Sbjct: 1   MSKDSILIVEDDEDIVELLAFNLQSAGFATETAKDGYEALTKARRTPPAGIILDLMLPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ K++K D +    P+I +TA   + D     + G + Y+ KP S    +  ++  
Sbjct: 61  DGFEVCKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LKR 123


>gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144]
 gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis
           FRI909]
          Length = 241

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   + R+G EA ELA ++    I++D+ L E+ 
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 219

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG +AL + +    D +I+DI + E++G+E+ 
Sbjct: 2   LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHYDFVILDIMMPEMNGIEVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 218

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL        D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|262172302|ref|ZP_06039980.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus MB-451]
 gi|261893378|gb|EEY39364.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus MB-451]
          Length = 1112

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G E LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 708 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 767

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 768 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 822


>gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
 gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
          Length = 241

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED  +        +E   Y      +G  A+E  ++H  D++I+D+ L ++SG 
Sbjct: 6   KRILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSFDLVILDLMLPKLSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+   ++  +P+I +TA     D     + G + Y+ KP S    +  ++     
Sbjct: 66  RVCRAIR---DVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRR 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|29349532|ref|NP_813035.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341441|gb|AAO79229.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1450

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE      ++++ +  Y  +   NG E L+ A  + PD+II D+ +  + GLE
Sbjct: 1192 TILVVEDNEELKAFLKNIL-SENYTVITASNGKEGLQHAVDNIPDLIISDVMMPVMDGLE 1250

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +QIKE++ +  IP+I ++A A   D     + G + YI+KP S +     I   + +
Sbjct: 1251 MIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309


>gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4]
 gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5]
 gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus
           273-4]
 gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 254

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++V+D+     L +  +E  G++     +G +  +L ++    ++++D+ L    G
Sbjct: 11  TQRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLMLPGEDG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + I K+++ED+   +IP+I +TA     D     + G + Y+ KP +    +  IK  + 
Sbjct: 71  ISICKRLREDNG--DIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLR 128

Query: 122 E 122
            
Sbjct: 129 R 129


>gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +L +K  R  +E  G       +G EALE A+  + D+I++DI L + +
Sbjct: 1   MGKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIMLPKYT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+E     ++PV+ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFEVCQMIRE---FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 242

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA+E   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 275

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 54  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 113

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 114 CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 168


>gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus
           132]
 gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754]
 gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796]
 gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus]
 gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus MW2]
 gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus]
 gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 04-02981]
 gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754]
 gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796]
 gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 241

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  NG EA ELA ++    I++D+ L E+ 
Sbjct: 1   MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 232

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+    +     ++ SGY      +G+EAL       PD +IMD+ +  + 
Sbjct: 1   MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE T+ ++ +    ++P++ +TA     D       G + Y+ KP +L   +  ++   
Sbjct: 61  GLEATRMLRSNGN--DVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931]
          Length = 234

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D    ++L    +  +G+  +   NG EA+E A   +PD+I++D+ +  + G 
Sbjct: 5   AKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T+++++       PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 65  EVTRRLRDAGRTY--PVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRR 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 228

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + ++AL+L  + + D++I+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 228

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E   ++ +  +ET+GY      +G  A E      P+++++D+ L  I G+E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++DS    +PVI +TA     D+    + G + Y+ KP      +  +K  +  
Sbjct: 67  VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122


>gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 235

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59
           M ++++IVED    ++        +G+  + T NG EA+ L  Q   PD++++D+ L  I
Sbjct: 1   MSERILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG ++ K +++    ++IP+I +TA     D+E     G + Y++KP S+   +  +K  
Sbjct: 61  SGYDVCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKAL 120

Query: 120 IGEA 123
           +  A
Sbjct: 121 MRRA 124


>gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D+    +L    +   GY   +   G  ALE+     PD++++D+ L E+ G
Sbjct: 1   MLKILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFESFYPDLVLLDVMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+I++       P+I +TA     D+    + G + Y+ KP      +  +K  + 
Sbjct: 61  YDVCKEIRKQHRT---PIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 244

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  NG EA ELA ++    I++D+ L E+ 
Sbjct: 4   MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 64  GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
 gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
          Length = 247

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  NG EA ELA ++    I++D+ L E+ 
Sbjct: 7   MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 67  GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 123

Query: 121 GE 122
             
Sbjct: 124 RR 125


>gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + +EAL+L  + + D+II+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y++KP +    +  +K  +
Sbjct: 61  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 70/119 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +  ++L    +  SGY  +   NG++A++LA++  P ++++D+ +  + G +
Sbjct: 5   KILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIPGLDGYD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I+ D++ ++I VI +TA   + D+    + G + Y++KP S+   +  IK  +  
Sbjct: 65  VCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRR 123


>gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D    + L    +  SG+  L    G +AL   R+  PD++++D+ L ++SG
Sbjct: 1   MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QIK D   + +PV+ +TA   + D     + G + Y++KP S+   +  +K  + 
Sbjct: 61  TEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 223

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +  + L    + ++GY      NG EA+++ +    D++++DI +  + GLE 
Sbjct: 3   ILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSESIDLVLLDIMMPFMDGLEA 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+      ++P+I +TA   + D     K G + Y+ KP S    +  I+  +  +
Sbjct: 63  AQEIR---TFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRS 118


>gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 248

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EAL+L    +PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLFHNCEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM]
 gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
 gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
          Length = 240

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D    ++L    +  +G+  +   NG EA+E A   +PD+I++D+ +  + G 
Sbjct: 11  AKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T+++++       PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 71  EVTRRLRDAGRTY--PVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
 gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
          Length = 226

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 68/123 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV +VED +  + L    ++  G+    + NG EAL   ++ +PD++++D  L ++S
Sbjct: 1   MDAKVFLVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEIKEQEPDLVLLDWMLPDLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I + +K+D + Q++P+I +TA   + D+      G + YI+KP   +  +  I   +
Sbjct: 61  GIDICRSLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
 gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
          Length = 244

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+       PD++++D  +   S
Sbjct: 16  MARRILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 75

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +K DS  +++PV+ +TA   + D  +  + G + Y+ KP S    +  +K  +
Sbjct: 76  GIQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAIL 135

Query: 121 GE 122
             
Sbjct: 136 RR 137


>gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+E   ++   ++   G+  +   +G +ALE+ R  KPD++++D+ L  + 
Sbjct: 1   MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +QI+ +S+    P++ +TA +   D  R  + G + Y+ KP   +  +  ++  +
Sbjct: 61  GIEVCRQIRAESDS---PIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 229

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   K+++VED+    +L        GY    T +G EAL LA +  PD++++D  +   
Sbjct: 1   MSAPKLLLVEDDTALAELVEYRFRGEGYDVRTTADGDEALLLAAEDTPDLVLLDWMIGGT 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ ++++       +P+I +TA + + D  R  + G + Y++KP S    +  +   
Sbjct: 61  SGIEVCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
 gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L +D +E SG+      +G   L+ A     D++I+D+ L  + G
Sbjct: 1   MSKILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++++ +   +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICRKVRAE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
 gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
          Length = 235

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     KL +  +E   +  +   +G+ AL+L +Q  PD+I++D+ L ++ GLE
Sbjct: 2   KILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQAPDLIVLDLMLPKLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +I++    ++  ++ +TA   + D       G + Y+ KP S    +  ++  +  +
Sbjct: 62  VCTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRS 121


>gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
 gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
          Length = 234

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + +++IV+D     ++    +E + +  L+  N     E+    +PD++++D  L  +
Sbjct: 1   MSRNRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G+E+ +++K D    E+P+I +TA + + ++ +    G + YI+KP S    +  IK  
Sbjct: 61  TGIELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAV 120

Query: 120 IGEA 123
           +  A
Sbjct: 121 LRRA 124


>gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
 gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
          Length = 237

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  Q+K +++I+D+ + +I
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+++   +   IP++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCKKLR---DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
 gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
          Length = 223

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED+    +L ++ ++ +GY      +G+EAL L    + D+I++DI L +I G
Sbjct: 1   MQRILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++ S   ++P+I +TA + + D+ +      + YI+KP S+ + +  I   + 
Sbjct: 61  YGVCELIRKQS---DVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus]
          Length = 239

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 7   MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 67  GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 123

Query: 121 GE 122
             
Sbjct: 124 RR 125


>gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+  K++IV+D++    L    +E  G    +  + +EAL+L  + K D+II+D+ +  +
Sbjct: 5   MMESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDVMMPNM 64

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+  +I+E+   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  
Sbjct: 65  DGIEVCMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQ 121

Query: 120 IGE 122
           +  
Sbjct: 122 LRR 124


>gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family
           [Thioalkalivibrio sp. K90mix]
          Length = 229

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++VED+    ++ +  +  +GY   +  +   A  L  +  PD+I++D  L + S
Sbjct: 1   MAVKILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLLEDPPDLILLDWMLPDTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  + +K     ++IP+I +TA   + D  R    G + Y++KP S    +  IK  +
Sbjct: 61  GLDWARTLKASPITKDIPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 218

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115


>gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 232

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+    +     ++ SGY      +G+EAL       PD +IMD+ +  + 
Sbjct: 1   MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE T+ ++ +    ++P++ +TA     D       G + Y+ KP +L   +  ++   
Sbjct: 61  GLEATRMLRSNGN--DVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
 gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
          Length = 238

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++DI +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122


>gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus
           ATCC 53653]
          Length = 262

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    ++    +  +G+   +  +G  AL  A    PD++++D+ L  + GL+
Sbjct: 9   RVLVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQWPDLVVLDLMLPGMDGLD 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 69  VCRALRGKGP---VPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRR 124


>gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 233

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGL 62
            +++VED     ++    +E +G+  LQ  +  EA      H+P +I++D  L    SG+
Sbjct: 5   TILVVEDEPAIREMIVTTLEMAGFECLQAEDVSEAHSQVVDHRPAMILLDWMLPGNQSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +++K+D  L EIP+I +TA   + ++ +    G + YI+KP S    +  IK  +  
Sbjct: 65  DLCRRLKKDELLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR 124

Query: 123 A 123
           +
Sbjct: 125 S 125


>gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 218

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115


>gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
 gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
          Length = 230

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IV+D     ++    +E + Y  L+  +  EA  L    +PD+I++D  L   SG+
Sbjct: 4   KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKQPDLILLDWMLPGTSGV 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K++    EIP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123


>gi|146306940|ref|YP_001187405.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145575141|gb|ABP84673.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 787

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 63/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +V++VEDN +N  + + ++   G   L   +G EALE   +   D+++MD  +  + G
Sbjct: 663 SARVLLVEDNPVNQMVAKGMLAKLGCQVLVAGHGGEALEALEREPVDLVLMDCNMPVMDG 722

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E +++I+ +    E+P++A+TA A+  + ER R  G   Y++KP         +  ++
Sbjct: 723 YEASRRIRANGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDSWL 781


>gi|86609393|ref|YP_478155.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557935|gb|ABD02892.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 121

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 72/120 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED++   ++   L++ +G+  +   +G+EA+E  +Q+KPD+I++DI +  ++G
Sbjct: 1   MSRVLVVEDSQSQREMISKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +K D   Q+ P++  ++   + D     + G +AYI+KP      + TIK+ + 
Sbjct: 61  YEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGIRQGADAYIAKPFQPQELVGTIKQLLR 120


>gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224]
 gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948]
 gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224]
 gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948]
 gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 247

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  NG EA ELA ++    I++D+ L E+ 
Sbjct: 7   MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 67  GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 123

Query: 121 GE 122
             
Sbjct: 124 RR 125


>gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 233

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+MIV+D+    +L   L+  SG+ A +  +G EAL+      PD++I+D+ +  + G
Sbjct: 3   MSKIMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKMLNDNPDLVIIDVMMPNMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + ++   E   +PVI +TA      + +    G + Y++KP      +  ++  + 
Sbjct: 63  FELCRHLRRYYE--NLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
 gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
          Length = 226

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++++ED+    +L    ++  G+      +G E L +A+    D+I++D+ L ++S
Sbjct: 1   MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I+E     ++P+I +TA     D+      G + Y++KP S    +  IK  +
Sbjct: 61  GMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|126031096|pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
           Active Double Mutant D53a And Y102c
          Length = 127

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+  ++  +   A+    +  PD+I++   L   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G +  I+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 238

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +   +L +  +E   +   +  +G  ALE A  +  DVII+DI + E  G+E
Sbjct: 6   KILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIMMPEKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++++   ++ PVI +TA   + +  +  + G + YI KP S    +  +K  +  
Sbjct: 66  VCKELRKE---KDTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRR 121


>gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++++ED+    +     +E  GY   +  NG + + + ++   D++++DI L  ++
Sbjct: 1   MDKKILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLPGLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  QI+E     +IP+I +TA +   D+ +    G + Y++KP  +   +  I+ ++
Sbjct: 61  GMEVCSQIRE---FSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D    + L    +  SG+  L    G +AL   R+  PD++++D+ L ++SG
Sbjct: 1   MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QIK D   + +PV+ +TA   + D     + G + Y++KP S+   +  +K  + 
Sbjct: 61  TEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|152986115|ref|YP_001350288.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961273|gb|ABR83298.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 227

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++D+ L  I G  
Sbjct: 2   RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120


>gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
 gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
          Length = 226

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I++D    ++L +  +E +GY    + +G +     ++ +PD+I++D  L  ISG
Sbjct: 1   MKKILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLKTKEFQPDLILLDWMLPNISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ K+I+ D  L++IPVI +TA  M+ D+    + G + YI+KP S+   +  I   + 
Sbjct: 61  IDLLKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 234

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D      + +  +E +GY  L    G E L++A   +PD+I++D+ L  + 
Sbjct: 1   MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EIT +++E S   ++ ++ +TA + + D     + G + Y++KP S    +  ++  +
Sbjct: 61  GMEITARLREKS---DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 242

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 56/119 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E  + A+Q  PDV+I D+ +    G  
Sbjct: 16  RILLVDDEPGIRTAVQAYLEDEGFAVTTAIDGEEGWQKAQQIVPDVVISDVMMPRCDGYG 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++ED  L   PVI +TA  M  D  +  + G + YI KP      +  ++  +  
Sbjct: 76  LLKRLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELIARVRNVVKR 134


>gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 225

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I++D++    + R  +   GY       G E L L  + +PD+II+DI + ++ 
Sbjct: 1   MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K++++D     IP++ VT      D     + G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCKRLRKD---AGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 232

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    ++  GY  ++  +G EA+ + +    D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---YHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 240

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 65/126 (51%), Gaps = 4/126 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQE 58
           M K+++++ED+    +L  D +  + Y       G E L+L   ++   D++++D+ L +
Sbjct: 1   MSKQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPD 60

Query: 59  ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G+++ ++I+  +++   ++P+I +TA     D     + G + YI+KP      +  I
Sbjct: 61  MDGMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120

Query: 117 KKYIGE 122
           +  I  
Sbjct: 121 RAVIRR 126


>gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
 gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
          Length = 1128

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y+SKP +       I+ ++
Sbjct: 786 ELRETHDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 839


>gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 228

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    ++L    ++  GY      NG EA+  AR+  PD+II+DI + ++ G+E
Sbjct: 7   KILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARKINPDLIILDIMMPKMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + ++   E +   ++ +TA + +  E      G + YI+KPI     +  I   +  
Sbjct: 67  ACRIMRSMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAILRR 125


>gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
 gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
          Length = 234

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D +    + +  +   GY      +G EA++   +  PD++I+D+ L +  
Sbjct: 1   MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++  +L    +I VTA A + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR
 gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR
 gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis]
 gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909]
 gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU144]
 gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU028]
          Length = 233

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254444474|ref|ZP_05057950.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258782|gb|EDY83090.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 482

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 1   MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M K     +++V+DN    +    L+    Y  L   +G+ ALEL  +H PDVI++D+ +
Sbjct: 1   MPKNPLSTILVVDDNLGARRSIEALLTQESYRFLLADSGVVALELLEEHTPDVILLDVMM 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             +SG E  ++I+ +S + EIP+I +TA   +    +    G + ++SKPIS       I
Sbjct: 61  PGMSGFETCQKIRANSRVSEIPIIMITALDDEESMIQGIDAGADDFLSKPISKIELRSRI 120

Query: 117 KKYIG 121
           +  + 
Sbjct: 121 RSILR 125


>gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 237

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D +    + +  +   GY  +   +G EAL+   + +PD++++DI L +  
Sbjct: 1   MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  +    P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|258591258|emb|CBE67555.1| Two-component response regulator (fragment) [NC10 bacterium 'Dutch
           sediment']
          Length = 329

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 67/118 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN  N++L   L+E  GY  +   +G+EAL       PD+I++DI + ++ G  
Sbjct: 12  RLLVVDDNAQNIELLTALMEAEGYEVISAADGLEALTHVAAAPPDLILLDIMMPKLDGYA 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +++KE++  + +P++ +TA   +    R  + G + +I+KP S +     I+  + 
Sbjct: 72  VCRRLKEEAATRLVPIVLLTALGAEEARIRGIEAGADDFITKPFSRTELKARIRSLLR 129


>gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus
           pseudintermedius ED99]
          Length = 241

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+   +++V+D     KL +  +E  GY+  +  +G EAL++A ++    I++D+ L E+
Sbjct: 1   MMTNEILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLMLPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+  +++E   L++ P+I +TA   + +     + G + YI KP S    +  +K  
Sbjct: 61  DGLEVAVKLRE---LKDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
 gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
          Length = 237

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   +  PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
 gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
          Length = 233

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGND 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Leuconostoc gasicomitatum LMG 18811]
 gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Leuconostoc gasicomitatum LMG 18811]
          Length = 229

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D      L +  +E +GY      +G  A EL  +   D I++D+ L  + G
Sbjct: 1   MTKILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLMLPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + K +++D      PV+ VTA   + D     + G + YI+KP SL   +  +K  + 
Sbjct: 61  MTVLKNLRQDKIA--TPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
 gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
          Length = 230

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 68/119 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVED     ++    +E  G+   +  +G +AL L ++ +PDV+++D  L  +SG+E
Sbjct: 8   HVLIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQALMLVQEDRPDVMVLDWMLPNLSGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+K   + +++ +I ++A + + D+ R  + G + Y+ KP S+S  M  ++  +  
Sbjct: 68  VCRQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRR 126


>gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1603

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
             +++V+D  +N ++ +  +    Y      NG +AL+        D++++D+ +  +SG 
Sbjct: 1192 HILVVDDEPINQQVLKSHLSALKYDITSALNGEDALKALSNGKHFDLVLLDVMMPRMSGY 1251

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +QI++     E+PVI +TA     D       G   YI+KP +   F+  +K ++
Sbjct: 1252 EVCEQIRKKFLPSELPVIMITAKNQVQDLVHGLNTGANDYITKPFTKDEFLARVKTHL 1309


>gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
          Length = 232

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+    +     ++ SGY      +G+EAL       PD +IMD+ +  + 
Sbjct: 1   MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE T+ ++ +    ++P++ +TA     D       G + Y+ KP +L   +  ++   
Sbjct: 61  GLEATRMLRSNGN--DVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 218

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL        D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLENDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++ +V+D+E    L R  +   GY      +G E L+L  Q  PD++I+D+ + ++ 
Sbjct: 1   MRQRIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++E      +PV+ +TA     D  +    G + Y+ KP +L   +  ++  +
Sbjct: 61  GWEVCRRVRE--AGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 224

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++IV+D      + ++  E  GY   +  +GM+A+EL +    DVIIMDI +  + G
Sbjct: 1   MKRLLIVDDEANIRLVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMDIMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+IK+    + IPVI ++A   + D+    + G + Y+ KP S    M  +K  I 
Sbjct: 61  FSACKEIKK---YKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224]
 gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948]
 gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937]
 gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30]
 gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3]
 gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796]
 gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224]
 gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948]
 gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937]
 gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3]
 gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30]
 gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796]
 gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 235

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 3   MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 63  GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)]
          Length = 248

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +G +  +L ++    ++++D+ L    G+ 
Sbjct: 15  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIS 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+++ED+   +IP+I +TA     D     + G + Y+ KP +    +  IK  +  
Sbjct: 75  ICKRLREDN--SDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 131


>gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 232

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D++    L R  +E  GY  + + +G EA+      KPD++++D+ L  + G +
Sbjct: 5   KVLIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVMLPGLDGWQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S    IP++ +TA +   D+    + G + YI KP      +  IK  +  
Sbjct: 65  VCREIRKKS---NIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRR 120


>gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
 gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
          Length = 238

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++DI +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCKGIREK---KATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122


>gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1]
 gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
 gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1]
 gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 229

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IVED +   +L    ++   Y      +G  AL+  R+   D++I+D+ L  I 
Sbjct: 1   MSKKILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKLRETVYDLVILDLMLPGIQ 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K I+ +S +Q+  +I VTA + + D+    + G + YI+KP S    +  +K  +
Sbjct: 61  GLEICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   +L +  +E  GY+  +  +G  AL LA      +I++D+ L  I G+E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVMLPGIDGVE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++   ++  PVI +TA   + +  +  + G + Y+ KP S    +  +K  +  +
Sbjct: 67  VCSRLRQ---VKATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123


>gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++++ED     +L    +   GY      +G E  + A ++  D+II+DI L  ++
Sbjct: 1   MSQKILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTYDLIILDIMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+  ++++  +  + PVI +TA   + +  +  K G + YI+KP  ++  +  +   +
Sbjct: 61  GFEVLSKLRQ--KGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435]
 gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR
 gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435]
          Length = 233

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|39936195|ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palustris CGA009]
 gi|192291911|ref|YP_001992516.1| response regulator PleD [Rhodopseudomonas palustris TIE-1]
 gi|39650050|emb|CAE28573.1| putative diguanylate cyclase (GGDEF) with response regulator
           receiver domain [Rhodopseudomonas palustris CGA009]
 gi|192285660|gb|ACF02041.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris TIE-1]
          Length = 457

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 69/121 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL  D +    +  +   NG++ALE+ ++ + D++++D+ + ++ 
Sbjct: 1   MSARILVVDDIPANVKLLEDRLSAEYFDVITASNGIQALEICQRAECDIVLLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K + +   IPV+ VTA     D  R  + G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRRLKSNPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    L+    +      N  EAL  A     D++I+ + L+   GL 
Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAADGNYDLLIVSLGLENFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++A+ A A       R  + G   Y+ +P+  +  M 
Sbjct: 216 LCSQARSLERTRHVPILAI-AEAENNARLLRGLEIGVNDYLLRPVDKNELMA 266


>gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ + +    D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIR---GKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++++ED+    +L    ++  G+      +G E L +A+    D+I++D+ L ++S
Sbjct: 1   MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I+E     ++P+I +TA     D+      G + Y++KP S    +  IK  +
Sbjct: 61  GMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
 gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 240

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  ++L    +   G++     +G  AL LA +   D I++DI L ++ 
Sbjct: 1   MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++   +  + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKRLRA--KGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 235

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus
           pseudintermedius ED99]
          Length = 233

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIMLPGQD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 239

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M  K   ++  +D+   ++L    +E   Y  L   +G +AL +  +  PD+I++D+ + 
Sbjct: 1   MPAKKTVILTADDDSQLLRLVSRNLELEDYEVLTASDGEQALAIVEKQLPDLILLDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G  + K I+E      +P+I +TA     D+ +    G + Y++KP S+   +  ++
Sbjct: 61  RVDGFTVCKHIRE---FSMVPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVR 117

Query: 118 KYIGEA 123
             +  +
Sbjct: 118 AVLRRS 123


>gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 218

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL        D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALTKLESDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|225387739|ref|ZP_03757503.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme
           DSM 15981]
 gi|225046157|gb|EEG56403.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 62/122 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D    ++     +   GY      +G EA+  AR+ +PD I++D+ L +ISG
Sbjct: 1   MKKILIVDDERDIVECLDMNLRKKGYATAFAYDGTEAVLTARRERPDCILLDVMLPKISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+   +K D     IPVI +TA   + D+      G + YI+KP         I+  + 
Sbjct: 61  IEVCHLLKADQATGHIPVIMLTAKGEEDDKVTGFDAGADDYITKPFGWRELFARIEVALR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 226

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D     +  +  +E SG+      N     EL +Q  PD++I DI + ++ 
Sbjct: 1   MSAHLLLVDDEPGLREAVQAYLEDSGFSVAAAPNAQAGWELLQQQTPDLVITDIMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  +Q+++D     +PV+ +TA  M  D  +    G +AY++KP      +  +K  +
Sbjct: 61  GYQFLQQLRDDPRYSRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNIL 120

Query: 121 GE 122
            +
Sbjct: 121 RQ 122


>gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii
           12D]
 gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
 gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family
           [Ralstonia pickettii 12D]
 gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
          Length = 237

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   S
Sbjct: 1   MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K+++ +   ++IP+I +TA + + D+      G + Y++KP S    +  IK  +
Sbjct: 61  GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU121]
          Length = 241

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  +G EA +LA ++    I++D+ L E+ 
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  Q++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEVATQLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|198274194|ref|ZP_03206726.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135]
 gi|198272869|gb|EDY97138.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135]
          Length = 1312

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN    +  R   E   Y  L   NG E  ++A+   P++II DI +  + G+E+
Sbjct: 1057 ILVVEDNRDIREYVRSSFEEM-YEVLTAANGKEGWDIAQSQIPNIIISDIMMPVMDGIEL 1115

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + IKED     IPVI +TA     D+E     G +++I+KP S  +    I   +
Sbjct: 1116 CRHIKEDMRTSHIPVILLTAKDTLQDKEEGYAAGADSFITKPFSARLLNSRINNIL 1171


>gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora]
 gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora]
          Length = 248

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 61/128 (47%), Gaps = 9/128 (7%)

Query: 1   MLK------KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI 54
           M+        ++IV+D     ++    +   GY  +   +G EALE   + +PD++++D+
Sbjct: 1   MMAPAPAKETILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHRCEPDLVVLDV 60

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            +  + G  + ++++++S   ++P++ +TA     D     + G + Y+ KP S      
Sbjct: 61  MMPRLDGYGVCQELRKES---DVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEA 117

Query: 115 TIKKYIGE 122
            I+  +  
Sbjct: 118 RIRCVLRR 125


>gi|163759328|ref|ZP_02166414.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Hoeflea phototrophica
           DFL-43]
 gi|162283732|gb|EDQ34017.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Hoeflea phototrophica
           DFL-43]
          Length = 457

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  L   +GM AL +  Q + D+I++DI +  I 
Sbjct: 1   MTARILVVDDIPANVKLLEARLMAEYFEVLTAADGMTALSICDQTQVDLILLDIMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPV+ VTA     D  R  K G + +++KP++    M  +K  +
Sbjct: 61  GFEVCERLKRNPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMTRVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VE+           +           +   AL  A +   ++II+   L++   L +
Sbjct: 158 VLLVENRANAQDRMGRALNGV-AEITVIGDPQAALFEAAEKPYELIIVSSALEDYDPLRL 216

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + IPV+ V     +    R  + G   Y+ +P+  +  +      I  
Sbjct: 217 CSQLRSLERTRFIPVLVVAEQGEENLVIRALELGVNDYLVRPLDPNELVARSVTQIRR 274


>gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
 gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
          Length = 226

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+I ED+ L  +   D+ E  GY   +  NG EAL+L    KPD I +DI + EI+G +
Sbjct: 2   KVLIAEDDILIREGLVDIFEDEGYQIAEAANGREALDLYHNEKPDFICLDIMMPEINGYD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++     +IPVI ++A + + D+ +  + G + YI+KP  +   +  ++     
Sbjct: 62  VCREIRKVD--SDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARVRAVTRR 118


>gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
 gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
          Length = 239

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 237

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   +  PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 230

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 57/119 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED    + L R   E  G+  L   NG +AL++      D++++D+ L    GLE
Sbjct: 5   TVLLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPVDLVVLDLMLPGKDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + +PVI +TA   + D     + G + Y+ KP S    +   K  +  
Sbjct: 65  VCRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRR 123


>gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
 gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
          Length = 237

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  Q+  +++I+D+ + +I
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+++   +   IP++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCKKLR---DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
          Length = 235

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  +KL    +   G+      NG +AL LA     D I++DI L ++ 
Sbjct: 1   MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++      + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|330447872|ref|ZP_08311520.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492063|dbj|GAA06017.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 243

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+V++V+D++   +L  + +  +G+       G E         PD+I++DI +    G
Sbjct: 4   SKQVLVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAAGYPDLILLDIMMPGDDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++ S   ++P+I +TA + + D+    + G + YI+KP S    +  IK  + 
Sbjct: 64  FTLCQHIRKSS---DVPIIMLTAVSDEMDQIIGLEIGADDYIAKPFSPRQLLARIKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|325299779|ref|YP_004259696.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
 gi|324319332|gb|ADY37223.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
          Length = 1437

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE   K    ++    Y  L+  NG   L++A +  PD+II D+ + E+ G+E
Sbjct: 1175 TILLVEDNEELRKFTGRVLRHE-YRVLEAENGRAGLDMALKEIPDIIISDVMMPEMDGIE 1233

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +   IK +  +  IPV+ ++A A   D  +  + G + YI+KP S +  +  IK  + +
Sbjct: 1234 LLDIIKHNPSVCHIPVVVLSAKASLEDRIKGLEYGADGYITKPFSSAYLLARIKSLMRQ 1292


>gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 230

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I +DN   +K+ +  IE  G+  +   +G EAL     + P +I++DI +  + 
Sbjct: 1   MDKNILIADDNIEIIKILKPYIEKEGFTVIFALDGEEALLKFNHYNPQLILLDIMMPLMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+E S     P+I +TA +   D+      G + YI KP S    +  IK  +
Sbjct: 61  GIEVCNKIREKS---NTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 221

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+    ++    +   GY  ++  +G+EAL    Q    ++++D+ L  +SG
Sbjct: 1   MARVLLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKIPQAS--LVVLDLMLPRLSG 58

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++ D    E+PV+ +TA   + +  R    G + Y++KP S    +  ++  + 
Sbjct: 59  WEVARELRRD--YPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 230

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+D +  ++L    ++  GY      NG EA+  A++  PD+II+D+ + ++ G+
Sbjct: 6   QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + ++   E +   ++ +TA + +  E      G + YI+KPI     M  I   +  
Sbjct: 66  EACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRR 125


>gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 227

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IVED+E  ++L    ++++G+ A   R+G E L  AR++ P  +I+D+ L  +
Sbjct: 1   MSKDSILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNPPAAVILDLMLPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ K++K D +    P+I +TA   + D     + G + Y+ KP S    +  ++  
Sbjct: 61  DGFEVCKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LKR 123


>gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + + AL+L  + + D+II+DI +  + 
Sbjct: 6   MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIMMPNMD 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y++KP +    +  +K  +
Sbjct: 66  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|209544812|ref|YP_002277041.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532489|gb|ACI52426.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 243

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+E  + + R  +E  GY      +G +AL      +PD++++D  L  +SGL++
Sbjct: 20  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 79

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++++    + +P+I +TA A + D  R    G + Y++KP S+      I+  +  A
Sbjct: 80  CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA 138


>gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 246

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++IV+D++   ++ +  +E++G+      +G E+  +  ++ PD++++DI L  + G+
Sbjct: 24  AKILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIMLPSMDGI 83

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K I+++ E    PVI +TA     D+    + G + Y+ KP      +  +K  +  
Sbjct: 84  DVLKWIRKEHET---PVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRR 140


>gi|313620820|gb|EFR92044.1| transcriptional regulatory protein WalR [Listeria innocua FSL
           S4-378]
          Length = 199

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +    + +  +   G+      +G EALEL  + +PD+I++DI L    G+
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120


>gi|229525275|ref|ZP_04414680.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae bv. albensis VL426]
 gi|229338856|gb|EEO03873.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae bv. albensis VL426]
          Length = 619

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 215 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAMKREKPELVLLDIMMPGMSGYQVC 274

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 275 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 329


>gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU144]
 gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU045]
 gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU028]
          Length = 241

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   + R+G EA ELA ++    I++D+ L E+ 
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
 gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
          Length = 228

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E       +  + +EAL+L  + + D+II+DI +  + 
Sbjct: 1   MESKILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB
           [Psychrobacter sp. 1501(2011)]
          Length = 232

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGL 62
            +++VED     ++    +E SG+  LQ  +  +A      H+P +I++D  L    SG+
Sbjct: 5   TILVVEDEPAIREMIVTTLEMSGFECLQAEDVNDAHNQVVDHRPAMILLDWMLPGNQSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +++K+D  L EIP+I +TA   + ++ +    G + YI+KP S    +  IK  +  
Sbjct: 65  DLCRRLKKDEMLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR 124

Query: 123 A 123
           +
Sbjct: 125 S 125


>gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-3C]
 gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-3C]
          Length = 230

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    +++    +   GY      NG+E +  A++ +P +II+D+ + E+ G+E
Sbjct: 7   KILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKKKQPHLIILDVMMPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++I+    L+   V  +TA      +      G + YI+KPI   + +  +K  +  
Sbjct: 67  ACEKIRATPGLENTIVAFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125


>gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
          Length = 227

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED      +   +++  GY  ++      AL    +  PD+I++D      S
Sbjct: 1   MASRILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQLHEPYPDLILLDWMFPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++   +K+D+ L+ IPV+ +TA   + D+ R  + G + Y++KP S    M  +K  +
Sbjct: 61  GIKLLSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 231

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D     +  +D ++ SG+      N +E  E  + + PD++I D+ + ++ 
Sbjct: 1   MSAQLLLVDDEPGIREAVKDYLQESGFSVQVASNALEGWEWMQMNTPDLVISDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  KQ++ED   Q +PV+ +TA  M GD  +    G +AY+ KP      +  ++  +
Sbjct: 61  GYQFLKQLREDPRFQALPVVFLTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLL 120

Query: 121 GE 122
             
Sbjct: 121 AR 122


>gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3]
 gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 218

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|222085608|ref|YP_002544138.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221723056|gb|ACM26212.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 458

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  L   +G++AL +    + D++++DI +  + 
Sbjct: 2   MTARILVVDDIPANVKLLEARLLAEYFEVLTAEDGLKALAICDSTQVDLVLLDIMMPGMD 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +++K D+    IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 62  GFDVCERLKSDARTSHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 121

Query: 121 G 121
            
Sbjct: 122 R 122



 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+    + +     ++        T +   AL    +   +++I++   ++   L 
Sbjct: 158 HILLVDGRANSQERIVRALKPI-AQVTATSDPQAALFEVAEKPFELVIVNSNFEDYDPLR 216

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +PV+ VT         R    G   YI +P+  +  +      I  
Sbjct: 217 LCSQLRSLERTRFLPVLLVTEQGADEMIVRALDLGVNDYIVRPLDPNELVARSLTQIRR 275


>gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
          Length = 235

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D +L +K  R  +E  G       +G EA+ELA++ + D++++D+ L +  G
Sbjct: 1   MARVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVMLPKYDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E     ++P+I +TA     D+    + G + YISKP ++      IK  I 
Sbjct: 61  YEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|87303913|ref|ZP_01086579.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87281609|gb|EAQ73617.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 248

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALEL     PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 240

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D++   +L ++ +  +G+  L   +G+E  +      P++II+DI +    G 
Sbjct: 5   KPILIVDDDQEIRELLKEYLTRAGFDVLTACDGVEMYQQLALSTPELIILDIMMPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +QI+  S+   +P+I +TA + + D     + G + YI+KP S    M  IK  +  
Sbjct: 65  SLCQQIRRKSQ---VPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRR 121

Query: 123 A 123
           A
Sbjct: 122 A 122


>gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 223

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+V++V+D+ L++K+    +   GY      +G+E L L  Q +PDV++ D+ + E+ G
Sbjct: 1   MKRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQEQPDVVVSDVVMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  +Q+++    + +P I +++ +   D  +  + G + YI KP      +  I+  I 
Sbjct: 61  FEFCRQLRQQRGGELVPFIFLSSRSELDDRVQGYEWGADDYIIKPFEPLELVAKIEAQIE 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
 gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
          Length = 234

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D +    + +  +   GY      +G EA++   +  PD++I+D+ L +  
Sbjct: 1   MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++  +L    +I VTA A + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus
           iners AB-1]
 gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
 gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
          Length = 234

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D +    + +  +   GY      +G EA++   +  PD++I+D+ L +  
Sbjct: 1   MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++  +L    +I VTA A + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 218

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|86357267|ref|YP_469159.1| response regulator PleD [Rhizobium etli CFN 42]
 gi|86281369|gb|ABC90432.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 457

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  +   +G EAL +  +++ D+I++DI +  I 
Sbjct: 1   MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERNQVDLILLDIMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K   +   IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 61  GFEVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     +++     +   +   AL  A ++  D++I++    +   L +
Sbjct: 158 VLLVDGRANSQERIVKALKSV-ADVVALSDPQAALFEAAENTFDLVIVNANFDDYDPLRL 216

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + +P++ +T         R    G   Y+ +P+  +  +      I  
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADDMVVRALDLGVNDYLIRPVDPNELVARSLTQIRR 274


>gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169]
 gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1]
 gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1]
 gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1]
 gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1]
 gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7]
 gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8]
 gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1]
 gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72]
 gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E]
          Length = 244

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     L +  +E  GY+     +G +  +L  +    +I++D+ L +  
Sbjct: 8   MTHRILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPDED 67

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ I K+++ ++    IP+I +TA     D     + G + Y+ KP +    +  IK  +
Sbjct: 68  GIAICKRLRAEN--SSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
 gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
          Length = 229

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+   +  +   A+       PD++++D  +   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +K DS  +++PV+ +TA   + D  +  + G + Y+ KP S    +  +K  +
Sbjct: 61  GIQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   ++I +D+    +L    ++  GY  ++  +G +A+E+ +    D++++DI + ++
Sbjct: 1   MKPITILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+     Q +P+I ++A     D+ +    G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRTK---QNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 229

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 67/121 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D +  ++  +  +E  GY      +G+E +E+A++  PD+I+MD+ +  + G+
Sbjct: 7   QTILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQKVSPDLILMDVMMPRMDGI 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + I++D +L+   +  +T+ A    +    + G + YI+KPI   + +  ++  +  
Sbjct: 67  EACQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALLRR 126

Query: 123 A 123
           A
Sbjct: 127 A 127


>gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 218

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115


>gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 218

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115


>gi|219847541|ref|YP_002461974.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
 gi|219541800|gb|ACL23538.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
          Length = 313

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+I +D+     L  D+++ +G+  L   +G   L++A++  PD+I++D+ L  + G E
Sbjct: 9   TVLIADDDPNLRFLLSDMLQRAGFDVLVAEDGSALLQIAQEQLPDIILVDLMLPGVDGYE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +Q++ D+    +P+I VTA     D       G + Y++KP + +  +  I+  +  
Sbjct: 69  AIRQLRNDTRTAHLPIIIVTARTNPADVVIGFDTGADDYVTKPFNEAELIARIRSLLRR 127


>gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 237

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D     +  +  +   GY      +G++AL  A  + PD+I++DIQ+  + GL 
Sbjct: 6   RILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDIQMPRMDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++       +P++ +TA    GD       G + Y+ KP  L      I+  +  +
Sbjct: 66  AARRLRAAGST--VPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 123


>gi|163785606|ref|ZP_02180161.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879126|gb|EDP73075.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 203

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 63/118 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           + +VED+E   +L    ++  G       +G +AL      KPD+I++DI L +I GLE+
Sbjct: 4   IYVVEDDEDINELLVYNLQKEGNKVKSFYSGKDALSSLENEKPDLILLDIMLPDIDGLEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K +K D   +EIP+I +TA + + D+    + G + YI+KP S    +  IK  +  
Sbjct: 64  CKTVKSDPVKREIPIIMLTAKSTEIDKIVGLELGADDYITKPFSFRELLARIKAVLRR 121


>gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
 gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
          Length = 1128

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y+SKP +       I+ ++
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 839


>gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 218

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115


>gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
          Length = 239

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  AL+ A   +PD+II+D+ L ++ 
Sbjct: 1   MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571]
 gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571]
          Length = 238

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 248

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALEL     PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 227

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED++  ++L  + ++   Y+     NG+E ++  ++ K D+II+DI++  + G 
Sbjct: 4   QRILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKFKESKYDMIILDIKMPNLDGH 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              K I+       IP+I +TA + + D+ +  + GC+ YI+KP S ++ ++ ++  +  
Sbjct: 64  TTCKMIR---NTSNIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++ ED+          +   GY      +G+EAL    +  PDVI++D+ +  + 
Sbjct: 1   MTNTVLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + ++ + +    P++ +TA     D       G + Y++KP  +      ++  +
Sbjct: 61  GIQVCRVLRAEGD--RTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|170720670|ref|YP_001748358.1| histidine kinase [Pseudomonas putida W619]
 gi|169758673|gb|ACA71989.1| histidine kinase [Pseudomonas putida W619]
          Length = 785

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  + + ++   G +      G+EALE   Q   D+++MD  +  + G 
Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCVVQVATQGVEALERLEQEDFDLVLMDCNMPVMDGY 723

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E +++I++     E+P++A+TA AM  + ER R  G   Y++KP      +  I  ++
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALIDHWV 781


>gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 266

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+D+    +L  + +  +G+       G +  E       D+I++DI +    G 
Sbjct: 33  KRLLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGHFDLIVLDIMMPGDDGF 92

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+++  S    IP+I +TA A + D     + G + Y+ KP +    +  IK  +  
Sbjct: 93  TLCKEVRTKS---NIPIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRR 149


>gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 231

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    ++  GY  L+  +G EA++ A+ H  D+ I+DI + ++
Sbjct: 1   MKRITILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSVDLAILDIMMPKL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ +QI+E      +P+I ++A     D+      G + Y++KP +    +  +  +
Sbjct: 61  DGYEVIRQIREQ---HHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAH 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|190891316|ref|YP_001977858.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696595|gb|ACE90680.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|327194838|gb|EGE61672.1| two-component response regulator protein [Rhizobium etli CNPAF512]
          Length = 457

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  +   +G EAL +  +++ D+I++DI +  I 
Sbjct: 1   MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERNQVDLILLDIMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K   +   IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 61  GFEVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 83.6 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     ++      L   +   AL  A +H  D++I++    +   L +
Sbjct: 158 VLLVDGRANSQERIVRALKPV-ADVLALSDPQAALFEAAEHAFDLVIVNANFDDYDPLRL 216

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + +P++ +T         R    G   YI +P+  +  +      I  
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIVRPVDPNELVARSLTQIRR 274


>gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 228

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E   ++ +  +ET+GY      +G  A E      P+++++D+ L  I G+E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++DS    +PVI +TA     D+    + G + Y+ KP      +  +K  +  
Sbjct: 67  VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122


>gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 259

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALEL     PD++++D+ + ++ G  
Sbjct: 21  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDGYG 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 81  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 136


>gi|42520116|ref|NP_966031.1| response regulator PleD [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409853|gb|AAS13965.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 460

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D   N+KL    ++   Y  +   +G EA++L  + +PD+I++DI + +++
Sbjct: 1   MTAKILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K++K D     IP+I VTA     D  +    G + +++KPI+ +     IK   
Sbjct: 61  GFEVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 53/118 (44%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++++    +   ++++          + MEAL++  ++  D+II D+Q  +  GL +
Sbjct: 159 VLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + +   E +  P++ ++    K +  +    G   Y++ P+     +  +   +  
Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276


>gi|33866766|ref|NP_898325.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639367|emb|CAE08751.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 262

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++    L    +E SG+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L      +K  +  +
Sbjct: 65  CQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRS 123


>gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
 gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
          Length = 230

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D++   +  R  +  +GY      +G EALE   + +PD+ I+D+ + ++ GL+
Sbjct: 2   KILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMPKLDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ + +  ++PV+ +TA     +       G + Y+ KP +L   +  ++  +  +
Sbjct: 62  VCRRLRSEGD--DLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRS 119


>gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
          Length = 233

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 236

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D +    + +  +E  GY      +G EAL    + +PD+I++DI L    
Sbjct: 1   MDRTILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 231

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           ++K  +++VED+    +L    +  +G+      +G EAL+L  +   D +++D+ L   
Sbjct: 1   MRKPSILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREPIDAMVLDLMLPGK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ + ++    ++ +P+I +TA + + D     + G + Y++KP S  + +  ++  
Sbjct: 61  DGNEVCRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAA 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 231

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED E    L R  +E  G++      G +A  L  +  PD++++D  L  +SG+E+
Sbjct: 3   VLIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWMLPGLSGIEL 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+   E + +PVI +TA   +GD  R    G + YI KP S+   +  I+  +  A
Sbjct: 63  CRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRRA 121


>gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 225

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I++D E+ +K  +  +E  G+      +G E L+  R    D++I+DI L ++ G
Sbjct: 1   MEKLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+       IP+I +TA     D+    + G + Y++KP +       I+  + 
Sbjct: 61  FSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D     +L  + ++ +GYI  +  +G  AL        D++I+D+ +  + G
Sbjct: 1   MAKILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLMMPFMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   ++++        PVI +TA   + D+    + G + Y+ KP S    +  ++  + 
Sbjct: 61  MTCLREMRA--RHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLN 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 227

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I +D     ++ +  +E  G+    T NG EAL   R+  PD+II+D+ L EIS
Sbjct: 1   MSKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+++S    +P+I +TA     D+    + G + Y++KP      +   K  +
Sbjct: 61  GWDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)]
          Length = 256

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    ++    ++ +GY   +  +G EAL  A  H+PD++++D+ L  + GLE
Sbjct: 30  RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 89

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++       +PVI +TA   + D     + G + Y++KP S    +  ++  +
Sbjct: 90  VCRRLRGQGP---VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 143


>gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 249

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D     +  ++ +   G+      N  +A ++ +Q+ P+++I DI + ++ 
Sbjct: 22  MSAKLLLVDDEPGVREAVKEYLAEFGFTVQVASNANDAWQMLQQNTPELVISDIMMPKVD 81

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  +Q+++D   + +PV+ +TA  M  D  +  + GC+AY+ KP      +  ++  +
Sbjct: 82  GYQFLQQLRDDPRFKALPVVFLTARGMTSDRIQGYQAGCDAYLPKPFDPDELVAIVQNLL 141

Query: 121 -GEA 123
              A
Sbjct: 142 ERRA 145


>gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ + +    D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIR---GKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
          Length = 231

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +  +   +G  AL    + +PD++I+D+ L  + G 
Sbjct: 5   QKILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLMLPGMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++ ++    +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREVRRNN---NLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|325298032|ref|YP_004257949.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324317585|gb|ADY35476.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1336

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++V+DNE      R  +E   Y      NG EAL   ++ +PD++I D+ +  + G E+ 
Sbjct: 1089 LVVDDNEDFRLFMRHSLELQ-YRVEVASNGQEALSKIQELQPDLVISDVMMPGMDGNELC 1147

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + IK D     IPVI +TA      + +  + G + Y++KP ++++ +  I+K I
Sbjct: 1148 RLIKGDKRTAHIPVILLTARQAVESKVKGLETGADDYVTKPFNMTVLVLRIRKLI 1202


>gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 249

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++VED      + R  +E  GY      +G+  LE AR  +PD+I++DI L  + GL
Sbjct: 10  AHVLVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAEPDLIVLDIMLPGLDGL 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I ++++   +   +P++ +TA     D       G + Y+ KP S+   +  ++  +  
Sbjct: 70  QICERLRR-EDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IV+D E    L    ++  G+  LQ  NG +AL++ +++  +++++DI +  + 
Sbjct: 1   MNKTILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIFKENTVELVVLDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    K+I++ S+   +PVI +TA A   D+    + G + Y++KP S  + +  +K  +
Sbjct: 61  GWTTCKEIRKISQ---VPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K++  +I +D      L    +E  GY  ++  +G EA+ +      D++++DI + ++
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQSIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---YHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
 gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
          Length = 232

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 75/119 (63%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+I++D    ++L R  +ETSGY  + + +G +    A++ KPD+I++D  L  ISG+E
Sbjct: 7   KVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNISGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I++D++L++IPVI +TA  M+ D+    + G + YI+KP S+   +  I   +  
Sbjct: 67  VLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMRR 125


>gi|162149578|ref|YP_001604039.1| phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788155|emb|CAP57760.1| putative phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+E  + + R  +E  GY      +G +AL      +PD++++D  L  +SGL++
Sbjct: 16  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++++    + +P+I +TA A + D  R    G + Y++KP S+      I+  +  A
Sbjct: 76  CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA 134


>gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 256

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEI 59
           M   ++IVED +  +      ++  GY   +  +G   LE A  +  PD++++D+ L +I
Sbjct: 1   MPTTILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG E+ +Q++     + +PV+ +TA   + D     + G + Y++KP S+   M  ++  
Sbjct: 61  SGTEVCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAI 120

Query: 120 IGEA 123
           +  A
Sbjct: 121 LRRA 124


>gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 252

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALE   +   D++++D+ + ++ G  
Sbjct: 13  TILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPTDLVVLDVMMPKLDGYG 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 73  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 128


>gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 235

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     KL    +E S +  L+  +G  AL+LA    P ++++D+ L ++ G E
Sbjct: 5   KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPDMDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I  +++E     ++P+I ++A     D+    + G + YI KP +       I+  +  
Sbjct: 65  ICARLRE--RHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRR 121


>gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 218

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLESDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|209964834|ref|YP_002297749.1| response regulator With diguanylate cyclase (GGDEF) domain,
           putative [Rhodospirillum centenum SW]
 gi|209958300|gb|ACI98936.1| response regulator With diguanylate cyclase (GGDEF) domain,
           putative [Rhodospirillum centenum SW]
          Length = 482

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    +    +  +    G EAL+  R   PD++++D+ +  + 
Sbjct: 1   MSARVLVVDDVVPNVKLLAAKLTREYFDVITAYGGPEALDKIRSQSPDIVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+ D  +  IPV+ VTA +   D  R  + G + +++KP++       ++  +
Sbjct: 61  GFEVCERIRSDPSVMHIPVVMVTALSDVADRVRGLEAGADDFLTKPVNDVALFARVRSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ ++M   R+ +       ++  N   ALELA     +++I+ + L    GL 
Sbjct: 157 RILVVEDSSIDMDKIRETLARDRDGVVEAENCAAALELALSQDFELVIISLTLMREDGLR 216

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     +++P++ + A     D   +  + G   Y+ KPI  +  M   +  +  
Sbjct: 217 LCSQLRSHERTRQVPILLL-ADETDMDRVAKGLELGANDYVIKPIDRNELMARTRTQVRR 275


>gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
 gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     ++ R  ++ +G+   +  +  EA  +    KPD++++D  L   SG+
Sbjct: 4   KTILIVDDEAPIREMIRMSLDMAGFNCREAADTREAYRVIADSKPDLVLLDWMLPGGSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++++    ++PVI +TA   + ++ +    G + YI+KP +    +  IK  +  
Sbjct: 64  ELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKALLRR 123


>gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 225

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K++I +D     KL  D ++  G+  L+ +NG EAL++    +  D+II+DI + E+ G 
Sbjct: 5   KILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQSIDLIILDIMMPELDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +QI++ S    +PVI +TA + + DE      G + YI+KP S  I +  ++  +  
Sbjct: 65  SVCRQIRKSSR---VPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+    +L    +    Y  +   +G EAL +  + KP+++++D+ L  + G 
Sbjct: 5   QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPEFKPNLVLLDLMLPGMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++      ++PVI ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCRELRS---GSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|87125186|ref|ZP_01081032.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166955|gb|EAQ68216.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 175

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +L    +E +G+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDRDMRELVGGHLEHNGFDVQRAEDGIKGQALALQYSPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L      IK  +  +
Sbjct: 65  CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123


>gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 736

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 72/121 (59%), Gaps = 2/121 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +LN +     +   G+      NG EAL+L  +   DV++MD+Q+ E+ GLE
Sbjct: 610 RILLAEDEQLNREFVTFFLLGEGHTVTTATNGCEALDLLERQDFDVVLMDVQMPELDGLE 669

Query: 64  ITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T++I+  E  +   +P+IA+TA+AMK D ER+   G + Y+SKP+ +     ++ + + 
Sbjct: 670 ATRRIRSLEKPDKAHVPIIALTAYAMKEDRERVMAAGMDDYLSKPLDMDELRRSLARILA 729

Query: 122 E 122
           E
Sbjct: 730 E 730


>gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 242

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA+E   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IVED+   +K  +  +    Y  +   +G +ALE+AR+ KPD+I++DI L ++S
Sbjct: 1   MQNKVLIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIMLPKLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + ++++      P++ +TA A + D+    + G + Y++KP S+   +  ++  +
Sbjct: 61  GFEVCRILRKEMNS---PILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAML 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074]
 gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D        R  +   GY      +G++ALE A  ++PD+I++DIQ+  + GL
Sbjct: 13  QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDIQMPRMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++   +   +P++ +TA    GD       G + Y+ KP  L      ++  +  
Sbjct: 73  TAARRVRAAQDT--VPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 130

Query: 123 A 123
           +
Sbjct: 131 S 131


>gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51]
 gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 225

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+MIV+D+    +L   L++  G+   + R+G EALE   +  P + ++D+ +  + G
Sbjct: 1   MSKIMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKISEANPSLAVIDLMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++    +++PV+ +TA   K  + +  + G + Y++KP      +  +K  + 
Sbjct: 61  YELCRQLRQY--YKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|186681683|ref|YP_001864879.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464135|gb|ACC79936.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 475

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N+++  + +  +G+  L   NG  A+  A    PD+I++D+ +  I G   
Sbjct: 11  ILIVDDNPNNLEVLSETLMDTGWEILIAVNGEGAIAQAEYACPDIILLDVMMPGIDGFTA 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +    +IP+I +TA +   D+ +    G   YI+KP      +  IK ++
Sbjct: 71  CQRLKSNPVTCDIPIIFMTALSETVDKVKGLSLGAVDYITKPFEHEEVLARIKTHL 126


>gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635]
 gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635]
          Length = 244

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  NG EA +LA ++    I++D+ L E+ 
Sbjct: 4   MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPEMD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 64  GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 230

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+D +  ++L    ++  GY      NG EA+  A++  PD+II+D+ + ++ G+
Sbjct: 6   QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + ++   E +   ++ +TA + +  E      G + YI+KPI     M  I   +  
Sbjct: 66  EACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRR 125


>gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 66/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D  +N ++  +++E +G+      NGMEALE  ++H  D++IMDIQ+  + GL  
Sbjct: 729 VLLVDDEPINREVAAEILEDAGFDVTLASNGMEALERLQRHPVDLVIMDIQMPGMDGLTT 788

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I++  +   +P+IA+TA A   DE      G  A+I KPI        +   +  
Sbjct: 789 TRRIRQMPDRAHLPIIAMTANAFAEDETECLNAGMNAFIPKPIDPERLYRIVLSCLDR 846


>gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D    + L    +  SG+  L    G +AL   R+  PD++++D+ L ++SG
Sbjct: 1   MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QIK D   + +PV+ +TA   + D     + G + Y++KP S+   +  +K  + 
Sbjct: 61  TEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 234

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D +  + L    +E +G+  L   +G EA+E     +P  II+D+ L ++ 
Sbjct: 1   MCKKVLVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ+++   +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCKQLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 240

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E   +L +  +E   +   + ++G EAL++A       I++D+ L E+ G
Sbjct: 1   MTKILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  + 
Sbjct: 61  IEVANRLRE---YKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 234

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 71/119 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E  ++L +  +  +GY  L + NG++AL++A+   P +I++D+ L  + G +
Sbjct: 5   KILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMENPKLILLDLMLPGLDGFD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K++K+D E Q I +I +TA   + D+    + G + YI+KP S+   +  +K  +  
Sbjct: 65  VCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123


>gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1210

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED+ +N ++   ++E  GY      NG +AL  A +   D+++MD Q+ E+ GL 
Sbjct: 934  RILLAEDSPVNREVAVGMLEQLGYEVEVAENGRQALAAAERDHFDIVLMDCQMPEMDGLT 993

Query: 64   ITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T +I+     S  + +P+IA+TA AM+GD E     G + Y+SKP +       ++K++
Sbjct: 994  ATGEIRRRETASGRRRLPIIALTAHAMQGDREHCLTAGMDDYLSKPFTQMQLQGIVRKWL 1053


>gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+ L ++  R  +E +G+      +G EA  LA +H+PD++++D  L  + GL +
Sbjct: 14  ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++ ++       PV+ +TA   +    R   GG + Y+ KP S    +  ++  +  A
Sbjct: 74  CERWRKGEYFA--PVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRA 130


>gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 240

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 65/126 (51%), Gaps = 4/126 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQE 58
           M K+++++ED+    +L  D +  + Y       G E L+L   ++   D++++D+ L +
Sbjct: 1   MSKQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPD 60

Query: 59  ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G+++ ++I+  +++   ++P+I +TA     D     + G + YI+KP      +  I
Sbjct: 61  MDGMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120

Query: 117 KKYIGE 122
           +  I  
Sbjct: 121 RAVIRR 126


>gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
          Length = 237

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   +  PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|22299208|ref|NP_682455.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22295390|dbj|BAC09217.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 288

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 63/117 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D   N+++   L++  GY      +G  AL       PDVI++DI + ++ G E
Sbjct: 12  RILIVDDTPENVEVLTTLLQLEGYDVRGAISGQMALMGIEAEPPDVILLDIMMPDMDGYE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K++ + + IP+I ++A     D+ +  + G   YI+KP   +  +  +K  +
Sbjct: 72  LCQTLKQNPKTKHIPIIFISALDDVFDKVKAFEIGGADYITKPFQQAEVLARVKNQL 128


>gi|17228424|ref|NP_484972.1| two-component system, regulatory protein [Nostoc sp. PCC 7120]
 gi|75906731|ref|YP_321027.1| response regulator receiver domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|17130275|dbj|BAB72886.1| two-component system, regulatory protein [Nostoc sp. PCC 7120]
 gi|75700456|gb|ABA20132.1| Response regulator receiver domain protein (CheY) [Anabaena
           variabilis ATCC 29413]
          Length = 121

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 71/120 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED+    ++  DL++ SG       +G+EALE  ++  PD++++DI + +++G
Sbjct: 1   MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEPPDLVVLDIVMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + Q +PV+  ++   + D     K G +AYI+KP   +  + T+K+ + 
Sbjct: 61  YEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120


>gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 237

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  Q+K +++I+D+ + +I
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 249

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D+   ++L    +E SGY   +  +G++   LA Q  PD+I++D+ L  + 
Sbjct: 1   MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++++ D    EIPV+ +TA     D+      G + Y++KP  +   +  ++  +
Sbjct: 61  GFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 120

Query: 121 GE 122
             
Sbjct: 121 QR 122


>gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 230

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+   +++ R  IE +G+      +G+ A+   R+  PD++++DI L E  
Sbjct: 1   MSARILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAIAAQRRDAPDLVVLDIGLPEKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I++ S   ++P++ +TA   + D     + G + Y++KP S    +  IK  +
Sbjct: 61  GLEVCRDIRKSS---DVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 241

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D    + L    ++ + +      NG++AL +A   + D++++D+ L ++SG
Sbjct: 1   MKKVLVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLMLPQMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++ D    + PVI +TA   + D+    + G + YI KP S    +  I   + 
Sbjct: 61  EQVLKQLRMDRN--DTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|313499963|gb|ADR61329.1| Histidine kinase [Pseudomonas putida BIRD-1]
          Length = 785

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  + + ++   G        G EALEL  + + D+++MD  +  + G 
Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGY 723

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E +++I++     E+P++A+TA AM  + ER R  G   Y++KP      +  +  ++
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHWV 781


>gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR
 gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 233

 Score =  163 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L    +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|291566271|dbj|BAI88543.1| adenylate cyclase [Arthrospira platensis NIES-39]
          Length = 438

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 67/117 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N+ L  DL+   GY      +G  A+E+A+ H+PD++++D+ + +++G E
Sbjct: 7   HILLVDDEPANLVLLEDLLMAEGYNTTLAESGSRAIEIAQNHRPDLVLLDVMMPDMNGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  +++E+  LQ  P+I +TA   +       +   + YI+KP ++ + +  I+  +
Sbjct: 67  VCDRLRENPILQTTPIIFLTALDDEESRLMGLQTMGDDYITKPFNIKLLLAKIQNIL 123


>gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 240

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E   +L +  +E   YI  +  NG +ALE A ++  DVI++D+ L    G+E
Sbjct: 8   KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDYDVILLDLMLPGRDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 68  VCKGIREK---KATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRA 124


>gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +    ++   GY      NG   LELA+++  D++I+D  L + SGL+
Sbjct: 2   RILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWMLPQQSGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I + +++  +    PV+ +TA     D       G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQYLRDQGDT--TPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRS 119


>gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
 gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 235

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + L    +E +G+  +   +G EAL      +P +II+D+ L ++ 
Sbjct: 1   MGRKILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K++++   +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVDVCKRLRQQQIM--TPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +    + +  ++  G+      NG+ AL L +++  D++++D+ L  +SG E
Sbjct: 2   RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENSYDLVLLDLMLPGLSGEE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I++ S     PVI +TA     D  +    G + YI KP S    +  IK  +  
Sbjct: 62  ICREIRKISAT---PVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRR 117


>gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system
           with phor [Ralstonia solanacearum CFBP2957]
 gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CFBP2957]
          Length = 237

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   S
Sbjct: 1   MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K+++ +   ++IP+I +TA + + D+      G + Y++KP S    +  IK  +
Sbjct: 61  GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
 gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
          Length = 265

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED      L    +E  G++  +   G EA     +  PD++I+D  L  +SGLE
Sbjct: 29  RILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMPDLVILDWMLPGVSGLE 88

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++     + +PVI +TA   + +  R    G + Y+ KP S+   M  ++  +  A
Sbjct: 89  ICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRRA 148


>gi|26988605|ref|NP_744030.1| histidine kinase [Pseudomonas putida KT2440]
 gi|24983381|gb|AAN67494.1|AE016376_4 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 785

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  + + ++   G        G EALEL  + + D+++MD  +  + G 
Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGY 723

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E +++I++     E+P++A+TA AM  + ER R  G   Y++KP      +  +  ++
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHWV 781


>gi|330808379|ref|YP_004352841.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376487|gb|AEA67837.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 773

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 63/117 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + ++   G       +G EAL+   Q   D+++MD  +  + G E
Sbjct: 651 RVLLVEDNPVNQLVAKGMLVKLGCEVTVAAHGGEALDQLEQRVFDLVLMDCNMPVMDGYE 710

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++QI++     ++P++A+TA AM  + ER R  G   Y+SKP         + +++
Sbjct: 711 ASRQIRQSGRWSDLPIVALTANAMPEERERCRAAGMNDYLSKPFRREELAAVLDQWV 767


>gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 237

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++ +D     ++    +   G++ +   +G EAL++ +  +PD+II+D+ + +++G 
Sbjct: 6   QKILVADDEASIRRILETRLSMMGFVVITAADGEEALQVFQHQEPDLIILDVMMPKLNGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + ++++S   ++P+I +TA +   D     + G + Y+ KP S       I+  +  
Sbjct: 66  QVCQSLRQES---DVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRR 122


>gi|153216364|ref|ZP_01950429.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
 gi|124114317|gb|EAY33137.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
          Length = 773

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 369 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 428

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 429 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 483


>gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus helveticus H10]
          Length = 238

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|253570096|ref|ZP_04847505.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251840477|gb|EES68559.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1450

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE      ++++ +  Y  +   NG E  + A  + PD+II D+ +  + GLE
Sbjct: 1192 TILVVEDNEELKTFLKNIL-SENYTVITASNGKEGWQHAVDNIPDLIISDVMMPVMDGLE 1250

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +QIKE++ +  IP+I ++A A   D     + G + YI+KP S +     I   + +
Sbjct: 1251 MIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309


>gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 246

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  R  +   GY      +G +AL +A  + PD+I++DIQ+  + GL
Sbjct: 9   QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+        P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 69  TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126


>gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
 gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D +L +K  R  +E  G       +G EAL+L+R++  D+I++D+ L +  
Sbjct: 1   MSKRVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVMLPKYD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +QI+E     ++PV+ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFQVCQQIRE---FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|49081910|gb|AAT50355.1| PA4381 [synthetic construct]
          Length = 228

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++D+ L  I G  
Sbjct: 2   RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120


>gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551]
 gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
 gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551]
 gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
          Length = 237

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   S
Sbjct: 1   MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   K+++ +   ++IP+I +TA + + D+      G + Y++KP S    +  IK  +
Sbjct: 61  GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 228

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 56/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K+++V+D      +    +E+ GY      +G+EAL +   + PD++I D+ +  + G
Sbjct: 1   MQKILVVDDELDCQAVLAIYLESRGYQVECASSGLEALSIFESNPPDLVISDVMMPHMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++++     Q +P I ++       +      G + Y+ KP      +  +K  + 
Sbjct: 61  FEFCRRLRSSRLGQLVPFIFLSGQGELESKVEGHSIGGDDYLVKPFQPKEILAKVKGQLE 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 233

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + ++++V+D E   +L R  +E +G+   +  +G EAL  A      +II+D+ L  +
Sbjct: 1   MAQTRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAYALIILDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++  QI++ S    +P++ +TA   + +     + G + Y+ KP S    +  +K  
Sbjct: 61  DGRDVCAQIRQHS---NVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAM 117

Query: 120 IGE 122
           +  
Sbjct: 118 LKR 120


>gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 902

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 73/118 (61%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ ED+++N ++   +++          NG EA++L  +++ D+I+MD+Q+ E+ G+E 
Sbjct: 667 ILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFEENEFDLILMDVQMPEMDGIEA 726

Query: 65  TKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           TK+I++  E   + IP+IAVTAFA + D E+I + G + YISKP S       I + +
Sbjct: 727 TKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMDDYISKPFSFDDIYAAINRVL 784


>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 230

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    +  R  +  +GY     ++G+EAL+    ++PD +I+D+ +  + 
Sbjct: 1   MAVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +
Sbjct: 61  GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|297580749|ref|ZP_06942675.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
 gi|297535165|gb|EFH74000.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
          Length = 1177

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 61/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G + LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 833 VKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887


>gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 248

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALE  ++ +PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALECFQECEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125


>gi|92117963|ref|YP_577692.1| response regulator PleD [Nitrobacter hamburgensis X14]
 gi|91800857|gb|ABE63232.1| response regulator receiver modulated diguanylate cyclase
           [Nitrobacter hamburgensis X14]
          Length = 457

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    +    +  +   NG +ALE+  + K D++++DI + ++ 
Sbjct: 1   MSARVLVVDDIPANVKLLEARLSAEYFDVMTASNGAQALEICARAKCDIVLLDIMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPV+ VTA     D  R  + G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 86.3 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    ++    +      +  EAL  A ++  D++I+ + L+   GL 
Sbjct: 157 RILLVDDRASSYERLASVLSAE-HTVDVETDPSEALFHAAENSYDLLIVSLGLENFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++A+ A A       R  + G   Y+ +P+  +  + 
Sbjct: 216 LCSQARSLERTRHVPILAI-ADANSNTRLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103]
 gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103]
          Length = 267

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL L   +  D++++D+ + + +G
Sbjct: 36  MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKNG 94

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++  +    PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 95  IDTLKELRQQYQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 151

Query: 122 EA 123
            +
Sbjct: 152 RS 153


>gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + ++++V+D E   +L R  +E +G+   +  +G EAL  A      +II+D+ L  +
Sbjct: 1   MAQTRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAYALIILDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++  QI++ S    +P++ +TA   + +     + G + Y+ KP S    +  +K  
Sbjct: 61  DGRDVCAQIRQHS---NVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAM 117

Query: 120 IGE 122
           +  
Sbjct: 118 LKR 120


>gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 225

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED        R  +   GY      +G++ LE+A     D++++D+ L  I G
Sbjct: 1   MTRILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNYDLVVLDLMLPVIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+       +P+I +TA     D     + G + Y+ KP +    +  I+  + 
Sbjct: 61  FEVARRIRA---ASNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|17231412|ref|NP_487960.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133054|dbj|BAB75619.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 414

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KV++V+D+  +      L+   GY  ++  +G  A++L  Q +PD+I++D+ + E+ G
Sbjct: 93  SPKVLVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQQPDLILLDVMMPEMDG 152

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ + +K+D   + IPVI +TA   +    R  + G + ++SKP      +  +K  +
Sbjct: 153 FEVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLV 211


>gi|58698225|ref|ZP_00373145.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630041|ref|YP_002726832.1| response regulator PleD [Wolbachia sp. wRi]
 gi|58535252|gb|EAL59331.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592022|gb|ACN95041.1| response regulator PleD [Wolbachia sp. wRi]
          Length = 458

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D   N+KL    ++   Y  +   +G EA++L  + +PD+I++DI + +++
Sbjct: 1   MTAKILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K++K D     IP+I VTA     D  +    G + +++KPI+ +     IK   
Sbjct: 61  GFQVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 51/118 (43%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+++    +   ++++          + +EAL++  +   D+II D+Q  +  GL +
Sbjct: 159 ILVVDEDVFQAEQIYNVLKQRFRSIKILSDPIEALKVGIKDNYDLIISDMQFSKTDGLRL 218

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +   E +  P++ ++    K +  +    G   Y++ P+     +  +   +  
Sbjct: 219 CSGFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276


>gi|307317852|ref|ZP_07597290.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti AK83]
 gi|306896614|gb|EFN27362.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti AK83]
          Length = 455

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  L   +G  AL    +   D++++DI +  + 
Sbjct: 1   MTARILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPVDLVLLDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +S    IPV+ +TA     D  R  K G + +++KP++    M  +K  +
Sbjct: 61  GFEVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     ++          +   AL  A +   D+II++    +   L +
Sbjct: 156 VLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFKAAESSFDLIIVNANFDDYDPLRL 214

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + IP++ VT         R  + G   YI +P+  +  +      I  
Sbjct: 215 CSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272


>gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 238

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|86749533|ref|YP_486029.1| response regulator PleD [Rhodopseudomonas palustris HaA2]
 gi|86572561|gb|ABD07118.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris HaA2]
          Length = 457

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  +   NG +ALE+  + + D++++D+ + ++ 
Sbjct: 1   MSARILVVDDIPANVKLLEARLSAEYFDVVTAANGAQALEICDRAECDIVLLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K + +   IPV+ VTA     D  R  + G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    L+    +      N  EAL  A +   D++I+ + L+   GL 
Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEPNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++A+ A A       R  + G   Y+ +P+  +  + 
Sbjct: 216 LCSQARSLERTRHVPILAI-ADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|33860688|ref|NP_892249.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633630|emb|CAE18587.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 251

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+    +L    +E SG+   +  +G++   LA Q+ PD+I++D+ L  + 
Sbjct: 1   MKISILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D     IP++ +TA     D+      G + YI+KP  L      IK  +
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELYVRIKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 230

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED+   ++L    +    Y   +  +G   L LA ++  D+I++D+ L  + G
Sbjct: 1   MKQILIIEDDPEIIQLLEIHLTDMVYTTTKAMDGETGLNLALENDYDLILLDLTLPIMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K+++     +  PVI +TA + + D     + G + Y++KP S+   +  IK  + 
Sbjct: 61  IEVCKKLR---IKKNTPVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|300868441|ref|ZP_07113062.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333575|emb|CBN58250.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 382

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   N+ L + ++E  GY      NG  AL    Q  PD++++D+ +  + G E
Sbjct: 14  RILVVDDAPDNVLLVQTILEDEGYEISSAENGFSALAQIEQSPPDLVLLDVMMPGMDGYE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+++ +L  IP++ +TA        +    G + +I KP+ +   +  ++  + 
Sbjct: 74  VTQRIRQNEKLPFIPILLITAHDQPS-VVQGLDTGADDFIRKPVEMDELLARVRSLLR 130


>gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
 gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 246

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++V+D     +  +  +E S +I     N     EL +Q+ PD++I DI + E+ G
Sbjct: 19  SPRLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQNLPDLVITDIMMPEVDG 78

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI- 120
            +  +Q++ D + + +PV+ +TA  MKGD  +  + GC+AY+SKP      +  +K  + 
Sbjct: 79  YQFLEQMRSDPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLE 138

Query: 121 GEA 123
             A
Sbjct: 139 RRA 141


>gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 233

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++    L    +E  G    +  + ++AL+L  + + D+II+DI +  + 
Sbjct: 6   MESKILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIMMPNMD 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+ED   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 66  GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|189468013|ref|ZP_03016798.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM
            17393]
 gi|189436277|gb|EDV05262.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM
            17393]
          Length = 1451

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN         ++ +  Y  ++  NG E LE A++H PD+II DI +  + GL++
Sbjct: 1192 ILIVEDNMELRSFLHTIL-SENYKVIEAINGQEGLERAQEHVPDLIISDIMMPVMDGLDM 1250

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IKE+ E+  IP+I ++A +   D     + G + YI+KP S +     IK  +
Sbjct: 1251 VKNIKENREICHIPIILLSAKSSLDDRISGLEQGIDDYITKPFSATYLKARIKSLL 1306


>gi|145301083|ref|YP_001143924.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853855|gb|ABO92176.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 240

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++IV+D++   +L  + +  +G+  L    G E  +    H PD+II+DI +    G
Sbjct: 4   SKQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLALHSPDLIILDIMMPGDDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +QI+ DS+   +P+I +TA + + D     + G + YI+KP S       IK  + 
Sbjct: 64  FTLCQQIRRDSQ---VPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
           ATCC 27405]
 gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
           ATCC 27405]
 gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           1313]
          Length = 902

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 73/118 (61%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ ED+++N ++   +++          NG EA++L  +++ D+I+MD+Q+ E+ G+E 
Sbjct: 667 ILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFEENEFDLILMDVQMPEMDGIEA 726

Query: 65  TKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           TK+I++  E   + IP+IAVTAFA + D E+I + G + YISKP S       I + +
Sbjct: 727 TKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMDDYISKPFSFDDIYAAINRVL 784


>gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 223

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVED      L RD  +  G+  L+  +G EAL +  ++  D+ I+DI + ++ 
Sbjct: 1   MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+E   +   P+I +TA + + D+    + G + Y++KP S  + +   K  +
Sbjct: 61  GLAVCRNIRE---VSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|99035891|ref|ZP_01314942.1| hypothetical protein Wendoof_01000220 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 460

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D   N+KL    ++   Y  +   +G EA++L  + +PD+I++DI + +++
Sbjct: 1   MTAKILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K++K D     IP+I VTA     D  +    G + +++KPI+ +     IK   
Sbjct: 61  GFEVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 83.6 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 53/118 (44%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++++    +   ++++          + MEAL++  ++  D+II D+Q  +  GL +
Sbjct: 159 VLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + +   E +  P++ ++    K +  +    G   Y++ P+     +  +   +  
Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276


>gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 229

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 58/122 (47%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D      +    +    +  +   +  EA        PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++ +++S  +EIP+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
 gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
          Length = 229

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 64/118 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +E  G+I     +G EAL L  +  PDVI++D  L  +SG+E+
Sbjct: 8   VLVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEALMLIDEVAPDVIVLDWMLPNVSGIEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q K  +  + IP+I ++A + + D  R  + G + Y+ KP S+   M  ++ ++  
Sbjct: 68  CRQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRR 125


>gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
 gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
          Length = 229

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+I+ED     ++    +E  G+  ++  NG E L L  +  PD+I++D  +  +SG+E
Sbjct: 7   TVLIIEDELAQREVLAYNLEADGFRVIRAENGEEGLLLVEEDMPDIIVLDWMMPNLSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K   E + IP+I ++A + + D+ R  + G + Y+ KP S+   M  ++  +  
Sbjct: 67  VCRRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125


>gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 237

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IVED ++        +E   Y+     +G  A+E   +H  D++I+D+ L ++SG 
Sbjct: 6   KKILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKHAFDLVILDLMLPKLSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+   +   +P+I +TA     D     + G + Y+ KP S    +  ++     
Sbjct: 66  RVCRAIR---DTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRR 122


>gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
 gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
          Length = 250

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VED +         +E  GY  +   +G  A+E   +H+ D+I++D+ L ++SG 
Sbjct: 17  RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 76

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+   +  ++P+I +TA     D     + G + Y+ KP S    +  ++     
Sbjct: 77  RVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRR 133

Query: 123 A 123
           A
Sbjct: 134 A 134


>gi|71908424|ref|YP_286011.1| PAS [Dechloromonas aromatica RCB]
 gi|71848045|gb|AAZ47541.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1023

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 72/119 (60%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VED  +N ++  ++++  G +     +G +AL++ ++   D+I+MD+Q+ +++G+E
Sbjct: 899  RVLLVEDEPINQEVATEMLKEIGLVVDLATDGEQALDMVQRTGYDLILMDLQMPKMNGIE 958

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T+ I++     E+P++A+TA A   D +R    G   +I KP+   +  E + K++G 
Sbjct: 959  ATQAIRQLPAGAEVPIVAMTANAFTEDRQRCLDAGMNDHIGKPVDPELLFEILLKWLGR 1017


>gi|15965047|ref|NP_385400.1| response regulator PleD [Sinorhizobium meliloti 1021]
 gi|307301119|ref|ZP_07580888.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti BL225C]
 gi|15074226|emb|CAC45873.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Sinorhizobium meliloti 1021]
 gi|306904074|gb|EFN34660.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti BL225C]
          Length = 455

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  L   +G  AL    +   D++++DI +  + 
Sbjct: 1   MTARILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPVDLVLLDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +S    IPV+ +TA     D  R  K G + +++KP++    M  +K  +
Sbjct: 61  GFEVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     ++          +   AL  A +   D+II++    +   L +
Sbjct: 156 VLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFEAAESSFDLIIVNANFDDYDPLRL 214

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + IP++ VT         R  + G   YI +P+  +  +      I  
Sbjct: 215 CSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272


>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
 gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
          Length = 2241

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 73/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V++VEDNELN ++    +E SG +     NG +ALE  ++   DV++MD+Q+  + G+
Sbjct: 1905 KRVLLVEDNELNSRVVLGYLEESGVMLDMAENGQQALEKVQEVHYDVVLMDLQMPIMDGI 1964

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T++I+   + + +P++A+TA A   D++R  + G   YI+KP+ +      +K+++
Sbjct: 1965 TATRKIRAVFDEKTLPIVAMTAHASVEDKQRCLEAGMNDYITKPVDIDELYGVMKRHM 2022



 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
            +V++V+D+ +  +    +++  G         +EALE  R+        DV++M+  L  
Sbjct: 1760 RVLVVDDSNIARRAIVYMLKEIGVQCDDVGAPIEALECIREGNGASTNYDVLLMERYLAG 1819

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +  L+  ++IK++S  + +  I V++F+ +  +        +  + KP+ LS   + +
Sbjct: 1820 VDCLDTIRKIKKESSNKNLTSIIVSSFSDEEKQLLSVDRDIDDVLDKPVDLSSLRQAL 1877


>gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1111

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 768

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y+SKP +       I+ ++
Sbjct: 769 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 822


>gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 1111

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 768

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y+SKP +       I+ ++
Sbjct: 769 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 822


>gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 233

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IV+D+     +    ++ +GY      +G  AL  A   +PD++++D+ L  ++G
Sbjct: 1   MARVLIVDDDPTVADVLSRYLQRAGYEVDLAADGHAALATAAATRPDLVVLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E      +PV+ +TA   + D     + G + Y++KP S       ++  + 
Sbjct: 61  LEVCRRLRE---TGSVPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
 gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
          Length = 233

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E    L R  +E  GY       G EA    R+  PD++++D  L  +SG
Sbjct: 1   MPKVLIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEAEIRLRESLPDLLLLDWMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++   + + +PVI +TA   + +  R    G + Y+ KP S+   M  ++  + 
Sbjct: 61  IELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 242

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA+E   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEEYNPDLLILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 248

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY      +G EAL++    +PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIFHNCEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED +   +L +  +E +GY  L   NG  AL        D++++D+ L E+ G
Sbjct: 1   MAKILVVEDEKNIRELIKFNLENAGYEVLTAENGKIALNSLEAE-IDLVVLDLMLPEVDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +Q++ + +L++IP+I +TA   + +     + G + Y++KP S    +  IK    
Sbjct: 60  MEVCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
 gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
          Length = 244

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D +    + +  +   GY      +G EA++   +  PD++I+D+ L +  
Sbjct: 11  MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++  +L    +I VTA A + D+    + G + Y++KP S    +  +K  +
Sbjct: 71  GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 127

Query: 121 GE 122
             
Sbjct: 128 RR 129


>gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 241

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  NG EA ELA ++    I++D+ L E+ 
Sbjct: 1   MANEILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +++E    +E P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEVASKLREH---KETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 228

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D    +++    ++  GY      NG E ++ A++ KPD+II+D+ +  + G+
Sbjct: 6   AKILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKKPDLIILDVMMPVMDGI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  +QI++  EL +  +  +TA             G + YI+KPI   + +  +K  +  
Sbjct: 66  EACEQIRKIPELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKVKSLLRR 125


>gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170]
 gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170]
          Length = 228

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M KK   +++V+D    +++    + + GY      NG+E +  A++ +P +II+D+ + 
Sbjct: 1   MKKKDIKILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKKKQPHLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  + I++   L++  +  +TA      +    + G + YI+KPI   + +  +K
Sbjct: 61  EMDGIEACEIIRKTVGLEDTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
          Length = 244

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D +    + +  +   GY      +G EA++   +  PD++I+D+ L +  
Sbjct: 11  MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++  +L    +I VTA A + D+    + G + Y++KP S    +  +K  +
Sbjct: 71  GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 127

Query: 121 GE 122
             
Sbjct: 128 RR 129


>gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
 gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
          Length = 227

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M +  V+++ED     ++    ++  GY     ++G + L +  +  PDVI++D  L  +
Sbjct: 1   MTQPHVLVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGLLMVEEDAPDVIVLDWMLPHV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ +Q+K  S  + IP+I ++A + + D+ R  + G + Y+ KP +++  M  ++  
Sbjct: 61  SGIEVCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQ 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas
            ingrahamii 37]
          Length = 1574

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 10/128 (7%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             K+++V+DNE+N ++ R+ +E +G +     NG EA+   + H  D ++MD+Q+ EI G 
Sbjct: 1221 AKILLVDDNEINRQVAREFLENAGLLVTTATNGREAVNSVKSHVFDAVLMDVQMPEIDGY 1280

Query: 63   EITKQIKEDSELQ----------EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
            E T++I+   + +           +P+IA+TA AM+GD+ER    G   Y++KPI     
Sbjct: 1281 EATQKIRRWEKTRVDLQPTDGSPVLPIIAMTAHAMEGDKERCLAAGMNDYVTKPIDTRQL 1340

Query: 113  METIKKYI 120
             E + ++I
Sbjct: 1341 FEALSRWI 1348



 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 5/121 (4%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQEISG 61
            ++V+DN + +K+   ++    +    T +G +AL +       +  D+ I+D Q+  I G
Sbjct: 1075 LVVDDNPVTLKVIEKMLIHLKFNVTTTESGEKALSVLENALGNNTVDLAIIDWQMGGIDG 1134

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +E  K+IKE+  + ++P++ ++     G   ++ ++ G ++++ KP++ SI +ETI    
Sbjct: 1135 IETAKKIKENPSIPKMPMVLMSGSDRDGLLGQKSKQVGFDSFVLKPVNRSILVETILTVF 1194

Query: 121  G 121
            G
Sbjct: 1195 G 1195


>gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
 gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
          Length = 232

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 3/125 (2%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-E 58
           +K   +++VED     ++    +E +G+  LQ     +A  L   H+P++I++D  L   
Sbjct: 1   MKNETILVVEDEPAIREMIVTTLEMAGFDCLQASEVSQAHHLVVDHRPNLILLDWMLPNG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+++ +++K+D  L EIP+I +TA   + ++ +    G + YI+KP S    +  IK 
Sbjct: 61  LSGIDLCRRLKKDEMLSEIPIIMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIKA 120

Query: 119 YIGEA 123
            +  +
Sbjct: 121 VLRRS 125


>gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
 gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
          Length = 230

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D++   +L R  +E  GY  + + +G EAL      KPD +++D+ L  + G +
Sbjct: 5   KILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNALKPDFVLLDVMLPGLDGWQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S    +PVI +TA     D+    + G + Y+ KP      +  IK     
Sbjct: 65  VCREIRKKS---NVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRR 120


>gi|48374222|gb|AAT41921.1| putative chemotaxis protein [Fremyella diplosiphon Fd33]
          Length = 121

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED+    ++  DL++ SG       +G+EALE  +   PD++++DI +  ++G
Sbjct: 1   MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQSTPPDLVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + Q +PV+  ++   + D     K G +AYI+KP   +  + T+K+ + 
Sbjct: 61  YEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120


>gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 226

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V++V+D    ++L    +    Y AL   NG +AL+   Q   D++I+D+ ++ + G 
Sbjct: 4   KTVLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVMMEGMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++      +PVI +TA   + D+ R  K G + Y+ KP S    M  ++  +  
Sbjct: 64  HVCERIRQK---HSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRR 120

Query: 123 A 123
           A
Sbjct: 121 A 121


>gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 63/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++++ED     +L    +E  GY  L   +G+  LE AR + PD+I++D+ L  + G
Sbjct: 1   MKTILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAARSNPPDLILLDLMLPGLMG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K +K++ +   IP+I +TA   + D     + G + Y+ KP S    +  +K  + 
Sbjct: 61  TEICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 232

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K +  +I +D      L    +E  GY  ++  +G EA+ + +    D++++DI + ++
Sbjct: 1   MKHISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    +  R  +  +GY      +G +AL+    ++PD +++D+ +  + GLE
Sbjct: 2   RILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   +  ++P++ +TA     D       G + Y+ KP +L   +  ++  +  A
Sbjct: 62  VCRRLRSAGD--DLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRRA 119


>gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 230

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +   +     +  +GY     ++G+EALE+  + +P+++I+D+ +  + GLE
Sbjct: 2   KIVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVMMPRMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + +  P++ +TA     D       G + Y+ KP +L   +  ++  +  A
Sbjct: 62  VCRTLRGSGDDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119


>gi|148549046|ref|YP_001269148.1| histidine kinase [Pseudomonas putida F1]
 gi|148513104|gb|ABQ79964.1| histidine kinase [Pseudomonas putida F1]
          Length = 785

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  + + ++   G        G EALEL  + + D+++MD  +  + G 
Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGY 723

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E +++I++     E+P++A+TA AM  + ER R  G   Y++KP      +  +  ++
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHWV 781


>gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
 gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED+    +L RD +E + +      +G E L+ A Q   D+II+DI L  ++G
Sbjct: 1   MKKILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIMLPGVNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    ++ IP++ V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKQIRA---VKNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLE 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 242

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA+E   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 237

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IV+D    ++L    ++ +GY      +G EA    R+   D++++D+ L  + G
Sbjct: 1   MGHVLIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKVREGNVDLVVLDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + +  ++D     IPVI +TA   + D       G + Y++KP      +  +K  + 
Sbjct: 61  LSLCRSWRDDGIG--IPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 297

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D+    +L   L+   G+      NGME  ++ R+ +PD+II+D+ L    
Sbjct: 63  MARTILVVDDDPEIGRLVAALLSREGFDVRTAENGMELDDVLRKVRPDLIILDLMLPGED 122

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++++ +      P++ +TA   + D     + G + Y+SKP      +  ++  +
Sbjct: 123 GLSICRRMRSEGAF---PILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALL 179

Query: 121 GE 122
             
Sbjct: 180 RR 181


>gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D    +++ +  +E  G+  +   NG   L+  ++ KPD++I+D+ L  IS
Sbjct: 1   MNKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K++++      +P++ +TA   + D+      G + YI+KP S    +  +K  +
Sbjct: 61  GEELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 233

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    +   GY   +  NG +AL +  +  PD++++DI +  + GLE+
Sbjct: 6   ILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEEDPDLVVLDIMMPGMDGLEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I+ +   + +P++ ++A +   D+    K G + Y++KP +    +  +K  +  
Sbjct: 66  CRAIRRE---RNVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRR 120


>gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator
           [Prosthecochloris aestuarii DSM 271]
 gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family
           [Prosthecochloris aestuarii DSM 271]
          Length = 236

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 63/118 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+    KL +  +E +GY      +G EAL+L +    D++++DI L  + G E+
Sbjct: 6   ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSYDIMLLDIMLPGMDGFEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++    +++P+I +TA   + D+    + G + Y+ KP S       I+  +  
Sbjct: 66  CRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123


>gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 234

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60
           + +V+IVED+     +    +   G       +G  ALEL    KP D++++D+ L  + 
Sbjct: 1   MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60

Query: 61  GLEITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G+ + ++++E  S  + +PV+ +TA   +       + G + YI+KP S       ++  
Sbjct: 61  GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 235

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  +KL    +   G+      NG +AL LA     D I++DI L ++ 
Sbjct: 1   MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++      + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 233

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|167032462|ref|YP_001667693.1| histidine kinase [Pseudomonas putida GB-1]
 gi|166858950|gb|ABY97357.1| histidine kinase [Pseudomonas putida GB-1]
          Length = 785

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 63/118 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  + + ++   G        G EALEL +    D+++MD  +  + G 
Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLQHDDFDLVLMDCNMPVMDGY 723

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E +++I++     E+P++A+TA AM  + ER R  G   Y++KP      +  I  ++
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALIDHWV 781


>gi|298482083|ref|ZP_07000271.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298271640|gb|EFI13213.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1458

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDNE      ++++ +  Y  +   NG E L+ A    PD+II D+ +  + GLE+
Sbjct: 1201 ILVVEDNEELKAFLKNIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1259

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +QIKE++ +  IP+I ++A A   D     + G + YI+KP S +     I   + +
Sbjct: 1260 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1317


>gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
 gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
          Length = 241

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   + R+G EA +LA ++    I++D+ L E+ 
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  Q++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEVATQLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus 10329]
          Length = 1128

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y+SKP +       I+ ++
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 839


>gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 242

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA+E   +  PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEECNPDLLILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 225

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I++D E+ +K  +  +E  G+      +G + L+  R    D++I+DI L ++ G
Sbjct: 1   MEKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+       IP+I +TA     D+    + G + Y++KP +    +  I+  + 
Sbjct: 61  FSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 233

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED+   + L    +E  GY      +G EA    +  + DVI++D+ L    
Sbjct: 1   MKARILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI +Q++++      PVI +TA   + D     + G + Y++KP S+   M  IK  +
Sbjct: 61  GLEICRQLRQEKNY--TPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 225

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 248

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALE  R ++PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVITASDGNEALECFRVNEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
 gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
          Length = 237

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  ++++ +D++    L +  +E   Y+     NG EAL L  Q+  +++I+D+ + +I
Sbjct: 1   MKDIRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+++       +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCKKLR---YKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E  + L    ++ +G+  +   +G  A + A   +PD+II+D+ L ++ 
Sbjct: 1   MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++    +   P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU121]
          Length = 233

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
 gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
          Length = 229

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED     ++   ++E +G+   +  +   A+       PD++++D  +   S
Sbjct: 1   MARRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K +K DS  +++PV+ +TA   + D  +  + G + Y+ KP S    +  +K  +
Sbjct: 61  GIQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|91977506|ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palustris BisB5]
 gi|91683962|gb|ABE40264.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisB5]
          Length = 457

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N++L    +    +  +   NG +ALE+  + + D++++D+ + ++ 
Sbjct: 1   MSARILVVDDIPANVRLLEARLSAEYFDVVTASNGAQALEICARAECDIVLLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K + +   IPV+ VTA     D  R  + G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    L+    +      N  EAL  A +   D++I+ + L++  GL 
Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEANPSEALFHAAEGNYDLLIVSLGLEDFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++A+ A A       R  + G   Y+ +P+  +  + 
Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|227821649|ref|YP_002825619.1| response regulator PleD [Sinorhizobium fredii NGR234]
 gi|227340648|gb|ACP24866.1| two component response regulator [Sinorhizobium fredii NGR234]
          Length = 455

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  L   +G  AL +      D++++DI + ++ 
Sbjct: 1   MTARILVVDDVPANLKLLEARLVAEYFDVLTASDGRSALAVCENTPVDLVLLDIMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K ++    IPV+ VTA     D  R  K G + +++KP++    M  +K  +
Sbjct: 61  GFEVCERLKANNRTTHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 83.6 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     ++          +   AL  A ++  D++I++    +   L +
Sbjct: 156 VLLVDGRASSQERLLRALKPI-AEVAVISDPQAALFEAAENSFDLVIVNANFDDYDPLRL 214

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + IP++ VT    +    R  + G   YI +P+  +  +      I  
Sbjct: 215 CSQLRSLERTRFIPILLVTEQGSEEMIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272


>gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
 gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L +D +E SG+      +G   L+ A ++  D+ I+D+ L  + G
Sbjct: 1   MSKILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDYDLFILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI +Q++++   +  P+I V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICRQVRDE---KNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 237

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +   +L +  +E  GY+    ++G  AL        +++I+DI L +  G+E
Sbjct: 6   RILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDYNLVILDIMLPDTDGVE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+E   +  IP+I +TA   + D+    + G + YI+KP      +  +K  +  
Sbjct: 66  VCRTIRE---ITNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRR 121


>gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
 gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +   +  R  +  +GY  L   +G+EA+E  R   P+++I+D+ +  + GLE
Sbjct: 2   KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ +   +  P++ +TA     D       G + Y+ KP +L   +  ++  +  A
Sbjct: 62  VCRTLRSEGWDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119


>gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 237

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  Q+  +++I+D+ + +I
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
 gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L +D +E SG+      +G   LE A + +  + I+D+ L  + G
Sbjct: 1   MSKILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEYSLFILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+I+E+   +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICKKIREE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 225

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 233

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K +  +I +D E    L    +E  GY   +  +G EA+ +      D++I+DI + ++
Sbjct: 1   MKTISILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQPIDLLILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T++I+E      +P+I ++A     D+      G + YI+KP +    +  +   
Sbjct: 61  DGYEVTRRIRE---THNMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +     + + GY      +G+  L LAR+  PD+ ++D  L  +S
Sbjct: 1   MTTHILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI ++++       IPVI +TA     D       G + Y+ KP S+   +  I+ ++
Sbjct: 61  GLEICRRLRATGN--SIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|300864888|ref|ZP_07109734.1| response regulator receiver domain-containing protein [Oscillatoria
           sp. PCC 6506]
 gi|300337112|emb|CBN54884.1| response regulator receiver domain-containing protein [Oscillatoria
           sp. PCC 6506]
          Length = 128

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D           ++  GY  +   +G+ A++   +  PDVI++D+ L E+SG
Sbjct: 1   MPQILLVDDEPALRDSLTYTLQKEGYEVMTAADGLSAIKQFHKQVPDVILLDLMLPEVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+  +I+       +P++ +TA     D+    + G + Y++KP +    +  IK  + 
Sbjct: 61  MEVCWRIRA---FSNVPIVMLTAKDQDIDKVWGLEAGADDYVTKPFNTRELVARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|268317907|ref|YP_003291626.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
 gi|262335441|gb|ACY49238.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
          Length = 523

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED+     L +  ++  GY  +   NG EA E ARQH  D++I+D++L  + G 
Sbjct: 396 RRILLVEDDPDIAALIQIRLQRDGYEVVHLANGREAAEWARQHTADLVILDVKLPGMDGF 455

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   ++      E+P++ +T+ + +    R  + G + Y+ KP S       +++ +  
Sbjct: 456 ELLAFLRAQPAFAEVPIVMLTSLSQEQHVVRGFELGADDYVVKPFSPVELSARVRRLLHR 515



 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 52/120 (43%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           ++++VE ++    L   +++T      +     EA +  +Q +   +II ++ L ++ G 
Sbjct: 103 RLLLVEPDDGLADLLTAMLQTPYRQIHRVATAAEAQQWLQQQRSAHLIITELFLPDLDGR 162

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +   I++  + Q++P++ ++A      +      G +  + KP   +     +   +  
Sbjct: 163 SLILWIRQQPQTQQMPILVLSAHLSSAVKAECYALGADDVLEKPFDPAELSLIVASLLQR 222


>gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 232

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +   +  R  +  +GY  L   +G+EA+E  R   P+++I+D+ +  + GLE
Sbjct: 2   KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ +   +  P++ +TA     D       G + Y+ KP +L   +  ++  +  A
Sbjct: 62  VCRTLRSEGWDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119


>gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 71/116 (61%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDN+ N+      +E+ GY  +   NG +AL+ AR+  PD+IIMDIQ+  ++GLE 
Sbjct: 835 ILLAEDNQANIDTISSYLESRGYEMVLAENGQQALDFAREKCPDLIIMDIQMPGMNGLEA 894

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +QI+ + +  +IP+IA+TA AM  D       G   Y++KPI L   + TI++ +
Sbjct: 895 IRQIRNEQKFIDIPIIALTALAMPSDRTTCLAAGANEYLTKPIKLKQLVLTIQQLL 950



 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETS---GYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            V++++            ++      Y  ++     EAL    +  P++I++D      +
Sbjct: 8   TVLLIDKCSEERANMTRHLQQDSLYNYQIIEFSIAKEALNWCLEKTPEIILLDFASVNEN 67

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIK 117
                ++++      +  VI +     +    R  K G + Y+ K  I+  I    I+
Sbjct: 68  ASIFLEKLRSRLSNSQFTVILLIKPGDEDLAVRAMKSGAQDYLIKNQITPEILQRVIR 125


>gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +  +   +G EAL     + P+++++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S   + P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREIRAKS---DTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
 gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
          Length = 234

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + +++IV+D     ++    +E + +  L+  N     E+    +PD++++D  L  +
Sbjct: 1   MSRNRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G+E+ +++K D    E+P+I +TA + + ++ +    G + YI+KP S    +  IK  
Sbjct: 61  TGIELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAV 120

Query: 120 IGEA 123
           +  A
Sbjct: 121 LRRA 124


>gi|291445851|ref|ZP_06585241.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348798|gb|EFE75702.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 228

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  R  +   GY      +G +AL +A  + PD+I++DIQ+  + GL
Sbjct: 30  QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 89

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+        P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 90  TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 147


>gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 228

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E   ++ +  +ET+GY      +G  A E      P ++++D+ L  I G+E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMMLPGIDGME 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++DS    +PVI +TA     D+    + G + Y+ KP      +  +K  +  
Sbjct: 67  VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122


>gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 238

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G EA+   R+++P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++      IP+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  EVCREVRK---TSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRR 121


>gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 233

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  +   +G EALE+    +PD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 225

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H  D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++SE   +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESE---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 234

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D      L +  ++ +GY      +G+ A + A++ + + I++D+ L E+ G
Sbjct: 5   MTKILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + KQ+++D      P+I VTA   + D     + G + YI+KP S    +  +K  + 
Sbjct: 65  MTVLKQLRQDKV--STPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLR 122

Query: 122 EA 123
            +
Sbjct: 123 RS 124


>gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium marinum M]
 gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M]
          Length = 232

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    +  R  +  +GY      +G+EALE+    +PD +++D+ +  + 
Sbjct: 1   MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +
Sbjct: 61  GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|15599577|ref|NP_253071.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100035|ref|ZP_01363953.1| hypothetical protein PaerPA_01001056 [Pseudomonas aeruginosa PACS2]
 gi|116052415|ref|YP_792726.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893472|ref|YP_002442341.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254238956|ref|ZP_04932279.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|254244809|ref|ZP_04938131.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|296391088|ref|ZP_06880563.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106911|ref|ZP_07793114.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
 gi|9950611|gb|AAG07769.1|AE004854_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115587636|gb|ABJ13651.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126170887|gb|EAZ56398.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|126198187|gb|EAZ62250.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|218773700|emb|CAW29514.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879616|gb|EFQ38210.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
          Length = 227

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++D+ L  I G  
Sbjct: 2   RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120


>gi|298385028|ref|ZP_06994587.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298262172|gb|EFI05037.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1450

 Score =  162 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE      ++++ +  Y  +   NG E L+ A  + PD+II D+ +  + GLE
Sbjct: 1192 TILVVEDNEELKAFLKNIL-SENYTVITAPNGKEGLQHAVDNIPDLIISDVMMPVMDGLE 1250

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++IKE++ +  IP+I ++A A   D     + G + YI+KP S +     I   + +
Sbjct: 1251 MIRKIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309


>gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score =  162 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D+    ++ +  +E SGY         EA +  +  KPD+I++DI + E  G
Sbjct: 1   MSKILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDIIMPETDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K I+ +    + PVI +TA +   D+    + G + YI KP      +  +K  + 
Sbjct: 61  YEILKWIRRE---HQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 242

 Score =  162 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMPKMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 81  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 135


>gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
 gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
          Length = 247

 Score =  162 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE A Q+  D+I++DI +    G+E
Sbjct: 15  RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 75  VCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRS 131


>gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  162 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D    +++ +  +E  G+  +   NG   L+  ++ KPD++I+D+ L  IS
Sbjct: 1   MNKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K++++      +P++ +TA   + D+      G + YI+KP S    +  +K  +
Sbjct: 61  GEELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  162 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     +L    +E+ GY   +  NG++ALE  R  + D+I++D+ L  +S
Sbjct: 1   MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+         V+ +TA +   D+      G   YI+KP  +   +  I+  +
Sbjct: 61  GIELLRRIRAHD--SHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAAL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 233

 Score =  162 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 57/118 (48%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D++    + +  +E  G+      +G    E   ++  + +I+DI L E+ G E+
Sbjct: 6   VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+      ++P+I +TA   + D+    K G + Y+ KP S    +  ++  I  
Sbjct: 66  CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRR 123


>gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
 gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
          Length = 232

 Score =  162 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED E   ++   ++E + +      +  +AL    + +PD+I++D  L  +SG+E 
Sbjct: 6   VLVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQEPDLILLDWMLPGVSGVEW 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K+D    +IP+I VTA   + D+ R    G + Y++KP S    +  I+  +  +
Sbjct: 66  ARRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRRS 124


>gi|261250289|ref|ZP_05942865.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
 gi|260939405|gb|EEX95391.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
          Length = 1128

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 59/115 (51%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D  +N+++    +   GY     ++G EAL    + KP+++++DI +  +SG ++ 
Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALAAVEKEKPELLLLDIMMPGMSGYQVC 784

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++E  +   +P+I +TA     D  R    G   Y+SKP +       I  ++
Sbjct: 785 ESLRESYDHAALPIIMLTALNQTDDRIRGFSVGANDYLSKPFNKQELAARIVAHL 839


>gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 218

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  +G EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAEDGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115


>gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 218

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115


>gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 242

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 81  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 135


>gi|78356986|ref|YP_388435.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219391|gb|ABB38740.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 647

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 68/118 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN++N ++ ++L+E  G       +G+EAL L   +  D+I MDIQ+  + GLE 
Sbjct: 294 VLVVEDNKINRQIAKELLEGVGVRVTLAGDGLEALALVENYDFDLIFMDIQMPRMDGLEA 353

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++    ++ PV+A+TA A+ GD E   + G   +I+KPI        +  +I  
Sbjct: 354 CRRIRQLQHKKQPPVVAMTAHALAGDRETSLRAGMNDHITKPIDPDELYAALANWIKR 411



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61
           +V++ +DN  +  + ++++E+  +      +G EA++L ++      V+++D ++  + G
Sbjct: 146 RVLVADDNFTSRAILKEVLESLRFDVTLAESGEEAVDLVQKTAEPFKVVLLDWRMPGLDG 205

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L   + I++        ++ +TA+  +     I     +  + KP++ S+ + TI   + 
Sbjct: 206 LACARHIRQLDLPVRPTILIITAYGREEVLGEIPSEIIDGVLLKPVARSLLLNTILDALP 265

Query: 122 E 122
           E
Sbjct: 266 E 266


>gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 226

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K+ +V+D++   ++    +E  G+   Q  +G  AL   ++  P ++I+DI L  I G
Sbjct: 4   SQKIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKIQEKPPKLVILDIMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + K++++     ++P+I +TA     D+    + G + YI KP      +  +K  + 
Sbjct: 64  IALCKEVRK---FSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 231

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED+     L +  +E  GY      +G + L     H+PD I++DI L +I G E+
Sbjct: 7   VLVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGLIDYYDHQPDFIVLDIMLPKIDGWEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++D   + +PVI +T      D+ +  + G + Y+ KP      +  +K  +  
Sbjct: 67  CREIRKD---RNVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRR 121


>gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
 gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
          Length = 237

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL+L  Q+  +++I+D+ + ++
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNYNLVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 225

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++++ED        R  +   GY      +G   LELA     D+I++D+ L  I G
Sbjct: 1   MTRILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ DS    +P+I +TA     D     + G + Y+ KP +    +  I+  + 
Sbjct: 61  LEVARRLRADS---NVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1141

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 76/127 (59%), Gaps = 6/127 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VEDNE+N ++ ++++ + G    +  NG +ALE  + +  D+++MDIQ+  + G 
Sbjct: 790 KRILLVEDNEINRQVAQEILASVGMEVFEAYNGEKALEFLKGNDVDLVLMDIQMPVMDGH 849

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-- 120
           E T++I++ +  +++P+IA+TA AM  D E+ ++ G   +I+KP         + +++  
Sbjct: 850 EATRRIRDQARFKDLPIIAMTAHAMLADIEKSKEVGMNDHIAKPFDPDDLFAVLNRWLSG 909

Query: 121 ----GEA 123
                 A
Sbjct: 910 AAGGRRA 916



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQEISG 61
           ++V+DN  +  + + ++E  G      ++G EA++            ++++D ++ E+ G
Sbjct: 648 LVVDDNPTSRIILKGMLEYMGLSVTTVKSGAEAIDALHGRRGADAFRLLVVDWRMPEMDG 707

Query: 62  LEITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE  ++I +D  +  + P+  V+A+      +R  + G    + KP++ S     + + +
Sbjct: 708 LETAERILKDEAIAVKPPMFMVSAYGNASLVKRTNELGFRGLLFKPVNQSFLFNLVVETL 767

Query: 121 GE 122
           G+
Sbjct: 768 GK 769


>gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 256

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IVED      +    +   GY     ++G  AL      +PD++I+DI L  + G 
Sbjct: 21  ATILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIMLPGMDGF 80

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++D    ++ ++ +TA + + D+      G + Y++KP S       +K  +  
Sbjct: 81  EVCRRIQQDF---DVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRR 137

Query: 123 A 123
           +
Sbjct: 138 S 138


>gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  ++G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         IK  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVLRR 118


>gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 255

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     ++    +  +GY  +   +G EAL +  Q  PD+I++D+ L ++ G  
Sbjct: 15  KILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLPKLDGYG 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++   L ++P+I ++A     D       G + Y+ KP S       I   +  
Sbjct: 75  VCRELRK---LSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRR 130


>gi|27380234|ref|NP_771763.1| response regulator PleD [Bradyrhizobium japonicum USDA 110]
 gi|27353388|dbj|BAC50388.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 457

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  +   NG EAL ++R+ + D+I++D+ + ++ 
Sbjct: 1   MSARILVVDDVPANVKLLEARLSAEYFDVMTASNGTEALAISRRAECDIILLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D     IPV+ VTA     D  R  + G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRRLKTDPATHHIPVVMVTALDSPSDRNRGLEAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D + + +    L+    +      N  EAL  A +   D++I+ + L    GL 
Sbjct: 157 RILLVDDRQSSYERLASLLAAE-HTVDVEPNPTEALFHAAEGNYDLLIVSLDLNNFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++A+ A         R  + G   Y+ +PI  +  + 
Sbjct: 216 LCSQARSLERTRHVPILAI-ADPENSTRLLRGLEIGVNDYLLRPIDKTELLA 266


>gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
 gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
          Length = 229

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 58/122 (47%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D      +    +    +  +   +  EA        PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++ +++S  +EIP+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++VED  +  ++ +  ++ +GY      +G+EA+EL  + KPD++++D+ L E +G
Sbjct: 1   MKSILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFDEKKPDLVLLDVMLPERNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI + I+E S     PVI +TA      + +    G + YI+KP      +  +   + 
Sbjct: 61  WEILQYIREKS---SCPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 290

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D    +++    ++ +GY  +   +G EALE+  + +PD++++D+ L ++ G 
Sbjct: 26  ATILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPKMDGF 85

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + YI KP S       I   +  
Sbjct: 86  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142


>gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 233

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  +   +G EALE+    +PD++I+D+ L E+ G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes]
          Length = 237

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++++D +    + +  +   G+      +G EALEL  + +PD+I++DI L    G+
Sbjct: 4   KKILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 64  EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120


>gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
 gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
          Length = 228

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    +E  G+   +  +G EAL L  +  PD+I++D  L  +SG+E
Sbjct: 6   TVLVVEDEPAQREVLAYNLEAEGFRVNRAADGEEALMLVDEAAPDIIVLDWMLPSVSGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+K  +E + +P+I ++A + + D  R  + G + Y+ KP S+   M  ++  +  
Sbjct: 66  VCRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRR 124


>gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    + +  +   G+      +G EA++   ++ PD++I+D+ L +  
Sbjct: 1   MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDKYDPDLMILDLMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++     ++P+I VTA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 231

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D    +++ +  +E  G+  +   NG   L+  ++ KPD++I+D+ L  IS
Sbjct: 1   MNKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K++++      +P++ +TA   + D+      G + Y++KP S    +  +K  +
Sbjct: 61  GEELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601]
 gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601]
          Length = 239

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +   +L +  +E   Y+  +  NG +AL++A ++  DVI++D+ +    G+E
Sbjct: 6   KVLIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALKYDYDVILLDVMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+I+     +  P++ +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCKEIR---MAKATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122


>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 833

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 9/128 (7%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N  + + ++E  G+      NG EALE       DV++MD+Q+  + G+E 
Sbjct: 573 VLVVEDNPVNQTVAKRMLEHVGHSVTVANNGEEALEAIDNRHFDVVLMDVQMPVMGGIEA 632

Query: 65  TKQIKEDS---------ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           T+ I+            + + +P+IA+TA AM+GD ER  + G + Y++KP+        
Sbjct: 633 TQAIRAREARRSWVLAGDWKPVPIIAMTAHAMEGDRERCLQAGMDDYVAKPVRPEALFAA 692

Query: 116 IKKYIGEA 123
           I++ +G A
Sbjct: 693 IERVLGPA 700



 Score = 55.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNG---MEALELARQH--KPDVIIMDIQLQE 58
           +V++   N          ++ +   A    +G    +AL  A         ++MD  L E
Sbjct: 418 RVLVASANAAFADFLCATLQEAALRAEAACSGVAVEQALARAADGSDPFAFLLMDADLPE 477

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY-ISKPISLSIFMETIK 117
             G  + ++        +  +  + + + + D  R  + G   Y ++KP S    +  ++
Sbjct: 478 PGGFALAQRFAAAWPRPDRIIPMMASHSQRNDALRCEELGL-GYRLAKPFSAEDLLAVLR 536


>gi|225631178|ref|ZP_03787881.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591126|gb|EEH12305.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 460

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D   N+KL    ++   Y      +G EA++L  + +PD+I++DI + +++
Sbjct: 1   MTAKILVVDDVLSNVKLLEARLKAEYYTVSVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K++K D     IP+I VTA     D  +    G + +++KPI+ +     IK   
Sbjct: 61  GFQVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 53/118 (44%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++++    +   ++++          + MEAL++  ++  D+II D+Q  +  GL +
Sbjct: 159 ILVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + +   E +  P++ ++    K +  +    G   Y++ P+     +  +   +  
Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276


>gi|75907998|ref|YP_322294.1| metal dependent phosphohydrolase, HD region with response regulator
           receiver modulation [Anabaena variabilis ATCC 29413]
 gi|75701723|gb|ABA21399.1| Metal dependent phosphohydrolase, HD region with Response Regulator
           Receiver modulation [Anabaena variabilis ATCC 29413]
          Length = 414

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++V+D+  +      L+   GY  ++  +G  A++L  Q +PD+I++D+ + E+ G
Sbjct: 93  SPKILVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQQPDLILLDVMMPEMDG 152

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ + +K+D   + IPVI +TA   +    R  + G + ++SKP      +  +K  +
Sbjct: 153 FEVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLV 211


>gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 228

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   K+++V+D+    ++ +  +    Y  ++ R G +ALE      P+++++D+ +  +
Sbjct: 1   MSIAKILVVDDDPQIRRVMKATLVGHSYEVIEARTGEDALEALPHEMPNLVLLDMNMPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE  + I+      +IPVI ++    + D+      G + Y++KP  +   +  I+  
Sbjct: 61  GGLETCRAIRS---GTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAA 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 218

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAGNGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae OXC141]
          Length = 235

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  ++L    +   G+      NG +AL LA     D I++DI L ++ 
Sbjct: 1   MTKQVLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++      + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKRLRAKGI--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
 gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
          Length = 234

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  + G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + YI+KP S    +  I+  + 
Sbjct: 61  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra
           magnipapillata]
          Length = 566

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 65/115 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+ +N KL   L++  G+      NG  AL++  +   D+I+MD+ +  + GLE 
Sbjct: 312 ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPYDLILMDMMMPVMDGLEA 371

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T+ I+ +   + IP+IA+TA AM+ D     + G + YI+KPI      + I + 
Sbjct: 372 TRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKILQL 426


>gi|237799889|ref|ZP_04588350.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806381|ref|ZP_04593085.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022744|gb|EGI02801.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027494|gb|EGI07549.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 245

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G +      +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEASSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K +++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 237

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  ++++ +D++    L +  +E   Y+     NG EAL L  Q+  +++I+D+ + +I
Sbjct: 1   MKDIRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+++       +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCKKLR---YKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 236

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 1   ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M+  K ++IV+D +    L    +++ GY+ ++  NG EAL + R+   D++I+D+ + +
Sbjct: 1   MMGNKTILIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G++   +I+E+   +E+P+I ++A +   D+      G + YI+KP +    +  +K 
Sbjct: 61  LNGIDTCLKIREE---REMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKS 117

Query: 119 YIGE 122
            +  
Sbjct: 118 QLRR 121


>gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 242

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMPKMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 81  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135


>gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264]
 gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264]
          Length = 224

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++++ED+    +L    ++  G+      +G E L +A+    D+I++D+ L ++S
Sbjct: 1   MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDLILLDVMLPKMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I+E     ++P+I +TA     D+      G + Y++KP S    +  IK  +
Sbjct: 61  GMEVCKRIRE---GSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|260469837|ref|ZP_05813989.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259028390|gb|EEW29714.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 230

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++ +D+    ++    +E +G       +G  AL    +H PD++++DI + E+ 
Sbjct: 1   MPHHILVADDDPHIREVICFALEKAGMKTAAVSDGAAALRAIERHTPDLVVLDIGMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++      ++PV+ ++A   + D     + G + Y++KP S    +  +   +
Sbjct: 61  GLEVCRRLR---HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVIL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 246

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++++D+   ++L    +E SGY  L+  +G +    A Q  PD+I++D+ L ++ G
Sbjct: 1   MPRVLVIDDDPAILELVAFNLEMSGYEVLEAPDGHKGQAFALQMLPDLIVLDLMLPQVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++ D    EIP++ +TA     D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  LTICQRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
 gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
          Length = 227

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 67/125 (53%), Gaps = 3/125 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M KK   +++V+D    +++    +   GY  +   NG+EA++LA++H+P +II+D+ + 
Sbjct: 1   MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKHQPHLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  + I+ + +L++  +   TA      +      G + YI+KPI   + +  +K
Sbjct: 61  EMDGIEACEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 242

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  +G+      +G  AL LAR  +PD++++D+ L ++ G 
Sbjct: 10  ARLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPDMDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++E  + Q +PV+ +TA     D+ +    G + Y++KP SL   +  I+  +  
Sbjct: 70  TVTRRLRE--KGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127


>gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 230

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ +D +   +  R  +  +GY  +   +G +A+EL  + +P ++I+D+ + ++ GLE
Sbjct: 2   KILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + +  P++ +TA     D       G + Y+ KP +L   +  ++     +
Sbjct: 62  VCRTLRSTGDDR--PILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRRS 119


>gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
          Length = 235

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  +KL    +   G+      NG +AL LA     D I++DI L ++ 
Sbjct: 1   MTKQVLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++      + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 620

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++V+D +    L    +  SGY  ++  +G EAL++ ++    ++I+DI + ++ 
Sbjct: 1   MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++E      IP++ ++A +   D+ +    G + Y++KP +       +K  I
Sbjct: 61  GIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 237

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D    ++L +  +E  G+      +G+ AL  A   +PD+II+DI L ++ GL
Sbjct: 4   ARILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQLDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ ++++   +    P+I +TA   + D     + G + YI KP S    +  +K  + 
Sbjct: 64  EVCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLR 122


>gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
 gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
          Length = 235

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 3   MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 63  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612]
 gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612]
          Length = 233

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 63/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED     +L +  +E  G+       G  A+E     +PD+II+D+ L    G
Sbjct: 1   MKKILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIVDIRPDLIILDLMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++ D  L  IPVI +TA + + D+    + G + Y++KP S+      +K  + 
Sbjct: 61  LTICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
 gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
          Length = 268

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V+IV+D     ++    ++  GY  +   +G EAL +  Q +PD+I++D+ L ++ G 
Sbjct: 24  ATVLIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVMLPKLDGF 83

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 84  AVCRRLRAESC---VPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140


>gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 246

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++ +D      + R  +E  G+      NG EA+ L ++H+PD++++D+ + ++ 
Sbjct: 1   MGANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+   I++     + P+I +TA   + D       G + Y++KP S    +  +   +
Sbjct: 61  GLEVCDLIRQ---TDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNIL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|123965391|ref|YP_001010472.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199757|gb|ABM71365.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 260

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+    +L    +E SG+   +  +G++   LA Q+ PD+I++D+ L  + 
Sbjct: 1   MKISILLIEDDRDMRELVAGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D     IP++ +TA     D+      G + YI+KP  L      IK  +
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 244

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 54/119 (45%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D        +   E  G+I     +G E  E A+   PDV++ D+ +  + G  
Sbjct: 19  RVLLVDDEPGLRTAVQAYFEDEGFIVSTAADGEEGWEKAQSEVPDVVLSDVMMPRVDGFG 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++ED  L   PVI +TA  M  D     + G + YI KP      +  ++  +  
Sbjct: 79  LLKLLREDERLGGTPVIFLTAKGMTADRIAGFRAGVDDYIPKPFDPDELVARVRNVVQR 137


>gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 223

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D E   ++    ++  G+      NG   + + ++ KPD++I+D+ +  + G
Sbjct: 1   MDKILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+  QI+    L+ + +  +TA      +      G + YISKPI   + +  +   + 
Sbjct: 61  IEVCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|262195305|ref|YP_003266514.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262078652|gb|ACY14621.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 2107

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK+++V+D+  N+     ++E      +   NG EAL+   ++   D+++MDI + E+ G
Sbjct: 1987 KKILVVDDDVRNIFAITTILEQHLMDVVYAENGREALDQLDRNPDIDIVLMDIMMPEMDG 2046

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T++I+ D     +PVIA+TA AMKGD ++  + G   YI+KP+     +  ++ ++
Sbjct: 2047 YEATRRIRSDGRYGRLPVIALTAKAMKGDRDKCIEAGASDYITKPVDPDQLISLLRVWL 2105



 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 6/120 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+++  +   D +   G+  L   +G E L +A+ +KPD I +D++L ++ G  + 
Sbjct: 1721 LIIEDDDVFARTLLDAVRERGFRGLVALSGNEGLAVAKSYKPDAITLDLRLPDMDGWVVL 1780

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKYIGE 122
             ++K DSE   IPV  ++A A   DE R  + G  A+++KP+        +  I+ ++  
Sbjct: 1781 DRLKHDSETGHIPVHIISAAA---DERRGLENGALAFLNKPVGPEALDVALSDIESFLDR 1837



 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V+IVED+++  +   +LI+          +   AL+       D +I+D++L E+SG 
Sbjct: 1840 KRVLIVEDDDVQRRALVELIDGEDVSTEAVGSAEAALQALESGTFDCMIIDLKLPEMSGD 1899

Query: 63   EITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ ++ KE    + +PVI  T     +GDE  +R+   E  I K + S    + 
Sbjct: 1900 ELIEKFKERPAFRRMPVIVYTGKELSEGDEISLRRL-AETIIVKDVRSPERLLA 1952


>gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 234

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 63/120 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D      + R  +ET G+  L+  +  +A  L     PD++++D  L   SG
Sbjct: 1   MKKILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLPGGSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+  ++K++   Q +PVI VTA A + D  +    G   YI+KP SL   +  I+    
Sbjct: 61  IELLSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFR 120


>gi|78213886|ref|YP_382665.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198345|gb|ABB36110.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 262

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++    L    +E SG+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L      +K  +  +
Sbjct: 65  CQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRS 123


>gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 256

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  I G
Sbjct: 23  MARILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 82

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 83  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 139

Query: 122 E 122
            
Sbjct: 140 R 140


>gi|86141687|ref|ZP_01060211.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
 gi|85831250|gb|EAQ49706.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
          Length = 227

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 3/125 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M KK   +++V+D    +++    +   GY  +   NG E ++ A+++ P +II+D+ + 
Sbjct: 1   MKKKEIKILLVDDEPDILEIVGYNLSNEGYQVITASNGKEGVKAAKKNNPHLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  +QI++    +E  +  +TA      +      G + YI+KPI   + +  +K
Sbjct: 61  EMDGIEACEQIRKLPGHEETIIAFLTARGEDYSQVAGYDAGADDYITKPIKPKVLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
 gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
          Length = 238

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D E   +L +  +E  GY+  +  NG++AL++A +     I++D+ + E  G+ 
Sbjct: 6   TVLVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMALEKDYHCILLDLMMPEKDGVA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++E    +  P+I +TA   + +     + G + YI KP S    +  +K  +  +
Sbjct: 66  VATELRE---TKMTPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAILRRS 122


>gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
 gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D +L +K  R  +   G       +G EALELA+ ++ D++++D+ L ++ 
Sbjct: 1   MGKRVLVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +QI+   +  ++P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFAVCQQIR---DFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
 gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
          Length = 257

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IV+DN    ++   L+   G+   +  NG +AL L  Q   D+II+DI +   
Sbjct: 1   MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G +  ++I+E   L   P++ ++A   + D+      G + Y++KP S +  +   K  
Sbjct: 61  NGYQTCRKIRE---LSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKAL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|254235813|ref|ZP_04929136.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719]
 gi|126167744|gb|EAZ53255.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719]
          Length = 786

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 64/116 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + L+   G       +G+ AL++  +H  D+++MD  +  + G E
Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 723

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+QI++      +P+IA+TA A+  + ER R  G + Y++KP         + ++
Sbjct: 724 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779


>gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 238

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 6   MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 66  GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|294505895|ref|YP_003569953.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Salinibacter ruber M8]
 gi|294342223|emb|CBH23001.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Salinibacter ruber M8]
          Length = 802

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++++DN +   L R  +E   Y   +  +G E   LAR   PD++I D+ + E+ G E
Sbjct: 534 TVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLARTLLPDLVISDVMMPEVDGFE 592

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++IK+D ++  +PV+ +TA A   D+      G +AY++KP      +  I+  I
Sbjct: 593 LCRKIKQDPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLI 649


>gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D     K+ R+  E  GY   +  NGMEA+ L   +  D+IIMD+ +  + G
Sbjct: 1   MAHILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDYDLIIMDVMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+I +    + IPVI ++A   + D+    + G + Y+ KP S    M  +K  + 
Sbjct: 61  YSACKEIHKS---KNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
            5692]
 gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
            5692]
          Length = 1316

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 75/123 (60%), Gaps = 6/123 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VEDN LN ++ ++++E +G        G  ALELA +H  DV++MDIQ+  + GL+
Sbjct: 1087 HVLVVEDNLLNQEVAQEILEQAGMAVTLADTGERALELAAEHAFDVVLMDIQMPGMDGLQ 1146

Query: 64   ITKQIKEDSE------LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             T++++  ++      LQ +PVIA+T  AMK D+ R    G + +I+KP  +     T++
Sbjct: 1147 TTQELRRMADKTGKHFLQNLPVIAMTGHAMKSDQNRCLAAGMDDFIAKPFRIDQLFATLQ 1206

Query: 118  KYI 120
            +++
Sbjct: 1207 RWL 1209


>gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 224

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+E   ++   ++   G+  +   +G +AL++ R  +PD++++D+ L  + 
Sbjct: 1   MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRPDLVLLDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +Q++ +S   ++P++ +TA A   D  R  + G + Y+ KP   +  +  ++  +
Sbjct: 61  GIEVCRQVRAES---DVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|33239602|ref|NP_874544.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237127|gb|AAP99196.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 255

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++   +L    +E +G+      +G++   LA Q+KPD+I++D+ L  + GL +
Sbjct: 5   ILLIEDDKDMRELVGGHLEHTGFDVQVAEDGIKGQALALQYKPDLILLDLMLPNVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D     IP++ +TA     D+      G + Y++KP  L      IK  +  
Sbjct: 65  CQRLRRDERTSSIPILMITALGATKDKVTGFNSGADDYLTKPFDLEELHVRIKALLRR 122


>gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 225

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D     KL +D +   GY   +  +G E LEL  Q   D++I+DI + +I G
Sbjct: 5   MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E+S+   +P+I +TA A + D+    +   + Y+ KP +  + +  +K  + 
Sbjct: 65  WSVCRKIREESQ---VPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IV+D     +  +  +   GY      +G++ALE A  + P++I++D+ +  + GL
Sbjct: 11  ARILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDVLMPRMDGL 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++       +PV+ +TA    GD       G + Y+ KP  L   +  I+  +  
Sbjct: 71  TAARRLRATGVT--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 233

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +  +   +G EAL     ++P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S     P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREIRAKS---NTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRR 121


>gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 222

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEI 59
           M  K+++V+D     K+ RD +   GY+  +  +G  AL++    +  D+IIMD+ + ++
Sbjct: 1   MNNKILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNNDIDLIIMDVMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K++++   L ++P++ +TA + + DE +  + G + YISKP S  I    +   
Sbjct: 61  DGWQLCKEVRK---LSKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
 gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
          Length = 229

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 66/119 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    ++  G+   +  +G EAL L  + +PD+I++D  +  +SG+E
Sbjct: 7   TVLVVEDELAQREVLAYNLDAEGFRVSRAASGDEALLLVEEDRPDIIVLDWMMPNLSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K   + + IP+I ++A + + D+ R  + G + Y+ KP S+   M  ++  +  
Sbjct: 67  VCRRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125


>gi|300865377|ref|ZP_07110187.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300336628|emb|CBN55337.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 424

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 61/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D+     + +DL+E+ G+      +G + L  A    PD+II D  +  I G
Sbjct: 1   MAKILVIDDDVTVQIVLQDLLESEGHEVAIAFDGQDGLSQAHHRPPDLIICDWMMPYIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q+K + EL  +  I +TA     D  +    G + ++SKPI     +  ++  + 
Sbjct: 61  LEVCRQLKANPELATVFFILLTAREELDDRVKGLDNGADDFLSKPIETEELLARVRAGLR 120


>gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
          Length = 236

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D    + L    +E  GY    + NG    ELA  ++ D II+D+ L  + G
Sbjct: 1   MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEITK ++ +    + P++ +TA   + D+    + G + Y++KP S    +  +K    
Sbjct: 61  LEITKALRREKI--DTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++VED    +      +   GY  L   NG  ALELA ++ PD++++DI L EI G
Sbjct: 1   MTTVLLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELAEEN-PDIVVLDILLPEIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++ S    +P+I +TA   + D     + G + Y++KP S+   +  IK  + 
Sbjct: 60  LEVCRRLRQRS---SVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
 gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +  +   +G +AL     + P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + I+  S     P+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 65  QVCRDIRSRS---NTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRR 121


>gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51]
 gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +    + +  ++  G+      NG+ AL L +++  D++++D+ L  +SG E
Sbjct: 2   RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLFKENSYDLVLLDLMLPGLSGEE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I++ S     PVI +TA     D  +    G + YI KP S    +  IK  +  
Sbjct: 62  ICREIRKISAT---PVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRR 117


>gi|54303252|ref|YP_133245.1| putative two-component response regulator [Photobacterium profundum
           SS9]
 gi|46916680|emb|CAG23445.1| putative two-component response regulator [Photobacterium profundum
           SS9]
          Length = 235

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+DN        + +  +G+  +   NG+   +L   + PD+II+DI +    G 
Sbjct: 4   KQILVVDDNFELRDALTEYLGRAGFSVIGAENGVAMWKLLESNTPDLIILDIMMPGDDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++      + P+I +TA   + D     + G + YI+K  S    +  IK  +  
Sbjct: 64  TLCQKLR---RTSDTPIIMLTAVTEETDRVAGLEMGADDYITKSFSPRELLARIKTILRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 232

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     +L    +E+ GY   +  NG++ALE  R  + D+I++D+ L  +S
Sbjct: 1   MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+         V+ +TA +   D+      G   YI+KP  +   +  I+  +
Sbjct: 61  GIELLRRIRAHD--SHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAAL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 234

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D    + L    ++ + Y  +   NG++A++  ++ + D +IMD+ L ++ 
Sbjct: 1   MAMTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E TKQI++ +E  +IP+I +TA + + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GVEATKQIRKFNE--QIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8]
 gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8]
 gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
          Length = 236

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D    + L    +E  GY    + NG    ELA  ++ D II+D+ L  + G
Sbjct: 1   MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEITK ++ +    + P++ +TA   + D+    + G + Y++KP S    +  +K    
Sbjct: 61  LEITKALRREKI--DTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|153872867|ref|ZP_02001635.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070667|gb|EDN68365.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 379

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 63/118 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D   N+ L  D +  +G+  L  ++G  AL+      PD+I++D+ +  +SG 
Sbjct: 9   KTLLIVDDIPANVSLLLDFLTKAGFKVLVAKDGESALKKTEYAHPDLILLDVMMPGLSGF 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K   E + IP+I +TA +   D+ +    G   YI+KPI     +  +  ++
Sbjct: 69  EVCKILKSKEETKNIPIIFMTALSETVDKVKGFSLGAVDYITKPIQHEEVLARVTTHL 126


>gi|146282783|ref|YP_001172936.1| two-component response regulator GltR [Pseudomonas stutzeri A1501]
 gi|145570988|gb|ABP80094.1| two-component response regulator GltR [Pseudomonas stutzeri A1501]
 gi|327481121|gb|AEA84431.1| two-component response regulator GltR [Pseudomonas stutzeri DSM
           4166]
          Length = 244

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L +  +  SG+      +G +          D++I+D+ L +  G 
Sbjct: 6   KNILLVDDDQEIRELLQTYLSRSGFQVRGVPDGAQFRSALCAEPADLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++   L  +P+I +TA + + D     + G + Y+ KP S    +  IK  +  
Sbjct: 66  SLCRWIRQHERLASMPIIMLTASSDEADRVVGLELGADDYLGKPFSPRELLARIKALLRR 125


>gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response
            regulator [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response
            regulator [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 1319

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 70/118 (59%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +V++VEDN +N ++  +L+  SG I     NG EALE   QH  D+I+MDIQ+  + G 
Sbjct: 963  ARVLLVEDNAINREVVLELLNNSGLIIETAVNGQEALERVSQHPFDLILMDIQMPLMDGY 1022

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T+ I+     ++ P++A+TA A + D +  +  G   +I+KP++ +   E +++++
Sbjct: 1023 TATRAIRTLPGWEQTPILALTASAFEEDRKACKAAGMNDFIAKPVTPAKLFEALQQWL 1080


>gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia cenocepacia J2315]
 gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response
           regulator protein [Burkholderia cenocepacia J2315]
          Length = 233

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia sp. TJI49]
          Length = 233

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 248

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   +++  G+  +   +G EA+  A    PD+I++D+ L  ++
Sbjct: 25  MKTKILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNEDPDLILLDVMLPSMN 84

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + I++      +P++ ++A     D     + G + YI+KP      +  ++  +
Sbjct: 85  GVDVCRAIRK---TSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQL 141

Query: 121 GE 122
             
Sbjct: 142 RR 143


>gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 246

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +  +  +E S +      N  E  EL +Q+ PD++I DI + E+ G +
Sbjct: 21  RLLLVDDEPGLREAVQAYLEDSDFTVDVAGNAREGWELLQQNLPDLVITDIMMPEVDGYQ 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-GE 122
             KQ++ED   + +PV+ +TA  M  D  +  + GC+AY+SKP      +  +K  +   
Sbjct: 81  FLKQMREDPLFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVVIVKNLLERR 140

Query: 123 A 123
           A
Sbjct: 141 A 141


>gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 242

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + YI+KP         I+  +  
Sbjct: 81  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRR 135


>gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 248

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALE   Q  PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFEQCNPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +  L   +G  AL    + KPD+I++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFRFKPDLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+ ++     P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREIRREN---NTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1]
 gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1]
          Length = 235

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+ A++  N  +A  L     PD++++D  L   S
Sbjct: 3   MPSNILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   ++++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 63  GIAFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
 gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
          Length = 229

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    +E  G+  L+  +G EAL +  +  PD+II+D  +  +SG+E
Sbjct: 7   TVLVVEDEMAQREVLAYNLEADGFRVLRAGHGEEALLVVEEDMPDIIILDWMMPNLSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K  SE + IPVI ++A + + D+ R  + G + Y+ KP S+   M  ++  +  
Sbjct: 67  VCRRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125


>gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 229

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D      +    +    +  +   +  EA        PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++ +++   ++IP+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLDLARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
 gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++ ED     ++    ++  G+  L   +G  ALE    H P ++I+DI +  + G
Sbjct: 1   MKKILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHSPQLVILDIMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S     PVI +TA      + +    G + YISKP      +  +   + 
Sbjct: 61  WSVLEKIREKSA---CPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 236

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++VED +         +E   Y      +G EALE   +H  D++I+D+ L  + G
Sbjct: 5   TRRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+++S   ++P+I +TA     D     + G + Y+ KP S    +   +  + 
Sbjct: 65  ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 280

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     ++    ++ +GY  +   +G +ALE+     PD++++D+ L ++ G 
Sbjct: 35  ATILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVMLPKMDGF 94

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 95  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 151


>gi|83815858|ref|YP_444228.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83757252|gb|ABC45365.1| sensor histidine kinase with multiple PAS and a response regulator
           receiver domain [Salinibacter ruber DSM 13855]
          Length = 802

 Score =  162 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++++DN +   L R  +E   Y   +  +G E   LAR   PD++I D+ + E+ G E
Sbjct: 534 TVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLARTLLPDLVISDVMMPEVDGFE 592

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++IK+D ++  +PV+ +TA A   D+      G +AY++KP      +  I+  I
Sbjct: 593 LCRKIKQDPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLI 649


>gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
 gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
          Length = 230

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 67/119 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +   GY  +Q  +G EAL+L     PD+I++D  + ++SGLE+
Sbjct: 9   VLLVEDEAAQREVLAYNLAAEGYRVVQAGDGEEALDLIGDELPDLIVLDWMMPKVSGLEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K   E + +P++ ++A + + D  R  + G + Y+ KP S++  M  ++  +  A
Sbjct: 69  CRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLRRA 127


>gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
 gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
          Length = 236

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  ++L    +   GY      +G  AL+LA     D I++DI L ++ 
Sbjct: 1   MKKQVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I+      + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKRIRAKGI--QTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium]
          Length = 232

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           ++++  +I ED E    L    +E  GY  ++  +G EAL + +    D+II+DI + ++
Sbjct: 1   MRRISILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+Q++       +P+I ++A     D+      G + YI+KP +    +  +   
Sbjct: 61  DGYEVTRQVRAQ---YNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQ 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20]
 gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20]
          Length = 229

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D      L +  +E +GY      +G  A +LA+Q   D I++D+ L  I G
Sbjct: 1   MAKILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLMLPVIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + K +++D      PVI VTA   + D     + G + YI+KP S    +  +K  + 
Sbjct: 61  MTLLKNLRQDKV--STPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 235

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D    + L    +E  GY  +   +G +A +LA     D II+D+ L  + G
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVMLPNLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EITK+++++    E P++ +TA     D     + G + Y++KP S    +  +K    
Sbjct: 61  IEITKKLRQEKI--ETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1346

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++ EDN +N K+    +E  GY      +G +A+E A +   D I+MD+ +  + G E
Sbjct: 1223 HLLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAVEAALRGGYDAILMDVHMPVMDGFE 1282

Query: 64   ITKQIKED--SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             T QI+E      +  P+IA+TA A++G+ ER  + G + YI+KP         ++++I 
Sbjct: 1283 ATAQIREREAERGRHTPIIAMTANALRGERERCLEAGMDDYIAKPFKKDELKAVLERWIQ 1342

Query: 122  EA 123
            +A
Sbjct: 1343 KA 1344



 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 6/126 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
            +V+IV+DNE N ++ R        +    R+G EALE+ R      H  ++ I+D+ + E
Sbjct: 1061 RVLIVDDNEANREILRRQTLGWDMVPTLARSGPEALEMMRAAARQGHPFELAILDMMMPE 1120

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAYISKPISLSIFMETIK 117
            + G+ + ++IK+D  L + P+I ++++    ++ R   +    A +SKP   S    T+ 
Sbjct: 1121 MDGIMLAREIKQDPSLADTPLILLSSYLFTREDHRAMDETLFAAVLSKPTRQSYLFNTLV 1180

Query: 118  KYIGEA 123
            + + E+
Sbjct: 1181 RVLQES 1186


>gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +  +  +++ GY      +GM  L LAR+ +PD+ I+D  L  ++
Sbjct: 1   MTAHILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWMLPGLT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++      +IPVI +TA    GD       G + Y+ KP S+   +  I+ ++
Sbjct: 61  GIELCRRLRATGN--KIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|269961959|ref|ZP_06176314.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi 1DA3]
 gi|269833282|gb|EEZ87386.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi 1DA3]
          Length = 1128

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 785

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y++KP +       I+ ++
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHL 839


>gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
 gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +    L    ++   +   +  N ++AL+  R   PD+ I+D+ + ++ 
Sbjct: 1   MAEKILIVDDEQEIADLVALYLQNENFTVFKHYNALDALDCIRSETPDLAILDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E       PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLELCRNIREQYRY---PVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|260463925|ref|ZP_05812121.1| response regulator receiver modulated diguanylate cyclase
           [Mesorhizobium opportunistum WSM2075]
 gi|259030300|gb|EEW31580.1| response regulator receiver modulated diguanylate cyclase
           [Mesorhizobium opportunistum WSM2075]
          Length = 457

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N++L    +    +  L   NG +A+E     K DV+++D+ + ++ 
Sbjct: 1   MTARILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCENGKVDVVLLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D     IPV+ +TA     D  R  + G + +++KP++    M  +K  +
Sbjct: 61  GFEVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 73.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+++++ + +++  + ++         T +       A +   + +++     +   L 
Sbjct: 157 KVLLIDERKSSVERIQKMLRDR-ADLDVTSDPHAGFFQAAETPYECVMISTAFADFDPLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +P+I +     +    R  + G   Y+ +PI        ++  +  
Sbjct: 216 LCSQLRSLDRTRFVPIILLADEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274


>gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D    + L +  ++  GY      +G EA+E A+  +PD+I++DI L +++
Sbjct: 1   MNEKILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIMLPKVN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K +   + + ++P+I +TA     D+    + G + Y++KP      +  IK ++
Sbjct: 61  GYDVCKTL---TPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 227

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 71/120 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D +    L    +E  G+  LQ  +G++ALEL ++ +P ++++D+ L  +SGL+
Sbjct: 2   KVLVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRERPSLLVLDLMLPHLSGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++++ +   +P++ +TA A + D+    + G + Y++KP      +  +K  I  +
Sbjct: 62  VCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRRS 121


>gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family
           [Saccharophagus degradans 2-40]
          Length = 232

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++++ED++    L    +E   Y   +  +G E L L      D+II+DI L  + 
Sbjct: 1   MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + ++  +     P++ +TA   + D     + G + Y++KP S+      +K ++
Sbjct: 61  GLQVCQHLRAKNIF--TPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|261212267|ref|ZP_05926553.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC341]
 gi|260838875|gb|EEX65526.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC341]
          Length = 1112

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G E LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 708 LVADDEPVNLRVLDSFLRLEGYRVHTVQDGHEVLEAVKREKPELLLLDIMMPGMSGYQVC 767

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 768 EKLRQSYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 822


>gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 225

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IV+D E    L +  +E +G+  L+  +G +AL++    K D +++DI + ++ G 
Sbjct: 6   KTVLIVDDEEDMRFLVKMYLENAGFSCLEAEDGDKALDVLANVKVDAVLIDIMMPKMDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+  S   ++P++ +TA   + D+ +  K G + YI KP S    +  I+  +  
Sbjct: 66  SLCERIRWQS---DVPILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRR 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 241

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VED EL  ++ RD +  +GY      +G  AL LA    PD+II+D  L  + G 
Sbjct: 15  RKILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASNPDLIILDRMLPGLDGA 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++      +P+I +TA   + D     + G + Y++KP+S    +  +   +  
Sbjct: 75  EVCRRIRQ---TMSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLRR 131

Query: 123 A 123
           +
Sbjct: 132 S 132


>gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +D     ++    +   GY  +   +G EAL+L + ++PD++++D+ + ++ G  
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++DS   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 225

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++ +D    +++  D +E  GY       G EA+   R    D +++D+ L  +SG 
Sbjct: 4   QHILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLPGMSGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + I+      ++P++ ++A     D+ R    G + Y++KP S    +  +K  +  
Sbjct: 64  EACRAIRA---FSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRR 120


>gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL103PA1]
          Length = 232

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+    +     ++ SGY      +G+EAL       PD +IMD+ +  + 
Sbjct: 1   MSMHILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE T+ ++ +    ++P++ +TA     D       G + Y+ KP +L   +  ++   
Sbjct: 61  GLEATRMLRSNGN--DVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED +      R  +   G+      +G   +  AR+   D++I+DI L  + G 
Sbjct: 8   ARILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLPGMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++      ++P+I +TA     D     + G + Y+ KP +    +  I+  +  
Sbjct: 68  EVCRRLRA---GSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRR 124


>gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +D     ++    +   GY  +   +G EAL+L + ++PD++++D+ + ++ G  
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++DS   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|291568908|dbj|BAI91180.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 483

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N++L ++++   GY      +G  AL    + +PD+I++DI + E+ G +
Sbjct: 14  TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTRFRPDLILLDIMMPEMDGYQ 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + IK++ E Q+IPVI +TA     D+ +  + G   Y++KP  +   +  I+  +
Sbjct: 74  VCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQL 130


>gi|153835385|ref|ZP_01988052.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
 gi|148868087|gb|EDL67256.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
          Length = 1128

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 785

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y++KP +       I+ ++
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHL 839


>gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 229

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+V+D +   ++ +  +   GY      +G EALE   + +PD++++D+ L ++ GLE+ 
Sbjct: 1   MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKVTEVEPDLVLLDLMLPKMDGLEVA 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I++      +P+I VTA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 61  REIRK---TYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 114


>gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D     KL +D +   GY   +  +G E LEL  Q   D++I+DI + +I G
Sbjct: 1   MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E+S+   +P+I +TA A + D+    +   + Y+ KP +  + +  +K  + 
Sbjct: 61  WSVCRKIREESQ---VPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
 gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +E  GY  L+  +G+EA+E    +    +II+D+ + ++ G 
Sbjct: 15  KILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEKDIALIILDVMMPKMDGW 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++I++ S+   +P+I +TA   + DE +    G + YISKP S  I +  +   +  
Sbjct: 75  QTCREIRQSSK---VPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALLRR 131

Query: 123 A 123
           +
Sbjct: 132 S 132


>gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 227

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED +   +     ++  GY      +G+  L   R+  P++++MD+ L  + GLE+
Sbjct: 9   ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVMDLMLPVMDGLEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++      +P++ +TA     D+      G + Y+ KP S+   +  I+ ++  
Sbjct: 69  ARRIRK---TSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123


>gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D +L +K  R  +E  G       +G EAL++A+  + D++++D+ L ++ 
Sbjct: 1   MAKQVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLMLPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +QI+E      +P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GLSVCQQIRE---FSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 246

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++V+D     +  +  +E S +I     N     EL +Q+ PD++I DI + E+ G
Sbjct: 19  SPRLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQNLPDLVITDIMMPEVDG 78

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI- 120
            +  +Q++ + + + +PV+ +TA  MKGD  +  + GC+AY+SKP      +  +K  + 
Sbjct: 79  YQFLEQMRSEPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLE 138

Query: 121 GEA 123
             A
Sbjct: 139 RRA 141


>gi|152974334|ref|YP_001373851.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023086|gb|ABS20856.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D E  ++L    +   GY  ++ ++G EALEL +Q + D+I++D+ +  + G
Sbjct: 1   MIKILLIDDEERMLQLLDLFLSPRGYFCMKAKSGFEALELVQQKEFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  KQI++   L  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WETCKQIRQ---LSNVPIIMLTARNQNYDMIKGLTIGADDYITKPFDEQVLVARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 224

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D E   +L R  ++  G+   +   G EAL +      D+ I+DI +  + 
Sbjct: 1   MKSKILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENEYIDLAIVDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +++KE    ++IPVI +TA +   D+ R    G + Y++KP      +  +K  +
Sbjct: 61  GFQLVEEMKE---FKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|302873857|ref|YP_003842490.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium cellulovorans 743B]
 gi|307689897|ref|ZP_07632343.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium cellulovorans 743B]
 gi|302576714|gb|ADL50726.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium cellulovorans 743B]
          Length = 366

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D   N+K+   +++  GY    T +G EALE+ +  + ++I++D+ + E+ G E
Sbjct: 8   KILVVDDTPFNIKIVSTILQEVGYNIYSTTSGREALEMVKNIRFNLILLDVMMPEMDGYE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K D + ++IP+I +TA        R    G   Y+ KP +    +  +K +I
Sbjct: 68  VIRKLKNDEDTRDIPIIFLTARGDSESVVRAFDEGAYDYLIKPFNPKELLSRVKTHI 124


>gi|298250725|ref|ZP_06974529.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548729|gb|EFH82596.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D        R  +E   +  L   +G+EAL    Q    ++I+DI L  + GLE+
Sbjct: 7   ILVVDDEPGIRNFIRRNLELRAFKVLLASDGLEALAHFDQANVVLVILDIMLPNMDGLEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I++ S    +P++ +TA     D+      G + Y++KP S+   M  +K  +  +
Sbjct: 67  CRRIRQKS---TVPIVMLTALGEDADKIAALDQGADDYLTKPFSVGELMARVKAVLRRS 122


>gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 256

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  I G
Sbjct: 23  MARILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 82

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 83  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 139

Query: 122 E 122
            
Sbjct: 140 R 140


>gi|156975687|ref|YP_001446594.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116]
 gi|156527281|gb|ABU72367.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116]
          Length = 1128

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 785

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y++KP +       I+ ++
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHL 839


>gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 223

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVED      L RD  +  G+  L+  +G EAL +  ++  D+ I+DI + ++ 
Sbjct: 1   MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+E   +   P+I +TA + + D+    + G + Y++KP S  + +   K  +
Sbjct: 61  GLAVCRNIRE---VSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 230

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 72/121 (59%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IVED+E   +L RD +E +G+      NG E L+  R  + D++I+DI L  ++G
Sbjct: 1   MRKILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIMLPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+I+++   ++IPV+ V+A   + D+    K G + YI+KP S    +  +  +I 
Sbjct: 61  YEILKKIRDE---KDIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIA 117

Query: 122 E 122
           +
Sbjct: 118 K 118


>gi|319783842|ref|YP_004143318.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169730|gb|ADV13268.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 457

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N++L    +    +  L   NG +A+E     K DV+++D+ + ++ 
Sbjct: 1   MTARILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCENGKVDVVLLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D     IPV+ +TA     D  R  + G + +++KP++    M  +K  +
Sbjct: 61  GFEVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+++++ + +++  + ++         T +       A +   + +++     +   L 
Sbjct: 157 KVLLIDERKTSVERIQKMLRDR-ADLDVTHDPHAGFFQAAETSYECVMISTAFADFDPLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +P+I +     +    R  + G   Y+ +PI        ++  +  
Sbjct: 216 LCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274


>gi|284050575|ref|ZP_06380785.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira platensis str. Paraca]
          Length = 487

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N++L ++++   GY      +G  AL    + +PD+I++DI + E+ G +
Sbjct: 18  TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTRFRPDLILLDIMMPEMDGYQ 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + IK++ E Q+IPVI +TA     D+ +  + G   Y++KP  +   +  I+  +
Sbjct: 78  VCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQL 134


>gi|161621454|ref|NP_102571.2| response regulator PleD [Mesorhizobium loti MAFF303099]
          Length = 457

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N++L    +    +  L   NG +A+E     K DV+++D+ + ++ 
Sbjct: 1   MTARILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCENGKVDVVLLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D     IPV+ +TA     D  R  + G + +++KP++    M  +K  +
Sbjct: 61  GFEVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 62.8 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+++++ + +++  + ++           +       A +   + +++     +   L 
Sbjct: 157 KVLLIDERKSSVERIQKMLRDR-ADLDVIGDPHAGFFQAAETSYECVMISTAFADFDPLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +P+I +     +    R  + G   Y+ +PI        ++  +  
Sbjct: 216 LCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274


>gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 257

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++V+D     ++    ++ SGY  +   +G +ALEL    +PD++++D+ + ++ G
Sbjct: 12  TATLLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVMMPKLDG 71

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ +S    +P++ +++     ++      G + Y+SKP S       I + +G
Sbjct: 72  FAVCRRLRAESA---VPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILG 128

Query: 122 E 122
            
Sbjct: 129 R 129


>gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium ulcerans Agy99]
 gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans
           Agy99]
          Length = 232

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    +  R  +  +GY      +G+EALE+    +PD +++D+ +  + 
Sbjct: 1   MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +
Sbjct: 61  GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +     + + GY      +G+  L LAR+  PD+ ++D  L  +S
Sbjct: 1   MTAHILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI ++++       IPVI +TA     D       G + Y+ KP S+   +  I+ ++
Sbjct: 61  GLEICRRLRATGN--SIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 242

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IVED     +L    +  +G+      +G EAL    +   D I++DI L  I
Sbjct: 1   MAKLHILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLAREAFDCILLDIMLPGI 60

Query: 60  SGLEITKQIKEDSELQEI--PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           SGLE+ + I+++    +   P+I +TA   + D     + G + YI+KP S  + +  +K
Sbjct: 61  SGLEVCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 AVVRR 125


>gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
 gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
          Length = 229

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED +    L +  +E  GY      +G E +    +  PD+I++D  L ++S
Sbjct: 1   MQPYILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLPKLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  +E + +P+I +TA   + D  R    G + Y++KP S++     I+  +
Sbjct: 61  GIEVCRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 233

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D +    + +  +   GY  L   +G EAL +     PD++I+D+ L EI G
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I++      +P+I ++A   + D+    + G + Y++KP S       +K  + 
Sbjct: 61  LEVARTIRK---TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229590586|ref|YP_002872705.1| putative sensory box GGDEF/EAL domain-containing protein
           [Pseudomonas fluorescens SBW25]
 gi|229362452|emb|CAY49358.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
           fluorescens SBW25]
          Length = 409

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 59/119 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D     KL   L++  GY  L   +G EAL+L  Q  PD+I++DI +  + G 
Sbjct: 6   ATLLIVDDEPQVRKLLETLLQHEGYQTLTAGSGEEALQLVAQQPPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K D     IP+I ++A +         + G E +ISKP+        ++  + 
Sbjct: 66  EVASQLKGDETTAGIPIIMLSALSEPSARVNGLEAGAEEFISKPVERVELWLRVRNLLR 124


>gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3]
 gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+ A++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSNILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   ++++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 358

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    + +    +   GY   +  +G EAL+     +PD+I++D+ L  +SGLE
Sbjct: 133 KILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALKKVDIVQPDLIVLDLMLPGLSGLE 192

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+   +   +P+I +TA   + D       G + YI+KP S    +  ++  +  
Sbjct: 193 VCKKIR---DSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRR 248


>gi|254413625|ref|ZP_05027395.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC
           7420]
 gi|196179732|gb|EDX74726.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC
           7420]
          Length = 379

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 59/120 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D+     L +  +   GY      NG E LEL +Q +P ++I D  +  ++G
Sbjct: 1   MTQILIIDDDPAIQILLKRTLHNQGYDVTIASNGEEGLELVQQLRPALVICDWIMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +QIK    L     I +T+    GD  +    G + +I KPI ++     ++  + 
Sbjct: 61  LEVCRQIKATPALSTTMFILLTSLGSVGDRVKGLDAGADDFICKPIEIAELQARVRSGLR 120


>gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1207

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGLE 63
           ++IV+D  +N+ L  + +    Y  +Q  NG +AL+ LA+   PD+I++D+ +  ++G E
Sbjct: 741 ILIVDDEPVNLTLLSNQLSLHNYQVIQANNGQKALDILAQDFLPDLILLDVMMPGMTGYE 800

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +T++++E   L ++P+I +TA     D     + G   Y+SKP      +  IK +I
Sbjct: 801 VTQKVRETWLLHQLPIIMLTAKNRVSDLVMGLEVGANDYLSKPFHKKELLARIKTHI 857


>gi|268325500|emb|CBH39088.1| conserved hypothetical protein containing response regulator
           receiver domain [uncultured archaeon]
          Length = 170

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    +   +  +E   +  ++ ++G+EALE  R   PD++++D+ L +I+G E
Sbjct: 49  KILIVDDELDTLLPLKRALEMEDFNVVEAQDGIEALEKVRSEIPDLVLLDLMLPKINGFE 108

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K D     IP+I +TA     D+    + G + Y++KP +L      IK  +  
Sbjct: 109 VCQRLKHDEATSYIPIIMLTAKGETSDKVEGIEIGADDYVTKPFNLDELKARIKAVLRR 167


>gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 228

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + ++ED+E   +L     +  G+      NG  A E  ++ KPD +++D+ + EI G
Sbjct: 1   MALIYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHIKEDKPDAVVLDLMMPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  K ++ D E+   P+I +TA + + D+    + G + Y++KP S    +  +K  I 
Sbjct: 61  LEFCKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVIR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|78486516|ref|YP_392441.1| response regulator receiver (CheY-like) modulated metal dependent
           phosphohydrolase [Thiomicrospira crunogena XCL-2]
 gi|78364802|gb|ABB42767.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Thiomicrospira crunogena XCL-2]
          Length = 348

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D   N+++   L+   GY      +G EAL LA ++  D+I++DI +  + G E
Sbjct: 6   HILIVDDISENIQVAMSLLREEGYQFSFATDGEEALRLADENDFDLILLDIMMPRMDGYE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K ++  Q+IP+I +TA        +  K G   YI+KP      +  +K ++
Sbjct: 66  TCRRLKANARTQDIPIIFLTAKVDIDAISKGFKLGAVDYITKPFHGEELIARVKTHL 122


>gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 235

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +   +L +  +E +G+  L   NG EALE    +  D++++D+ L EI G
Sbjct: 1   MGKILIVEDEKNIRELVKFNLEGAGFKVLTASNGKEALEKISTN-IDLVVLDLMLPEIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++ D +L++I +I +TA   + +     + G + Y++KP S    +  IK    
Sbjct: 60  MEVCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D E  +   RD +E   Y      +G EALE  + + PD+I++DI +   +
Sbjct: 1   MREKILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIKLY-PDLILLDIMMPGKN 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+   I+   ++   P+I +TA   + D  +    G + YI KP SL      I  ++
Sbjct: 60  GYEVCNDIR---DIVSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
 gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
          Length = 227

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I +D +   ++ +  +E  G++ + T +G  AL    +  PD+II+D+ L EIS
Sbjct: 1   MTKQILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEENPDLIILDLMLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+++S    +P+I +TA     D+    + G + Y++KP      +  +K  +
Sbjct: 61  GWDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 253

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I +D     ++    +   GY  +   +G EAL L     PD++++D+ + +++G  
Sbjct: 15  KILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETENPDLVVLDVMMPKLNGYG 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+  SE   +P+I +TA     D     + G + Y++KP S       I+  +  
Sbjct: 75  VCQKIRTQSE---VPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRR 130


>gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 214

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IV+D+          +E  G++     +G+       Q  PD+I+ DI + ++ G
Sbjct: 1   MQKILIVDDDRTLRAAITRYLEDRGFVVNSAASGLAGFNSFSQEVPDLIVSDIVMPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+  +I+     Q +P I ++A +   D  +    G + Y+ KP      +  I+  + 
Sbjct: 61  FELCTKIRNTDAGQLLPFIFLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKIEAQLA 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 233

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++I +D     +L +D +    Y AL  R+G EALEL R ++P ++I+DI +  +
Sbjct: 1   MTKEKILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++I+ +S    +P+I ++A   + D+      G + YI KP S    +  +K  
Sbjct: 61  DGMEVCRRIRAES---NVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D  +   L    +   G+      +G++AL  A    PDV+I+D+Q+  + GLE
Sbjct: 10  RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++       +PV+ +TA     D     + G + Y++KP  L      ++  +  +
Sbjct: 70  TLERLRAHD--PHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRS 127


>gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 242

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  ++L    +   GY      +G  AL+LA     D I++DI L ++ 
Sbjct: 1   MKKQVLLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHYDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I+      E P++ V+A + + D+    + G + Y++KP S    M  +K  +
Sbjct: 61  GIEVCKRIRAKGI--ETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|284046821|ref|YP_003397161.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951042|gb|ADB53786.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 235

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED +   +L R L+E +G+   +  NG+EAL L +   PD+I++D+ + E+ G
Sbjct: 3   MAEVLVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLLKSATPDLIVLDVTMPELDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  ++I+   +L E+PV+ +TA A + D+ R  K G + Y++KP      +  ++  + 
Sbjct: 63  WQTLERIR---DLTEVPVLMLTARAGELDKVRGLKSGADDYVTKPFGRQELLARVEALLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 235

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 3   MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 63  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 235

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 3   MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 63  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|119488053|ref|ZP_01621497.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119455342|gb|EAW36481.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 469

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N+K+  D ++  G+  L  ++G   L    + KPD+I++D+ +  + G E 
Sbjct: 9   ILIVDDNPTNIKVLSDFLKDFGFKVLIAKDGESCLHKLEKIKPDLILLDVMMPGVDGFET 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++IK     ++IPVI +TA     D+ +    G   YI+KP+     +  +  ++
Sbjct: 69  CRRIKALDSTKDIPVIFMTALTDPVDKLKGFTLGAVDYITKPLQHEEAIARVNVHL 124


>gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1]
 gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 248

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +G +  +L ++    ++++D+ L    G+ 
Sbjct: 15  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIA 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+++E++   +IP+I +TA     D     + G + Y+ KP +    +  IK  +  
Sbjct: 75  ICKRLREEN--SDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 131


>gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 228

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ +D      + +  ++  GY A    NG E LE+ + ++ D++I+D+ + ++ G
Sbjct: 1   MNRVLVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  +++++      IPVI +TA   + D     + G + Y+ KP S+   +  +K  + 
Sbjct: 61  FETLRELRK---FSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
          Length = 231

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    +  R  +  +GY  +   +G EAL   +  +PD++I+D+ + ++ GLE
Sbjct: 2   KILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMPKLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   E  + P++ +TA     +       G + Y++KP +L   +   +  +  A
Sbjct: 62  VCRELRSQGE--DTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRRA 119


>gi|224370414|ref|YP_002604578.1| two-component transcriptional regulatory protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693131|gb|ACN16414.1| two-component transcriptional regulatory protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 368

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 5/125 (4%)

Query: 1   ML-----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55
           M+       +++V+D   N++L   L+   GY      NG  ALEL  +  PDVI++D+ 
Sbjct: 1   MMDIPGSPTILVVDDEPRNLRLMEALLIPMGYRVQLVENGEAALELLEKISPDVILLDVM 60

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           +  + G E+ +Q+K   + + +P++ VTA     D  +  + G + +++KP+  +     
Sbjct: 61  MPGMDGYEVARQVKSREKTRSVPIVMVTALREVTDRVKALEAGADDFLTKPVDKTELTAR 120

Query: 116 IKKYI 120
           ++  +
Sbjct: 121 VRSLV 125


>gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 239

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M KK +++++D    ++L    ++  GY  L+  +  EAL++   +  D+ I+DI L  +
Sbjct: 1   MAKKNILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDVDMFIVDIMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ + ++   + +  PVI ++A + + D+    + G + YI+KP S+   +  I+  
Sbjct: 61  DGFELVRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAI 120

Query: 120 IGE 122
              
Sbjct: 121 FRR 123


>gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 248

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +D     ++    +   GY  +   +G EAL+L R  +PD++++D+ + ++ G  
Sbjct: 10  TILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 125


>gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +L +D +E SG+      +G + L +A     D++I+D+ L  + G
Sbjct: 1   MSRILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHEDFDLVILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++++E   ++  P+I V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICRKVRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|258627290|ref|ZP_05722076.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM603]
 gi|258580473|gb|EEW05436.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM603]
          Length = 769

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G E LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 365 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 424

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 425 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 479


>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
 gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
          Length = 1547

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 7/126 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQLQEI 59
            +V++VEDN +N  + R +++  G +     NG+EAL+  +  +      +++MD Q+ E+
Sbjct: 1263 RVLLVEDNPVNQDVARMMLDDVGVVVTTAGNGVEALDALQSAQQWDLYSLVLMDCQMPEM 1322

Query: 60   SGLEITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             G E T+ I+        ++IP+IA+TA AMKGD+ER    G + YISKPI   +  + +
Sbjct: 1323 DGYETTRSIRAGKAGEIYKKIPIIAMTANAMKGDKERCFAAGMDDYISKPIDPQVLEDRL 1382

Query: 117  KKYIGE 122
            +K++  
Sbjct: 1383 RKWLPR 1388



 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 6/123 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57
            K V+++EDN+   +L    +++ G       +G + L   +  K     PDV+++D  L 
Sbjct: 1109 KSVLLIEDNKSVRELVYRWLDSWGANVFAAEDGAQGLARCQDLKALNNLPDVVLIDQYLP 1168

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + +G ++ KQ+       ++PV+ ++    +G+ ++    G   Y++KP++ +  +E++K
Sbjct: 1169 DQTGCDLAKQMLGIEGCADLPVLILS-RIAEGELQKFCDAGARGYVAKPLTRAGLVESVK 1227

Query: 118  KYI 120
              +
Sbjct: 1228 VLL 1230


>gi|85860919|ref|YP_463121.1| response regulator receiver domain-containing protein [Syntrophus
           aciditrophicus SB]
 gi|85724010|gb|ABC78953.1| response regulator receiver domain and a sigma factor phosphatase
           domain [Syntrophus aciditrophicus SB]
          Length = 402

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 62/118 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I++D+     L    +  +GY   +  +G + L   +  KPD+I++DI +  I 
Sbjct: 1   MKEKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKAWKPDLILLDIVMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           G ++ + IK DS  ++IPVI ++A +   D+ +    G   YI+KP      M  I+ 
Sbjct: 61  GYQVCRSIKGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPFDRGEVMARIEN 118


>gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED      +  D +E  GY  L   +G+EALEL +  + D+I++DI + ++ 
Sbjct: 1   MKKTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I++      + +I +TA + + D+    + G + YI+KP SL + +  I   +
Sbjct: 61  GLSVCRTIRKQD--SRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALL 118

Query: 121 GEA 123
             A
Sbjct: 119 KRA 121


>gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
 gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
          Length = 237

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL+L  Q+  +++I+DI + ++
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 224

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED+     +  D ++   Y      +G +  +L      D+I++D+ L ++ G+ 
Sbjct: 2   RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++      IPV+ +TA     D+      G + Y+ KP  L      I+  +  
Sbjct: 62  LCQRLRKSG--YAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRR 118


>gi|254414953|ref|ZP_05028716.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178100|gb|EDX73101.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1317

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D   N+KL  D +  +G+     ++G + L+L  +  PD+I++D+ + ++ G E 
Sbjct: 10  ILVIDDTPENLKLVSDFLRDAGFEVRIAKSGEQGLKLLEKLNPDLILLDVMMPDMDGFEA 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMK---GDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K   + ++IPVI +TA         + +    G   YISKPI L   +  +K ++
Sbjct: 70  CRHLKAWEKTKDIPVIFMTAAVDTSNCEAKVKGLSLGAVDYISKPIQLDEVLARVKIHL 128


>gi|148241355|ref|YP_001226512.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849665|emb|CAK27159.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 260

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +L    +E SG+   +  +G++   LA Q+ PD+I++D+ L  + GL +
Sbjct: 5   ILLIEDDRDMRELVAGNLEHSGFDVQKADDGIKGQALALQYIPDLIVLDLMLPRVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D    +IP++ +TA A   D+      G + Y++KP  L   +  +K  +  +
Sbjct: 65  CQRLRRDDRTAQIPILMLTALAGTKDKVTGFNSGADDYLTKPFELEELLARVKALLRRS 123


>gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 747

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+DN +N+ L  D +E  GY  +    G EALE     +PD++++D+ + +I G E
Sbjct: 12  TILVVDDNPVNLGLVADHLELRGYQVVVALGGNEALERVAFARPDLVLLDVMMPDIDGFE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K  ++ ++IPVI +TA      +      G   Y+SKP  +   +  ++ ++
Sbjct: 72  TCRRLKAQADYKDIPVIFMTALTDVDSKVAGFAAGGVDYVSKPFQIEELLARVQTHL 128


>gi|294775873|ref|ZP_06741372.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294450242|gb|EFG18743.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1344

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN    +  R       Y  +  ++G E  ELA+   P++I+ DI +  + G+E+
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K+IKED     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208


>gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 623

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 74/117 (63%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+DN  N+ +F   +   G       +G EA+ L+R  +PDVI+MD+Q+  + GLE
Sbjct: 495 RVLLVDDNPGNLDMFATYLRIRGCDVRTAGSGAEAIALSRMPRPDVILMDVQMPGMDGLE 554

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++++ D  L+ +P+IA+TA AM GD E+  + G + Y++KP+ L     T+ +++
Sbjct: 555 TTRRLRSDPALRAVPIIALTALAMPGDREQCLEAGMDDYLTKPLGLKELHATVAQWV 611


>gi|237708643|ref|ZP_04539124.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229457343|gb|EEO63064.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1344

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN    +  R       Y  +  ++G E  ELA+   P++I+ DI +  + G+E+
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K+IKED     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208


>gi|212691763|ref|ZP_03299891.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855]
 gi|212665664|gb|EEB26236.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855]
          Length = 1344

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN    +  R       Y  +  ++G E  ELA+   P++I+ DI +  + G+E+
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K+IKED     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208


>gi|239827082|ref|YP_002949706.1| response regulator receiver protein [Geobacillus sp. WCH70]
 gi|239807375|gb|ACS24440.1| response regulator receiver protein [Geobacillus sp. WCH70]
          Length = 166

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D +  + L    +   GY  ++  +G+ A++    +K D++++DI + E+ G
Sbjct: 1   MYTILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I+E     ++P+I VTA     D  +    G + YI+KP   +  +  I+  + 
Sbjct: 61  WETCQRIRE---FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|150003100|ref|YP_001297844.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931524|gb|ABR38222.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1340

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN    +  R       Y  +  ++G E  ELA+   P++I+ DI +  + G+E+
Sbjct: 1090 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1148

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K+IKED     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1149 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1204


>gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           ATCC 824]
 gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           EA 2018]
          Length = 233

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + V++V+D +    L    +   G+  ++  NG+EALE+ +  +  ++++DI + ++ G
Sbjct: 3   SRTVLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +    +I+ED   +  P+I ++A     D+      G + YISKP +    +  +K  I 
Sbjct: 63  ITTCMKIRED---KNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 229

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I++D+E  + + R  +   GY  L   NG E L      +PD++++D+ + ++ 
Sbjct: 1   MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++E      +PV+ +TA     +  +    G + Y+ KP +L   +  ++  +
Sbjct: 61  GFEVCRRMREGGST--VPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|299148439|ref|ZP_07041501.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298513200|gb|EFI37087.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1446

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDNE      + ++ +  Y  +   NG E L+ A    PD+II D+ +  + GLE+
Sbjct: 1189 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +QIKE++ +  IP+I ++A A   D     + G + YI+KP S +     +   + +
Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305


>gi|293370405|ref|ZP_06616959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292634553|gb|EFF53088.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1417

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDNE      + ++ +  Y  +   NG E L+ A    PD+II D+ +  + GLE+
Sbjct: 1160 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1218

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +QIKE++ +  IP+I ++A A   D     + G + YI+KP S +     +   + +
Sbjct: 1219 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1276


>gi|260171744|ref|ZP_05758156.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
 gi|315920056|ref|ZP_07916296.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313693931|gb|EFS30766.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1446

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDNE      + ++ +  Y  +   NG E L+ A    PD+II D+ +  + GLE+
Sbjct: 1189 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +QIKE++ +  IP+I ++A A   D     + G + YI+KP S +     +   + +
Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305


>gi|237721203|ref|ZP_04551684.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448999|gb|EEO54790.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1446

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDNE      + ++ +  Y  +   NG E L+ A    PD+II D+ +  + GLE+
Sbjct: 1189 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +QIKE++ +  IP+I ++A A   D     + G + YI+KP S +     +   + +
Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305


>gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 236

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 1   ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M+  K V+IV+D +    L    +++ GY+ ++  NG EAL + R+   D++I+D+ + +
Sbjct: 1   MMGNKTVLIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G++   +I+E+   +E+P+I ++A +   D+      G + YI+KP +    +  +K 
Sbjct: 61  LNGIDTCLKIREE---REMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKS 117

Query: 119 YIGE 122
            +  
Sbjct: 118 QLRR 121


>gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 234

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L ++ +E   +I     +G+ ALEL ++ +PD+II+D+ L ++ GLE+
Sbjct: 3   ILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQQPDLIILDLMLPKLDGLEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I++ S  ++  ++ +TA     D       G + Y+ KP S    +  ++  +  +
Sbjct: 63  CTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRS 121


>gi|160886917|ref|ZP_02067920.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483]
 gi|156107328|gb|EDO09073.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483]
          Length = 1446

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDNE      + ++ +  Y  +   NG E L+ A    PD+II D+ +  + GLE+
Sbjct: 1189 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +QIKE++ +  IP+I ++A A   D     + G + YI+KP S +     +   + +
Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305


>gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 229

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M KK   +++V+D    +++    + + GY     +NG+EA+  A++  P +II+D+ + 
Sbjct: 1   MKKKDIKILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKHPHLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  + I+    LQ   +  +TA      +      G +  I+KPI   + +  +K
Sbjct: 61  EMDGIEACEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|317479680|ref|ZP_07938804.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|316904181|gb|EFV26011.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 885

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VEDNE  ++L   L++   Y      NG EA+ +      D+I+ D+ +  + G+E
Sbjct: 633 TILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNEDIDLIVSDVMMPVMDGIE 691

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K   EL  IPVI +TA   + D     + G +A+ISKP +L++    I+  +
Sbjct: 692 FCRYVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLL 748


>gi|119945946|ref|YP_943626.1| response regulator GltR [Psychromonas ingrahamii 37]
 gi|119864550|gb|ABM04027.1| response regulator GltR [Psychromonas ingrahamii 37]
          Length = 241

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++++D++   +L  + +  + +  +   +G+E  +    H+PD+II+DI L    G 
Sbjct: 5   KQVLVIDDDQAIRELLAEYLSKNNFDVITAEDGLEMDKQRLIHQPDLIILDIMLPGDDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++      +P+I +TA + + D     + G + YI+KP S    +  IK  +  
Sbjct: 65  ILCQRIRQ---TSHVPIIMLTANSDEMDRVLGLEIGADDYIAKPFSPRELLARIKALLRR 121


>gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I++D  + +K  +  +E  GY      +G E L  A     D+II+DI L +I+
Sbjct: 1   MAKKILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHYDLIILDIMLPKIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++E S    +P+I +TA     D+    + G + Y++KP ++      +K   
Sbjct: 61  GLEVCRQVREQS---SVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D      L +  +E + Y      +G  A +LA Q + D I++D+ L  + G
Sbjct: 1   MTKILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + K +++D      PVI VTA   + D     + G + YI+KP S    +  +K  + 
Sbjct: 61  MTVLKTLRQDKI--STPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1610

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N K+   ++E  GY      NG EA+    + +  +I+MD Q+ E+ G E
Sbjct: 1482 RLLLAEDNPVNQKVACKMLEKLGYRVDVAGNGQEAVAAHERSRYPLILMDCQMPEVDGFE 1541

Query: 64   ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T  I++        P++A+TA AM+GD ER    G + YI+KP+        +  ++G 
Sbjct: 1542 ATALIRKMEGRSAHTPIVAMTANAMQGDRERCLAAGMDDYIAKPVRPKELQAILDTWLGT 1601

Query: 123  A 123
            A
Sbjct: 1602 A 1602



 Score =  100 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
            +++++V+  +   +  R  + + G      ++G EA+ELAR     Q+  D+ ++++ L 
Sbjct: 1327 RRILLVDHCDTVRQAMRQELTSHGMNCTVAQSGPEAVELARTAAASQNPFDLALIELHLS 1386

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
            ++ G E    +K+      I +I +T    +GD +  R  G +AY++KP+  + 
Sbjct: 1387 DMDGFETAALLKQGPATAGIRLIILTTVGRRGDGQTARSIGIDAYLTKPLRQAQ 1440


>gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
 gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
          Length = 236

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++VED +         +E   Y      +G EALE   +H  D++I+D+ L  + G
Sbjct: 5   TRRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+++S   ++P+I +TA     D     + G + Y+ KP S    +   +  + 
Sbjct: 65  ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|77460200|ref|YP_349707.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
 gi|77384203|gb|ABA75716.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
          Length = 778

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + ++   G   +   +G+EAL+     + D+++MD  +  + G E
Sbjct: 656 RVLLVEDNPVNQLVAKGMLGKLGCDVVVAAHGVEALDQLEHDEFDLVLMDCNMPVMDGYE 715

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++QI++      +P++A+TA AM  + ER R  G   Y++KP         + ++I
Sbjct: 716 ASRQIRQSGRWPHLPIVALTANAMSEERERCRAAGMSDYLAKPFRREELAALLDQWI 772


>gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 232

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K ++V+D +L +K  +  +E   Y      +G EAL++A++ + D++++D+ L E+ 
Sbjct: 1   MMNKALVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+E     E+P+I +TA     D+    + G + YI+KP ++      IK  I
Sbjct: 61  GMEVCQAIRE---FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAII 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 234

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+I+ED+    +L RD +E +G++     NG + L+ A + + D+I++D+ L  I G
Sbjct: 1   MKKVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++ +   ++ PV+ V+A     D+ R    G + YI+KP S S  +  +K +IG
Sbjct: 61  FEVLRKVRAE---KDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIG 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+    +L    +    Y      +G EAL +  + +P ++++D+ L  + G 
Sbjct: 5   QRILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLMLPGMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++      ++P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREMRS---ASQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 237

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D +    + +  +   GY  +   +G EAL+   + +PD++++DI L +  
Sbjct: 1   MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEEQPDLMLLDIMLPKRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  +    P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
 gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
          Length = 233

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+E   +L    +    +      NG +AL     ++P++I++D+ L  I G 
Sbjct: 5   QRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S    +P+I ++A     D+    + G + YI KP      +  ++  +  
Sbjct: 65  QVCREIRAKSG---VPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRR 121


>gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 248

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +D     ++    +   GY  +   +G EAL+L R  +PD++++D+ + ++ G  
Sbjct: 10  TILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 237

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+ K +++V+D +    + +  +   GY  +   +G EAL+   + +PD++++DI L + 
Sbjct: 1   MMDKTILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEEQPDLMLLDIMLPKR 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ +++++  +    P+I +TA   + D+    + G + Y++KP S    +  +K  
Sbjct: 61  DGMEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKAN 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
 gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
          Length = 234

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D    + L    ++ + Y  +   NG++A++  ++ + D +IMD+ L ++ 
Sbjct: 1   MAMTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E TKQI++ +E  +IP+I +TA + + D+    + G + Y++KP S    +  IK  +
Sbjct: 61  GVEATKQIRKFNE--QIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++V+D+    ++   ++ET GY      +G  ALE     +PD++++D+ L  + 
Sbjct: 1   MTAKVLVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAATQPDLVLLDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI   I++ S   ++P++ +TA +   D     + G + Y+ KP      +  +K  +
Sbjct: 61  GIEICSLIRQKS---DVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 256

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  I G
Sbjct: 23  MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 82

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 83  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 139

Query: 122 E 122
            
Sbjct: 140 R 140


>gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+ + ED+     L +  +E  GY      +G +ALE    +  D++I+DI +  ++G
Sbjct: 1   MFKIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINHFDLVILDIMMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +Q++  S  + +P++ +TA +   D+    K G + Y++KP      +  I+  + 
Sbjct: 61  IELCRQLR--SSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6]
 gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae
           TIGR4]
 gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39]
 gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54]
 gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397]
 gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457]
 gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458]
 gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae]
 gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39]
 gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54]
 gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV104]
 gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV200]
 gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458]
 gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457]
 gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397]
 gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 235

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  +KL    +   G+      NG +AL LA     D I++DI L ++ 
Sbjct: 1   MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++      + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     K     ++  GY      +G   L  AR+ +PD++I+D  L  +S
Sbjct: 1   MTHHILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI ++++   +  ++P+I +TA     D       G + Y+ KP SL   +  ++ ++
Sbjct: 61  GLEICRRLRSTGD--KVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 234

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D     ++ R  ++ +G   ++ R+G EAL      +PD+I++D+ + E  
Sbjct: 1   MAHRILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAADRPDLIVLDVGMPEFD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++I++     ++P++ ++A   + D     + G + Y++KP S    +  +   +
Sbjct: 61  GLDVCREIRK---GSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 233

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+E   +L    +    +      NG +AL     ++P++I++D+ L  I G 
Sbjct: 5   QRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S    +P+I ++A     D+    + G + YI KP      +  ++  +  
Sbjct: 65  QVCREIRAKSG---VPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRR 121


>gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1079

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++IVEDN  N  + R +++  G   +    NG EAL++  +   D+++MD ++ E+ G 
Sbjct: 821 RILIVEDNPTNQMVARAVLKKLGLTNSTVANNGREALDILARENFDLVLMDCRMPEMDGF 880

Query: 63  EITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T++I+E     +  ++P++A+TA AMKGD E+  + G   Y+SKP+      E I + 
Sbjct: 881 EATRRIREGKNSVQNPQVPIVAMTAHAMKGDREKCIQAGMSDYLSKPVQPQELEEIINRQ 940

Query: 120 IGEA 123
           +  A
Sbjct: 941 LRPA 944


>gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 236

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D    + L    +E  GY    + +G    ELA  ++ D II+D+ L  + G
Sbjct: 1   MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEITK ++ +    + P++ +TA   + D+    + G + Y++KP S    +  +K    
Sbjct: 61  LEITKALRREKI--DTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|307152260|ref|YP_003887644.1| AraC family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306982488|gb|ADN14369.1| two component transcriptional regulator, AraC family [Cyanothece
           sp. PCC 7822]
          Length = 265

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 72/121 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++++ED++LN  L ++ +E+ G+  +   NG++ L+ ARQH PD+I+ DI + E+ G
Sbjct: 1   MTRILLIEDDDLNCTLLQECLESEGFHIISAENGLQGLQQARQHLPDLILCDIMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  Q+++D     IP I +TA   K ++ R  + G + Y++KP++    +  ++  + 
Sbjct: 61  YSVLLQLRQDPITAFIPFIFLTAKTTKAEQRRGMELGADDYLTKPLTAEEVIAAVEARLE 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 245

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +  +  +E SG+  +   N  +AL+L    +P +II DI +  + G 
Sbjct: 16  ARILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTTQPQLIISDIMMPGMDGY 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   Q+++      +PV+ +TA  M  D  +  + G +AY+ KP      +  +   I  
Sbjct: 76  QFLAQVRKLDPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 135

Query: 123 A 123
           +
Sbjct: 136 S 136


>gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
          Length = 229

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D      +    +    +  +   +  EA        PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++ +++   +EIP+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|298493029|ref|YP_003723206.1| response regulator receiver protein ['Nostoc azollae' 0708]
 gi|298234947|gb|ADI66083.1| response regulator receiver protein ['Nostoc azollae' 0708]
          Length = 121

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED+    ++  DL++ SG       +G+EALE  +   PD++++DI +  ++G
Sbjct: 1   MSTVLIVEDSIAQREMITDLLKASGLTVTHAGDGVEALEAIQSTPPDLVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + Q +PV+  ++   + D     K G +AYI+KP   +  + T+K+ + 
Sbjct: 61  YELCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120


>gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
 gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +L +K  R  +E  G       +G EAL+L R++K ++I++D+ L ++ 
Sbjct: 1   MSRKVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +Q++E     ++P++ +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GFQVCQQVRE---FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|75908368|ref|YP_322664.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75702093|gb|ABA21769.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 407

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+K+  D++  +G+     +NG+ AL   ++  P++I++D+ +  + G E 
Sbjct: 9   VLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMDGFET 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K + + ++IPVI +TA +   ++ +  + G   YI+KPI     +  I  ++
Sbjct: 69  CRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHL 124


>gi|17231256|ref|NP_487804.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132898|dbj|BAB75463.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 369

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D   N+ L + ++E+ GY      +G+ AL+   Q  PD+I++D+ +  + G E
Sbjct: 11  RILAVDDTRDNLILVQTILESEGYEIDLASDGISALQKVEQSPPDLILLDVMMPGMDGYE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+ +  L  IP++ +TAF  +         G + +I KP      +  ++  + 
Sbjct: 71  VTRRIRNNPALSYIPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLR 127


>gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 236

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+    +L    +    +  +   +G EAL +  + KP+++++D+ L  + G 
Sbjct: 5   QRILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLMLPGMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++  S    +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  SVCREMRAQSP---VPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
 gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++IV+D+E   +L    +    +  +   +G  AL     +KP++I++D+ L  I
Sbjct: 1   MNKQKILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ ++I+  S     P+I ++A     D+    + G + YI KP      +  +K  
Sbjct: 61  DGYQVCREIRTRS---NTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis]
 gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus
           faecalis 62]
          Length = 236

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D    + L    +E  GY    + +G    ELA  ++ D II+D+ L  + G
Sbjct: 1   MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEITK ++ +    + P++ +TA   + D+    + G + Y++KP S    +  +K    
Sbjct: 61  LEITKALRREKI--DTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+ +V+D++   ++    +E  G+   Q  +G  AL+  ++  P ++I+DI L  I G+
Sbjct: 5   RKIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++     ++P+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 65  ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121


>gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H  D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|126658533|ref|ZP_01729680.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cyanothece sp. CCY0110]
 gi|126620120|gb|EAZ90842.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cyanothece sp. CCY0110]
          Length = 416

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 61/118 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D   N+K+    +  +G       NG  AL+      P++I++D+ + EI G 
Sbjct: 8   KHILIVDDKPTNLKVLATTLTEAGLDIAVATNGKMALQQVANDPPELILLDVLMPEIDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  KQ+K + E ++IP+I +TA +   D+ R    G   YI+KP      +  I  ++
Sbjct: 68  ETCKQLKANPETKDIPIIFMTALSDTIDKVRGLSLGAVDYITKPFETEEVIARINTHL 125


>gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 233

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|328949557|ref|YP_004366892.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449881|gb|AEB10782.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 222

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     ++    +   G+   +  +G  ALEL R  +PD+I++D+ +    GLEI
Sbjct: 6   ILIVEDEPRLAEVLERYLRREGFRTERATDGRRALELWRATRPDLILLDLMVPGPDGLEI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           T+ +++     ++P+I VTA A + D     + G + Y++KP S    +  +K  +  A
Sbjct: 66  TRTLRK---TSDVPIIMVTARAEETDRLVGLELGADDYVTKPFSPREVVARVKAVLRRA 121


>gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 239

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +    + +  +E  GY  +   +G+EA +LA   +PD+I++D+ L    
Sbjct: 1   MQGKILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSEQPDLILLDLMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++++   E    P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMDVCREVRAKLET---PIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H  D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 230

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 59/120 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D    ++L    ++  GY      NG +A+  AR+  PD+II+D+ + ++ G+
Sbjct: 6   QKILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARKTSPDLIILDVMMPKMDGI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + ++   E +   ++ +TA   +  E      G + YI KPI     +  I   +  
Sbjct: 66  EACRIMRGMPEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAILRR 125


>gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
 gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
          Length = 226

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  + +++VED     +L R  +E  G+  L+  +G + LELAR+H P +II+D+ L  +
Sbjct: 1   MSAQHILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRHLPCLIILDVMLPAL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+++++   +E   IPV+ +TA   + D       G + Y+ KP S+   M  IK  
Sbjct: 61  DGFEVSRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAI 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +L +K  R  +   G       +G EALE+ + +  D++++D+ L +I 
Sbjct: 1   MARKILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + +Q++E      +P+I +TA     D+    + G + YI+KP ++      +K   
Sbjct: 61  GIAVCQQVRE---FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIF 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 229

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    +E  G+  L+  +G EAL +  +  PD+I++D  +  +SG+E
Sbjct: 7   TVLVVEDELAQREVLAYNLEADGFRVLRAEHGEEALLIVEEDMPDIIVLDWMMPNLSGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K  +E + IP+I ++A + + D+ R  + G + Y+ KP S+   M  ++  +  
Sbjct: 67  VCRRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125


>gi|119511740|ref|ZP_01630843.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463577|gb|EAW44511.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 412

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 64/119 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+ ++      L+   GY  ++  +G  AL + +Q +PD+I++D+ +  + G E
Sbjct: 95  TILVVDDHTMSRISAAALLSMEGYEVIEAESGHTALLMVKQKQPDLILLDVMMPIMDGFE 154

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K+D   + IP+I +TA   +    R  + G + ++SKP         +K  + +
Sbjct: 155 VCQRLKQDEHTRLIPIIFITALNDRRSRIRGIEVGADDFLSKPFDNVELTARVKSLVRQ 213


>gi|119484770|ref|ZP_01619252.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106]
 gi|119457588|gb|EAW38712.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106]
          Length = 455

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 69/116 (59%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  +L+++ GY  L   +G+EAL+LA+   PD++++D+ + E+ G E+
Sbjct: 8   ILIVDDEPANLILLEELLKSEGYEILLAASGIEALQLAKTTSPDLVLLDVMMPEMDGFEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +++D +L+  PVI +T+   +  + +  +   + YI+KP +  + +  +   +
Sbjct: 68  CDSLRKDEQLKVTPVIFLTSLDDEQSQIKGLELMGDDYITKPFNSRLLLAKVSSLL 123


>gi|150396149|ref|YP_001326616.1| response regulator PleD [Sinorhizobium medicae WSM419]
 gi|150027664|gb|ABR59781.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium medicae WSM419]
          Length = 455

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  L   +G  AL +  Q   D++++DI +  + 
Sbjct: 1   MTARILVVDDVPANVKLLEARLVAEYFEVLTAADGHAALAICEQTSVDLVLLDIMMPHMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K  S    IPV+ +TA     D  R  K G + +++KP++    M  +K  +
Sbjct: 61  GFEVCERLKASSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     +           +   AL  A ++  D++I++    +   L +
Sbjct: 156 VLLVDGRASSQERLTRALRPI-ADVAVLSDAQAALFEAAENSFDLVIVNANFDDYDPLRL 214

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + IP++ VT         R  + G   YI +P+  +  +      I  
Sbjct: 215 CSQLRSLERTRFIPILLVTEQGNDEMIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272


>gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 241

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +  +   +G EAL     + P+++++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDSYSPNLVLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S   + P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREIRAKS---DTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|300867045|ref|ZP_07111713.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300334942|emb|CBN56879.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1122

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           KV+IV+D  +N ++  + +    Y   +  NG EAL        PD+I++D+ + +++G 
Sbjct: 712 KVLIVDDEPINRQVLINNLSLYNYAITEASNGQEALTAMENGFIPDLILLDLMMPQMTGY 771

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++I+      E+P++ +TA     D     + G   Y+SKPI     +  IK +I
Sbjct: 772 EVCQKIRARFPTYELPIVMLTAKNQVADIVEGFESGANDYLSKPIQKQEMLARIKTHI 829


>gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
 gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
          Length = 239

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++VED +         +E   Y      +G +AL+   +H  D++++D+ L  + G
Sbjct: 6   TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLMLPRVPG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+++S   ++P+I +TA     D     + G + Y+ KP S    +  ++  + 
Sbjct: 66  ERVCRVIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|262403061|ref|ZP_06079621.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586]
 gi|262350560|gb|EEY99693.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586]
          Length = 368

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+DN  N  L   L++   Y  L   +G +AL +  + KPD++++DI + E+ G E
Sbjct: 6   TILIVDDNPENRALLAGLLKPH-YRLLVAVSGAQALAICHKQKPDLVLLDIMMPEMDGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + ++++ D ELQ+IPVI +TA +   DE+     G   YI KPIS  I +   + ++ 
Sbjct: 65  VCQRMRADPELQDIPVIFLTAKSQIEDEQHGFDVGAVDYILKPISPPILLARTRTHLR 122


>gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
 gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
          Length = 233

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++ +DN    ++ R L+   GY  ++ ++G E L+L      D+I++DI +  ++
Sbjct: 1   MQTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMN 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   +++E      +P++ +TA  +  D+      G + Y++KP S S     +K  +
Sbjct: 60  GYQTCLKLRE---TSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 1014

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N ++ + ++E  G       +G EAL        D++ MD Q+  + G 
Sbjct: 746 ARVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALTAYSHSPFDLLFMDCQMPNMDGY 805

Query: 63  EITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T+ I+ D +       P+IA+TA  + GD ER  K G + Y+ KP ++      + ++
Sbjct: 806 EATRAIRADEKQHHKTTCPIIAMTAHTLPGDRERCLKAGMDDYLGKPFTMRQVRTLLNRW 865

Query: 120 I 120
           +
Sbjct: 866 L 866



 Score = 67.8 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IV+ + L  +  +  +   G  A    +G +AL + +     +I++ + L ++ G E+ 
Sbjct: 607 LIVDPHPLTRRSVQQQLREWGIKAKTADHGKKALAMLQAQNFQIILVALTLPDMPGRELI 666

Query: 66  KQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
           +   + ++   + I  + +T   +             +Y++KPI  S  +
Sbjct: 667 QHCCDVAQTVPKHIITLGLTGQKLPPCRIS--DATTVSYLTKPIRPSKLL 714


>gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +D     ++    +   GY  +   +G EAL+L + + PD++++D+ + ++ G  
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKDYDPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++DS   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola
           F0402]
          Length = 228

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED+E      R  +E  GY  L   +G  ALEL     PD++++DI L +++G
Sbjct: 1   MNKVLIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIMLPQLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I++      +PVI +TA     D+      G + Y++KP  +   +  ++  I 
Sbjct: 61  LEVLRRIRK---TSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
 gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
          Length = 234

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E    +    ++  GY  +   +G +A+ELA    PD+I++D+ L +  G+E
Sbjct: 5   KILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLMLPKKDGME 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + IP+I +TA   + D+    + G + Y++KP S    M  +K  +  
Sbjct: 65  VCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120


>gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D++    L +  +E  GY  ++  NG EAL L  ++  D+II+D+ +  + 
Sbjct: 1   MKTNILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEALILINENNFDLIILDVMMPVLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+    +I+ED     +P+I ++A   +  +      G + YI+KP      +  +K  +
Sbjct: 61  GISACLKIRED---YTMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++++D+    +L R  +E  G+  L   NG++A+E  +   P+++++DI L    G +
Sbjct: 6   KVLVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAFKTFAPNIVVLDIMLPGADGWQ 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   +  IP+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 66  VCREIRQ---VSNIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLRR 121


>gi|312131620|ref|YP_003998960.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311908166|gb|ADQ18607.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1299

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VEDNE       D +    +   + RNG EA E    + PD+I+ DI +  +SGLE
Sbjct: 1051 KILVVEDNEDFRFYLLDNLREE-FALEEARNGEEAWEKVLSYHPDLIVSDINMPGMSGLE 1109

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++I+ D   + IPVI +TA +    +      G   YI KP ++ + +  ++  +
Sbjct: 1110 LCRKIRRDPRTKHIPVILLTAISSDSAQIEGLDSGASDYIIKPFNVELLLTKLRTQL 1166


>gi|119486033|ref|ZP_01620095.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
 gi|119456808|gb|EAW37936.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
          Length = 601

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 60/116 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D  +N++L   ++   GY   Q  NG  AL   +   P +I++DI + +I G E+
Sbjct: 13  ILIVDDTPMNLRLLSTMLSDQGYEVRQAINGKMALTAVQTCPPSLILLDIMMPDIDGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +K D +  +IP+I ++A     D+ +  K G   YI+KP      +  +K  +
Sbjct: 73  CSFLKNDPQTADIPIIFLSALDDVLDKVKAFKVGGVDYITKPFEFEEILARVKNQL 128


>gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium sp. M14]
          Length = 230

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KVMIVED E    L R  +E  GY+     +G EA  + ++  PD++I+D  L  +S
Sbjct: 1   MSPKVMIVEDEEALSVLLRYNLEAEGYLVETIGHGEEADIVLQESVPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++     + +PVI +TA   + +  R    G + Y+ KP S    M  ++  +
Sbjct: 61  GIELCRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVRALL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 231

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K++I+ED +   +     ++  GY      +G E L+   +  PD+I++DI L  I+G
Sbjct: 3   SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EI ++I++ S    +P+I VTA     D       G + Y++KP ++   +  I+  + 
Sbjct: 63  IEICRKIRQHS---NVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALR 119

Query: 122 EA 123
           ++
Sbjct: 120 KS 121


>gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 230

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +   +  R  +  +GY      +G++ALE+  + +P+++I+D+ +  + GLE
Sbjct: 2   KIVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVMMPRMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + +  P++ +TA     D       G + Y+ KP +L   +  ++  +  A
Sbjct: 62  VCRTLRSAGDDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119


>gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
 gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
          Length = 237

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  ++  GY  +   +G EALE+     PD++++D  L EI G
Sbjct: 1   MSKILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+ +S     PVI VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  TEVLRQIRSNS---STPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium]
          Length = 228

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D E  +++    +  + Y   +  +G  ALE   ++ PD++++D+ L +  
Sbjct: 1   MSMKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++I+E   +  +P+I +TA + + D     K G + Y+ KP S    +  I+  +
Sbjct: 61  GLTVCRKIRE---VSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0205]
          Length = 243

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D        +  +E  G++     +G +    A++  PDV+I D+ +  + G 
Sbjct: 17  ARLLLVDDEPGLRTAVQAYLEDEGFVVTTAVDGEDGWAKAQELLPDVVISDVMMPRLDGY 76

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ED  L   PVI +TA  M  D     + GC+ YI KP      +  +   +  
Sbjct: 77  GLLRKLREDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDELVARVHNVVKR 136


>gi|228937889|ref|ZP_04100517.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228977345|ref|ZP_04137740.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782322|gb|EEM30505.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228821795|gb|EEM67795.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938368|gb|AEA14264.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IV+D++   +L    +++  Y   +  +G+EAL+L +++  D++I+DI + ++ 
Sbjct: 1   MKKNILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE    I++D     +P+I +TA   + D  R    G + YISKP S    +  +K  +
Sbjct: 61  GLETLIHIRKDF---NMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M KK   +++V+D    +++    +   GY  +   NG+EA++LA++H P +II+D+ + 
Sbjct: 1   MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHSPHLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  + I+ +S+L +  +   TA      +      G + YI+KPI   + +  +K
Sbjct: 61  EMDGIEACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
 gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
          Length = 237

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL L  Q+  +++I+D  + +I
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++  ++  +  +   GY    + NG EAL+  R  + ++I+MDI + ++ 
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K+I++   L  IP+I +TA   + D+ +    GC+ YI+KP  L      +   +
Sbjct: 61  GFEAIKRIRK---LTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712]
          Length = 269

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED+    ++    +E +G       +G EAL  A +   D+I++D+ L  + GL
Sbjct: 11  ARILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRAAERWADLIVLDLMLPGLDGL 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++++       +PVI +TA   + D     + G + Y++KP S    +  ++  +
Sbjct: 71  EVCRRLRATGP---VPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVL 125


>gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IVED +    + +  +E  GY      +G +AL+   +  PD++++D+ L ++ 
Sbjct: 1   MEKKILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVMLPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+E      +P++ +TA   + D+    + G + YI+KP  +   +  +    
Sbjct: 61  GFQVCRKIRESF---SMPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|116749733|ref|YP_846420.1| response regulator receiver protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698797|gb|ABK17985.1| response regulator receiver protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++  +++   GY      +G +AL++      D+I++D+ + E+ G E+
Sbjct: 11  ILIVDDISKNIQVLGNILRRDGYSLSFATSGTQALDMVFADDYDLILLDVMMPEMDGFEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++I+E  + Q IP+I +TA   + D  +  + G   Y++KP +    +  +  ++
Sbjct: 71  CRKIRELPDGQAIPIIFLTAKTDEEDIVKGFQAGGTDYVTKPFNSEELLARVHAHL 126


>gi|153869319|ref|ZP_01998959.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
 gi|152074149|gb|EDN71035.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
          Length = 576

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D  ++      L+   GY  +   NG EAL+ A +  PD++++D+ +  + G E
Sbjct: 6   TILIVDDETVSRYTVEVLLSAEGYNLVFAENGEEALKKAAESIPDLMLLDVMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + ++++ +  L E+P++ VTA   +    R  + G + ++SKP   +     ++    
Sbjct: 66  VCQRLRTNPRLAELPIVMVTALDDRDSRLRGIEAGADDFMSKPFDRAELRARVRTITR 123


>gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +D     ++    +   GY  +  R+G EAL+L + ++PD++++D+ + ++ G  
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLFKDYEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++DS   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI]
 gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED E    L +  +E  G+    ++ G EA     +  PD+II+D  L  +S
Sbjct: 1   MNAKILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++     + IP++ +TA   + D  R    G + Y+ KP S+   +  +K  +
Sbjct: 61  GIELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAIL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 4/122 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
           K++++V+D  L  KL  D ++  GY+ ++  +G +A+ L   +   D+II+D+ L E  G
Sbjct: 4   KRILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVMLPEYDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I++ S+   +P+I +TA   + DE      G + YISKP S +I +  +   + 
Sbjct: 64  FTVCREIRKKSK---VPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 228

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +L +K  R  +E  G       +G EAL LA+  + D+I++D+ L +++
Sbjct: 1   MGNKILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVMLPKLT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +Q++E     ++P+I +TA     D+    + G + Y++KP ++      IK  I
Sbjct: 61  GFEVCQQVRE---FSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAII 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 228

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 3/125 (2%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K   ++++V+D    +++    +   GY     +NG E +  A++ +P +II+D+ + 
Sbjct: 1   MKKKDIRILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKKKQPHLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  + I+    L+E  +  +TA +    +      G + YI+KPI   +F+  +K
Sbjct: 61  EMDGIEACEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 242

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 81  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135


>gi|172038635|ref|YP_001805136.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700089|gb|ACB53070.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 377

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   GY   +  NG  AL    Q  PD+I++DI +  ++G E+
Sbjct: 8   ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIHQVAPDLILLDINMPSMNGYEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K+D + ++IP+I ++A     D+ +  + G   YI+KP      +  I+  +
Sbjct: 68  CQQLKDDPDTKDIPIIFISALDDVLDKVKAFELGGVDYITKPFQAEEVIARIENQL 123


>gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+    +L    +   GY  ++  NG +AL      KPD+ ++D+ + ++ G
Sbjct: 1   MPKILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +   ++E     ++P++ +TA      + +  + G + Y+ KP      +  +K  + 
Sbjct: 61  WALCSALRESF---DMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     ++    +   GY      +G+EALE+  +  PD+I++D+ +  + G  +
Sbjct: 15  ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I++      +P+I +TA +  GD     + G + Y+ KP S       ++  I  
Sbjct: 75  CRAIRK---TSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRR 129


>gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 238

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 56/119 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED     +L    +  +G+      +G  A        P+VI++D  L   SGL 
Sbjct: 13  RVLIVEDEPAIAELIAINLRHNGFQPFWAEDGESAQRELDAVLPEVILLDWMLPGQSGLS 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++ + DS  + IP++ +TA   + D+      G + YI+KP S    +  I+  +  
Sbjct: 73  LARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRR 131


>gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435]
 gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 241

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  ++   +   +  NG EA  LA ++    I++D+ L E+ 
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|190565563|ref|ZP_03018483.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|190563590|gb|EDV17555.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
          Length = 511

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V++V+D+     +    +E +GY      +G  AL       PD++++D+ L  + 
Sbjct: 1   MTQRVLVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEPPDLVVLDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++       IP+I +TA   + D     + G + Y+SKP S    +  +   +
Sbjct: 61  GLEVCRRLRAQPGG--IPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|123967682|ref|YP_001008540.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197792|gb|ABM69433.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 260

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+     L    +E SG+   +  +G++   LA Q+ PD+I++D+ L  + 
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D     IP++ +TA     D+      G + YI+KP  L      IK  +
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
 gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
          Length = 236

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK+++++     +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQNKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20]
 gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++E+  Y      +G +AL+   +  PD++++D+ L  + 
Sbjct: 1   MSTRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI + I+ +S   ++P+I +TA     D     + G + Y++KP      +  +   +
Sbjct: 61  GVEICRLIRSES---DVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 229

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D      +    +    +  +   +  EA        PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++ +++   +EIP+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 233

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++VED +   +  +  +   G+  L+  +G + +ELA  +KPDV ++DI L  I 
Sbjct: 5   MSIKVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIMLPGID 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++  ++   I +I +TA     D+    + G + Y++KP +    +  IK  +
Sbjct: 65  GFEVCKILR--NKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVL 122

Query: 121 GEA 123
             +
Sbjct: 123 RRS 125


>gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 256

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  I G
Sbjct: 23  MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 82

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 83  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 139

Query: 122 E 122
            
Sbjct: 140 R 140


>gi|163753369|ref|ZP_02160493.1| two-component response regulator [Kordia algicida OT-1]
 gi|161327101|gb|EDP98426.1| two-component response regulator [Kordia algicida OT-1]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M KK   +++V+D    +++    + + GY      NG+EA+  A++ KP +IIMD+ + 
Sbjct: 1   MKKKDIKILLVDDEPDILEIVGYNLSSEGYNLTTASNGVEAIAKAKKIKPHLIIMDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  + I++DS L    +  +TA      +      G + YI+KPI   + +  +K
Sbjct: 61  EMDGIEACENIRKDSSLANTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+MIV+D+    +L   L++  G+   + R+G EALE   +  P + ++D+ +  + G
Sbjct: 1   MSKIMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEANPSLAVIDLMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++    +++PV+ +TA   K  + +  + G + Y++KP      +  +K  + 
Sbjct: 61  YELCRQLRQ--GYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI +  + G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
 gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 248

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EALEL     PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED ++  ++ +D +   GY  L+  +G EAL +  +H+  +II+DI L E+ 
Sbjct: 1   MQRKILIVEDEDILREIVKDYLLNDGYEILEATDGKEALSIFEEHEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++      +P+I +TA   + D     + G + Y++KP S  I +   K+ I
Sbjct: 61  GWSVCRRIRK---TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLI 117


>gi|149195677|ref|ZP_01872734.1| response regulator receiver domain protein (CheY-like)
           [Lentisphaera araneosa HTCC2155]
 gi|149141139|gb|EDM29535.1| response regulator receiver domain protein (CheY-like)
           [Lentisphaera araneosa HTCC2155]
          Length = 229

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D     +L +  +   GY  + T +G +A+++   H PD+II+D  L  + 
Sbjct: 1   MAKRVLVVDDEPDIQELLKLTLGKEGYDVICTGDGSKAIKMTETHAPDLIILDGMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I  ++K D     IP+I ++A   + D+    + G + YI+KP S  +    +   I
Sbjct: 61  GNDICYRLKNDKSTANIPIIMLSARTDETDQIIGIRLGADDYITKPFSPKVLSAKVSATI 120

Query: 121 GEA 123
             A
Sbjct: 121 KRA 123


>gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae]
          Length = 230

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISG 61
           + ++IV+D     ++    +E +GY  L+  N  +A  +    KPD+I++D  L    SG
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCLEADNAQDAHAIIVDRKPDLILLDWMLPGGTSG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +++K +    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  + 
Sbjct: 64  IELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLKAVLR 123

Query: 122 EA 123
            A
Sbjct: 124 RA 125


>gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 226

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++ T GY     ++G  AL+  +   PD++++D+ L  + 
Sbjct: 1   MNPRILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI  +I+E+S    +P+I +TA +   D  +  + G + Y+ KP +    +  ++  +
Sbjct: 61  GIEICARIREESG---VPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRL 117

Query: 121 GEA 123
             A
Sbjct: 118 RPA 120


>gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P]
 gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P]
          Length = 232

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K   K+++V+D    +++    +   GY      NG EA++ A+++ P +I++DI + 
Sbjct: 1   MNKSEIKILLVDDEPDIIEIVGYNLRNEGYQIFTATNGQEAIKSAKKNIPHLILLDIMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  ++I++ S L+ + +  +TA      +    + G + YI+KPI   + +  +K
Sbjct: 61  EMDGIEACEKIRKISSLENVLIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 SLLRR 125


>gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G  AL    +   D++++D+ L E+SG
Sbjct: 1   MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGADIVLLDLMLPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++ S    +P+I VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRQRS---HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 234

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  I G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21]
 gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V+I+ED +   +L    +E  G+ A+   +G + LE A +  PD+I++D+ L  + G
Sbjct: 1   MQTVLIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVRTLPDLILLDLMLPGMLG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K I++      IPVI +TA   + D+    + G + Y+ KP S    M  +K  + 
Sbjct: 61  TEVCKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016]
 gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 227

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++V+D E    L    ++  G   L   NG EAL   +++  D++++DI +  + 
Sbjct: 1   MNKTVLMVDDEERMRLLIEAYLKREGLKVLLAENGEEALRKFKENHVDLVVLDIMMPLMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++++   +  +P+I +TA     D+    + G ++Y++KP+S  I +  IK  +
Sbjct: 61  GWTVCRELRK---ISNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D  L +K  +  +E  GY  L   +G EALE A+    D+I++D+ L +I 
Sbjct: 1   MGYKILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANADLILLDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ +QI+ +S+    P+I +TA      +    + G + Y++KP ++      IK  +
Sbjct: 61  GLQVCQQIRLNSQT---PIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|91772718|ref|YP_565410.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
 gi|91711733|gb|ABE51660.1| PhoP response regulator receiver [Methanococcoides burtonii DSM
           6242]
          Length = 170

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D    +   +  +E  GY  ++  NG  A +  +   PDVI++D+ + ++ G E
Sbjct: 49  KVLIVDDEPDAVIATKRALEADGYNVIEANNGTMAFDALKSDIPDVILLDVMMPDMDGFE 108

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++KE+   + IPVI +TA     D+      G + Y++KP +L      IK  +  
Sbjct: 109 VCRRLKEEPLYENIPVIMLTAKGEINDKVEGLDIGADDYMTKPFNLKELKARIKTVLRR 167


>gi|56479139|ref|YP_160728.1| CheY-like domain-containing protein [Aromatoleum aromaticum EbN1]
 gi|56315182|emb|CAI09827.1| CheY-like response regulator domain [Aromatoleum aromaticum EbN1]
          Length = 131

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 81/123 (65%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I ED+  +++L R L+  +GY  L   +G  ALELAR+H PD+II D+Q+ + +
Sbjct: 1   MAARILIAEDHPASLELLRYLLSANGYDILSAEDGEAALELARRHPPDLIICDLQMPKKN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +  L  IPV+AVTAF+M GD E++   G + Y+SKPI    F+  I++Y+
Sbjct: 61  GYEVVRELKREPALAAIPVVAVTAFSMIGDREQVLAAGFDGYLSKPIEPEEFVALIEQYL 120

Query: 121 GEA 123
             +
Sbjct: 121 PPS 123


>gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D+    +L + L+   G+   +  +G+EAL      K D++I+D+ +  + G
Sbjct: 1   MNKILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETIKVDMVILDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++E     ++P++ +TA      + +  + G + Y+ KP      +  +K  + 
Sbjct: 61  WQLCRELREH---YDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     ++    +   GY      +G+EALE+  +  PD+I++D+ +  + G  +
Sbjct: 15  ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I++      +P+I +TA +  GD     + G + Y+ KP S       ++  I  
Sbjct: 75  CRAIRK---TSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRR 129


>gi|86750927|ref|YP_487423.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573955|gb|ABD08512.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1426

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN         L+  S Y      +G+ ALE A +H+PD++I DI +  + GL 
Sbjct: 648 RILLADDNPDMRDYVTRLLGES-YEVETVGDGVAALEAAWKHRPDLVISDIMMPRLDGLS 706

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + K ++ DS L ++PVI ++A A +       + G + Y+SKP S    +  ++  +
Sbjct: 707 LLKALRSDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNL 763



 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 15/127 (11%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEISG 61
            V++VEDN    +    L+   GY  +   +  +AL+L  Q    +  +++ D+ +  + G
Sbjct: 1305 VLVVEDNAEVGEFSTQLLHDLGYETVLATSAEQALQLLDQDDAARFHLVLSDVVMPGMDG 1364

Query: 62   LEITKQIKEDSELQEIPVIAVT--AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            + + ++I+    L  +PV+  +  A  +  D     +      + KP S+    + +++ 
Sbjct: 1365 VALGREIRR--RLPHLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRA 1417

Query: 120  I---GEA 123
            +     A
Sbjct: 1418 LMDSRRA 1424


>gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 224

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED+     +  D ++   Y      +G +  +L      D+I++D+ L ++ G+ 
Sbjct: 2   RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++      IPV+ +TA     D+      G + Y+ KP  L      I+  +  
Sbjct: 62  LCQRLRKSG--YAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRR 118


>gi|153872512|ref|ZP_02001384.1| adenylate cyclase [Beggiatoa sp. PS]
 gi|152071021|gb|EDN68615.1| adenylate cyclase [Beggiatoa sp. PS]
          Length = 681

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 2   LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           + K   +++VED+ LN +L   L+  + +     +NG  ALE+ ++  P +I++DI L  
Sbjct: 547 MPKSPSILLVEDSALNARLLSFLLTKNAFNVFVAKNGNSALEMVKKQHPHLILLDINLPG 606

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I+G EI K++K ++  Q+IPVI ++A+    D+ +  + G   YI+KP      +  I+ 
Sbjct: 607 INGFEICKRLKSNTHTQDIPVIFMSAYTDTLDKVKGFELGAVDYITKPFQQEEVLARIRT 666

Query: 119 YI 120
           ++
Sbjct: 667 HL 668



 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISGLE 63
           MIV+D  +N ++  + +    Y  +Q  +G EAL L  +   KPD+I++DI +   +G +
Sbjct: 1   MIVDDEPVNRQVLVNHLSLQNYKTIQATDGQEALNLVLEGEIKPDLILLDIMMPYKTGYD 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +T++I++     E+P+I +TA     D     + G   Y++KP+S    +  IK ++
Sbjct: 61  VTQKIRKKWPADELPIILLTAKNQVSDLVVGLEMGANDYLTKPVSKDELLARIKTHL 117


>gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI +  + G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 81  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 135


>gi|254411506|ref|ZP_05025283.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182007|gb|EDX76994.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 419

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 65/120 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D+     + ++L+E+ G+  L   +G  AL+  ++ +PD+II D  + ++ G
Sbjct: 1   MAKILAVDDDITVQIILQELLESEGHDVLLADDGEAALQKTQEFQPDLIICDWMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++IK D +L  I +I +T      D  +    G + ++SKPI  S     ++  + 
Sbjct: 61  LELCRRIKADPQLATIFLILITIREQVADRVQGLDSGADDFLSKPIEPSELQARVRSGLR 120


>gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D      L    ++ +GY      +G    E+ +  +PD+I++D+ L ++ 
Sbjct: 1   MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +++++ S    +P++ +TA     D+      G + Y++KP S    +  I+   
Sbjct: 61  GIQVCRELRKQSNA--VPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIF 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED +    +  + ++  GY  +   +G+EAL + + +  D++I+DI +  + G
Sbjct: 1   MAKILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNNIDLMILDIMMPYLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +  +E +    IP+I +TA   + D+ +  + G + YI+KP S  + +  +   + 
Sbjct: 61  FSVCRVSREMT---NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|90424799|ref|YP_533169.1| response regulator PleD [Rhodopseudomonas palustris BisB18]
 gi|90106813|gb|ABD88850.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisB18]
          Length = 457

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N KL    +    +  L   NG +ALE+  +   D++++D+ + ++ 
Sbjct: 1   MSARILVVDDIPANAKLLEARLSAEYFDVLTASNGAQALEICSRAACDIVLLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPV+ VTA     D  R  + G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    ++    +      N  EAL  A     D++I+ + L+E  GL 
Sbjct: 157 RILLVDDRPSSYERLAPVLAAE-HAVDVEPNPSEALFHAADGNYDLLIVSLGLEEFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++A+ A A       R  + G   Y+ +P+  +  + 
Sbjct: 216 LCSQARSLERTRHVPILAI-ADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|328954298|ref|YP_004371632.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454622|gb|AEB10451.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 228

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D E  ++L R  +   GY       G EAL  A    P++I++D+ L  +
Sbjct: 1   MAKEHILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTAHSIHPELILLDLMLPGV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            GLE+ +++K+D +   +P+I ++A   + D     + G   Y++KP S  + +
Sbjct: 61  DGLEVCRKLKQDPKTSHVPIIMLSAKGEEADIVTGLELGAADYVTKPFSPRVLI 114


>gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++ ED           ++ +G+   +  NG EA+    +   DV+++D+ + E+ G
Sbjct: 1   MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E    I++  E   + +I +TA  ++ D+      G + YI+KP S    +  I+  + 
Sbjct: 61  FEACAAIRDLDE--NVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
 gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
          Length = 234

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G EAL+   Q+ P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++       +P+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 65  QVCREVRAK---ANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121


>gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  + V+IV+D E    L    +E +G+  L+  +G EAL L  QH  D +++D+ + + 
Sbjct: 1   MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  +  +I+E S   ++P++ +TA   + D+ +  K G + YI KP S    +  ++  
Sbjct: 61  DGFAVCARIREQS---DVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 1382

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN    +  + L+    Y      +GM ALE  R+H PD+++ D+ + +++G 
Sbjct: 629 ARIILADDNADMREYVKRLLNKL-YQVEAVGDGMAALEAIRRHPPDLVLTDVMMPQLNGF 687

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +Q++ +   QE+P+I ++A A +       + G + Y+ KP S    +  I+  +
Sbjct: 688 ELLQQLRSNPLTQELPIILLSARAGEEYLVEALEAGADDYLVKPFSARELLVRIEANL 745


>gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED        ++ +E  GY  +   +G   L++AR+ +PD++++D+ L  + 
Sbjct: 1   MSAKILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARREQPDLVLLDLMLPMVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + ++ +S    +P+I +TA   + D     + G + YI+KP S    +  IK  +
Sbjct: 61  GFTVCRTLRAES---SVPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
 gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
          Length = 237

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M +  ++++ED      +    ++ SGY A    +G   LEL    +PD++++D+ L  +
Sbjct: 1   MSRAHILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTGRPDLVLLDLMLPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ +++++  E ++ PVI VTA   + +       G + YI KP SL+  M  ++  
Sbjct: 61  EGWEVCRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQ 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|217976613|ref|YP_002360760.1| response regulator receiver modulated diguanylate cyclase
           [Methylocella silvestris BL2]
 gi|217501989|gb|ACK49398.1| response regulator receiver modulated diguanylate cyclase
           [Methylocella silvestris BL2]
          Length = 469

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+DN  N+KL    +    Y  +   NG +AL +  + + D++++D+ +  ++
Sbjct: 1   MTARVLVVDDNLPNVKLLEARLSAEYYEVVTASNGADALAICARGECDIVLLDVMMPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D+    IPV+ VTA     D     + G + +++KPI     +  ++   
Sbjct: 61  GFEVCRRLKADTLTAHIPVVMVTALDQTSDRLMGLEAGADDFLTKPIDDVALIARVRSLA 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 95.2 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D   +++     ++   +      + +EAL        D++I+ + L+   GL 
Sbjct: 157 RVLVVDDRRSSVETIYGALKGL-HEVELEPDALEALVEGAAGGYDLLIVSLSLEAYDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEE---RIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  QI+     +E+P++A+   A   D     R    G   Y+ +PI     +  ++  +
Sbjct: 216 LCSQIRSIEATRELPILAI---AEPEDRARTLRCLDLGVNDYLLRPIERHELVARVRTQL 272

Query: 121 GE 122
             
Sbjct: 273 RR 274


>gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
 gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
          Length = 227

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D E  +   +D ++   Y      +G+EA+E A+ + PD+I++D+ +   +
Sbjct: 1   MKEKILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVEKAKLN-PDLILLDVMMPGKN 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+   ++   P+I +TA + + D       G + YISKP SL      I  ++
Sbjct: 60  GYEVCREIR---DIVNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630]
 gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile]
          Length = 223

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED +    +  + ++  GY  +   +G+EAL + + +  D++I+DI +  + G
Sbjct: 1   MAKILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +  +E +    IP+I +TA   + D+ +  + G + YI+KP S  + +  +   + 
Sbjct: 61  FSVCRVSREMT---NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193]
 gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193]
          Length = 224

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L R  +E +G+  +   +G EAL  A +  PD I++DI L E+ G E
Sbjct: 2   KILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGLPELDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++ SE   +P++ +TA   + D     + G + Y++KP S    +  I+  +  +
Sbjct: 62  VCRRIRQRSE---VPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRS 118


>gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 234

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  I G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGGIDLVLLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
 gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
          Length = 239

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++M+++D    ++L    +E  GY  +   +  +ALE  +  + D+ ++DI L  + G 
Sbjct: 4   RRIMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIMLPGMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + I+   + +  PVI ++A   + D+    + G + YI+KP S+   +  IK     
Sbjct: 64  EFVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123


>gi|126695485|ref|YP_001090371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542528|gb|ABO16770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 260

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+     L    +E SG+   +  +G++   LA Q+ PD+I++D+ L  + 
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D     IP++ +TA     D+      G + YI+KP  L      IK  +
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1135

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQE 58
           +K  K++IV+D  +N+++  + +    Y   Q  NG++A    RQ ++PD+I++DI + +
Sbjct: 726 MKAFKILIVDDEPVNLQVLVNHLSLHNYKITQAVNGLDAFTKIRQGYRPDLILLDIMMPK 785

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G E  K+I+      E+PV+ +TA     D       G   Y++KPIS +  +  IK 
Sbjct: 786 MTGYEFCKKIRNKYLPNELPVVLLTAKNQISDLVAGFAAGANDYLTKPISKNELLARIKT 845

Query: 119 YI 120
           ++
Sbjct: 846 HL 847


>gi|300867146|ref|ZP_07111811.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillatoria sp. PCC 6506]
 gi|300334847|emb|CBN56977.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillatoria sp. PCC 6506]
          Length = 461

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ +  + +  +GY      +G  AL+   +  PD+I++D+ +  I G E 
Sbjct: 45  ILIVDDTPTNLDVISEALSNAGYKVAFATSGERALQQVERRPPDLILLDVMMPGIDGFET 104

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++K + +  +IPV+ +TA A   ++ +  K G   Y++KP      +  +K ++
Sbjct: 105 CKRLKANEKTCDIPVMFMTALADVDNKVKGLKLGAVDYVTKPFQEQEVLARVKTHL 160


>gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 238

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E   +L R  +E   Y   +  +G  AL++A +     I++DI +    G+E
Sbjct: 6   KILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMALEKDYSCILLDIMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++ E    +  PVI +TA   + +     + G + YI KP S    +  +K  +  +
Sbjct: 66  VCQELHEK---KMTPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRRS 122


>gi|255616226|ref|XP_002539738.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223502939|gb|EEF22645.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 185

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +L    I+ +G+ A++  +   A  L R+  PD+I++D  L  +SG+E 
Sbjct: 6   ILVVEDEPAIQELLALNIKQAGHHAIRATSVEHAQMLLRETMPDLILLDWMLPGMSGIEF 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++K DS  +E+P+I +TA   + D+ R  + G + Y++KP S       IK  +  
Sbjct: 66  ARRLKSDSLTKEVPIIMLTARGDEFDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 123


>gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 248

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +D     ++    +   GY  +   +G EAL+L + + PD++++D+ + ++ G  
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYDPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++DS   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|311694984|gb|ADP97857.1| signal transduction histidine kinase [marine bacterium HP15]
          Length = 775

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 68/116 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDN++N  +   L++  G+      NG++A++    +  D+++MD Q+  + G E
Sbjct: 656 KILLVEDNQVNQMVAVSLLKKLGHRTDHAENGLKAIQALENNHYDLVLMDCQMPVMDGYE 715

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I+++ E +E+P+IAVTA  M+GD E     G   YI+KP         I ++
Sbjct: 716 ATQRIRQNPEWKELPIIAVTANVMQGDREDCLASGMNDYITKPYKREELRTVIDRW 771


>gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 235

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +  +GY  +  R+G EA+          +++DI +  + G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 81  CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135


>gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
 gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
          Length = 227

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M +  V+++ED     ++    +   GY      NG + L +  +  PDVI++D  L  +
Sbjct: 1   MTQPHVLVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGLLVVAEDAPDVIVLDWMLPHV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+EI +Q+K  ++ + IP+I ++A + + D+ R  + G + Y+ KP +++  M  ++  
Sbjct: 61  SGIEICRQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQ 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|124024335|ref|YP_001018642.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964621|gb|ABM79377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 268

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 62/118 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++   +L    +E +G+   +  +G++   LA Q+ PD+I++D+ L  + GL +
Sbjct: 5   ILLIEDDQDMRELVSSHLEHNGFDVQKAEDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D     IP++ +TA     D+      G + Y++KP  L      +K  +  
Sbjct: 65  CQRLRRDERTAGIPILMITALGGTKDKVTGFNSGADDYLTKPFDLEELQVRVKALLRR 122


>gi|75907784|ref|YP_322080.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75701509|gb|ABA21185.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 369

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D + N+ L + ++E+ GY      +G+ AL+   Q  PD+I++D+ +  + G E
Sbjct: 11  RILAVDDTKDNLILVQTILESEGYEIDLASDGISALQKVEQSPPDLILLDVMMPGMDGYE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+ +  L  +P++ +TAF  +         G + +I KP      +  ++  + 
Sbjct: 71  VTRRIRNNPALSYVPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLR 127


>gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 249

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++ ED+          +   GY      +G+EAL  A +  PDV+++D+ +  I 
Sbjct: 1   MTQTVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTPPDVLLLDVMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + ++ + +    P++ +TA     D       G + Y+ KP  +      ++  +
Sbjct: 61  GLQVCRVLRAEGD--RTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1821

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/118 (44%), Positives = 78/118 (66%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDNE N+    D + + G+  +  RNG+EA++ A+QH PDVI+MDIQ+ E+ GLE 
Sbjct: 1704 ILLAEDNEANIITLTDYLHSKGFRVVLARNGIEAVQQAKQHTPDVILMDIQMPEMDGLES 1763

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T+QI+ DS L  +P+IAVTA AM GD E+    G   Y++KPI L   +  I++Y+  
Sbjct: 1764 TRQIRADSGLPRMPIIAVTALAMPGDREKCLAAGATEYMAKPIRLKKLVTLIEQYLHR 1821



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K ++VED++ +       +   G   L    G   ++  +Q  PDVII+DI L  ISG E
Sbjct: 1573 KALVVEDSDASANHIARYLGELGITVLIHPQGEGTIDTVQQFNPDVIILDILLPHISGWE 1632

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +  Q+KE+S  Q IPV+     ++  D  +  + G   Y+ KP+S       + + 
Sbjct: 1633 VLVQLKENSATQSIPVVV---VSVVDDPTQALELGAADYLLKPVSRPQLQSVLSQL 1685


>gi|300865288|ref|ZP_07110102.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300336761|emb|CBN55252.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 403

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN+ N+ +  D +    +  L   +G  A+E     +PD+I++D+ +  I G E 
Sbjct: 11  ILIVDDNQTNLDVLFDFLRNCNFKVLVALDGESAIEQLEYVRPDLILLDVMMPGIDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K     ++IPVI +TA +   ++ R  + G   YI+KP      +  I+ ++
Sbjct: 71  CSRLKAIPATKDIPVIFMTALSDTVNKVRGFQSGAVDYITKPFQHEEVLSRIQTHL 126


>gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 225

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
 gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V+IVED     +L    +  +G+  + + +G  A        PD+I++D  L   
Sbjct: 1   MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLPGQ 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGL++ +Q ++D   + IP++ +TA   + D+      G + YI+KP S    +  I+  
Sbjct: 61  SGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family
           [Variovorax paradoxus EPS]
 gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus EPS]
          Length = 230

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V+IVED     +L    +  +G+  + + +G  A        PD+I++D  L   
Sbjct: 1   MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLPGQ 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGL++ +Q ++D   + IP++ +TA   + D+      G + YI+KP S    +  I+  
Sbjct: 61  SGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
 gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
          Length = 229

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++VED +   +  +  +   G+  L+  +G + +ELA  +KPDV ++DI L  I 
Sbjct: 1   MSIKVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++  ++   I +I +TA     D+    + G + Y++KP +    +  IK  +
Sbjct: 61  GFEVCKILR--NKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 242

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+E   ++   ++   G+      +G +ALE+ R  KPD++++D+ L  I 
Sbjct: 19  MKARILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGKPDLVLLDLMLPGID 78

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S   ++PV+ +TA A   D  R  + G + Y+ KP   +  +  ++  +
Sbjct: 79  GIEVCRLIRAES---DVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARL 135

Query: 121 G 121
            
Sbjct: 136 R 136


>gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 233

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++V+D      L +  +E +G+      +G   LELA +    +I++D+ L E+ 
Sbjct: 1   MADKVIVVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAVLIVLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K++++       P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCKRLRQQKV--NTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|124006367|ref|ZP_01691201.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla
           marina ATCC 23134]
 gi|123988024|gb|EAY27695.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla
           marina ATCC 23134]
          Length = 490

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 63/117 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D   N+KL  + +   GY  L   +G  A+E     KPD+I++D+ +  I G E
Sbjct: 11  KILVVDDTPANIKLMVEHLSQEGYKTLVAEDGESAIEQVAFVKPDLILLDVMMPGIDGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++KED   ++IP+I +TA +   ++ +    G   Y++KPI     +  +  ++
Sbjct: 71  TCHRLKEDDSTKDIPIIFMTALSDTENKVKAFSMGAVDYVTKPIQHKEVLSRVSAHL 127


>gi|77460594|ref|YP_350101.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384597|gb|ABA76110.1| putative two-component response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 243

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L    +  +G+    T +G    +   +   D++I+D+ L +  G 
Sbjct: 6   KSILLVDDDQEIRELLETYLTRAGFQVRATADGAGFRQALNEAPSDLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++     ++P+I +TA + + D     + G + Y+ KP S       IK  +  
Sbjct: 66  SLCRWVRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G EAL+   Q+ P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++       +P+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 65  QVCREVRAK---ANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121


>gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 228

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++VED      L R  +E  GY       G EAL      +P ++++D++L  + 
Sbjct: 1   MPRPILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +Q+++     ++PV+ +TA     +  R  + G + Y+ KP +    +  I+  +
Sbjct: 61  GVEVCRQVRQ--RWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 260

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+     L    +E SG+   +  +G++   LA Q+ PD+I++D+ L  + 
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D     IP++ +TA     D+      G + YI+KP  L      IK  +
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 231

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+   +++   L+ + GY  L   +G+EALE   + +PD++++DI +  +S
Sbjct: 1   MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I+E S   ++PVI +TA +   D+    + G + YI+KP      +  IK  +
Sbjct: 61  GFEVLKKIRERS---DVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL 117


>gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 224

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED        R  +   GY      +G +AL++AR+  PD++++D+ L  I G
Sbjct: 1   MSTILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++      ++P+I +TA     D     + G + Y+ KP +    +  I+  + 
Sbjct: 61  LEVARRLRA---ASDVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08]
          Length = 229

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     +     +++ GY      NG EAL+L  +  PD+I++D+ L ++S
Sbjct: 1   MKKYVLLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIEEKTPDLILLDLMLPDMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI + ++   + +  P++ VTA   + D     + G + YI KP S+  FM  +   +
Sbjct: 61  GLEICRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAML 120

Query: 121 GEA 123
             +
Sbjct: 121 KRS 123


>gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
 gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++  ++  +  +   GY    + NG EAL   +  K D+I+MDI + +I 
Sbjct: 1   MNYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEKFDLILMDIMMPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K I++       P+I +TA   + D+ +    GC+ YI+KP  L      +   +
Sbjct: 61  GFEAIKVIRK---FTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08]
 gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07]
 gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile]
 gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08]
 gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07]
          Length = 222

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+    +L  + +   GY      +G+E ++  +Q   D++I+DI +  + 
Sbjct: 1   MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I++ S    +P+I +TA   +GD+ +     C+ YI+KP S ++ ++ ++  +
Sbjct: 61  GYGVCKMIRKSS---SVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|327395749|dbj|BAK13171.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355]
          Length = 249

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL L   +  D++++D+ + + +G
Sbjct: 18  MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKNG 76

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++  +    PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 77  IDTLKELRQQYQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 133

Query: 122 EA 123
            +
Sbjct: 134 RS 135


>gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 234

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G EAL+   Q+ P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYSPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++       +P+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 65  QVCREVRAK---ANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121


>gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
 gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
          Length = 234

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D +L +K  R  +E          +G EA+ LA+Q + DV+++D+ L +  G
Sbjct: 1   MARILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKFDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E     E+P+I +TA     D+    + G + YI+KP ++      IK  + 
Sbjct: 61  YEVCQAIRE---FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14]
 gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14]
          Length = 236

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  +KL    +   G+      NG +AL LA     D I++DI L ++ 
Sbjct: 1   MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++      + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|148654863|ref|YP_001275068.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus sp. RS-1]
 gi|148566973|gb|ABQ89118.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus sp. RS-1]
          Length = 331

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I +DN+   +     +E  GY AL  RNG EAL LA + +PD++++D+ + +I 
Sbjct: 1   MAAKILIADDNQAMREAIIRFVEAEGYTALAARNGREALALALEKQPDLVLLDVTMPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D     IP+  +T            + G + +++KP    +    I+  +
Sbjct: 61  GFEVCRRLKNDPRTALIPITMLTVLDSPDHRRYGIEAGADDFLTKPFDERLLRARIQSQL 120

Query: 121 G 121
            
Sbjct: 121 R 121


>gi|78183896|ref|YP_376330.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168190|gb|ABB25287.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 259

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++    L    +E SG+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L      IK  +  +
Sbjct: 65  CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123


>gi|17232371|ref|NP_488919.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134016|dbj|BAB76578.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 407

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+K+  D++  +G+     +NG+ AL   ++  P++I++D+ +  + G E 
Sbjct: 9   VLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMDGFET 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K + + ++IPVI +TA +   ++ +  + G   YI+KPI     +  I  ++
Sbjct: 69  CRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHL 124


>gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 229

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+DN+   ++   L+E  GY   +  +G  A+  A+    D+II+D+ + ++ 
Sbjct: 1   MGSKILIVDDNQEIREVVSVLLENEGYEVQEAEDGEIAIAKAKDM--DLIILDVMMPKMD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  +QI+E   +   P++ +TA  M  D+      G + Y++KP S +  +  +K  +
Sbjct: 59  GFKACRQIRE---VSNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALL 115

Query: 121 GE 122
             
Sbjct: 116 RR 117


>gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +   +  R  ++ +GY  +   +G++A+E+     P+++I+D+ +  + GLE
Sbjct: 2   KILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPNMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ +   +  P++ +TA     D       G + Y+ KP +L   +  ++  +  A
Sbjct: 62  VCRTLRSEGWDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119


>gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 241

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  +G EA +LA  +    I++D+ L E+ 
Sbjct: 1   MANEILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|218437504|ref|YP_002375833.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218170232|gb|ACK68965.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 373

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+  N+ L + ++E  G   +  ++G+ AL+L ++  P +I++D+ + ++ G E
Sbjct: 14  KILVVDDSPDNLFLIQTILEEQGLNVILAQDGIAALKLVKEKSPKLILLDVMMPKMDGFE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T+QI+ +  +  IP++ +TA+       +    G + +I KP+ +   +  ++  + 
Sbjct: 74  VTRQIRSNPNIPYIPILLITAYDQPS-AVKGLDVGADDFIRKPVDVDELLARVRSLLR 130


>gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 229

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 60/117 (51%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED+    +L    +E  GY      +G  ALE  RQ +PD++++D  L  ISGLE+ 
Sbjct: 7   LVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQVRQKRPDLLLLDWMLPGISGLEVC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +Q++   +   +P++ ++A   + D  R    G + Y+ KP S+      +K  +  
Sbjct: 67  RQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123


>gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 227

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+ +V+D++   ++    +E  G+   Q  +G  AL+  + + P ++I+DI L  I G+ 
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNPPRLVILDIMLPGIDGIA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++     ++P+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 66  LCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121


>gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
 gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
          Length = 237

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     NG EAL+L  ++  +++I+DI + ++
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNYNLVILDIMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +  +GY  +  R+G EA+          +++DI +  + G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 81  CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135


>gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 263

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+     L    +E SG+   +  +G++   LA Q+ PD+I++D+ L  + 
Sbjct: 4   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D     IP++ +TA     D+      G + YI+KP  L      IK  +
Sbjct: 64  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 123

Query: 121 GE 122
             
Sbjct: 124 RR 125


>gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 239

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  +G+      +G EAL+LA   +PD++++D+ L ++ G 
Sbjct: 10  ARLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVMLPDVDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++E    + +PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 70  TVTRKLRE--RGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127


>gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+E   K+ +  +E  G++     +G+ A E   ++K D++++D+ L  + G 
Sbjct: 4   KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+E       P+I +TA     ++ +    G + Y++KP  +   +  I   +  
Sbjct: 64  QVCQKIRE---TSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120


>gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055]
 gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger
           B]
 gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Vollum]
 gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Australia 94]
 gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 250

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++D+ +    G+E
Sbjct: 18  RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 78  VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRS 134


>gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 254

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D      +    +E  GY      +G  AL    + +PD++++D+ +  + GL  
Sbjct: 16  VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++       +PV+ +TA  + GD       G + Y++KP  L   +  ++  +  
Sbjct: 76  CRRLRTADPT--LPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRR 131


>gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 233

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D +  + L    +   GY   +  NG+EA++  +Q + D+ I+DI L +I 
Sbjct: 1   MNKKILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAMKCIKQSQIDLAILDIMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+E       P+I +TA     D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFRLCQKIREKFYF---PIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +  + + +  +E  G+  +   +G  AL++       +I++D+ L +++G E
Sbjct: 6   KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +I+    +  +P+I +TA A + ++      G + Y++KP S+   +  ++  +  A
Sbjct: 66  VCNRIRA---VSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRA 122


>gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 230

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ ED           ++ +GY  ++  NG EAL+   Q   D++++DI + E+ G
Sbjct: 1   MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +Q +   E+  + +I +TA   + D+      G + YI+KP S +  +  I+  + 
Sbjct: 61  FAVCEQARSKDEV--VGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|312795607|ref|YP_004028529.1| phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
 gi|312167382|emb|CBW74385.1| Phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
          Length = 256

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 24  MPSSILVIEDEPAISELIAVNLQHAGHCPIRAYNAEQAQRLISDVLPDLVLLDWMLPGKS 83

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   ++++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 84  GVAFARELRSNERTKHIPIIMLTARGEEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 143

Query: 121 GE 122
             
Sbjct: 144 RR 145


>gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 226

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
           K+++V+D     KL RD +   G+  ++  +G EA++   +     +II+D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVRDFLTKKGFTVIEAGDGEEAVDKFFEVKDIALIILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I++     ++P+I +TA + + DE +    G + YI+KP S  I +  ++  +  
Sbjct: 65  QVCREIRQ---YSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|228957071|ref|ZP_04118843.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802604|gb|EEM49449.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 225

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
 gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
          Length = 1111

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 709 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 768

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y+SKP +       I+ ++
Sbjct: 769 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 822


>gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +     ++  GY      +G+  L  AR+  PD++I+D  L  IS
Sbjct: 1   MTHHILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI ++++      ++P+I +TA     D       G + Y+ KP S+   +  ++ ++
Sbjct: 61  GPEICRRLRTTGN--QVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K ++V+D +L +K  +  +E  GY      +G EAL++A++ + D++++D+ L E+ G
Sbjct: 1   MNKALVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + I+E     E+P+I +TA     D+    + G + YI+KP ++      IK  I 
Sbjct: 61  MEVCQAIRE---FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|90408203|ref|ZP_01216371.1| elongation factor P [Psychromonas sp. CNPT3]
 gi|90310733|gb|EAS38850.1| elongation factor P [Psychromonas sp. CNPT3]
          Length = 241

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+V++V+D++   +L  + +  + +  +   +G+E      Q +PD+II+D+ L    G
Sbjct: 4   TKQVLVVDDDKDIRELLAEYLTKNNFSVITAGDGIEMDAHLAQTEPDLIILDVMLPGDDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I++      +P+I +TA + + D     + G + YI+KP S    +  IK  + 
Sbjct: 64  FILCQRIRQ---TSMVPIIMLTANSDELDRILGLEIGADDYIAKPFSPRELLARIKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|83645119|ref|YP_433554.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83633162|gb|ABC29129.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 797

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V++VEDN++N  + + ++   GY      NG +AL+L      D+I+MD  +  + G 
Sbjct: 667 KHVLLVEDNQVNQLVAKTILRKLGYEVSIANNGQDALDLVGNDHYDIILMDCHMPVMDGY 726

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+ I+++S+   +P+IAVTA  M+GD+ER    G   Y++KP       + + K++
Sbjct: 727 EATRLIRQNSKYDALPIIAVTANVMQGDKERCLSCGMNDYLTKPYEKKALTQMLAKWL 784


>gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1343

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN    +   + +  S Y  L   NG EAL + ++ + D+I+ D+ +  + GL++
Sbjct: 1099 ILIVEDNTDIRQYLCEELGNS-YHILTAENGEEALSIVKEQEIDLILTDVMMPVMDGLQL 1157

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             KQIK++     IP+I ++A     ++    + G + YI KP S+++ +  I+    
Sbjct: 1158 CKQIKQNLRTCHIPIIILSAKTDLKEQLEGLQVGADDYIPKPFSMAVIVAKIRNLFR 1214


>gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
 gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
          Length = 234

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  I G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|206890474|ref|YP_002248031.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742412|gb|ACI21469.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 500

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 65/117 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+D   N+KL + ++   GY  L  +NG  ALE+ +    D++++D+ +  + G E+
Sbjct: 8   ILCVDDEPQNLKLLQAILSPRGYEVLVAQNGFLALEILKNQNVDIVLLDVMMPGMDGYEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++IKED  L+ IPVI +TA   K D  R  + G E ++SKP  +   +  I   + 
Sbjct: 68  CRKIKEDETLRHIPVIMITALTAKEDRIRGIEAGTEEFLSKPFDVGEVLARINMLLR 124


>gi|75907014|ref|YP_321310.1| response regulator receiver domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75700739|gb|ABA20415.1| Response regulator receiver domain protein (CheY) [Anabaena
           variabilis ATCC 29413]
          Length = 125

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D     +     ++  GY      +G  A++   +  PDVI++D+ L E+SG
Sbjct: 1   MPHVLLVDDEVALCESLAYTLQKEGYTVTTVADGQSAIKQFHKQVPDVILLDLMLPEVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+  +I+      ++P++ +TA     D+    + G + Y++KP +    +  IK  + 
Sbjct: 61  MEVCWRIRA---FSDVPIVMLTAKDQDIDKIWGLEAGADDYVTKPFNTRELLARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|238789578|ref|ZP_04633362.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
 gi|238722331|gb|EEQ13987.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
          Length = 232

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL L   +  D++++DI +   +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLL-DNSIDLLLLDIMMPRKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K++++     + PVI +TA   + D     + G + Y++KP +    +  I+  + 
Sbjct: 60  IETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 233

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +ALE    +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALEKI-DNTIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IETLKELRQR---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAMLR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL N1-067]
          Length = 236

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK+++++    ++P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQNKV--DVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|255099609|ref|ZP_05328586.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 224

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D E  + L +D  E +GY     ++G +AL+   ++ PD+I++DI + EI 
Sbjct: 1   MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+   +    P++ +TA     D+    + G + YI KP  L      +  ++
Sbjct: 60  GIEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 233

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED E   +  +  +   GYI     NG +AL        D+II+DI L    GL+
Sbjct: 2   RILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIMLPVKDGLK 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E+      P++ +TA     D+      G + Y+ KP S S  +  I+  +  
Sbjct: 62  VCREVRENGI--STPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRR 118


>gi|254412249|ref|ZP_05026024.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181215|gb|EDX76204.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 414

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     + ++L+ +  +      NG EAL   +   PD+II D  +  + G
Sbjct: 1   MAKILVVDDDLTVQLVLKNLLTSQNHDVAIANNGEEALRQVKLFHPDLIICDWIMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q+K D EL    +I +T      D  +    G + +ISKPI +   +  ++  + 
Sbjct: 61  LEVCRQVKADPELATTFIILLTMRDQITDRVQGLDAGADEFISKPIDMEELLARVRAGLR 120


>gi|16329618|ref|NP_440346.1| CheY family protein [Synechocystis sp. PCC 6803]
 gi|1652101|dbj|BAA17026.1| CheY subfamily [Synechocystis sp. PCC 6803]
          Length = 147

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 66/117 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+    ++   +++  G+      +G+EALE  +   PD++++DI +  ++G E+
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++IK D + + +PVI  ++   + D     + G +AYI+KP      + TIK+ + 
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 234

 Score =  161 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK+++V+D +  +++ +  +E SGY   +   G EAL +  +    +I++D+ L ++SG
Sbjct: 5   SKKILVVDDEKKIVEVVKSYLEHSGYEVYEAFTGKEALYVFEKVPLSLIVLDLMLPDLSG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K I++ S    +P+I +TA A + D  +    G + YI+KP S    +  +   + 
Sbjct: 65  EEICKIIRKKSR---VPIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
 gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
          Length = 233

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +      NG +AL     ++P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S     P+I ++A +   D+    + G + YI KP      +  ++  +  
Sbjct: 65  QVCREIRAKSVT---PIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRR 121


>gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D+E  + + R  +   GY  L   NG E L++     PDV+++D+ + ++ 
Sbjct: 1   MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++++E      IPV+ +TA     +  +    G + Y+ KP +L   +  ++  +
Sbjct: 61  GFEALRRLREGGST--IPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 229

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    +E  G+  ++  NG EAL L  +  PD+I++D  +  ++G+E
Sbjct: 7   TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++K  ++ + IP+I ++A + + D+ R  + G + Y+ KP S+   M  ++  +  
Sbjct: 67  ICRRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125


>gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
 gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
          Length = 241

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  +G EA +LA  +    I++D+ L E+ 
Sbjct: 1   MANEILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 234

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D+E   KL    +   GY  L+  +G+ ALE+  Q + D++I+D+ L  + 
Sbjct: 1   MSKRILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALEITEQDEVDLVILDVMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ +  +I+E    +  P++ ++A     D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GISVCMKIRES---KTTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|229592349|ref|YP_002874468.1| putative two-component response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229364215|emb|CAY51897.1| putative two-component response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 244

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 57/121 (47%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L +  +  +G+      +G    +   +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGAGFRQAMNEAPCDLVILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++     ++P+I +TA + + D     + G + YI KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|255305493|ref|ZP_05349665.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 224

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D E  + L +D  E +GY     ++G +AL+   ++ PD+I++DI + EI 
Sbjct: 1   MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+   +    P++ +TA     D+    + G + YI KP  L      +  ++
Sbjct: 60  GIEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|209884911|ref|YP_002288768.1| response regulator protein [Oligotropha carboxidovorans OM5]
 gi|209873107|gb|ACI92903.1| response regulator protein [Oligotropha carboxidovorans OM5]
          Length = 457

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    +    +  +    G EAL++ R+ + D++++D+ + +I 
Sbjct: 1   MSARVLVVDDVPANVKLLEARLSAEYFDVVTASCGREALDICRRAECDIVLLDVMMPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +Q+K D     IPV+ VTA     D  R    G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRQLKSDPRTHFIPVVMVTALDSPADRVRGLDAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 48/111 (43%), Gaps = 1/111 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED   + +    ++    +      +  +AL  A     D++I+ + L+   GL 
Sbjct: 157 RILLVEDRPSSYERLAPILAEE-HTVDVEPDPAQALFHAADGNYDLLIVSLNLENYDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++A++         R  + G   Y+ +P+  +  + 
Sbjct: 216 LCSQARSLERTRNVPLLALSNADNNVQLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 233

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M +   K+++V+D     +  +  +E S +      N  E  ++  ++ PD++I D+ + 
Sbjct: 1   MSQVSGKILLVDDEPGLREAVQAYLEDSHFNVDVASNANEGWDILEKNLPDLVITDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ G +  ++++E+   + +PV+ +TA  M  D  +  + GC+AY+SKP      +  + 
Sbjct: 61  QVDGYQFLQKLREEPRFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVN 120

Query: 118 KYI-GEA 123
             +   A
Sbjct: 121 NLLERRA 127


>gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 225

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 228

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +H+  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEALDGKEALSIFEEHEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ I
Sbjct: 61  GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLI 117


>gi|119509005|ref|ZP_01628156.1| Response regulator receiver domain protein (CheY) [Nodularia
           spumigena CCY9414]
 gi|119466171|gb|EAW47057.1| Response regulator receiver domain protein (CheY) [Nodularia
           spumigena CCY9414]
          Length = 121

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 70/120 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED+    ++  DL++ SG I     +G+EALE  +   PD++++DI +  ++G
Sbjct: 1   MSTVLIVEDSIAQREMITDLLKASGLIVTHAHDGVEALEAIQTAPPDLVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K + + Q +PV+  ++   + D     K G +AYI+KP   +  + T+K+ + 
Sbjct: 61  YEVCRRLKSNPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120


>gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 910

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 69/117 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DNE+N+ +   ++  +G       NG E LE   +   D+I+MD+Q+  + G E
Sbjct: 789 KILLVDDNEINLYMMEAILLAAGAEVTLAENGQECLERLEESSYDLILMDVQMPVLDGYE 848

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I++D + + +P+IA+TA A+  D E+  + G   +++KP  +     +I K +
Sbjct: 849 TTRRIRKDEKYRALPIIAITANALSDDIEKCFEAGMNDHVAKPFKIEELDASIAKCL 905


>gi|330962192|gb|EGH62452.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 245

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +  +G+      +G    +   +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAGFRQAFNEASSDLLILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K +++      +P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
 gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
          Length = 233

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D      + R  +E + Y  L+  +   A  L    KP +I++D  L   SG+
Sbjct: 5   KTILIVDDESAIRDMLRVALEMADYHCLEAADTQSAHALIIDQKPSLILLDWMLPGTSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +++K+D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 65  DLARRLKKDEFTADIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 124


>gi|193212324|ref|YP_001998277.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193085801|gb|ACF11077.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 236

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 64/119 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED+     L +  +E +GY  L    G EALE  RQH  +++++DI L  I G E
Sbjct: 5   TILIVEDDRNLAGLLKYNLEKAGYSCLHAATGEEALEQLRQHAVNMVLLDIMLPGIDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++D +  ++P++ +TA   + D+    + G + Y+ KP S       I+  +  
Sbjct: 65  VCRRIRQDVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123


>gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 236

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D      + R  +E  G+  ++  +G  AL +AR  KPD++++D+ + E+ G
Sbjct: 1   MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E    ++  ++    PVI +TA     D+    + G + Y++KP ++   +  I+  + 
Sbjct: 61  YEF---LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 229

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I++D+E  + + R  +   GY  L   NG E L      +PDV+++D+ + ++ 
Sbjct: 1   MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++E      +PV+ +TA     +  +    G + Y+ KP +L   +  ++  +
Sbjct: 61  GFEVCRRMREGGST--VPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
 gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
          Length = 229

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++   L++ +GY  L   N   A+       PD++++D  L   S
Sbjct: 1   MTKRILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASLTGLLPDLVLLDWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  + I+ +   + IPVI +TA   + D     + G + YI+KP S    +  ++  I
Sbjct: 61  GIQFIQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMI 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|241763956|ref|ZP_04761998.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241366779|gb|EER61220.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 235

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  +V+IVED     +L    +  +G+  + + +G  A        PDVI++D  L  
Sbjct: 1   MKKLPRVLIVEDEPAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SGL + ++ + D+  + IP++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  QSGLMLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 225

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++++D+    +L   +++  G+   +  NG +AL+   + K D+ ++DI + ++ G
Sbjct: 1   MNKVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  KQ++   E  ++P++ +TA +    + +  + G + Y++KP  +   +  IK  + 
Sbjct: 61  YEFCKQVRRYYE--DMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 226

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 60/122 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I+ED     +L    +E  GY  +   +G+E L  A    PD+II+D+ L  + G
Sbjct: 1   METILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANAGHCHPDLIILDLMLPGMLG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K +K+      IPVI +TA   + D+    + G + Y+ KP S       +K  + 
Sbjct: 61  TEVCKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 242

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VED +         +E  GY  +   +G  A+E   +H+ D+I++D+ L ++SG 
Sbjct: 6   RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+   +  ++P+I +TA     D     + G + YI KP S    +  ++     
Sbjct: 66  RVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRR 122


>gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 242

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 81  CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 135


>gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 261

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++ +D+    ++ R   E      +   +G EALE+  + +PDV+I+D+ + ++ G E
Sbjct: 34  KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++I++     + P+I +TA   + D     + G + Y++KP S    +  I+  +  
Sbjct: 94  ACREIRKKW---DTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149


>gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
 gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
          Length = 1128

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +TA +   D  R  + G   Y+SKP +       I+ ++
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 839


>gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++ +D+    ++    +E +G       +G  AL+   +  PD++++DI + E+ 
Sbjct: 1   MPHHILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGRRAPDLVVLDIGMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++    + ++PV+ ++A   + D     + G + Y++KP S    +  +   +
Sbjct: 61  GLEVCRRLR---HISDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVIL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 227

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++E+  + A+   +G  A+E  R+ KPD++++D+ L    
Sbjct: 1   MNAKILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+       +P++ +TA +   D  R  + G + YI+KP      +  ++  +
Sbjct: 61  GIEVCREIR---RTSGVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARL 117

Query: 121 GEA 123
            ++
Sbjct: 118 RQS 120


>gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 239

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D      L    ++ SG+  +   +G +AL++  + K D++++DI L E SG
Sbjct: 1   MTKVLVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIMLPEESG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++T++++ +    +IP+I +TA   + D+    + G + Y++KP S    +  +   + 
Sbjct: 61  VDVTRELRAEKN--QIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
 gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
          Length = 228

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    +++    + + GY     RNG E +E AR+  P +II+D+ + E+ G+E
Sbjct: 7   KILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKNPHLIILDVMMPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + I++   LQ+  +  +TA      +      G + YI+KPI   +F+  +K  +  
Sbjct: 67  ACEIIRKTKGLQDSIIAFLTARNEDYSQVAGFDAGADDYITKPIKPKVFISKVKALLRR 125


>gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 221

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D     KL +D +   GY   +  +G E L+L  Q   D++I+DI + +I G
Sbjct: 1   MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTYDIVILDIMMPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E+S+   +P+I +TA A + D+    +   + Y+ KP +  + +  +K  + 
Sbjct: 61  WSVCRKIREESQ---VPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229592371|ref|YP_002874490.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|312962826|ref|ZP_07777313.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
 gi|229364237|emb|CAY51934.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
 gi|311282853|gb|EFQ61447.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
          Length = 227

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  K G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVLRRA 120


>gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 225

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI +  + G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|26987637|ref|NP_743062.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148546183|ref|YP_001266285.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167035477|ref|YP_001670708.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|170720155|ref|YP_001747843.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|24982318|gb|AAN66526.1|AE016281_7 DNA-binding response regulator ColR [Pseudomonas putida KT2440]
 gi|13892068|gb|AAK39631.1| ColR [Pseudomonas putida]
 gi|108936753|emb|CAK47552.1| ColR protein [Pseudomonas putida]
 gi|148510241|gb|ABQ77101.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166861965|gb|ABZ00373.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|169758158|gb|ACA71474.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
 gi|313497270|gb|ADR58636.1| ColR [Pseudomonas putida BIRD-1]
          Length = 227

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120


>gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 232

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K   ++I +D+ +  +      +  G+      NG EA+E      PD+I++D+ + E
Sbjct: 1   MAKGPHILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSDNPDLIVLDMMMPE 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+++ ++I+  S    +P+I +TA + + D+    + G + YI+KP S+   +  IK 
Sbjct: 61  MNGVDVCREIRRMS---NVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 VLRR 121


>gi|254294350|ref|YP_003060373.1| response regulator receiver modulated diguanylate cyclase [Hirschia
           baltica ATCC 49814]
 gi|254042881|gb|ACT59676.1| response regulator receiver modulated diguanylate cyclase [Hirschia
           baltica ATCC 49814]
          Length = 459

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 64/119 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D E N KL    +    +      +G++A++ A   +PD+I++D+ +  + 
Sbjct: 1   MSARVLVVDDIEANRKLLCAKLAHEYFQVTTAVDGLDAIDKAIATEPDIILLDVMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  +++K D   + IP++ VTA   + D  +  + G + +++KPI+    +  ++  
Sbjct: 61  GFEACRELKFDPRTEHIPIVMVTALNEREDRLKGLRAGADDFLTKPINDLQLLSRVRAL 119



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGME-ALELARQHKPDVIIMDIQLQEISG 61
            +V++V+DNE         +ET          G +     A     D++++ +  ++  G
Sbjct: 154 ARVLVVDDNERQAARICRYLETDHKPMTLANAGAKPGGVGAGAATVDIMVLSLGGEKYDG 213

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++   ++     +++P++A+     +    R    G    + +PI     +  +K  + 
Sbjct: 214 LKLCAYLRNLEATRDLPILAIVGAEDEALAVRALDLGASDILVRPIDPEELLARVKTQVS 273

Query: 122 E 122
           +
Sbjct: 274 K 274


>gi|218262520|ref|ZP_03476947.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223331|gb|EEC95981.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii
           DSM 18315]
          Length = 963

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++ +DN+  ++     +    Y+ ++  NG EAL +  +  P ++I D+ + E++GL
Sbjct: 712 QTILLADDNQEVLQYLEQQL-CLDYVVVKAFNGKEALAMIEESYPHIVISDVMMPEMNGL 770

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K+IKE+     IPVI +TA +M    E     G + YI KP  +S+    I+  +
Sbjct: 771 ELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNIL 828


>gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 236

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D      + R  +E  G+  ++  +G  AL +AR  KPD++I+D+ + E+ G
Sbjct: 1   MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLMMPEMGG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E    ++  ++    PVI +TA     D+    + G + Y++KP ++   +  I+  + 
Sbjct: 61  YEF---LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis AF2122/97]
 gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T92]
 gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T17]
 gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           T46]
 gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG]
 gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis
           AF2122/97]
 gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
          Length = 230

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    +  R  +  +GY      +G+EAL++    +PD +++D+ +  + 
Sbjct: 1   MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +
Sbjct: 61  GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
 gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
          Length = 232

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D+     L ++     GY  L   NG+EAL+L  +  PD++I+D+ + E+ G
Sbjct: 1   MVKLLLADDDARLSDLIKEYFSGEGYEVLHAWNGVEALDLLVKQSPDLVILDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  K I+  S+   +PVI +TA     D     + G + Y+SKP +    +  IK  + 
Sbjct: 61  FETLKLIRAKSK---VPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|317968088|ref|ZP_07969478.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 256

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +L    +E SG+   +  +G++   LA Q+ PD++++D+ L ++ GL +
Sbjct: 5   ILLIEDDGDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLVLLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IPV+ +TA     D+      G + Y++KP  L   +  IK  +  +
Sbjct: 65  CQRLRRDERTSRIPVLMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRRS 123


>gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 248

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    +   GY  +   +G EAL   ++ +PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALTCFQECEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125


>gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
 gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
          Length = 229

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED     +L RD +E S +      +G   L+ A Q   D+II+DI L +++G
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 223

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +    +  + ++  GY  +   +G+EAL + + +  D++I+DI +  + G
Sbjct: 1   MAKILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +  +E +    IP+I +TA   + D+ +  + G + YI+KP S  + +  +   + 
Sbjct: 61  FSVCRVSREMT---NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
 gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++VED +   +     ++  GY      +G E L LA     DV+++D+ L  I+
Sbjct: 1   MPKKILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPSIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI ++I+  S+   +P+I +TA     D       G + YI KP ++   +  I+  +
Sbjct: 61  GIEICRRIRTQSQ---VPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229083816|ref|ZP_04216127.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699473|gb|EEL52147.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EALEL +Q   D+I++D+ +  + G
Sbjct: 1   MIKILLVDDEERMLRLLDLFLSPRGYFCMKATSGIEALELIQQKNFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   L  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---LCNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLIARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|78778516|ref|YP_396628.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712015|gb|ABB49192.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 260

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+     L    +E SG+   +  +G++   LA Q+ PD+I++D+ L  + 
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D     IP++ +TA     D+      G + YI+KP  L      IK  +
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
 gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
          Length = 229

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +  +   +D  E  GY  +   NG EA+E   +   D+I++DI +  I 
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+        P+I ++A   + D+ +    G + YI KP S+      ++ ++
Sbjct: 60  GFQVCQKIRNKV---SCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|306520551|ref|ZP_07406898.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
          Length = 210

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+    +L  + +   GY      +G+E ++  +Q   D++I+DI +  + 
Sbjct: 1   MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I++ S    +P+I +TA   +GD+ +     C+ YI+KP S ++ ++ ++  +
Sbjct: 61  GYGVCKMIRKSS---SVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|117928482|ref|YP_873033.1| response regulator receiver modulated diguanylate cyclase
           [Acidothermus cellulolyticus 11B]
 gi|117648945|gb|ABK53047.1| response regulator receiver modulated diguanylate cyclase
           [Acidothermus cellulolyticus 11B]
          Length = 304

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 60/117 (51%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+    +     +   GY  L   +G  A+ +     PD++++++ L  I G+E+T
Sbjct: 2   LVVDDDPAMRQFLETNLRLDGYDVLTAADGPMAVAIVATQLPDLVLLEVGLPGIDGIELT 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +EDS    +PVI VTA +   D     + G + Y++KP  ++  +  ++  +  
Sbjct: 62  RRWREDSRTATLPVIMVTARSSTADRVLGLQAGADDYVTKPFDVAELLARVRSTMRR 118


>gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1323

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 71/120 (59%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VEDN +N ++  +L+  SG +     NG EALE   QH  D+I+MDIQ+  + G  
Sbjct: 964  RVLLVEDNAINREVVLELLNNSGLVIETAVNGQEALERVSQHAFDLILMDIQMPLMDGYS 1023

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             T+ I+     +++P++A+TA A + D +     G   +I+KP++ +   E +++++  +
Sbjct: 1024 ATRAIRALPGWEQVPILALTASAFEEDRKACESAGMNDFIAKPVTPAKLFEALQQWLPHS 1083


>gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 255

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     ++    ++ +GY  +   +G EALE      PD++++D+ L ++ G  
Sbjct: 11  TILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVMLPKMDGFA 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 71  VCRRLRAESC---VPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRR 126


>gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I+ED      + R  +E +G+  L   NG E +ELAR+ +PD++I+D+ L  + 
Sbjct: 1   MNATILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +++++S   ++ +I +TA + + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GMEVAARLRQES---DVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|290560102|pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
           Yycf
          Length = 120

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    +    +   GY      +G EA+E+  + +PD+I++DI L    
Sbjct: 1   MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|320012873|gb|ADW07723.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 244

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++ ED+    +L R  +   G+      +G  AL  A +  PD++++D  L  + 
Sbjct: 1   MSTYVLVAEDDRKQAELIRRYLAHDGHEVSVVHDGRTALGEATRRPPDLLVLDWMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++   EL   P++ +TA + + D  R    G + Y++KP      +  I+  +
Sbjct: 61  GLEVCRRLRGAGEL---PILMLTARSTEDDLLRGLDLGADDYMTKPFRPRELVARIRTLL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1977

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 72/119 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDNE N+      ++  GY  L  +NG EA++L +  +PD+I+MDIQ+  + GL  
Sbjct: 1859 ILLAEDNEANISTISSYLKAKGYRVLVAKNGQEAIDLGQAAQPDLILMDIQMPGVDGLSA 1918

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +Q+++      +P+IA+TA AM GD +R    G   Y+SKP+ LS  +  I++ + ++
Sbjct: 1919 IQQLRQAPSSAHLPIIALTALAMNGDRDRCLAAGANEYLSKPVKLSQLVILIQQLLTQS 1977


>gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1133

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            V++V+D  +N+++  + ++ + Y   Q  +G EAL     +   D+I++D+ +  +SG 
Sbjct: 723 HVLVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDVMMPNMSGY 782

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+  QI+E    Q +PV+ +TA     D     + G   Y++KP +    +  I+ +I
Sbjct: 783 EVCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHI 840


>gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus
           epidermidis VCU045]
          Length = 219

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +    +    ++  GY      +G +A++L  + +PD++++DI L    
Sbjct: 1   MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E   +P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 226

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++E+  Y      +G +AL+   +  PD++++D+ L  + 
Sbjct: 1   MSTRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI + I+ +S   ++P+I +TA     D     + G + Y++KP      +  +   +
Sbjct: 61  GVEICRLIRSES---DVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|318040594|ref|ZP_07972550.1| two component transcriptional regulator [Synechococcus sp. CB0101]
          Length = 256

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +L    +E SG+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDSDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L   +  IK  +  +
Sbjct: 65  CQRLRRDERTTGIPILMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRRS 123


>gi|260771196|ref|ZP_05880123.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
 gi|260613793|gb|EEX38985.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
          Length = 1113

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 60/115 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G E L+   + KP+++++DI +  +SG ++ 
Sbjct: 709 LVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEKPELLLLDIMMPGMSGYQVC 768

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +   +PVI +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 769 EELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 823


>gi|260223180|emb|CBA33484.1| hypothetical protein Csp_B19290 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 396

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I ED     +  + ++E  G+  L   +G+EAL +A+ HKPD+++ D+ +  + G  
Sbjct: 14  KILIAEDEPSLRENLQWMLELEGFEVLAACDGLEALAMAQTHKPDLVLTDVMMPGLDGFG 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E+     +P+I +TA A + D       G + Y++KP      +E +   +  +
Sbjct: 74  LVKALRENPGSSTLPIIMLTARADRTDTRTGMNLGADDYLTKPCRREELLEAVHARLERS 133


>gi|228989718|ref|ZP_04149700.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228995917|ref|ZP_04155575.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003534|ref|ZP_04161352.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757772|gb|EEM06999.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763889|gb|EEM12778.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228770052|gb|EEM18634.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EALEL +Q   D+I++D+ +  + G
Sbjct: 1   MIKILLVDDEERMLRLLDLFLSPRGYFCMKANSGIEALELIQQKNFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLVARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
 gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
          Length = 240

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D    +++ R   E  GY  L   +G EAL+ A Q  PD+I++D+ + E+ G+E
Sbjct: 20  RILIVDDEPDIVEMLRCFFERRGYFVLTATDGAEALKKAEQQ-PDMILLDVNMPELDGME 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+   +    P++ +TA   + D  +    G + YI KP SL+     +  ++  
Sbjct: 79  VCRRIR---DFVPCPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRR 134


>gi|153875315|ref|ZP_02003172.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152068221|gb|EDN66828.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 383

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D + N+ +    +   G+  L  +NG +AL ++    PD+I++D+ +  +SG E
Sbjct: 8   TILIVDDIQENISVLFRFLSDEGFKVLIAQNGEQALRISEIGHPDLILLDVMMPGMSGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  Q+K + + QEIP+I +TA     D+ +    G   YI+KPI     +  +  +I
Sbjct: 68  VCNQLKNNEKTQEIPIIFMTALTDIVDKIKGFSLGAADYITKPIQQEEVLARVNTHI 124


>gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui]
 gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
          Length = 241

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D      +    +   GY  +   +G E L + R+  P+++I+D+ + ++ G  
Sbjct: 7   KILIVDDETSIRTILETRLSMIGYDVISASDGEEGLHIFRREYPNLVILDVMMPKLDGYG 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 67  VCQEIRKES---DVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRR 122


>gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
 gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL R2-561]
 gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes
           J0161]
 gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
          Length = 236

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 215

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 63/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++M+V+D+   + L +D +E  GY  +   NG EALE   +  PD+II D+ + E+ G 
Sbjct: 10  KRLMLVDDDPNLILLVKDYLEFRGYDVVTAENGREALEKLEEDLPDLIICDVMMPEMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K ++ED     IPV+ ++A     D  +    G + YI KP      +  ++  + +
Sbjct: 70  TLVKHVREDPRTSWIPVLFLSAKGQSQDRVKGLSTGADVYIVKPFEPEELVAQVESSLKQ 129

Query: 123 A 123
           A
Sbjct: 130 A 130


>gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQE 58
           M  KK+++V+D  L  KL  D ++  GYI L+  +G +AL++    K  D++I+D+ L E
Sbjct: 1   MSNKKILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPE 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G  + ++I++ S     P+I +TA   + DE      G + YI+KP S +I +  +  
Sbjct: 61  YDGWTVCREIRKKS---STPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNA 117

Query: 119 YIGEA 123
            +  A
Sbjct: 118 VLRRA 122


>gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I +DNE  + + +      G+  L   +G+EA+++  ++ P ++++D+ + +  
Sbjct: 1   MSKYILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIFNKYSPLLLLLDVMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+++S    +P+I +TA A + D       G + YI KP S    M  I+  +
Sbjct: 61  GFEVCREIRQNS---NVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1286

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 74/116 (63%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN+ N+K F   +   GY  L   NG +A+ELA  H+PD+I+MDIQ+  I GLE 
Sbjct: 1166 ILLAEDNKANIKTFSSYLSAKGYDILLATNGQQAIELATIHQPDLILMDIQMPGIDGLEA 1225

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +QI+ D +L  IP++A+TA AM GD +R  + G   Y++KP+ L     TI++ +
Sbjct: 1226 IRQIRLDPQLVNIPIVALTALAMTGDRDRCLQAGANDYLTKPVKLKQLATTIQQLL 1281


>gi|332708948|ref|ZP_08428919.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332352490|gb|EGJ32059.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 373

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+D+  N+ L + L+E  GY      NG  ALE      P+++++D+ + E+ G E+
Sbjct: 15  ILAVDDSPDNLFLLQTLLEEEGYEITLAENGRVALERIESSPPELVLLDVMMPEMDGFEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           TK+I+ + +L  IP++ +TA+       +    G + +I KP+ +   +  ++  + 
Sbjct: 75  TKRIRSNPKLPFIPILLITAYDHPS-VVKGLDMGADDFIRKPVEVDELLARVRSLLR 130


>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
 gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
          Length = 1618

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDNELN  +  +L+  +G+      NG  AL+L      DV++MD+Q+  + G   
Sbjct: 1267 VLLVEDNELNQMVAVELLRDAGFAVDVAGNGERALQLLDGKNYDVVLMDMQMPVMDGETA 1326

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T++++ D    ++PVIA+TA AM+ D +R    G   +++KPI  S+    + ++I 
Sbjct: 1327 TRRLRADPRHADLPVIAMTANAMEADRQRCFAAGMNDHVAKPIEPSVLWAALARWIR 1383



 Score =  112 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 65/120 (54%), Gaps = 7/120 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
            ++V++V+DN     +  +++++ G+   Q  +G+EALE  RQ         ++++D  + 
Sbjct: 1116 RRVLVVDDNHTAATVLSEMLQSMGFHVDQAYSGLEALETLRQATQQQKPYGLLLLDWHMP 1175

Query: 58   EISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             + G+E+   I+    L EIP ++ VTA+  +      R  G EA + KP++ S+  +T+
Sbjct: 1176 GMDGVELAGHIRSMG-LAEIPQMLMVTAYGREDVMRAARAQGIEAVLIKPVNASVLFDTL 1234


>gi|126031093|pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
           Active Double Mutant D10a And D53e.
 gi|126031094|pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
           Active Double Mutant D10a And D53e
          Length = 127

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VE      ++   ++E +G+  ++  +   A+    +  PD+I+++  L   S
Sbjct: 1   MARRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLEWMLPGGS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K +K +S  ++IPV+ +TA   + D  R  + G + YI+KP S    +  IK  +
Sbjct: 61  GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  + V+IV+D E    L    +E +G+  L+  +G EAL L  QH  D +++D+ + + 
Sbjct: 1   MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  +  +I+E S   ++P++ +TA   + D+ +  K G + YI KP S    +  ++  
Sbjct: 61  DGFAVCARIREQS---DVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 240

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED     +L    +  +G+      +G  AL LA ++ PD++++D+ L ++ G 
Sbjct: 11  ARLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDVDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T++++E    Q   V+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 71  EVTRRLRERGREQA--VLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128


>gi|262401680|ref|ZP_06078246.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
 gi|262352097|gb|EEZ01227.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
          Length = 1112

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 62/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G E LE  ++ KP+++++DI +  +SG ++ 
Sbjct: 708 LVADDEPVNLRVLDSFLRLEGYRVHTVQDGNEVLEAVKREKPELLLLDIMMPGMSGYQVC 767

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +  E+P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 768 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIIAHL 822


>gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
 gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
          Length = 253

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+E   ++   ++   G+  +   +G +ALE+ R  KPD++++D+ L    
Sbjct: 30  MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +QI+ +S   ++P++ +TA +   D  R  + G + Y+ KP   +  +  ++  +
Sbjct: 90  GIEVCRQIRGES---DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL 146

Query: 121 G 121
            
Sbjct: 147 R 147


>gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 226

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +     + + GY      +G+  L LAR   PD+ I+D  L  ++
Sbjct: 1   MTAHILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWMLPGLT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI ++++       +PVI +TA     D       G + Y+ KP S+   +  I+ ++
Sbjct: 61  GLEICRRLRATGST--VPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+E   +L    +    Y      +G  AL    + KP +I++D+ L  I G 
Sbjct: 5   QRILIVDDDENIAELISLYLMKECYETKIVGDGESALADFDEFKPHLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S     P+I ++A     D+    + G + Y+ KP      +  +K  I  
Sbjct: 65  QVCREIRAKSGT---PIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRR 121


>gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 231

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +     ++  G+      NG EAL LA ++  D+ ++DI L  + G E
Sbjct: 7   RILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIMLPGMDGYE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    +PV+ ++A   + D+    + G + Y++KP  +   +  ++  +  
Sbjct: 67  LCRRLRSKT---TVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122


>gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium kansasii ATCC 12478]
          Length = 240

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D    ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 14  ARILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMPGMDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 74  GVLRRLRADGV--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131

Query: 123 A 123
           A
Sbjct: 132 A 132


>gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 237

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E   +     +   GY  +    G EAL      +PD++++D+ L  +SG
Sbjct: 1   MTRILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDEQPDLVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      ++PVI +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRELRSRG---DVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    + +  +E  G+  +   +G EA+E A++H P +I++DI L    G+E+
Sbjct: 6   ILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKHVPALILLDIMLPYRDGMEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++++    ++P+I +TA   + D+    + G + Y++KP S    +  +K  +  
Sbjct: 66  CREVRKE---HDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRR 120


>gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630]
 gi|115249500|emb|CAJ67315.1| Two-component response regulator [Clostridium difficile]
          Length = 224

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D E  + L +D  E +GY     ++G +AL+   ++ PD+I++DI + EI 
Sbjct: 1   MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+   +    P++ +TA     D+    + G + YI KP  L      +  ++
Sbjct: 60  GIEVCNRIR---DYISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 225

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI +  + G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 227

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+ +V+D++   ++    +E  G+   Q  +G  AL+  + + P ++I+DI L  I G+ 
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNPPRLVILDIMLPGIDGIA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++     ++P+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 66  LCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121


>gi|254220896|pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
           Subtilis
 gi|254220897|pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
           Subtilis
          Length = 130

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +    +    +   GY      +G EA+E+  + +PD+I++DI L    
Sbjct: 1   MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++     ++P+I +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 229

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++KV++V+D      + R  +E  G+  +   +G  A++L R+  PD++++D+ L  I G
Sbjct: 1   MRKVLVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++    + +  VI VTA A + D+      G + Y++KP S       +K  + 
Sbjct: 61  LEVLRRLRA---VSDAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 239

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++E+  Y      +G +AL+   +  PD++++D+ L  + 
Sbjct: 14  MSTRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLMLPGLD 73

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI + I+ +S   ++P+I +TA     D     + G + Y++KP      +  +   +
Sbjct: 74  GVEICRLIRSES---DVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRL 130

Query: 121 GE 122
             
Sbjct: 131 RR 132


>gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 234

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  + G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + YI+KP S    +  ++  + 
Sbjct: 61  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|238794386|ref|ZP_04637997.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
 gi|238726287|gb|EEQ17830.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
          Length = 232

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL L   +  D++++DI +   +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLL-DNSIDLLLLDIMMPRKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K++++     + PVI +TA   + D     + G + Y++KP +    +  I+  + 
Sbjct: 60  IETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio
           furnissii NCTC 11218]
          Length = 1113

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 60/115 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    +   GY     ++G E L+   + KP+++++DI +  +SG ++ 
Sbjct: 709 LVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEKPELLLLDIMMPGMSGYQVC 768

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++  +   +PVI +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 769 EELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 823


>gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
 gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
          Length = 238

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++D+ +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 66  VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRS 122


>gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 233

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSSILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAHNLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GISFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|157363872|ref|YP_001470639.1| response regulator receiver protein [Thermotoga lettingae TMO]
 gi|157314476|gb|ABV33575.1| response regulator receiver protein [Thermotoga lettingae TMO]
          Length = 124

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 73/122 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+E+  K+    +   GY   + ++G EALE  RQ KPD++I+DI +  I 
Sbjct: 1   MGYRVLVVDDSEVLRKIVSFNLIKEGYSVQEAKDGREALEKLRQEKPDLVILDIMMPYID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + +++D  L+EIPVI +TA   + D +   + G  ++++KP S    +E +++ I
Sbjct: 61  GFEVLRTMRKDENLKEIPVIMLTAKGGESDPKTALELGANSFLTKPFSPLKLLEEVRRVI 120

Query: 121 GE 122
             
Sbjct: 121 QR 122


>gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 234

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  +   GY      +G EAL+L    +PD++++D  L E+ G
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQMLPEVEG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+  S+    PVI VTA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  TEVLRQIRTKSQT---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08]
 gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07]
 gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08]
 gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07]
          Length = 223

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED +    +  + ++  GY  +   +G+EAL + + +  D++I+D+ +  + G
Sbjct: 1   MAKILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNNIDLMILDVMMPYLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +  +E +    IP+I +TA   + D+ +  + G + YI+KP S  + +  +   + 
Sbjct: 61  FSVCRVSREMT---NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|209548893|ref|YP_002280810.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534649|gb|ACI54584.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 457

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  +   +G  AL +  +++ D+I++DI +  I 
Sbjct: 1   MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K + +   IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 61  GFEVCERLKANRKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+    + +     ++      L   +   AL  A +   D++I++    +   L +
Sbjct: 158 ILLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + +P++ +T         R    G   YI +P+  +  +      I  
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRR 274


>gi|22299981|ref|NP_683228.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296166|dbj|BAC09990.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 163

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 71/120 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +M+V+D+     +  +L++  GY  ++  +G+EA E  +   PD++I+D+ +  ++G
Sbjct: 44  MATIMVVDDSPTLRAMIVELMKEQGYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNG 103

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + IK ++  Q++PVI  T  + + D    +K G +AYI+KP   +  + ++K+ +G
Sbjct: 104 YELCRWIKGEAVSQKVPVIMCTTKSEEFDIHWGKKQGVDAYITKPFDPAELVASVKQLLG 163


>gi|116748153|ref|YP_844840.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697217|gb|ABK16405.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED++  + L    +  +G+     + G EAL +A++ +P +I++D+ +    G E+
Sbjct: 6   VLIVEDDDDILHLLAYNVRAAGFAVFTAQEGYEALRIAKERRPGLIVLDLMIPGADGFEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K  S+ + IPVI +TA   + D     + G + Y+ KP S    +  I+  +  +
Sbjct: 66  CRELKRGSDTRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAVLRRS 124


>gi|312962809|ref|ZP_07777296.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311282836|gb|EFQ61430.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 244

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 57/121 (47%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L +  +  +G+      +G    +   +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGAGFRQAMNEAPCDLVILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++     ++P+I +TA + + D     + G + YI KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|189463997|ref|ZP_03012782.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM
            17393]
 gi|189438570|gb|EDV07555.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM
            17393]
          Length = 1329

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN+   +       ++ Y  +   NG E +E A ++ PD+II DI +  + G+E+
Sbjct: 1076 ILIVEDNDDIREYIATSF-SNNYHIMTATNGKEGIEQALKYIPDIIISDIMMPVMDGIEL 1134

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IKED     IPVI +TA     D+E   + G ++Y++KP S  +    +   +
Sbjct: 1135 CKLIKEDVRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLHSRVHNLL 1190


>gi|104783385|ref|YP_609883.1| two-component response regulator GltR [Pseudomonas entomophila L48]
 gi|95112372|emb|CAK17099.1| two-component response regulator GltR [Pseudomonas entomophila L48]
          Length = 240

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 56/121 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L +  +  SG+      +G            D++I+D+ L +  G 
Sbjct: 6   KSILMVDDDQDIRELLQTYLARSGFQVHAEADGQGFRRALDSSPCDLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++   L  +P+I +TA + + D     + G + Y+ KP S       IK  +  
Sbjct: 66  SLCRWVRQHPRLSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1788

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 67/118 (56%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VED+ +N  L R+++  +    +   +G  AL+L ++   D+I MDIQ+  + G  
Sbjct: 1331 RVLLVEDHPINQALAREMLSLAKLQVITADHGQHALDLLQEASVDLIFMDIQMPVMDGFS 1390

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             T+ I+ D   Q IP+IA+TA AM  D ++   GG   ++ KPI   +    I +++G
Sbjct: 1391 ATQAIRADPRWQHIPIIAMTAHAMADDRQKCLDGGMNDHLGKPIDPPLLFAKITQWLG 1448



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
            +V++V+DN+   ++ + ++++ GY       G   + L           D+I+MD  + +
Sbjct: 1182 RVLVVDDNQTVREVLQRMLKSFGYWVDLAAEGPTGVALVESALQQGQPYDLILMDWHMPQ 1241

Query: 59   ISGLEITKQIK--EDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            + GL+ ++QI+  +    Q  PV I   A+  +     + + G   ++ KP + +     
Sbjct: 1242 MDGLQASEQIRHLQGVRAQRTPVMIMAAAYGQEDSHTAVSEPGFAGFLEKPTTPANLFGA 1301

Query: 116  I 116
            I
Sbjct: 1302 I 1302


>gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 232

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D +    L +  +E +GY      +G  AL+L  Q + D +++D+ L E+ G
Sbjct: 1   MSRILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +Q++E+S    IPVI VTA   + D     + G + YI+KP S    +  +K  + 
Sbjct: 61  MSVLRQMRENSI--RIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E   ++ +  +E++GY      +G  A  +  ++KPD++++DI L  I G++
Sbjct: 7   KILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIMLPNIDGID 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I+++ E    PVI +TA     D+    + G + YI KP      +  IK  +  
Sbjct: 67  VLKWIRKEYET---PVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRR 122


>gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae]
          Length = 253

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D+    +  R  +  +GY      +G+EALE+  + +PD +++D+ +  + GLE
Sbjct: 27  RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 86

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  I+  +  
Sbjct: 87  VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRR 143


>gi|71906060|ref|YP_283647.1| PAS [Dechloromonas aromatica RCB]
 gi|71845681|gb|AAZ45177.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 787

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 69/121 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++ ED+ +N ++  +++E    +     NG+ A+E  R+   D+++MD+Q+ E+ GL
Sbjct: 661 RSVLLAEDSWVNREVVVEMLEDQLLVVDVVENGVAAVERVRERDYDLVLMDVQMPEMDGL 720

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E T++I+   + + +P+IA+TA A   D +   + G   Y++KP S       +  ++ E
Sbjct: 721 EATRRIRAMPQRERLPIIALTANAFAEDRQACLEAGMNDYLAKPFSPDKLFARVLHWLLE 780

Query: 123 A 123
           A
Sbjct: 781 A 781


>gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 222

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IV+D+     L +   E  GY+  +  +G E LE    H  D+I++D+ +    G
Sbjct: 1   MQKILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSFDLILLDVMMPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   +I+        PVI +TA   + D+      G + YI+KP S    M  IK  + 
Sbjct: 61  FQTLSEIR---GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 668

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED  +N       +   G+      +G EAL L  +   D+++MDIQ+  ++GL+
Sbjct: 546 RILLAEDEPVNRIFTVRALTKLGHQVETAVDGREALALLGRAPFDLVLMDIQMPRLNGLD 605

Query: 64  ITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+          IPV+A+TA+AM  D ER  + G + Y++KP      +  +++ +
Sbjct: 606 ATRMIRSGQVPGLSASIPVVALTAYAMDSDRERGLEAGMDEYVTKPFEPQELVAAMERAL 665

Query: 121 GE 122
            +
Sbjct: 666 RK 667


>gi|262198125|ref|YP_003269334.1| response regulator receiver protein [Haliangium ochraceum DSM
           14365]
 gi|262081472|gb|ACY17441.1| response regulator receiver protein [Haliangium ochraceum DSM
           14365]
          Length = 317

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++ +D+   +++   +++  GY      +G +A E A  + PD++I D+ +  + 
Sbjct: 8   MPPRILVADDDAWILRMVTTVLKKRGYEVDTAPDGEQAYERALSNPPDLLITDVMMPNVD 67

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + KQ++E   L ++PVI +TA +   D     + G + Y+ KP         + + +
Sbjct: 68  GWTLVKQMREHPSLCDVPVIFLTALSADDDRIHGFRLGADDYLPKPFRFEELDLRVARTL 127

Query: 121 GE 122
             
Sbjct: 128 RR 129


>gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 225

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED +   +     ++  GY      +G+  L   R+  P+++I+D+ L  + G+E+
Sbjct: 6   ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVNPNLVILDLMLPVMDGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++      +P++ +TA     D+ +    G + Y+ KP S+   +  ++ ++  
Sbjct: 66  ARRIRK---TSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRR 120


>gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  ++G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  R  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|71907245|ref|YP_284832.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846866|gb|AAZ46362.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 873

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 71/118 (60%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED  +N ++  +L+   G       +G++A++L  ++  DVI+MD+Q+ E+ GL
Sbjct: 752 RRVLLVEDEPINQEVAGELLREVGLEVELAADGLQAVQLVVENDYDVILMDMQMPEMDGL 811

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+ I++    Q +P++A+TA A   D ER    G   +I KP++  +   T+ +++
Sbjct: 812 EATRAIRKLPGRQTVPILAMTANAFAEDRERCMASGMNDFIPKPVNPDVLYATLLRWL 869


>gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1274

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 74/116 (63%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDNE N+K F   +   GY  L   NG +ALELA  H+PD+I+MDIQ+  I GLE 
Sbjct: 1154 ILLAEDNEANIKTFSSYLSAKGYGILLATNGEQALELATIHQPDLILMDIQMPGIDGLEA 1213

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +QI+ D EL  IP++A+TA AM GD +R  + G   Y++KP+ L     TI++ +
Sbjct: 1214 IRQIRLDPELVNIPIVALTALAMTGDRDRCLQAGANDYLTKPVKLKQLATTIQQLL 1269


>gi|330807931|ref|YP_004352393.1| two-component Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376039|gb|AEA67389.1| Putative two-component Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 243

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L    +  +G+    T +G    +       D++I+D+ L +  G 
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTTPDGAGFRQALNDAPSDLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++      +P+I +TA + + D     + G + Y+ KP S       IK  +  
Sbjct: 66  SLCRWVRQHPRQAHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++V+D +L +K  +  +E  G       +G EA ELA Q+  D+I++D+ L E++
Sbjct: 1   MANKVLVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVMLPELN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+E S   ++P+I +TA     D+    + G + Y++KP ++      IK  I
Sbjct: 61  GFEVCQMIREKS---DVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAII 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 269

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D    +K+    +E +GY  +  ++G EALEL  +  PD++++D+ L ++ G 
Sbjct: 25  ATILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRESPDLVVLDVMLPKLDGF 84

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+ +S    +P+I ++A     +       G + Y+SKP S       I   +  
Sbjct: 85  AVCRRIRGESI---VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 141


>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
 gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
          Length = 2059

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N +L   L+E  G+      NG++A+        D+I+MD+Q+  + G E 
Sbjct: 1740 ILLAEDNVVNQRLAVRLLEKFGHKVTLAENGLQAVAACEIKHFDLILMDVQMPHMGGFEA 1799

Query: 65   TKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T QI+  E +E    P+IA+TA A+  D  +  + G + YISKPI+       I+KY+
Sbjct: 1800 TAQIRKLESNEGIHTPIIAMTAHALARDRVKCIEAGMDDYISKPINPDQLKSMIEKYL 1857



 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 13/120 (10%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEIS 60
            ++V+DN+  +K+   ++   G  +  T NG +A ++  +        + + +D Q+ + +
Sbjct: 1604 LVVDDNKNTVKVLCQMLFEFGITSDSTDNGQDAYKMMTKAAQSNRPYEFLFIDAQI-DTN 1662

Query: 61   GLEITKQIKEDSELQEIPVIAVT-AFAMKGDEERIRKG-GCEAYISKPISLSIFMETIKK 118
               I   I ED +L +  VI +      +G  E      G   Y+SKP+S S  +E ++K
Sbjct: 1663 ---IVDLISEDPKLSKTNVIMLICGGGQRGCPENASSLIG--GYLSKPVSPSEMLEILQK 1717


>gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 227

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G  AL    +   D++++D+ L E+SG
Sbjct: 1   MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++ S    +P+I VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRQRS---HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1]
 gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|212690595|ref|ZP_03298723.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855]
 gi|212666841|gb|EEB27413.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855]
          Length = 1440

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KVM+VEDN    +   +++  + Y  +   +G+ ALE   +  PD II DI +  + G+E
Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1242

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + IKE+    +IP+I ++A +   D  +  + G + YI KP S       I+  I +
Sbjct: 1243 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1301


>gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 229

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 2/125 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  ++++V+D     +     +E   G+      N  +A ++ +Q  PD++I DI + ++
Sbjct: 1   MSAQLLLVDDEPGIRESVPAYLEEVGGFTVDVASNANDAWQMLQQKTPDLVITDIMMPQV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G +  K+++ED   + +PVI +TA  M  D  +  + GC+AY+SKP      +  ++  
Sbjct: 61  DGYQFLKKLREDPRFKSLPVIFLTARGMTTDRIQGYQAGCDAYLSKPFDTDELVAIVENL 120

Query: 120 I-GEA 123
           +   A
Sbjct: 121 LERRA 125


>gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
 gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L +D +E SG+      +G   L+ A   + D+ I+D+ L  I G
Sbjct: 1   MSKILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI +QI+   + +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICRQIR---DKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|124515849|gb|EAY57358.1| putative two component transcriptional regulator, winged helix
           family [Leptospirillum rubarum]
          Length = 231

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++++ED    + L +       +    T NG+E L LAR   PD+I++D+ L  + 
Sbjct: 1   MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + +K+D     IPV+ +TA + + D     + G + YI KP +    +  IK  +
Sbjct: 61  GLSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + 
Sbjct: 1   MLPKILIVDDDPHIRELVSIFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 232

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   ++I +D+    +L    ++  GY  ++  +G  A+E+ +    D++++DI + ++
Sbjct: 1   MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+     Q +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRTK---QNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 218

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 62  KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRR 115


>gi|150003546|ref|YP_001298290.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931970|gb|ABR38668.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1378

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VED+       R L   + Y  +   NG E + +AR+  PD++I D+ +  ++G E
Sbjct: 1118 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNGFE 1176

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +KED +   IP+I +TA     +  +  + G + YI KP +  I    +K+ I
Sbjct: 1177 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1233


>gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
 gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
          Length = 222

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IV+D+     L +   E  GY+  +  +G E LE    H  D+I++D+ +    G
Sbjct: 1   MQKILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKLTNHSFDLILLDVMMPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   +I+        PVI +TA   + D+      G + YI+KP S    M  IK  + 
Sbjct: 61  FQTLSEIR---GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 232

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +   +  R  ++ +GY     ++G EAL    Q +PD+ ++D+ + ++ GL 
Sbjct: 2   KILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVMMPQLDGLG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     +  P++ +TA     D       G + Y+ KP +L   +  ++  +  A
Sbjct: 62  VCRELRSSGYDR--PILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119


>gi|237725226|ref|ZP_04555707.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229436492|gb|EEO46569.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1446

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KVM+VEDN    +   +++  + Y  +   +G+ ALE   +  PD II DI +  + G+E
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + IKE+    +IP+I ++A +   D  +  + G + YI KP S       I+  I +
Sbjct: 1249 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307


>gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 229

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D      +    +    +  +   +  EA        PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIRDMVAFALRKGEFEPIHACDAREAQTAIADRLPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++ +++   +EIP+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38]
 gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38]
          Length = 229

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M KK   +++V+D +  +++    +   GY  +   NG EA+ +A++  P +IIMD+ + 
Sbjct: 1   MKKKDIKILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKELPQLIIMDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  + I++  ELQ+  +  +TA +    +      G + YI+KPI   + +  ++
Sbjct: 61  EMDGMEACEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIAKPIKPKVLVSKVQ 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 236

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 248

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   + ++    +   GY  +   +G EALE  R  +PD++++D+ + ++ G  
Sbjct: 10  TILVVDDEASSRRILETRLSMIGYNVITACDGNEALECFRNVEPDLVVLDVMMPKLDGYG 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 70  VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|330996298|ref|ZP_08320183.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573490|gb|EGG55097.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
          Length = 230

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ ED +      R  ++  G+      +G  A  + ++   D++++D+ + ++ G
Sbjct: 6   MAKILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQEGVFDLLVLDVIMPKMDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q +   E    PVI +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 66  LEVCRQFR-LKEGYHTPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 239

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 5/122 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+DN+   ++   L+E  GY   +  +G  A+  A     D+II+D+ + ++ 
Sbjct: 11  MGSRILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAVAKAEDM--DLIILDVMMPKMD 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  +QI+E   +   P++ +TA  M  D+      G + Y++KP S +  +  +K  +
Sbjct: 69  GFKACRQIRE---VTNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|33864253|ref|NP_895813.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641033|emb|CAE22162.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 268

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++   +L    +E +G+      +G++   LA Q+ PD+I++D+ L  + GL +
Sbjct: 5   ILLIEDDQDMRELVSSHLEHNGFDVQNAEDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D     IP++ +TA A   D+      G + Y++KP  L      +K  +  
Sbjct: 65  CQRLRRDERTAGIPILMITALAGTKDKVTGFNSGADDYLTKPFDLEELQVRVKSLLRR 122


>gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 227

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+ +V+D++   ++    +E  G+   Q  +G  AL+  ++  P ++I+DI L  I G+ 
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKIQEKPPKLVILDIMLPGIDGIA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++     ++P+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 66  LCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121


>gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 227

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 65/125 (52%), Gaps = 3/125 (2%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K   ++++V+D    +++    +   GY  +   NG EA+++A++  P +II+D+ + 
Sbjct: 1   MKKKDIRILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAVKVAKKKSPHLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G+E  +Q+++  EL++  +  +TA      +      G + YI+KPI   + +  +K
Sbjct: 61  GMDGIEACEQMRKIPELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1438

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G   L   NG+E +E  R+H   D+I+MD+ + E+ G
Sbjct: 1309 RTVLVVDDDARNLYALSGILELHGINVLHAENGIEGIEALREHPGIDLILMDVMMPEMDG 1368

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T +I+E      +P+++VTA AM GD E+    G   Y++KP+     +  +++++G
Sbjct: 1369 YTATMKIREVPAHATLPIVSVTAKAMPGDREKSLAAGASDYVTKPLDADDLIACVRRWLG 1428

Query: 122  E 122
             
Sbjct: 1429 R 1429


>gi|237709630|ref|ZP_04540111.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229456266|gb|EEO61987.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1446

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KVM+VEDN    +   +++  + Y  +   +G+ ALE   +  PD II DI +  + G+E
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + IKE+    +IP+I ++A +   D  +  + G + YI KP S       I+  I +
Sbjct: 1249 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307


>gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+    ++    +    +  L+  +G++ALE A     D++I+D+ L  + G
Sbjct: 1   MARVLVVDDDPAIREVLAAYLARERFEVLEAEDGLQALEQA--PGADLVILDLMLPGMDG 58

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    ++P++ +TA   + +  R  + G + Y++KP S    +  ++  + 
Sbjct: 59  WRVAQELRRD--WPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|325274980|ref|ZP_08140980.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099887|gb|EGB97733.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 227

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120


>gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D+E  + + R  +   GY  L   NG E L++     PDV+++D+ + ++ 
Sbjct: 1   MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++++E       PV+ +TA     +  +    G + Y+ KP +L   +  ++  +
Sbjct: 61  GFEALRRLREGGST--TPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +     ++  GY      +G+  L  AR+  PD+I++D  L  IS
Sbjct: 1   MAAHILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K++++  +  ++P+I +TA     D       G + YI KP SL   +  ++  +
Sbjct: 61  GLEICKRLRQTGD--KVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D    + L     +  GY  +   +G EA++  R    DVIIMD+ + +  G
Sbjct: 1   MPKILIVDDEPNIVTLISRYAQREGYDIVTASDGREAIDKCRSEDFDVIIMDVMMPDTDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+IKE    ++IPVI ++A   + D+    + G + Y++KP S    M  IK  + 
Sbjct: 61  FTACKKIKE---FKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILS 117

Query: 122 EA 123
            +
Sbjct: 118 HS 119


>gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +H+  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ I
Sbjct: 61  GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLI 117


>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
 gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
          Length = 1670

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 68/119 (57%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              K+++VEDNELN ++ R ++E  G       NG +ALE        ++IMDIQ+ E+ G
Sbjct: 1331 SPKILLVEDNELNQQVARRMLEGMGLDVDVADNGRKALEALESEPYSLVIMDIQMPEMDG 1390

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            L  ++ I+ D   + +P++A+TA AM GD E+  + G   +++KPI        + KY+
Sbjct: 1391 LTASRIIRSDERYRNLPILAMTAHAMPGDREKSFEAGMNEHLTKPIDPEELKRALVKYL 1449



 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPD---VIIMDIQLQEISG 61
            +++E N +  +  R  +E SG   +       ALE LA     D   +I++  ++Q++  
Sbjct: 1187 LVIEGNMMAREFIRSTMEKSGITVMVDSTASSALERLAESIDVDGLGLILVSGKIQDMHV 1246

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIK 117
            LE+ ++I+   +L  +P+I ++   M     +     G + ++++P+S       ++
Sbjct: 1247 LEVVERIRNMPKLMHVPIILMSPVNMDESFRKEAALVGVDGFVTRPVSRLSLYAALQ 1303


>gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 221

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 75/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++VED+     +  ++++ SGY+  +  +G+ A+E+ R+   D+II+D+ L +I 
Sbjct: 1   MPKKILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMFREGNFDLIILDVMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S    +P+I +TA   + DE R  +   + YI+KP S+++ ++ ++  +
Sbjct: 61  GFVVCEIIRKES---SVPIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016]
 gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I +DN   +K+ R  I   G+  +   NG EAL+   Q+ P +I++DI +    
Sbjct: 1   MTKNILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFEQYNPQIILLDIMMPIFD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+        P+I +TA +   D+      G + YI KP S    +  IK   
Sbjct: 61  GMEVCKLIR---LKSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L]
 gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +  R+G EA+          I++DI +  + G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+ +V+D    +++ +  +E  G+  +   NG   L   ++ KPD++I+D+ L  IS
Sbjct: 1   MNKKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEKPDLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I++      +P++ +TA   + D+      G + Y++KP S    +  +K  +
Sbjct: 61  GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|311695852|gb|ADP98725.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 246

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+    +L  + +   GY      +G +  E       D+I++D+ L    G  +
Sbjct: 16  VLVVDDDAAIRELLEEHLTRVGYDVRTAGDGDQMRERLNSSHVDLIVLDVMLPGDDGFTL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +QI+E      +P+I +TA + + D     + G + Y++KP S       +K  +  A
Sbjct: 76  CRQIRE---YSRVPIIMLTASSDETDRVVGLELGADDYLAKPFSARELQARVKALLRRA 131


>gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED      L    +   G+   Q  +G++AL L  QH+P +II+D  L  + G
Sbjct: 1   MARVLVVEDEVAICNLICAELSAEGHTVYQANDGLQALTLVEQHQPQLIILDWMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + ++++ +     +P++ +TA   + D     + G + YISKP S+   M  ++  + 
Sbjct: 61  LSVCRRVRLNYL---MPILMLTARNEEIDRILGLEVGADDYISKPFSMRELMARVRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|206889241|ref|YP_002249148.1| two-component response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741179|gb|ACI20236.1| two-component response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 122

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/121 (38%), Positives = 83/121 (68%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++V+DNE + +L + +++  GY  ++  +G +A+  A  ++PD+I+MDI + +I G
Sbjct: 1   MKTILVVDDNEDSRELVKKILKKHGYEVIEAVDGEDAIAKALAYRPDLILMDISIPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+++KE  + ++ P+IA TA AM+GD+E+  + GC  YISKPI++  F E IK Y+ 
Sbjct: 61  YEATRRLKERPDFKDTPIIAFTAHAMRGDQEKALQAGCNGYISKPINVREFPEQIKIYLK 120

Query: 122 E 122
           E
Sbjct: 121 E 121


>gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 228

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E   ++ +  +ET+GY      +G  A E      P+++++D+ L  I G+E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++DS    +PVI +TA     D+    + G + Y+ KP      +  +K  +  
Sbjct: 67  VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122


>gi|159897248|ref|YP_001543495.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890287|gb|ABX03367.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 531

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 64/117 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ + + ++E +GY     R+G EAL +  Q  PD+I++D+ + E+ G + 
Sbjct: 8   ILIVDDQTTNVMVLQRMLERAGYATACARSGFEALTMLEQQVPDLILLDVMMPEMDGYQT 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + I+E + L  IP+I V+A     D       G + Y++KP++    +  ++  + 
Sbjct: 68  LQAIRERNHLPFIPIIFVSAKQTTADTVTGLDLGADDYVTKPVNRDELLARMRVLLR 124


>gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
 gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
          Length = 236

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQDKVG--VPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
 gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
          Length = 229

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     ++    +E  G+  ++  NG EAL L  +  PD+I++D  +  ++G+E
Sbjct: 7   TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++K  ++ + IP+I ++A + + D+ R  + G + Y+ KP S+   M  ++  +  
Sbjct: 67  ICRRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125


>gi|239942395|ref|ZP_04694332.1| putative two-component systen response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 207

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D     +  R  +   GY      +G +AL +A  + PD+I++DIQ+  + GL
Sbjct: 9   QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+        P++ +TA    GD       G + Y+ KP  L      I+  +  
Sbjct: 69  TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126


>gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCVVSGEEAISHIENQNFTFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + YI+KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRR 118


>gi|158338729|ref|YP_001519906.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158308970|gb|ABW30587.1| diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017]
          Length = 333

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D   N++L  D++E  GY  LQ  NG  AL+     +P +I++DIQ+ E+ G  
Sbjct: 35  KILLVDDQPQNLRLLTDVLEEQGYEVLQALNGNVALQAVSLDQPQLILLDIQMPEMDGYT 94

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K D   Q+IPV+ V+A     D+ +    G   YI+KP  +   +  ++  +
Sbjct: 95  VCQKLKADPSTQDIPVVFVSALDESWDKVKAFSVGGVDYITKPFKVVEVLARVQNQL 151


>gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
          Length = 244

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  ++  GY  +   +G EALE+     PD++++D  L EI G
Sbjct: 8   MSKILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+ +S     PVI VTA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 68  TEVLRQIRSNS---STPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I+ED      + R  +E +G+  L   +G E +ELAR   PD++I+D+ L  + 
Sbjct: 1   MNATILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  ++++DS   ++ ++ +TA + + D     + G + Y+ KP S    +  ++  +
Sbjct: 61  GMEVAARLRQDS---DVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300869422|ref|ZP_07114007.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria
           sp. PCC 6506]
 gi|300332552|emb|CBN59205.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria
           sp. PCC 6506]
          Length = 237

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 71/116 (61%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDNE N+      ++  GY  +  +NG EA+ LA+   P++I+MDIQ+  + GLE 
Sbjct: 119 ILLAEDNEANISTVSSYLKAKGYRIVLAKNGEEAIALAKSENPNLILMDIQMPGMDGLEA 178

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +QI+ D +L ++P+IA+TA AM  D +R    G   YISKP+ L     TI++ +
Sbjct: 179 MQQIRLDPKLVKVPIIALTALAMSSDRDRCLAAGANDYISKPVKLKQLAATIQQLL 234


>gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 242

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 81  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135


>gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99]
          Length = 236

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
 gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
          Length = 239

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VED +         +E  GY  +   +G  A+E   +H+ D+I++D+ L ++SG 
Sbjct: 6   RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+   +  ++P+I +TA     D     + G + Y+ KP S    +  ++     
Sbjct: 66  RVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRR 122


>gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
 gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
          Length = 234

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59
           +K++++VED ++        ++ +GY  +    G EA+++  ++    DV ++D+ +  +
Sbjct: 1   MKRILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ ++I+E +    I +I +TA + + D+      G + Y++KP S S  +  +   
Sbjct: 61  DGFEVCRRIREKN--SSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDAL 118

Query: 120 IGE 122
              
Sbjct: 119 HRR 121


>gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
            23134]
 gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
            23134]
          Length = 1269

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61
            K+++V+D  +N+++  + +    Y   Q  +G++AL++ ++     D+I++D+ + ++SG
Sbjct: 886  KILVVDDEPVNLQVLENHLSIQNYNITQASDGLKALKIIKESKEPFDIILLDVMMPKMSG 945

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E+ + I+E   L E+PV+ +TA     D       G   Y++KP S    +  IK ++
Sbjct: 946  YEVCRTIRERFPLVELPVLMLTAKNQPKDIVEGFDAGANDYLTKPFSKVELLSRIKTHV 1004


>gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
 gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
          Length = 237

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED     +L    +  +G+  +    G EA++LA QH PD+ ++D+ L ++ G 
Sbjct: 10  ATLLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPDMDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++E    + +P++ VTA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 70  AVTRKLRESG--RRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127


>gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis TXDOH]
 gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis Bt4]
 gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
 gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
          Length = 233

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
 gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
          Length = 234

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E    +    ++  GY  +   +G +A+ELA    PD+I++D+ L +  G+E
Sbjct: 5   KILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLMLPKKDGME 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + IP+I +TA   + D+    + G + Y++KP S    M  +K  +  
Sbjct: 65  VCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120


>gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B]
 gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B]
          Length = 1947

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 77/119 (64%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDNE+N +L  +++ T G       NG EAL+L   H+ D ++MD Q+  + G E 
Sbjct: 1614 VLLVEDNEINQELAVEILTTHGMTVQVANNGQEALDLIAAHQFDGVLMDCQMPVMDGYEA 1673

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            T+ I+ +   +++PV+A+TA AM GD+E++ + G   +I+KPI+L+   +T+ K+I  A
Sbjct: 1674 TRHIRNNPATKDLPVLAMTANAMVGDKEKVIEAGMNDHIAKPINLADLFKTMAKWISPA 1732



 Score =  107 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD----VIIMDIQLQEIS 60
            +++V+DN+   ++   ++E+ G+       G +A+E+ +    D    ++++D ++  + 
Sbjct: 1465 ILVVDDNQSAREILAAILESLGFQIKTASGGRQAVEMIKAADADEPFKLVMLDWRMPGLD 1524

Query: 61   GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G++  + I+ED+ L+  P +I +TAF  +  +E         +++KP + S  ++ I + 
Sbjct: 1525 GVQTGQLIQEDTTLKNQPKIIMITAFGREEMQEGAGGLAISGFLTKPATASSLLDEIMRA 1584

Query: 120  IGE 122
            +G 
Sbjct: 1585 MGR 1587


>gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 234

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+E   ++    +E  GY  +   +G +ALE A    PD++I+D+ +  + G+E
Sbjct: 5   TILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALECAFSFNPDLVILDMMIPGLDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++++      P+I ++  +   D+      G + Y+SKP      +  IK ++  
Sbjct: 65  VCQALRKNL---STPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRR 120


>gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis MSMB43]
          Length = 233

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D E  ++L    ++ +G   +  R+G EAL    + +P VII+D+ L +  G  
Sbjct: 33  TVLVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVMLPDTDGFT 92

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++E     + P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 93  LCRHLRERGI--QTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRR 149


>gi|265754262|ref|ZP_06089451.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263234971|gb|EEZ20526.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1446

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KVM+VEDN    +   +++  + Y  +   +G+ ALE   +  PD II DI +  + G+E
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + IKE+    +IP+I ++A +   D  +  + G + YI KP S       I+  I +
Sbjct: 1249 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307


>gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes
           10403S]
 gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL J2-003]
 gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
 gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
          Length = 236

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 567

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 67/117 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D+  N  +    +   GY   +  NG EAL +  + + D+I+MD Q+  +SG+
Sbjct: 443 AHILLVDDDVFNRTIIGAWLRRWGYRLREATNGKEALAVLEEERFDLILMDEQMPGMSGI 502

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E   +I+ D+  + IPVIAVTA AMKGD ER    G   Y+SKP S +  +  ++ +
Sbjct: 503 ETVDRIRADARWKNIPVIAVTANAMKGDRERFLAAGMNDYLSKPFSPADLLHVVRVW 559


>gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+    +L    +    Y  +   +G EAL++  + KP+++++D+ L  I G 
Sbjct: 5   QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFPEFKPNLVLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++  S+   +PVI ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCRELRASSQ---VPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|329956866|ref|ZP_08297434.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328523623|gb|EGF50715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1474

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+      ++ + +  Y  +   NG E L+ A    PD+II D+ +  + GLE+
Sbjct: 1219 ILVVEDNKELRTFLKNSL-SEHYTVITAANGKEGLQHAIDDLPDLIISDVMMPVMDGLEM 1277

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             KQIKE+S +  IP+I ++A A   D     + G + YI+KP S +     I   + +
Sbjct: 1278 VKQIKENSAICHIPIIILSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIITLLRQ 1335


>gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 234

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++VED     ++    +   G+   +  +G +AL L R  +PD++++DI L E+ G
Sbjct: 11  MALVLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIMLPEMDG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+        PVI VTA     D+    + G + Y++KP S    +  +K  + 
Sbjct: 71  LEVLRRIRSSG---HTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLR 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 230

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I+ED E    L +D +E S +      +G      A +   D+II+D+ L  + 
Sbjct: 1   MSKKILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI +Q+++    +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++
Sbjct: 61  GFEICRQVRDQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117

Query: 121 GE 122
             
Sbjct: 118 AR 119


>gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 231

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ +D+   +K+    +   G+  ++  +G EAL+LA   +PD++I+D+ + ++ G 
Sbjct: 5   RRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  +I+  S    +P++ +TA     D+    + G + Y++KP  L+  +  +   +  
Sbjct: 65  AVCGRIRAASA---VPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRR 121


>gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L]
 gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L]
          Length = 237

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I ED++    L +  +E   Y+     NG EAL+L  Q+  +++I+D+ + ++
Sbjct: 1   MKDIRILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 MRR 120


>gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus]
 gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 238

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++D+ +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122


>gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 227

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IVED++  ++L    ++++G+     ++G +AL  AR+  P  II+D+ L  +
Sbjct: 1   MSKDSILIVEDDDDIVELLAFNLQSAGFATETAKDGYDALTKARRTPPAGIILDLMLPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ K++K D +    P+I +TA   + D     + G + Y+ KP S    +  ++  
Sbjct: 61  DGFEVCKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LKR 123


>gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 409

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N+++   ++   GY      +G  A+E    H+P++I++DI +  I G E 
Sbjct: 10  ILIVDDNPNNLEVLAHILTDVGYQVSVAIDGETAIEQVEYHQPELILLDIMMPGIDGFET 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +    EIP+I +TA +   ++      G   YISKP      +  I+ ++
Sbjct: 70  CRRLKANPLTCEIPIIFLTALSDSNNKVNGLSVGAVDYISKPFQSEEVLARIRIHL 125


>gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 226

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+    ++  + +   G+     ++G  AL    +   D++I+DI L +  G
Sbjct: 1   MPRILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIMLPKFDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ ++I+E    ++IPVI VTA +   D+      G + YI+KP S       I+  + 
Sbjct: 61  MKVCRKIRE---TKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
 gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
          Length = 238

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++D+ +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122


>gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D++   +L    ++  GY   +  +G EA  +  Q    + ++D+ +   +G
Sbjct: 1   MATILVADDDQFIRELITLYLKKEGYTVFEANDGEEASSILSQQTIHLCLIDVMMPNKNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+   +L ++P++ VTA     D+ +  + G + YISKP      +  +K  + 
Sbjct: 61  WELCREIR---DLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
 gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
          Length = 239

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+    +L        GY    T +G EAL LA +  PD++I+D  ++  SG+E
Sbjct: 15  KLLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMIEGTSGIE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D     +P+I +TA   + D  R  + G + Y++KP S    +  +   +  
Sbjct: 75  VCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRR 133


>gi|4732058|gb|AAD28578.1|AF121341_2 putative response regulator CelR2 [Rhizobium leguminosarum]
          Length = 457

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  +   +G  AL +  +++ D+I++DI +  I 
Sbjct: 1   MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K   +   IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 61  GFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 78.6 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     ++      L   +   AL  A +   D++I++    +   L +
Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + +P++ +T         R    G   YI +P+  +  +      I  
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADNMVVRALDLGVNDYIIRPVDPNELVARSLTQIRR 274


>gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862]
          Length = 233

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +    + +  +   GY  +   +G EAL+L     PD++++D  L E+ G
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESEDPDLVLLDQMLPELEG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+  S+    PVI VTA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  TEVLRQIRTKSQT---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
 gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED     +    ++   G+      +G +AL+   ++  D++++D+ L  +SG
Sbjct: 1   MTRVLVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGADIVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQIRA---TSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family
           [Bacteroides xylanisolvens XB1A]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+++VED           ++  G+      +G    ++ +    D++I+DI + +I+
Sbjct: 1   MMAKILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEPFDLLILDIIMPKIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +  ++    Q  PVI +TA     D  +    G + Y+ KP S       IK  +
Sbjct: 61  GLELCRLYRQTFGYQS-PVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
 gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
          Length = 238

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++D+ +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122


>gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
 gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   K++IV+D +    L    +   GY  L+  NG+EALEL + +   +II+DI + ++
Sbjct: 1   MSAEKILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNVHLIILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E   +I+E+   + +P+I ++A +   D+      G + YI+KP +    +  +K  
Sbjct: 61  DGIEACMKIREE---KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + 
Sbjct: 1   MLPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1130

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            +++V+D  +N+++  + ++ + Y   Q  +G EAL      H  D+I++DI +  ++G 
Sbjct: 720 HILVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDIMMPNMTGY 779

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+  QI+E    Q +PV+ +TA     D     + G   Y++KP +    +  I+ +I
Sbjct: 780 EVCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHI 837


>gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 227

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+ +V+D++   ++    +E  G+   Q  +G  AL+  ++  P ++I+DI L  I G+ 
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDGIA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++     ++P+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 66  LCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121


>gi|253732135|ref|ZP_04866300.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724090|gb|EES92819.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 188

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  NG EA ELA ++    I++D+ L E+ 
Sbjct: 1   MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++  +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|206602093|gb|EDZ38575.1| Putative two component transcriptional regulator, winged helix
           family [Leptospirillum sp. Group II '5-way CG']
          Length = 231

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++++ED    + L +       +    T NG+E L LAR   PD+I++D+ L  + 
Sbjct: 1   MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I + +K+D     IPV+ +TA + + D     + G + YI KP +    +  IK  +
Sbjct: 61  GLSINRSLKKDPLTSGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|115525386|ref|YP_782297.1| response regulator PleD [Rhodopseudomonas palustris BisA53]
 gi|115519333|gb|ABJ07317.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisA53]
          Length = 457

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N KL    +    +  L   +G +ALE+  + + D+I++D+ + ++ 
Sbjct: 1   MSARILVVDDIPANAKLLEARLSAEYFDVLTASSGAQALEICARSECDIILLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K + +   IPV+ VTA     D  R  + G + +++KP++  + +  ++   
Sbjct: 61  GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVADVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    ++ +  +      +  EAL  A     D++I+ + L++  GL 
Sbjct: 157 RILLVDDRPSSFERMAQVLSSE-HTVDVEPDPAEALFHAADGDYDLLIVSLGLEDFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++A+ A A       R  + G   Y+ +P+  +  + 
Sbjct: 216 LCSQARSLERTRHLPILAI-ADADNNTRLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|294645151|ref|ZP_06722874.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294807005|ref|ZP_06765824.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|292639482|gb|EFF57777.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294445704|gb|EFG14352.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1397

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+++EDNE  ++L   L++   Y      NG E + +      D+I+ D+ + E+ G+E 
Sbjct: 1143 VLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENEDIDLIVSDVMMPEMDGIEF 1201

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K + E+  IPVI +TA   + D     + G +A+ISKP +L +    I+  +
Sbjct: 1202 CKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLL 1257


>gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 227

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    +++    +  + +   +  NG  AL       PD++++D+ L +  GL 
Sbjct: 2   KILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFESINPDLVVLDLMLPDTDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E S    IP+I +TA + + D     + G + Y+ KP S    +  I+  +  +
Sbjct: 62  VCRKIRESS---NIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRRS 118


>gi|237715359|ref|ZP_04545840.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405201|ref|ZP_06081751.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229444668|gb|EEO50459.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262356076|gb|EEZ05166.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1384

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+++EDNE  ++L   L++   Y      NG E + +      D+I+ D+ + E+ G+E 
Sbjct: 1130 VLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENEDIDLIVSDVMMPEMDGIEF 1188

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K + E+  IPVI +TA   + D     + G +A+ISKP +L +    I+  +
Sbjct: 1189 CKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLL 1244


>gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes
           Clip81459]
 gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-064]
 gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-175]
 gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816]
 gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220]
          Length = 236

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|104783427|ref|YP_609925.1| response regulator ColR [Pseudomonas entomophila L48]
 gi|95112414|emb|CAK17141.1| response regulator ColR [Pseudomonas entomophila L48]
          Length = 227

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120


>gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL S4-171]
          Length = 240

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK+++++    ++P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 67  VTKKLRQNKV--DVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123


>gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
          Length = 234

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +   GY       G E LEL  +   D++++D+ L  + G
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E S    +P+I +TA + + D+    + G + YI+KP S    +  ++  + 
Sbjct: 61  TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|241204117|ref|YP_002975213.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858007|gb|ACS55674.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 457

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  +   +G  AL +  +++ D+I++DI +  I 
Sbjct: 1   MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K   +   IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 61  GFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 80.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     ++      L   +   AL  A +   D++I++    +   L +
Sbjct: 158 VLLVDGRANSQERIVKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + +P++ +T         R    G   YI +P+  +  +      I  
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRR 274


>gi|294777639|ref|ZP_06743090.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
 gi|294448707|gb|EFG17256.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
          Length = 1374

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VED+       R L   + Y  +   NG E + +AR+  PD++I D+ +  ++G E
Sbjct: 1114 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNGFE 1172

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +KED +   IP+I +TA     +  +  + G + YI KP +  I    +K+ I
Sbjct: 1173 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1229


>gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 237

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L +  +   GY      +G EAL++ R  KPD++I+D+ +  + G  
Sbjct: 12  RVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMPGMDGFT 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E  E  ++PV+ +TA     D  +  + G + Y++KP SL+  +  ++  +  +
Sbjct: 72  LLRRLRE--ERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRRS 129


>gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + 
Sbjct: 1   MLPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|153868803|ref|ZP_01998544.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074620|gb|EDN71457.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 326

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M KK  ++IV+DN  N+ +   +I  +GY+     +G+EAL   ++  P +I++DI + +
Sbjct: 1   MKKKPTILIVDDNPTNLGVLGSIIAENGYLPGFATSGIEALAYLKEKHPKLILLDIMMPD 60

Query: 59  ISGLEITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + G E+ +++++++ L   IP+I +TA   K D     + G   Y++KP + +  +  I 
Sbjct: 61  MDGFEVCRRLRQNATLAANIPIIFLTAKTEKEDVITGLELGAVDYVTKPFNKNELLTRIN 120

Query: 118 KYI 120
            ++
Sbjct: 121 THL 123


>gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
 gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
          Length = 235

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++V+D E  +KL    +   G+      NG +AL LA     D I++DI L ++ 
Sbjct: 1   MTKQVLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++      + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GMEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 224

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  + V+IV+D E    L    +E +G+  L+  +G EAL L  QH  D +++D+ + + 
Sbjct: 1   MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  +  +I+E S   ++P++ +TA   + D+ +  K G + YI KP S    +  ++  
Sbjct: 61  DGFAVCARIREQS---DVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
 gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
          Length = 233

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +    + +   E  GY     ++G+EAL   + +   +I++DI + +++
Sbjct: 1   MDIKILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTYSLILLDIMMPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  K+I++  +    PVI +TA   + D+    + G + Y+ KP S+   +  +K  +
Sbjct: 61  GFDTLKEIRKSHKT---PVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|265755299|ref|ZP_06090069.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263234441|gb|EEZ20031.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1344

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN    +  R       Y  +  ++G E  ELA+   P++I+ DI +  + G+E+
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQVRIPNIIVSDIMMPVMDGIEL 1152

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K+IKED     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208


>gi|237724088|ref|ZP_04554569.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229437548|gb|EEO47625.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1344

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN    +  R       Y  +  ++G E  ELA+   P++I+ DI +  + G+E+
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQVRIPNIIVSDIMMPVMDGIEL 1152

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K+IKED     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208


>gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   ++I +D+    +L    ++  GY  ++  +G  A+E+ +    D++++DI + ++
Sbjct: 1   MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+     Q +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRTK---QNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +  +GY  +  R+G EA+          +++DI +  + G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 236

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  +G+      NG EAL+ A + +PD+ ++D+ L ++ G 
Sbjct: 8   ARLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++  S  +  PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 68  TVTRRLR--SAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125


>gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++  ++  +  +   GY    + NG EAL      K D+I+MDI + +I 
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K+I+    L  IP+I +TA   + D+ +    GC+ YI+KP  L      +   +
Sbjct: 61  GFEAIKRIR---RLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 233

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++  ++  +  +   GY    + NG EAL+  R  + ++I+MDI + ++ 
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K+I+    L  IP+I +TA   + D+ +    GC+ YI+KP  L      +   +
Sbjct: 61  GFEAIKRIR---RLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|186683964|ref|YP_001867160.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186466416|gb|ACC82217.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 440

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ +  D++   G+  +   +G  AL+ A +  PD+I++D+ +  I G E 
Sbjct: 18  ILVVDDTTTNLGIVFDILTNVGFKVVTENDGSRALKQAEEQLPDLILLDVMMPGIDGFET 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++KE+S   +IPVI +TA +    + R    G   YI+KP +    +  IK ++
Sbjct: 78  CKRLKENSATYDIPVIFMTANSDTNSKVRGLNIGAVDYITKPFNEEELLARIKTHL 133


>gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 226

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D    ++  +  +   GY     +NG EAL+ A QH+P +I++D+ +  + 
Sbjct: 5   MSHRILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQHRPHLILLDMMMPVMD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  + I+ED +L++  V+ ++A   +  +      G + Y++KPI + + +  ++  +
Sbjct: 65  GAQTCRAIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAIL 124

Query: 121 GE 122
             
Sbjct: 125 KR 126


>gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 228

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDN+   +  +  +E  G+I     +G E L+LA  +  D II+DI L  +SG+E
Sbjct: 2   KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++ D E  ++P++ +TA     +       G + Y+ KP  L   +  ++  I  
Sbjct: 62  ICRFLR-DEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRR 119


>gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
 gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
          Length = 240

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D +  ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 14  ARILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 74  GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131

Query: 123 A 123
           A
Sbjct: 132 A 132


>gi|170077528|ref|YP_001734166.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC
           7002]
 gi|169885197|gb|ACA98910.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC
           7002]
          Length = 376

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+     L    ++  GY      +G   L+LA   +PD+II D  + E++G
Sbjct: 1   MPQILVIDDDLAMRVLLERTLKRKGYQVTTASDGKTGLDLAIATRPDLIISDWMMPEMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + +K+  +L     I ++A     D+      G + ++ KPIS       ++  + 
Sbjct: 61  IEVCQAVKQHPDLSTTFFILLSALDAVEDKVMGLDAGADDFLCKPISSHELEARVRSGLR 120


>gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
 gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
          Length = 1387

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV+IV+D+  N+      +E  G   L   NG + + L  +    D+++MD+ +  + G
Sbjct: 1264 RKVLIVDDDVRNIFALTSALEREGMQVLYAENGSDGIALLERTPGIDMVLMDVMMPGMDG 1323

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T  I+     +E+P++A+TA AM+GD E+  + G   YI+KP+     +  ++ ++ 
Sbjct: 1324 YEATAAIRRQVRFKELPIVALTAKAMRGDREKCLEAGASDYITKPVDTEQLLSLLRVWLS 1383

Query: 122  E 122
             
Sbjct: 1384 R 1384



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+    ++  DL  T G+ A+        L   R  +P  +++DI L  + G  + 
Sbjct: 999  LIIEDDANFARILGDLARTHGFKAVVALGSETGLAAVRDLQPHAVLLDIHLPGMDGWTVL 1058

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
             ++K D E + IPV  ++      D  +R  + G  A + KP+       
Sbjct: 1059 DRLKHDPETRHIPVHLLS----VDDAGQRGLQSGAVACLKKPVDSEQMAA 1104



 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 47/103 (45%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++++ED+E       +LI      +       EAL L +    D +++D+ L +  G 
Sbjct: 1118 KNLLVIEDDEAQRTSIVELIGGGDVRSQAVATAQEALALLQSEPFDCVVLDLGLPDADGQ 1177

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
             +  QIK  ++   +PVI  T   +   +ER  K   EA I K
Sbjct: 1178 ALLGQIKGSADPWNLPVIVYTGRDLTPQQERDLKRRVEAVIVK 1220


>gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L]
 gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1]
 gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI]
 gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L]
 gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1]
 gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 238

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++D+ +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 66  VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRS 122


>gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 230

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|255037318|ref|YP_003087939.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254950074|gb|ACT94774.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 228

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++ VED+       +D +E   Y  +   +G EAL+   +   D+ ++DI L  + 
Sbjct: 1   MKKRILYVEDDPNLAFATKDNLEQYDYEVVHATDGAEALDFFGKEHFDICVLDIMLPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+      ++P++ ++A +M+ D+ +  K G + YI+KP S+      I  ++
Sbjct: 61  GFTLAEKIRASD--SQVPILFLSARSMQDDKIKGLKLGADDYITKPFSIEELKLRIDVFL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|149197475|ref|ZP_01874526.1| response regulator [Lentisphaera araneosa HTCC2155]
 gi|149139493|gb|EDM27895.1| response regulator [Lentisphaera araneosa HTCC2155]
          Length = 223

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED        R  ++  G+         +A E   ++  ++II+DI L + +G
Sbjct: 1   MPKILIVEDEPSIADNIRMALDLEGFQHRWASTLAQADEYLAENTINLIILDIGLPDGNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  ++++     Q IPVI +TA + + D     + G + Y++KP S       IK  + 
Sbjct: 61  FDFCRKLRAS---QNIPVIMLTARSDEVDRIVGLEIGADDYVTKPFSPRELSARIKSVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L +  +  +GY A     G  AL+  R  +PD+I++DI L  + G EI
Sbjct: 18  ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK-PISLSIFMETIKKYIGE 122
            +Q++      ++PV+ +TA A + D  R  + G + YI K P S    +  +K  +  
Sbjct: 78  CRQLR---TFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRR 133


>gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 227

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED +   +     ++  GY      +G+  L   R+  P+++++D+ L  + G+E+
Sbjct: 9   ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVLDLMLPVMDGIEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++      +P++ +TA     D+      G + Y+ KP S+   +  I+ ++  
Sbjct: 69  ARRIRK---TSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123


>gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D    +++ +  +E  G+  +   NG   L+  ++ KP+++I+D+ L  IS
Sbjct: 1   MDKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I++      +P++ +TA   + D+      G + Y++KP S    +  +K  +
Sbjct: 61  GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D     ++ +  +E  GY  +   NG EA+E  ++  P +II+D+ L +ISG 
Sbjct: 6   KKILVVDDEVKISEVIKSYLEHDGYKVVTALNGKEAMESYKEFNPHLIILDLMLPDISGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI K+I+++S    +P+I +TA     +       G + Y+ KP S    +  +   +  
Sbjct: 66  EICKRIRKNS---SVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLRR 122


>gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
 gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
          Length = 223

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D +   +L    +   G+  L+  NG EAL++      D+ I+D+ +  + 
Sbjct: 1   MKPRVLVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENEYVDLGIIDVMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + +KE    ++IPVI +TA     D+ R    G + Y+ KP   +  M  +K  +
Sbjct: 61  GFELVENLKE---FKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|186681898|ref|YP_001865094.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464350|gb|ACC80151.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 374

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D   N+ L + ++E+ GY      +G++AL    +  PD+I++D+ +  + G E
Sbjct: 11  RILAVDDTRDNLILVQAILESEGYEIDLVSDGIKALRQVEKSPPDLILLDVMMPGMDGYE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+ +  +  IP++ +TAF  +         G + +I KP      +  ++  + 
Sbjct: 71  VTRRIRNNPAISYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLR 127


>gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1299

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/116 (42%), Positives = 81/116 (69%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++I EDNE N+K   D + + GY  +  +NG EA+  A+++ P +I+MDIQ+ ++ G+E 
Sbjct: 1172 ILIAEDNETNIKTIWDYLLSKGYRLILAKNGWEAISQAKEYHPQLIMMDIQMPDMDGIEA 1231

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K+I+++ + +EIP+IAVTA AM GD+E+    G + YISKP+SL   + TI++Y+
Sbjct: 1232 IKRIRDNQKTREIPIIAVTALAMPGDKEKCLGAGADEYISKPVSLKNLVSTIQQYV 1287



 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+I+ED+    ++    I   G   L    G  ALE   Q  P VII+D+QL ++SG ++
Sbjct: 1031 VLIIEDSITAAEVISRYIREIGLQTLTYPEGEGALEQVIQVNPGVIILDLQLPKVSGWKV 1090

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              Q+K   + Q IPV+ ++   +  +  +  + G   Y+ KP+S  +   TI K +G 
Sbjct: 1091 LAQLKAHPQTQHIPVMILS---VVDERSQALEMGASEYLVKPVSRQLLRSTISKILGR 1145


>gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED     +L RD +E S +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|120434408|ref|YP_860117.1| two-component system sensor histidine kinase/response regulator
            hybrid [Gramella forsetii KT0803]
 gi|117576558|emb|CAL65027.1| two-component system sensor histidine kinase/response regulator
            hybrid [Gramella forsetii KT0803]
          Length = 1352

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN+   K    L++      ++  NG EALE   Q++PD+II DI +  + G+ +
Sbjct: 1108 ILIVEDNKEIRKYISGLLKPY-CRVIEVENGKEALEEITQNQPDLIISDIMMPIMDGVSL 1166

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+++K  +E   IPVI +TA A         + G +AYI+KP +  + M  IK  + 
Sbjct: 1167 TRKLKTSTETSHIPVILLTARATSIQRMEGYETGADAYITKPFNEEMLMIRIKNLLR 1223


>gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 232

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E   +     +  +GY+  +  +G EAL+  +   PD++++DI L  I G E
Sbjct: 7   KILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLPGIDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I     + E  VI +TA     D+    + G + YI KP +       IK  +  
Sbjct: 67  VCQHICA--TMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRR 123


>gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  + V+IV+D E    L    +E +G+  L+  +G EAL +  +   D I++D+ +   
Sbjct: 1   MSERTVLIVDDEEEMRLLVSMYLENAGFCCLEAGDGDEALTVLARRSVDAILLDVMMPNQ 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  +  +I+E S   ++P++ +TA   + D+ +  K G + YI KP S    +  ++  
Sbjct: 61  DGFSVCARIREQS---DVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|118590176|ref|ZP_01547579.1| Response regulator receiver [Stappia aggregata IAM 12614]
 gi|118437148|gb|EAV43786.1| Response regulator receiver [Stappia aggregata IAM 12614]
          Length = 123

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 89/123 (72%), Positives = 107/123 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  LQTR G+EAL+LAR+H PD+I+MDIQL E+S
Sbjct: 1   MAKSVLIVEDNELNMKLFHDLLEAHGYNTLQTRTGIEALQLAREHHPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IKED ++  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS++ F+ET++ Y+
Sbjct: 61  GLEVTKWIKEDEDIASIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVAKFLETVRAYL 120

Query: 121 GEA 123
           GEA
Sbjct: 121 GEA 123


>gi|186685939|ref|YP_001869135.1| response regulator receiver modulated PAS/PAC sensor protein
           [Nostoc punctiforme PCC 73102]
 gi|186468391|gb|ACC84192.1| response regulator receiver modulated PAS/PAC sensor protein
           [Nostoc punctiforme PCC 73102]
          Length = 294

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   GY   +  NG  AL+ A+   PD+I++DI + E++G E+
Sbjct: 37  ILVVDDTPDNLRLLSAMLTQLGYEIRRVINGPTALKTAQAAPPDLILLDIMMPEMNGYEV 96

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K     ++IPVI ++A     D+ +    G   YI+KP S       ++  +
Sbjct: 97  CQHLKASEITRDIPVIFISALDEVFDKVKAFAVGGVDYITKPFSEEEVFARVENNL 152


>gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IV+D     +  +  +   GY+     +G++ALE    + P++I++D+ +  + GL
Sbjct: 11  ARILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGAYDPELIVLDVLMPRMDGL 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++++       +PV+ +TA    GD       G + Y+ KP  L   +  I+  +  
Sbjct: 71  TAARRLRATGVT--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRR 128

Query: 123 A 123
           +
Sbjct: 129 S 129


>gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 227

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED +    +    +   G+      +G+EAL++ +  KPD+I++D+ L  +SG E+
Sbjct: 5   ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K+I++ +     P+I +TA   + D+    + G + YI+KP S       IK  +  +
Sbjct: 65  MKKIRQKN---NTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRS 120


>gi|315919295|ref|ZP_07915535.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313693170|gb|EFS30005.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1347

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VEDNE  + L R ++    Y  L  +NG+EALE+ ++++ D+I+ D+ + E+ GLE
Sbjct: 1096 RLLLVEDNEELLYLMRRILSKHYY-VLTAKNGIEALEVMKEYEADIIVSDVMMPEMDGLE 1154

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +K + +   IP+I +TA     D       G  AYISKP  L +    I  ++ E
Sbjct: 1155 LCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAE 1213


>gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 233

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+E   +L    +    Y      +G  AL      KP++I++D+ L  I G 
Sbjct: 5   QRILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I++++    +P+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 65  QVCREIRKNN---NVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRR 121


>gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 1284

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 70/118 (59%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +V++VEDNE+N ++   L++ +G       NG  ALEL      D+++MD+Q+  + G 
Sbjct: 927  ARVLLVEDNEINREVATHLLQQAGITPDTAENGAIALELLAVQDYDLVLMDMQMPVMDGF 986

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+ I+ +  L  +PV+A+TA A+  D  R    G + +I+KPIS + F  T+ +++
Sbjct: 987  EATRHIRANPRLASMPVVAMTANALPEDRNRCLAAGMDDHIAKPISPATFFTTLHRWL 1044



 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
           +++++V+D+    ++   ++   G+ A +  +G +AL   +           + +D ++ 
Sbjct: 778 RRLLVVDDHGYARQVIGSMLRGFGFRADEVESGEKALSAIQHADAIADPYHAVFIDWRMP 837

Query: 58  EISGLEITKQIKEDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + G++  +++   S   + P  + +TA   +       + G E  + KP+S S+  +  
Sbjct: 838 GLDGIQTVRKLAAMSLQSQRPRPLMITANGREEVVREGERNGFETTLHKPVSPSVLFDAT 897

Query: 117 KKYI 120
            + +
Sbjct: 898 MRVL 901


>gi|29345677|ref|NP_809180.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337569|gb|AAO75374.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1370

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   ++    Y  L  ++G+EAL + + ++ D+II D+ + E+ GLE
Sbjct: 1123 HLLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALNVIKDNEIDIIISDVMMPEMDGLE 1181

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +K + E   IP+I +TA     D       G + YISKP  L I    I  +I
Sbjct: 1182 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFI 1238


>gi|54302690|ref|YP_132683.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9]
 gi|46916114|emb|CAG22883.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9]
          Length = 617

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 67/122 (54%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED+  N  + + ++  +G+  +   NG EA+        D+I+MD+Q+ E++G 
Sbjct: 489 ATILLVEDSPSNQMIAKAILAKNGFNVVTANNGKEAVAALENTNYDLILMDLQMPEMNGF 548

Query: 63  EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E    I+   +   +IP+IA+TA   + D+ +    G + +++KPI+    +E +  ++G
Sbjct: 549 EACTCIRNLHNNKSDIPIIAMTANVSQQDQVQCFSVGMDDFLTKPINKIKMLEVLHHWLG 608

Query: 122 EA 123
            +
Sbjct: 609 RS 610


>gi|159902683|ref|YP_001550027.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887859|gb|ABX08073.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 258

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED++   +L    +E  G+   +  +G+    LA Q+ PD+I++D+ L ++ 
Sbjct: 1   MKPSILLIEDDKDMRELVAGHLEHCGFDVQRAEDGIRGQALAMQYTPDLILLDLMLPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D     IP++ +TA     D+      G + Y++KP  L      +K  +
Sbjct: 61  GLTLCQRLRRDERTAGIPILMLTALGGLKDKLTGFNSGADDYLTKPFDLEELQVRVKALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
 gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
          Length = 221

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+VED      +    +E  G+      NG EAL L  +  PD+I++D  L  +SG+E+ 
Sbjct: 1   MLVEDEPAQRDILTYNLEADGFEVAAAENGEEALLLVDEVSPDIIVLDWMLPNVSGIEVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +Q+K  S+ + +P+I ++A + + D  R  + G + Y+ KP S++  M  ++  +  
Sbjct: 61  RQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRR 117


>gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 229

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I+ED     +L RD +E SG+    + +G E LE A     D++++D+ L  + G
Sbjct: 1   MGKVLIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDYDLVLLDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++I+     +EIP++ V+A     D+ R    G + Y++KP S S  +  +K +I 
Sbjct: 61  YEICRRIRA---TKEIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHIN 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|253567663|ref|ZP_04845074.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251841736|gb|EES69816.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1348

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   ++    Y  L  ++G+EAL + + ++ D+II D+ + E+ GLE
Sbjct: 1101 HLLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALNVIKDNEIDIIISDVMMPEMDGLE 1159

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +K + E   IP+I +TA     D       G + YISKP  L I    I  +I
Sbjct: 1160 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFI 1216


>gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR
 gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 220

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +   +     +E   Y      +G   LE A  +  D+I++D+ L  I+G
Sbjct: 1   MTKILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +QI+++   Q  P+I +TA +   D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LEICRQIRQN---QTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 241

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  +G EA ELA ++    I++D+ L E+ 
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E++ +++E    ++ P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GIEMSSKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IVED +    +    +   GY      NG + LE      P +I++D+ L    
Sbjct: 1   MSYRVLIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKFASFSPHIIVLDLMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+  S    +P++ +TA   + D+    + G + Y++KP      +  IK  +
Sbjct: 61  GFSVCKEIRSQS---SVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 224

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED      L RD +    +   +  NG E L +    K D++I+DI +  + 
Sbjct: 1   MKKSILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQKIDLVILDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + ++++E   +  +PVI +TA + + D+ +    G + YI+KP S  + +  +K  +
Sbjct: 61  GMTMLEKLRE---VSTVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 63/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED     +L    +E  G+  L   +G+  LE AR++ PD+I++D+ L  ++G
Sbjct: 1   MHTILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAARKNPPDLILLDLMLPGMAG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K +K + +   IPVI +TA   + D     + G + YI KP S    M  +K  + 
Sbjct: 61  TEICKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 256

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +D     +L R  +E  G I  +   G + LE   Q K D++I+D+ + +  G  
Sbjct: 34  RVLVADDEAGLRQLVRLYLEKEGMIVGEAATGRQTLERLHQDKYDLLILDLMMPDGDGWT 93

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ +    ++P+I +TA   + D     + G + Y++KP S    +  +K  +  A
Sbjct: 94  VCREVRRE---MDLPIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRRA 150


>gi|307293714|ref|ZP_07573558.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
 gi|306879865|gb|EFN11082.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
          Length = 722

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V+IV+DN  N+ +  D +E +G      + G EAL+ A+  +PD+I++D+ +  I G 
Sbjct: 13  RTVLIVDDNPANLGVIVDHLEDAGLHVSVAQGGEEALKRAQFIQPDLILLDVMMPGIDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  +++K +   +EIPVI +TA     D+      G   Y+SKP  +   +  +  ++
Sbjct: 73  ETCRRLKANEATREIPVIFMTALDDIHDKVAAFAAGGVDYVSKPFQVEELLARVITHL 130


>gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 227

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E   +    ++E  G+      +G  AL    +H  D++++D+ L  +SG
Sbjct: 1   MTRLLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGADLVLLDVMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +++ S    +PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRALRQKS---SVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q + D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 223

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++VED+    ++  ++++ SGYI     +G+  +E+  ++K D+II+DI L +I 
Sbjct: 1   MEKKILVVEDDFDIQEIISEVLKNSGYIVEVASDGLSGIEMFEKYKFDLIILDIMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I++ S   ++P+I +TA   + DE +  +   + YI+KP S+++ ++ ++  +
Sbjct: 61  GFVVCEIIRKKS---DVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 226

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+    ++   ++   G+  +   +G  A+E A + +PD+I++D+ L  ++
Sbjct: 1   MPQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAEREQPDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I + I++DS    +P+I +TA     D     + G + Y++KP      +  I+  +
Sbjct: 61  GIDICRAIRQDSA---VPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
 gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
          Length = 225

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +  +GY  +  R+G EA+          +++DI +  + G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
 gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes]
 gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
          Length = 240

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 67  VTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123


>gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 229

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 233

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E   +L R  +E +G+   +  +G  ALE+A  +   VI++D+ L E+ G E
Sbjct: 5   KILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLMLPELDGRE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q+++    ++ PVI +TA   + +     + G + Y+ KP S    +  +K  I  
Sbjct: 65  VCAQLRKQ---KDTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKR 120


>gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|167751876|ref|ZP_02424003.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
 gi|167660117|gb|EDS04247.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
          Length = 217

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D +  ++  R  +  +GY     RNG E L+ A  H+P +I++D+ +  + 
Sbjct: 1   MSHRILLIDDEDDILEFIRYNLTKAGYEVYTARNGAEGLQQAAAHRPHLILLDVMMPTMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  + ++ D  L+E  V+ ++A   +  +      G + YISKPI   + +  I+  +
Sbjct: 61  GIETCRALRCDPALKETMVVFLSALGEEEQQLAGFGAGADDYISKPIKPKLLISRIQAIL 120

Query: 121 GE 122
             
Sbjct: 121 KR 122


>gi|332705093|ref|ZP_08425175.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332356043|gb|EGJ35501.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 428

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+DN  N+K+  + I  SG+  L   +G  A++ +    PD+I++D+ +  + G 
Sbjct: 9   ATILIVDDNPTNLKVLSEAIANSGWEILVATDGETAIDQSEYATPDLILLDVIMPVMDGF 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  +++K +    EIPVI +TA     D+ +    G   YI+KP      +  +K ++
Sbjct: 69  ETCRRLKSNPATNEIPVIFMTALNDTVDKIKGLSLGAVDYITKPFQTEEVLARLKVHL 126


>gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E   +L +D +E S +      +G + L+ A     D+ I+D+ L  I G
Sbjct: 1   MSRILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+E   ++ +P++ VTA   + D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FELCKRIRE---VKNVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|222148304|ref|YP_002549261.1| response regulator PleD [Agrobacterium vitis S4]
 gi|221735292|gb|ACM36255.1| two component response regulator [Agrobacterium vitis S4]
          Length = 457

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  L   +G++AL++  + + DV+++D+ +  I 
Sbjct: 2   MTARILVVDDVPANVKLLEARLLAEYFEVLTAEDGLKALDICDRTQVDVVLLDVMMPGID 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K       IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 62  GFEVCERLKSSPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLISRVKSLV 121

Query: 121 G 121
            
Sbjct: 122 R 122



 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     ++      +   +   AL  A +   D++I++  L++   L +
Sbjct: 159 VLLVDSRASSQERIIKALKPV-ADVVAMSDAQAALFEAAESNFDLVIVNGTLEDYDPLRL 217

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + IP++ +     +    R    G   YI +P+  +  +      +  
Sbjct: 218 CSQLRSLDRTRFIPILLIADQGEEYLIVRALDLGVNDYIVRPVDTNELLARTLTQLRR 275


>gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 228

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++    L    +E  G    Q  N +EAL    +   D+II+DI + E+ G+E 
Sbjct: 5   ILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLEEQAFDLIILDIMMPEMDGIEA 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+E+   Q +P+I ++A +   D+ +    G + YISKP +    +  +K ++  
Sbjct: 65  CMKIREE---QHMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRR 119


>gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 235

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 3   MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 63  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122

Query: 121 GE 122
             
Sbjct: 123 RR 124


>gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 235

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D E  ++L    +   G+      +G +AL LA     D I++DI L ++ 
Sbjct: 1   MTKQILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++      + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKRLRAKGI--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
 gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED     +L RD +E S +      +G   L+ A Q   D+II+DI L +++G
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 233

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSSILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus
            degradans 2-40]
 gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 1526

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             ++IV+D  +N K+  + +    Y   + R+GMEA+   R     D+I++DI + ++SG 
Sbjct: 1145 HILIVDDEPVNRKVLANYLSLKYYTVHEVRSGMEAITYVRNGPKVDLILLDIMMPKMSGY 1204

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  KQ+++     E+P+I +TA +   D       G   +I+KPI+    +  +  ++
Sbjct: 1205 EACKQLRQQYSANELPIILLTARSQVSDLVTGFNSGANDFITKPIAKEELLARVHTHL 1262


>gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
 gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
          Length = 229

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   K+++VED+    +L     +  GY    T +G EA+ LA +  PD+II+D  ++  
Sbjct: 1   MSAAKLLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAMVLASEDVPDLIILDWMIEGT 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ ++++ D E   +P+I +TA   + D  R  + G + Y++KP S    +  +   
Sbjct: 61  SGIEVCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 MRR 123


>gi|148546293|ref|YP_001266395.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510351|gb|ABQ77211.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 260

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L +  +  SG+      +G            D++I+D+ L +  G 
Sbjct: 25  KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 84

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++      +P+I +TA + + D     + G + Y+ KP S       IK  +  
Sbjct: 85  SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 144

Query: 123 A 123
           +
Sbjct: 145 S 145


>gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
 gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
          Length = 229

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 60/117 (51%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED+    +L    +E  GY      +G  ALE  RQ +PD++++D  L  ISGLE+ 
Sbjct: 7   LVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEVRQKRPDLLLLDWMLPGISGLEVC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +Q++   +   +P++ ++A   + D  R    G + Y+ KP S+      +K  +  
Sbjct: 67  RQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123


>gi|229077964|ref|ZP_04210573.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228705302|gb|EEL57679.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 225

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +   +  R  +  +GY  L   +G+EA+E  R   P+++I+D+ +  + GLE
Sbjct: 2   KILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVMMPNMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ +   +   ++ +TA     D       G + Y+ KP +L   +  ++  +  A
Sbjct: 62  VCRTLRSEGWDRS--ILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119


>gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 259

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++VED+    ++    +  +G+      +G + L   R    D+I++D+ L  + 
Sbjct: 34  MDGRVLVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLLPGLD 93

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++I+  +    +P++ +TA     D     + G + Y+ KP  L   +  ++  +
Sbjct: 94  GLQVCREIRRSNA---VPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLL 150

Query: 121 GEA 123
             A
Sbjct: 151 RRA 153


>gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 235

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D E  ++L    +   G+      +G +AL LA     D I++DI L  + 
Sbjct: 1   MTKQILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+++  +   + P++ V+A + + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GIEVCKRLRAKAI--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|255691944|ref|ZP_05415619.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260622353|gb|EEX45224.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1348

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   ++    Y  L  +NG+EAL++ + ++ D+II D+ + E+ GLE
Sbjct: 1101 HLLLVEDNEELLYLMEKILSRQ-YHVLVAKNGLEALDIIKDNEIDIIISDVMMPEMDGLE 1159

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + IK + E   IPVI +TA     D       G + YISKP  L I    I  +I
Sbjct: 1160 LCRNIKSNLETSHIPVILLTAKNTAEDRIECYNAGADGYISKPFELKILEARINNFI 1216


>gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    L    +  SGY  ++  +G EAL++ ++    ++I+DI + ++ 
Sbjct: 1   MNNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++E      IP++ ++A +   D+ +    G + Y++KP +       +K  I
Sbjct: 61  GIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2476

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
             KKV++V+D+  N+     ++E  G   +   NG  A+E+  QH+  D+++MD+ + E+ 
Sbjct: 2355 SKKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMD 2414

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G E  + I++D +   +P+IAVTA A+K D E+    G   Y+ KP+     +E I+
Sbjct: 2415 GYETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2471



 Score = 98.3 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++ED+    ++   +    G+ AL    G   L +A + +P  I +DIQL  + G  + 
Sbjct: 2090 LLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMANEFQPHAITLDIQLPVVDGWSVL 2149

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKYIGE 122
             ++K     + IPV  ++      D+ +    G   Y++KP+S   L      +  ++  
Sbjct: 2150 DRLKRSPRTRHIPVHVIS----VMDKHQGNSQGAFGYLTKPVSKEGLERVFNQLASFLER 2205



 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQT-RNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++VED+++       L+   G + +     G E L+     + D +++D+ L +  G
Sbjct: 2208 RRLLLVEDDDVQRDSLVKLLSEGGDVVVTAVATGEEVLQSLETGEFDCVVIDLMLPDTDG 2267

Query: 62   LEITKQIKEDSELQEIPVIAVTAFA-MKGDEER--------IRKGGCEAYISKPISLSIF 112
            + + +++K  +  +++P++  T       DE R        I K G     +K  S    
Sbjct: 2268 IRLVEEVKTQNRFRDLPIVIYTGKELTPKDEARLRRYTGSVILKSG-----TK--SPEQL 2320

Query: 113  ME 114
            + 
Sbjct: 2321 LS 2322


>gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 232

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK+++V+D +   ++ R  +   GY  +   +G EA  L +   PD++++DI L +  G
Sbjct: 3   SKKILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEATRLMQTESPDLVLLDIMLPKKDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+    +  +P+I +TA   + D     + G + Y++KP S    +  +K  + 
Sbjct: 63  FAVCRDIR---RVSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|254446246|ref|ZP_05059722.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260554|gb|EDY84862.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 378

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++V+D  +N++L +  +E  G   L   NG   L++A+  +PD+I++D+ +  + G 
Sbjct: 15  RTVLVVDDEPINIQLLQRKLEWDGITVLTATNGEACLKVAKAERPDLILLDVMMPGMDGF 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +  +++ED   + IPVI VTA   K  +    + G   YI+KPI L   +  ++  +
Sbjct: 75  AVCAKLREDKRTKAIPVIFVTAHNSKKGKLEGLEAGAVDYITKPIDLDETIARVRTQL 132


>gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 226

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D+     + R  +  +G+   +  +G  ALE A   +PD+II+DI + E+ GLE+
Sbjct: 2   ILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAESLRPDLIILDIGMPEMDGLEV 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + +++     ++P++ +TA A + D     + G + Y+SKP S    +  ++  +  +
Sbjct: 62  CRALRK---TSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKRS 117


>gi|90414215|ref|ZP_01222196.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK]
 gi|90324765|gb|EAS41303.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK]
          Length = 488

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED+  N  + + ++  +G+      NG EA+        D+I+MD+Q+ E++G 
Sbjct: 360 ATILLVEDSPSNQMIAKAILAKNGFNVATANNGKEAVAALENTSYDLILMDLQMPEMNGF 419

Query: 63  EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E    I++  +   +IP+IA+TA   + D+ +    G + +++KPI+    +E +  ++G
Sbjct: 420 EACTYIRDLHNNKSDIPIIAMTANVSQQDQVQCLSVGMDDFLTKPINKIKMLEVLHHWLG 479

Query: 122 E 122
            
Sbjct: 480 R 480


>gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 218

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+V+D +  + L    +    Y+  +  NG +ALEL ++   D++++DI + ++ G E+ 
Sbjct: 1   MLVDDEKRMLDLVALYLRPHHYVCTKAANGYQALELLKKESFDLVLLDIMMPDMDGWEVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + I++     +IP+I +TA   + D  +  + G + Y++KP      +  ++  +  +
Sbjct: 61  RDIRK---FSDIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEELLARMEAVLRRS 115


>gi|313901404|ref|ZP_07834874.1| response regulator receiver protein [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468332|gb|EFR63776.1| response regulator receiver protein [Thermaerobacter subterraneus
           DSM 13965]
          Length = 144

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D    +K  R  +E +G+      +G +ALE       D+II+D+ L E+ 
Sbjct: 1   MSERILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGGIDLIILDLMLPEVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +++++     ++P+I +TA     D     + G + Y+ KP +    +  I+  +
Sbjct: 61  GLTVCREVRK---TSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED+     + R  +E  GY      +G+  L   R  +PD++++D+ L ++ G+
Sbjct: 6   AHILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEYRSGRPDLVVLDLMLPKLPGI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++ +SE   +PVI +TA   + D       G + Y+SKP S    +  +   +  
Sbjct: 66  EVCRALRIESE---VPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRR 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida
           subsp. salmonicida]
          Length = 231

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+    +L  +++   G+      +G E L    +   +++++D+ +  ++G
Sbjct: 1   MHKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLLRLAEQDFNLVLLDVMMPRLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  +++E     + PV+ +TA     D     + G + Y++KP      +  I+  + 
Sbjct: 61  FAMLAKLRE---THDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 238

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K+ + +VED     +L +  +E +G+      NG + LE +    PD+ I+DI L  I
Sbjct: 1   MSKQLIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSSGKVPDLFILDIMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ + +K+++  + IP+I +TA + + D+    + G + YI+KP S+   +  +K  
Sbjct: 61  DGLEVCRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKAL 120

Query: 120 IGE 122
              
Sbjct: 121 FRR 123


>gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 255

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED    +      +   GY A     G EA EL  + + D++++D+ L  ISG
Sbjct: 21  MTRILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGISG 80

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +++    EL+ +P+I VTA + + D     + G + Y++KP S    +  I   + 
Sbjct: 81  TTLCRRM---HELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLR 137

Query: 122 EA 123
            +
Sbjct: 138 RS 139


>gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
 gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
          Length = 229

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1361

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 1    MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            M  ++++ EDN +N +L   L+E  G+      NG++A+  +     D+I+MD+Q+  +S
Sbjct: 1127 MAAEILLAEDNIVNQRLAVRLLERFGHRVTLAENGLQAVAASETKDFDLILMDVQMPHMS 1186

Query: 61   GLEITK--QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            G E T   +I+E +  +  P+IA+TA A++ D E+  + G + Y+SKPI+       I+K
Sbjct: 1187 GFEATNTIRIREKALNKHTPIIAMTAHALQKDREKCLEAGMDDYLSKPINADQLRSQIEK 1246

Query: 119  YIGEA 123
            ++G A
Sbjct: 1247 FLGAA 1251



 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL-----ARQHKPDVIIMDIQLQEIS 60
            +I++DN+   K+   ++   G  A    +   A  L      R+H  + I MD QL    
Sbjct: 984  LIIDDNKTTRKVLLQMLGEYGISADSADSAETAFRLLRAASLRKHPYECIFMDAQLNGRD 1043

Query: 61   GLEITKQIKEDSELQEIPVIAVT-AFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G  + + IK+D+ + +  +  +      +GD E  R      Y++KPIS    +E ++
Sbjct: 1044 GFLVAEAIKQDTTIGDASIFMMICGSGQRGDPEN-RSSVISGYLTKPISPLEMLEALQ 1100


>gi|319640566|ref|ZP_07995286.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A]
 gi|317387843|gb|EFV68702.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A]
          Length = 1350

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN    +  R       Y  +  ++G E  ELA+   P++I+ DI +  + G+E+
Sbjct: 1100 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQARIPNIIVSDIMMPVMDGIEL 1158

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K+IKED     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1159 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1214


>gi|254882381|ref|ZP_05255091.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254835174|gb|EET15483.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1344

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN    +  R       Y  +  ++G E  ELA+   P++I+ DI +  + G+E+
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQARIPNIIVSDIMMPVMDGIEL 1152

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K+IKED     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208


>gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 236

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED     ++    +  +GY  +   +G  AL+L  + +PD++++D  L ++ G
Sbjct: 1   MTTILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLAREQPDLVVLDWMLPQVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++++S     PV+ +TA + + D     + G + Y++KP S+   +  ++  + 
Sbjct: 61  LEVLRRLRQESPT---PVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 684

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   ++   GY   +  +G +AL       PD+I++DI++ E+ G E+
Sbjct: 13  ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPPDLILLDIKMPEMDGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D +  EIPVI ++A     D+ +  + G   YI+KP  L   +  +K  +
Sbjct: 73  CQRLKADEKTAEIPVIFLSALDEVWDKVKAFEVGGVDYITKPFQLEEVIARVKTQL 128



 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N K+   L++  GY A    NG E L+   +   DVI+MD+Q+ E+ GL 
Sbjct: 562 RILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAISRQSYDVILMDVQMPEMDGLT 621

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-IGE 122
            T+ I ++   +   +IA+TA AM+ D E   K G + YISKPI  +  +   K   + +
Sbjct: 622 ATRYICQNYSQRPW-IIALTANAMQEDRETCLKAGMDDYISKPIRQADLIRVFKMIPLRQ 680

Query: 123 A 123
           A
Sbjct: 681 A 681



 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
           K+V+I++DN  + ++     +  G IA  T++G EAL    ++   DV I+D Q+ E++G
Sbjct: 416 KRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEALAWLNQKEAFDVAIIDRQMPEMNG 475

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L +  QI   S  +E+P++ +T       +  + +    A + KPI L     T+ + +G
Sbjct: 476 LTLGLQIHNQSGFKELPLVLLTPIGKMTTKTSLIERHFAACLPKPIKLGQLYNTLTQVLG 535

Query: 122 E 122
            
Sbjct: 536 R 536


>gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 220

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I ED     +L  +L+E+SGY      NGMEAL+L +    D++I+DI +  + G
Sbjct: 1   MTHILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++     + P+I +TA   + ++ +    G + YI+KP SL I +  I+  I 
Sbjct: 61  FEVAQQVRK---TSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
 gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
          Length = 233

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E   K+    +   GY  +   +G +A++LA    PD+I++D+ L E  G+E
Sbjct: 5   KILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEKDGME 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + IP+I +TA   + D+    + G + Y++KP S    M  +K  +  
Sbjct: 65  VCREVRAQ---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120


>gi|161524068|ref|YP_001579080.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341497|gb|ABX14583.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
          Length = 305

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 65  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 124

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 125 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 182

Query: 121 GE 122
             
Sbjct: 183 RR 184


>gi|116251496|ref|YP_767334.1| response regulator PleD [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256144|emb|CAK07225.1| putative two-component response regulator with GGDEF sensory box
           protein [Rhizobium leguminosarum bv. viciae 3841]
          Length = 457

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    +    +  +   +G  AL +  +++ D+I++DI +  I 
Sbjct: 1   MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K   +   IPV+ VTA     D  R  K G + +++KP++    +  +K  +
Sbjct: 61  GFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 80.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+    + +     ++      L   +   AL  A +   D++I++    +   L +
Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + +P++ +T         R    G   YI +P+  +  +      I  
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRR 274


>gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8]
 gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED +   +     ++  GY      +G+  L   R+  P+++I+D+ L  + G+E+
Sbjct: 9   ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVSPNLVILDLMLPVMDGIEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I++      +P++ +TA     D+      G + Y+ KP S+   +  ++ ++  
Sbjct: 69  AKRIRK---TSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRR 123


>gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +H+  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ I
Sbjct: 61  GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLI 117


>gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis F11]
 gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis H37Ra]
 gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis GM 1503]
 gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210]
 gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207]
 gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506]
 gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475]
 gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium
           tuberculosis H37Ra]
 gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis F11]
 gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis W-148]
 gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 230

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    +  R  +  +GY      +G+EAL++    +PD +++D+ +  + 
Sbjct: 1   MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +
Sbjct: 61  GLEVCRQLRGTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 232

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   K++IV+D +    L    +   GYI L+  NG+EALEL + +   +II+DI + ++
Sbjct: 1   MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E   +I+E+   + +P+I ++A +   D+      G + YI+KP +    +  +K  
Sbjct: 61  DGIEACMKIREE---KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|91214972|ref|ZP_01251944.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
 gi|91186577|gb|EAS72948.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
          Length = 228

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 66/125 (52%), Gaps = 4/125 (3%)

Query: 2   LKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           +KK    +++V+D+   +++    +   GY  +   +G++A++ A++ KP ++I+D+ + 
Sbjct: 1   MKKSDITILVVDDDPDILEILSYNLNAEGYKVITAEDGVQAVKKAKKKKPHLVILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  +QI+E   L+   +  +TA      +      G + YI+KP+   + M  +K
Sbjct: 61  EMDGIEACEQIRETKGLENTVITFLTARGEDYSQVAGFDAGADDYITKPVKPKVLMSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|86606963|ref|YP_475726.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555505|gb|ABD00463.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 344

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 68/119 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D   +  L  DL+E+ GY   +  NG +AL++    +PD++++D+ +  + G E
Sbjct: 28  HLLIVDDQPHSRLLLGDLLESIGYRVSEAENGQQALQMLPSLQPDLVLLDVMMPGLDGFE 87

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++IK D E + IPV+ + A + + +  R  + G + ++SKP   S  +  ++  + +
Sbjct: 88  VCRRIKADEETRLIPVVLIAAASDRKNRLRGIEAGADDFLSKPFDESELLARVRSLVRQ 146


>gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +H+  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ I
Sbjct: 61  GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLI 117


>gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 225

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++++D+     + R  +   G+       G E L LA   KPD++++D+ +    
Sbjct: 1   MEAKILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDVLMPGTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++       +P++ +TA     D  +    G + Y+ KP +L   +  I+  +
Sbjct: 61  GWEVCRRLRA---GSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|119493875|ref|ZP_01624440.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119452387|gb|EAW33578.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 335

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++    ++   GY   +  NG  AL  A+   PD+I++D+++ ++SG E+
Sbjct: 13  ILIVDDTPNNLRFLSSMLLEHGYEVRKAINGQMALRSAQAEPPDLILLDVRMPDMSGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +KE  E +EIPVI ++A   + D+    + G   Y++KP      +  +K +I
Sbjct: 73  CHALKEKPETREIPVIFLSALDHEKDKVIAFEMGAVDYVTKPFQFQEVLSRVKTHI 128


>gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 233

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED+   ++L    +  +G+      +G  AL  A++H+PD++++DI L ++ G 
Sbjct: 8   ARLLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIMLPDLDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++E       PV+ +TA     D+ R    G + Y++KP SL      I+  +  
Sbjct: 68  EVIRLLRE--GGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125

Query: 123 A 123
           +
Sbjct: 126 S 126


>gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 227

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+    +L    +   GY  LQ  +G +AL      +PD+ IMDI +  + G
Sbjct: 1   MAKILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEAVRPDMAIMDIMMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++ DS  Q++P++ +TA      + R  + G + Y+ KP      +  +K  + 
Sbjct: 61  WALCEALR-DSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALLK 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 252

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     +L    +  +G+  +   NG +AL LA Q+ PD++++D+ L ++ G 
Sbjct: 12  ATLLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPDMDGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T+++++    + +PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 72  TVTRRLRQ--AGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 129


>gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|220927156|ref|YP_002502458.1| response regulator receiver protein [Methylobacterium nodulans ORS
           2060]
 gi|219951763|gb|ACL62155.1| response regulator receiver protein [Methylobacterium nodulans ORS
           2060]
          Length = 126

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 86/122 (70%), Positives = 107/122 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  L+T NG+EA+ELARQH+PD+I+MDIQL E+S
Sbjct: 1   MTKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARQHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IKED EL+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T++ Y+
Sbjct: 61  GLEVTKWIKEDDELKSIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRTYL 120

Query: 121 GE 122
           G+
Sbjct: 121 GD 122


>gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
 gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
          Length = 240

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED +         +E  GY  +   +G  A+E   +H+ D++++D+ L +I G 
Sbjct: 6   KKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLMLPKIPGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+   +  ++P+I +TA     D     + G + Y+ KP S    +  ++     
Sbjct: 66  RVCRTIR---DTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRR 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|260170975|ref|ZP_05757387.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1361

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VEDNE  + L R ++    Y  L  +NG+EALE+ ++++ D+I+ D+ + E+ GLE
Sbjct: 1110 RLLLVEDNEELLYLMRRILSKHYY-VLTAKNGIEALEVMKEYEADIIVSDVMMPEMDGLE 1168

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +K + +   IP+I +TA     D       G  AYISKP  L +    I  ++ E
Sbjct: 1169 LCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAE 1227


>gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H  D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 231

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++ ED+    ++ R  +E +G+  +   NG+ A +L +   PD+ I DI + E++
Sbjct: 1   MSYKILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIMMPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+TK+++       IP+I ++A     D+      G + YI+KP +    +  ++  +
Sbjct: 61  GFELTKRVR---ITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
            Paraca]
          Length = 1081

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++I EDNE N+      +   GY  +  ++G +A++LA+   P++I+MDIQ+  I GLE 
Sbjct: 964  ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSESPNLILMDIQMPGIDGLEA 1023

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +I++   + ++P+IA+TA AM GD E+  + G   Y++KP+ L      I++ +
Sbjct: 1024 INRIRQIPTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1079


>gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 236

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M KK + IVED +   +L R  +E +GY      +G    E+  + KPD+ ++DI L  +
Sbjct: 1   MAKKLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G EI K+IKE+ +L++IP+I +TA   + D     + G + YISKP S+  F+  +K  
Sbjct: 61  DGFEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVA 120

Query: 120 IGE 122
              
Sbjct: 121 FRR 123


>gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + 
Sbjct: 3   MMPTILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  +
Sbjct: 63  GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|116071491|ref|ZP_01468759.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065114|gb|EAU70872.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 259

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++    L    +E SG+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYIPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L      IK  +  +
Sbjct: 65  CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123


>gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
 gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
          Length = 224

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D     +  R  +  SGY+     NG E L +A+++  D+I++D+ + E+ G E
Sbjct: 2   KILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVMMPELDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K +    + Q IPVI +TA +   D  +  + G + Y+ KP S +  +  I+  +  
Sbjct: 62  VMKTL----DAQNIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRR 116


>gi|206968529|ref|ZP_03229485.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737449|gb|EDZ54596.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 225

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          I++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLMLYLTPIGYNCVCATSGEEAILHIENRNFKFILLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|167032026|ref|YP_001667257.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858514|gb|ABY96921.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 241

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 55/121 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L +  +  SG+      +G            D++I+D+ L +  G 
Sbjct: 6   KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRRALESTPCDLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++      +P+I +TA + + D     + G + Y+ KP S       IK  +  
Sbjct: 66  SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++MIVED    +   +  +ET G+  L   +G + +     H  D+II+D+ L ++S
Sbjct: 1   MKPRIMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAVDLIILDVGLPDMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ KQI++   L+ +P+I +TA A + D     + G + YI+KP S       +K  +
Sbjct: 61  GFELCKQIRQ---LRSVPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|332706446|ref|ZP_08426507.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332354330|gb|EGJ33809.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 121

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 70/121 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED+    ++  DL++ SG       +G+EALE   +  PDV+++DI +  ++G
Sbjct: 1   MSKVLVVEDSLAQRQMISDLLKGSGLKVDVASDGVEALEHILESCPDVVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + Q +PV+  ++   + D     + G +AYI+KP   +  + T+++ + 
Sbjct: 61  YEVCRRLKADPKTQNVPVVMCSSKGEEFDRYWGMRQGADAYIAKPFQPTELIGTVRQLLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K+ + +VED     +L +  +E +G+      NG + L  + ++ PD+ I+DI L  I
Sbjct: 1   MSKQVIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLAYSSENIPDLFILDIMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ + +K+ +  + IP+I +TA + + D+    + G + YI+KP S+   +  +K  
Sbjct: 61  DGLEVCRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKAL 120

Query: 120 IGE 122
              
Sbjct: 121 FRR 123


>gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D    +++ +  +E  G+  +   NG   L+  ++ KP+++I+D+ L  IS
Sbjct: 1   MDKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I++      +P++ +TA   + D+      G + Y++KP S    +  +K  +
Sbjct: 61  GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA   K D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ ED ++     R  ++  G+  L+  NG+EAL L    +P +II+D+ +  ++G E
Sbjct: 7   RVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E S    +P+I +TA   + D+      G + Y+ KP  +   +  I+  +  +
Sbjct: 67  VCQRIREQSI---VPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRS 123


>gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 233

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   V+I +D      L    +   GY  ++  NG EAL++ +    D+ I+DI + +I
Sbjct: 1   MKPITVLIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSVDLAILDIMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+E      +P+I ++A A   D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIREK---HHLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H  D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1416

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++ +DN       + L+    Y      +G+ AL+ AR   PD+++ D+ +  + G
Sbjct: 642 SARILLADDNSDMRDYVKRLLSQQ-YEVESVADGLAALDSARGRVPDLVLTDVMMPGLDG 700

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++++ + + +++P+I ++A A +       + G + Y+ KP S    +  ++  +
Sbjct: 701 FGLLQELRANPQTKKVPIILLSARAGEEARVEGLEAGADDYLIKPFSARELLARVEAAL 759



 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+D++   +    ++E +G   +   +  EAL+   + +PD+++ DI + E  G  +
Sbjct: 1295 ILVVDDDDDTREFHTFVLEQAGAKVMAVASAKEALQALAESEPDILLSDIGMPETDGYML 1354

Query: 65   TKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +QI+  +  + ++IP IA+TA+A + ++++    G + ++SKP+     ++ I   IG 
Sbjct: 1355 MRQIRALQLKQAKQIPAIALTAYAGEINQQQAIASGFQRHLSKPVEPDELVKAIATLIGR 1414


>gi|261346810|ref|ZP_05974454.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
 gi|282565210|gb|EFB70745.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
          Length = 232

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL+       D++++D+ + + +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K++++   L + PVI +TA   + D+    + G + Y+ KP +    +  I+  + 
Sbjct: 60  IETLKELRQ---LHQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
 gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
          Length = 222

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+     L  + +   GY      +G+E ++  +++  D+II+DI +  + 
Sbjct: 1   MNSSILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIMMPNLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I++      +P+I +TA   + D+ +  +  C+ YI+KP S ++ ++ ++  +
Sbjct: 61  GYGVCKMIRK---TSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
 gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
          Length = 236

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|229114252|ref|ZP_04243673.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669272|gb|EEL24693.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 225

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118


>gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 235

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  +G+      NG EAL+ A + +PD+ ++D+ L ++ G 
Sbjct: 8   ARLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++     +  PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 68  TVTRRLRA--AGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125


>gi|237799640|ref|ZP_04588101.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022495|gb|EGI02552.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 140

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D     ++    +E +GY  ++  N  +A  +    KPD+I++D  L   SG+
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D    +IP+I +TA   + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|308188627|ref|YP_003932758.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
 gi|308059137|gb|ADO11309.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
          Length = 232

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL L   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
 gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED     +L RD +E S +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 219

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++++D+ +  K+  +L+  +GY+     +G + L++  + +PD+I+ D+++ E+ G
Sbjct: 1   MKRILVIDDDPILQKILENLLTQAGYLVAVVLSGKQGLDIWLEFQPDLIVSDVRMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  + I+     Q IP + +++             G + YI+KP  +   +  I++ + 
Sbjct: 61  FEFCRYIRSQPTGQLIPFLFLSSQTDVEARVEGHFSGADDYIAKPFEMKELLAKIERQLA 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|302334934|ref|YP_003800141.1| response regulator receiver protein [Olsenella uli DSM 7084]
 gi|301318774|gb|ADK67261.1| response regulator receiver protein [Olsenella uli DSM 7084]
          Length = 303

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 66/119 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++VED+  ++ L  ++++   Y  +   +G  AL+++++  PD+II+D+ L  ++G
Sbjct: 1   MKKILVVEDDPASLTLITEILKGYDYTVVSALDGRSALDVSKRENPDLIILDVMLPALNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ ++++  S+ +  P+I +T         R  + G   ++SKP      +  IK  +
Sbjct: 61  YQVCERLRSMSQFRNTPIIMLTVLNEDSQRIRALEAGANGFLSKPFKRVELLTRIKALL 119


>gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 223

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED      L RD +   G+   +  +G E L    + K D+II+DI + +++
Sbjct: 1   MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E   +  +PVI +TA   + D+    + G + Y++KP S  + +  +K  +
Sbjct: 61  GLEMLEKLRE---VSNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
 gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
          Length = 229

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED     +L RD +E S +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED     +L RD +E + Y+     +G E L+ A     D+II+DI L  ++G
Sbjct: 1   MKKILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIMLPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +  IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
 gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
 gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 233

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSSILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 239

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59
           +  V++V+D      L       SG+      +G  A E  +Q   K D++++D+ L  +
Sbjct: 1   MPTVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++++++    +IP+I +TA   + D     + G + Y++KP S    +   +  
Sbjct: 61  DGLEVCRRLRQEGV--KIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAV 118

Query: 120 IGE 122
           +  
Sbjct: 119 LRR 121


>gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 974

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 1   MLKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQ 55
           M K     +++V+D  +N+++  + +    Y  +Q  +G+EAL    Q  KPD++I+DI 
Sbjct: 572 MSKTGEFTILVVDDEPINLQVVTNHLSVHNYAIVQATSGIEALAKIEQGFKPDLVILDIM 631

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           + ++SG E+ ++I++     E+P+I +TA     D       G   Y++KPIS    +  
Sbjct: 632 MPKMSGYEVCQKIRQCFPATEMPIILLTAKEQVSDLVEGLSLGANDYLTKPISKHELIAR 691

Query: 116 IKKYI 120
           IK ++
Sbjct: 692 IKTHL 696



 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 1   MLKKVMIVEDNEL----NMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQ 55
           M  K+++V+D         + FR  I       +   NG++ALE        D+++ DI 
Sbjct: 1   MPAKILVVDDEPDLELLIRQKFRKKIRRQELQFIFAHNGVDALETLHAQPDIDMVLTDIN 60

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           + E+ GL +   + +D        + ++A+    +  +    G   +++KPI     
Sbjct: 61  MPEMDGLTLLTHLAQD--YPTTKAVILSAYGDMENIRKAMNLGAFDFLTKPIDFQDL 115


>gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
 gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
          Length = 1129

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 59/114 (51%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           + +D  +N+++    +   GY      +G E L L  Q KP+++++DI +  +SG ++  
Sbjct: 727 VADDEPVNLRILESFLRLEGYRVRTIADGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 786

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++E  +  E+P+I +T  +   D  +  + G   Y++KP +       I+ ++
Sbjct: 787 KLREHFDHAELPIIMLTGMSQTEDRVKGFEAGANDYLTKPFNKQELAARIQAHL 840


>gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ ++++V+D +   ++ R  +   GY      +G  A E+ +   PD++I DI +  + 
Sbjct: 1   MIARILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + K+++  S+   +P+I ++    +  + +    G + YI+KP +++  +  I+  +
Sbjct: 61  GLALCKELRARSQ---VPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 235

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+E   +L    +    Y      +G  AL    + KP+++++D+ L  I G 
Sbjct: 5   QRILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S     PVI ++A     D+    + G + Y+ KP      +  +K  I  
Sbjct: 65  QVCREIRAKSGT---PVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRR 121


>gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B
           str. Eklund 17B]
          Length = 223

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED      L RD +   G+   +  +G E L    + K D+II+DI + +++
Sbjct: 1   MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E   +  +PVI +TA   + D+    + G + Y++KP S  + +  +K  +
Sbjct: 61  GLEMLEKLRE---VSNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
 gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
          Length = 240

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K   V++VED E   ++ R  +E   +  ++      ALE+ RQ + D++I+D+ +  
Sbjct: 1   MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G    ++I+E     E+P++ +TA   + D     + G + Y+ KP S    +  +K 
Sbjct: 61  LDGWTTCRKIRE---FSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 LLRR 121


>gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 231

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+ +V+D    +++ +  +E  G+  +   NG   L   ++ KPD++I+D+ L  IS
Sbjct: 1   MGKKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I++      +P++ +TA   + D+      G + Y++KP S    +  +K  +
Sbjct: 61  GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|313204107|ref|YP_004042764.1| histidine kinase [Paludibacter propionicigenes WB4]
 gi|312443423|gb|ADQ79779.1| histidine kinase [Paludibacter propionicigenes WB4]
          Length = 1298

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KV++VEDN          +    Y  ++  NG + LE A +H+PD+II D+ + E+SG E
Sbjct: 1052 KVLVVEDNAEFRMFIMGEL-MEKYHVIEAANGKDGLEKALKHQPDLIITDVMMPEMSGTE 1110

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +K++ +   IPVI +TA      +    + G +AYISKP ++ I +  I   I +
Sbjct: 1111 LCRLLKKNIQTSHIPVILLTAKTSDKAQIEGFEAGADAYISKPFNMDILLLRIHHLIEQ 1169


>gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 290

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D    +++    ++ +GY  +   +G EALE+  + +PD++++D+ L  + G 
Sbjct: 26  ATILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPRLDGF 85

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + YI KP S       I   +  
Sbjct: 86  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142


>gi|330986627|gb|EGH84730.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 484

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G
Sbjct: 360 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 419

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 420 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 478


>gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|302188712|ref|ZP_07265385.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Pseudomonas
           syringae pv. syringae 642]
          Length = 783

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G 
Sbjct: 660 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 719

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +  +  + ++I
Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELISILDQWI 777


>gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
 gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
          Length = 243

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++D+ +    G+E
Sbjct: 11  RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 71  VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 127


>gi|119486072|ref|ZP_01620134.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
 gi|119456847|gb|EAW37975.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
          Length = 582

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 61/116 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED++   +  + ++E   +  +  R+G   LE A    PD+I+ DI + ++ G
Sbjct: 1   MIKILVIEDDKQVQENIQVILELEDFDVIVARDGQSGLEKAIASSPDLILCDIMMPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E+   ++       IP I +TA + + D  +  + G + Y++KP +    ++ I+
Sbjct: 61  FEVLSALQSIEATSNIPFIFLTAKSDRDDLRQGMELGADDYLTKPFTPKELLKAIQ 116


>gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL J1-023]
          Length = 240

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 67  VTKKLRQDKVG--VPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123


>gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++ ED+     L R  +E  G+  L   +G  A++  R   PD++++DI + ++ 
Sbjct: 4   MNARVLVAEDDPKQAHLIRTYLERDGHDVLVVTDGRRAVDETRSRHPDLLVLDIMMPKLD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + ++ DS+   +P++ +TA   +    +  + G + Y++KP S       ++  +
Sbjct: 64  GMDVCRVLRSDSQ---VPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51]
 gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 237

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D++  ++L +   E  G+  +   +G   L    +  PDV+I+DI L    GL 
Sbjct: 6   KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++    ++ IP+I +TA   + D     + G + Y++KP S    +  IK  +  +
Sbjct: 66  LCRRLRA---VRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRS 122


>gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 233

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E   K+    ++  GY  +   +G  A+ELA    PD+I++D+ L +  G+E
Sbjct: 5   KILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLMLPKKDGME 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + IP+I +TA   + D+    + G + Y++KP S    M  +K  +  
Sbjct: 65  VCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120


>gi|16330590|ref|NP_441318.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653081|dbj|BAA17998.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 950

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 69/116 (59%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDNE+N +   DL+ + G       NG EAL L   +  D I+MDIQ+  ++G + 
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+ I++    + +P+IA+TA AM GD+E+    G   +++KPI   +  +T+  +I
Sbjct: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWI 835


>gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 228

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + L +  +   GY  +   +G EA+  + +  PD+I++DI L + +
Sbjct: 1   MNEKILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAKSFESYPDLIVLDIMLPKKN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K+I++     + P+I +TA     D+    + G + Y++KP      +  IK ++
Sbjct: 61  GYDVCKEIQQKL---DTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED +   +     ++  GY      +G+  L   R+  P+++I+D+ L  + GLE+
Sbjct: 17  ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++      IP++ +TA     D+      G + Y+ KP S+   +  ++ ++  
Sbjct: 77  ARRIRK---TSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 131


>gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D+ + ++L +   E  G+  +   +G + L +  +  PDV+I+DI L    G
Sbjct: 4   MGKVLVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDRENPDVVILDIMLPGKDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++E   ++ IP+I +TA   + D     + G + YISKP S    +  IK  + 
Sbjct: 64  LTLCRSLRE---IRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           MLKK++I+ED+    ++ RD +E  G+      +G+E L  A   K D+I++D+ L  I 
Sbjct: 1   MLKKILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI ++I+  +E   +P++ VTA     D+ R    G + YISKP S +  +  +K  +
Sbjct: 61  GYEICRKIRGKTE---VPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANL 117

Query: 121 GE 122
            +
Sbjct: 118 AQ 119


>gi|160884768|ref|ZP_02065771.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483]
 gi|156109803|gb|EDO11548.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483]
          Length = 1320

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++V+DN   +   +  +  S +  L   NG EAL + +Q    +++ D+ + EI G+
Sbjct: 1069 KTILLVDDNPEILNYLKKELGKS-FNILTATNGKEALGMLQQQNISLVVSDVMMPEIDGI 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ K+IK D  L  +P+I +TA AM    E   + G + YI KP  +S     IK  +  
Sbjct: 1128 ELCKRIKTDHNLSHLPIILLTAKAMNLYIEEGFQAGADDYIVKPFKVSTLKIRIKNILNR 1187


>gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 225

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +L +  +E  GY      +G E L    + +PDV+++DI L  + G+ 
Sbjct: 6   RILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIMLPGMDGVG 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E       PVI +TA    GD+      G + Y++KP  +   +  ++  +  
Sbjct: 66  VLRRLRE--AGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRR 122


>gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
 gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
          Length = 240

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 14  ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 74  GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131

Query: 123 A 123
           A
Sbjct: 132 A 132


>gi|85716223|ref|ZP_01047197.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
 gi|85696895|gb|EAQ34779.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
          Length = 457

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N++L    +    +  +   NG +ALE   + + D+I++D+ + ++ 
Sbjct: 1   MSARVLVVDDIPANVRLLEARLSAEYFDVITASNGAQALETCARAECDIILLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPV+ VTA     D  R  + G + +++KP+S  +    ++   
Sbjct: 61  GFEVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 1/111 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    ++    +      +  EAL  A +   D++I+ + L+   GL 
Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAIDIEPDPSEALFRAAESNYDLLIVSLGLENFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++AV      G   R  + G   Y+  PI  +  + 
Sbjct: 216 LCSQARSLERTRHVPILAVADVDDNGRLLRGLEIGVNDYLLLPIDKNELLA 266


>gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 223

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVED      L RD +   G+   +  +G E L    + K D+II+DI + +++
Sbjct: 1   MKKSVLIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E   +  +PVI +TA   + D+    + G + Y++KP S  + +  +K  +
Sbjct: 61  GLEMLEKLRE---VSNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 229

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED     +  +   E  GY      +G   ++ A +   D++++DI L  + 
Sbjct: 1   MKEKILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I+E+S   +IPVI +TA     D+ R    G + Y++KP S+      ++  +
Sbjct: 61  GYEVLKKIRENS---DIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAAL 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D++  ++L +   E  G+  +   +G   L    +  PDV+I+DI L    GL 
Sbjct: 6   KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++    ++ IP+I +TA   + D     + G + Y++KP S    +  IK  +  +
Sbjct: 66  LCRRLRA---VRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRS 122


>gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D++   +L R  +E  GY  LQT +G+EA+ L RQ +PD++I+DI L ++ GL 
Sbjct: 6   TILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPDLDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E       P++ +TA A   D       G + Y++KP +    +  I+  +  
Sbjct: 66  VCQRVRE---FASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRR 121


>gi|84393815|ref|ZP_00992561.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
 gi|84375555|gb|EAP92456.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
          Length = 1129

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           I +D  +N+++    ++  GY      +G E +EL  + KP+++++DI +  +SG ++ +
Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCE 786

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++  +  ++P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 787 ALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL 840


>gi|332711421|ref|ZP_08431353.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332349970|gb|EGJ29578.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 516

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+  N+ +  +L+  SG+  L  ++G  AL+     +PD+I++DI +  I G E 
Sbjct: 33  IVIVDDSPTNLGVMFELLSNSGFKVLVAQDGYSALQKVNYTQPDLILLDIMMPGIDGFET 92

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K     ++IPVI +TA     D+ +  K G   Y++KP+        +  ++
Sbjct: 93  CRRLKAQESTRDIPVIFLTARTDTLDKVKGFKLGAVDYLTKPVQQEEVRARVNTHL 148


>gi|262164517|ref|ZP_06032255.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
           VM223]
 gi|262026897|gb|EEY45564.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
           VM223]
          Length = 376

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+DN  N  L   L++   Y  L   +G +AL +  + KPD++++DI + E+ G E
Sbjct: 6   TILIVDDNPENRALLAGLLKPH-YRLLVATSGAQALTICHKQKPDLVLLDIMMPEMDGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + ++++ D ELQ+IPVI +TA +   DE+R    G   YI KPIS  I +   + ++ 
Sbjct: 65  VCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLR 122


>gi|224535953|ref|ZP_03676492.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522441|gb|EEF91546.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1403

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE  ++L   L+  + Y+     NG EA+++  Q + D+I+ D+ + E+ G+E  
Sbjct: 1144 LIVEDNEELLQLMTKLL-GADYMVYTANNGKEAIDVVEQEEIDLIVSDVMMPEMDGIEFC 1202

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + IK   E   IPV+ +TA   + D     + G + +ISKP +LS+    I   + 
Sbjct: 1203 QYIKNKFETSHIPVVLLTAKNKEEDRVEAYESGADGFISKPFNLSVLHARISNLLR 1258


>gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 277

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     ++    ++ +GY  +   +G EALEL  +  PD++++D+ L ++ G 
Sbjct: 32  ATLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVMLPKLDGF 91

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 92  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 148


>gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 233

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +  ++L +  +   GY      NG +AL+      PD+II+DI L  + G E
Sbjct: 5   HILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVDDIAPDLIILDIMLPGLDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++E  + + IP+I ++A +   D+ +    G   Y++KP S       +K     
Sbjct: 65  VCHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRR 123


>gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 252

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 57/115 (49%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED+    ++    ++ SG+      +G+EA+ +A +  PD++++D  L  + GLE+ ++
Sbjct: 2   VEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGLEVCRR 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I+       +PV+ +TA     D       G + Y++KP S    +  ++  +  
Sbjct: 62  IRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 116


>gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
 gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
          Length = 229

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED     +L RD +E S +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|224536005|ref|ZP_03676544.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522372|gb|EEF91477.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1219

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+   +       ++ Y  +   NG E LE A +  PD+II DI +  + G+E+
Sbjct: 1072 ILVVEDNDDIREYIASSFSSN-YRIITAINGKEGLEQALKQIPDIIISDIMMPIMDGIEL 1130

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             KQ+KED     IPVI +TA     D+E   + G ++Y++KP S  +    +   +
Sbjct: 1131 CKQVKEDIRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLL 1186


>gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51]
 gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I +DN+    +  +  +  GY      +G  ALEL +Q +PD++++D+ + ++ G
Sbjct: 1   MLTLLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQLQPDLVLLDVMMPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I++      +P+I +TA     +       G + YI KP S    M  I+  + 
Sbjct: 61  FEVCREIRK---TSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 545

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61
           +++I EDN++N KL + ++   G+      NG EA++  ++     D+++MDIQ+    G
Sbjct: 423 RILIAEDNKVNQKLIKMMLTKEGFQVDIAANGQEAVDKLQESPENFDLVLMDIQMPVKDG 482

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E TK I+E +    +P+IA+TA A+KG  E+    G + Y++KPI  +  +  I++ + 
Sbjct: 483 FEATKAIRE-AGFHNLPIIAITAHALKGYREKCLASGMDDYVTKPIKKNEVISAIERQMT 541

Query: 122 EA 123
            A
Sbjct: 542 RA 543


>gi|257482695|ref|ZP_05636736.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331012227|gb|EGH92283.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 782

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G
Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 717

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776


>gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51]
 gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 3/124 (2%)

Query: 1   MLKKV-MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+KK+ +IVED      +  D +E  GY  L   +G+EALEL +  + D+I++DI + ++
Sbjct: 1   MMKKIILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIMMPKL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + + I++      + +I +TA + + D+    + G + YI+KP SL + +  I   
Sbjct: 61  DGLSVCRTIRKQD--SRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINAL 118

Query: 120 IGEA 123
           +  A
Sbjct: 119 LKRA 122


>gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++++D     +L R  ++  G+   + +NG E L +AR  KPD+I++DI + E+ 
Sbjct: 1   MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+    ++  ++  E P+I +TA     D+    + G + YI+KP +    M  ++  +
Sbjct: 61  GLDF---MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|17229772|ref|NP_486320.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131371|dbj|BAB73979.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 421

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D+ +   + +  ++  GY  +   NG++ +E A +H P +II D Q+ E+ GLE
Sbjct: 37  KILVIDDDRIIQLILKQALQEQGYEVILATNGLQGIEQADKHHPALIICDWQMDEMDGLE 96

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + ++IK +  L     I +T+     D       G + ++SKPI ++     ++  + 
Sbjct: 97  VCRKIKSEPTLSTTFFILLTSRRAVEDRVEGLDTGADDFLSKPIDVNELKARVRSGLR 154


>gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL S4-378]
          Length = 240

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 67  VTKKLRQDKVG--VPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123


>gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 236

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+   ++L    +   GY  L   NG +A+++A+   PD+I++DI + ++ G+E
Sbjct: 12  KVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGIE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + ++++ +++   ++ +TA + +  E    + G + YI+KPI     M  I      
Sbjct: 72  TGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRR 130


>gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 236

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D +    L    +++ GY  ++  NG EAL + R+   D++I+D+ + +++G+
Sbjct: 5   KTILIVDDEKEIRDLVEIYLKSEGYATVKACNGEEALNIIREQNIDLVILDVMMPKLNGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +I+E+   +E+P+I ++A +   D+      G + YI+KP +    +  +K  +  
Sbjct: 65  DTCLKIREE---REMPIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLRR 121


>gi|300867490|ref|ZP_07112141.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300334484|emb|CBN57309.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 611

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N++L   ++   GY   +  NG  AL  A+   PD++++DI + E+ G E+
Sbjct: 13  ILIVDDNPDNLRLLSKMLTKKGYHVRKALNGQMALTAAQAVVPDLVLLDIMMPEMDGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-EA 123
              +K D +  EIPVI ++A +   D+ +    G   Y++KP  L+  +  ++  +   A
Sbjct: 73  CTHLKADPKTAEIPVIFLSALSDAFDKVKAFAVGGADYVAKPFQLAEVLARVQNQLALRA 132


>gi|291570098|dbj|BAI92370.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 443

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 60/117 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVEDN  N+ L  D I   G       NG+EA+  A   +PD+I++DI + ++ G E
Sbjct: 8   TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEAIQPDLILLDIVMPKMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K++     IPVI +TA     D+ +    G   YI+KP      +  +  ++
Sbjct: 68  TCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHL 124


>gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 229

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 71/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED ++  ++ +D   +  YI  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKRILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRKA 122


>gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 227

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED+    +     +    Y      +G E  + A +++ DVI++D+ L  +SG E
Sbjct: 13  RVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGWE 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++     +  PV+ +TA     D  +    G + Y++KP  +   +  I+  I  A
Sbjct: 73  FLQKLR---PTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRA 129


>gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 225

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L   +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKRILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 2478

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV++V+D+  N+     ++E  G   +   NG  A+E+  QH+  D+++MD+ + E+ G
Sbjct: 2358 KKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMDG 2417

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             E  + I++D +   +P+IAVTA A+K D E+    G   Y+ KP+     +E I+
Sbjct: 2418 YETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2473



 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++ED+    ++   +    G+ AL    G   L +A + +P  I +DIQL  + G  + 
Sbjct: 2092 LLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMANEFQPHAITLDIQLPVVDGWSVL 2151

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKYIGE 122
             ++K +   + IPV  ++      D+ +    G   Y++KP+S   L      +  ++  
Sbjct: 2152 DRLKRNPRTRHIPVHVIS----VMDKNQGNSQGAFGYLTKPVSKEGLERVFNQLASFLER 2207



 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 17/122 (13%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++VED+++       L+   G         G E L      + D +++D+ L +  G
Sbjct: 2210 RRLLLVEDDDVQRDSLVKLLSEGGDVEVTAVATGEEVLHHLETGEFDCVVIDLMLPDTDG 2269

Query: 62   LEITKQIKEDSELQEIPVIAVTAFA-MKGDEER--------IRKGGCEAYISKPISLSIF 112
            + + +++K  +  +++P++  T       DE R        I K G     +K  S    
Sbjct: 2270 IRLVEEVKTQNRFRDLPIVIYTGKELTPKDEARLRRYTGSVILKSG-----TK--SPEQL 2322

Query: 113  ME 114
            + 
Sbjct: 2323 LS 2324


>gi|298488052|ref|ZP_07006089.1| sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157331|gb|EFH98414.1| sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 782

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G
Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 717

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776


>gi|254883604|ref|ZP_05256314.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254836397|gb|EET16706.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1446

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KVM+VEDN    +   +++  + Y  +   +G+ ALE   +  PD II DI +  + G+E
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1248

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + IKE+    +IP+I ++A +   D  +  + G + YI KP S       I+  I +
Sbjct: 1249 LIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307


>gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330972309|gb|EGH72375.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 794

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G 
Sbjct: 671 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 730

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +  +  + ++I
Sbjct: 731 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 788


>gi|320160069|ref|YP_004173293.1| putative two-component response regulator receiver protein
           [Anaerolinea thermophila UNI-1]
 gi|319993922|dbj|BAJ62693.1| putative two-component response regulator receiver protein
           [Anaerolinea thermophila UNI-1]
          Length = 300

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +++IVED+     + +    + GY       G +ALE  RQ+ P +I++DI L +I
Sbjct: 1   MGKARLLIVEDDVDISNMLKIYFSSQGYDVETALRGSDALEKTRQNMPHLIVLDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G E+ +Q++  +    IPVI +T    + D  +  + G + YI+KP  +      ++  
Sbjct: 61  NGYEVCRQLRTTTRTSHIPVIFLTQKDERSDRLQGLELGADDYITKPFDIDELRLRVQNA 120

Query: 120 IGEA 123
           I  +
Sbjct: 121 ISRS 124


>gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08]
 gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07]
 gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08]
 gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    L    +  SGY  ++  +G EAL++ ++    ++++DI + ++ 
Sbjct: 1   MKNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++E      IP++ ++A +   D+ +    G + Y++KP +       +K  I
Sbjct: 61  GIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 228

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 66/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    I   G+  +    G EAL   R+  PDVI++D  L  +SG+E+
Sbjct: 7   VLVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEALVAVRETPPDVIVLDWMLPHVSGIEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q+K  SE ++IPVI ++A +   D+ R  + G + YI+KP S++  +  ++  +  
Sbjct: 67  CRQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRR 124


>gi|71737066|ref|YP_275771.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557619|gb|AAZ36830.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|330889304|gb|EGH21965.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 782

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G
Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 717

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776


>gi|330980330|gb|EGH78455.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 272

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G     + +G EALE   Q   D+++MD  +  + G 
Sbjct: 149 ARVLLVEDNPVNQLVAKGILGKLGCEVTISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 208

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +  +  + ++I
Sbjct: 209 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 266



 Score = 34.7 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 26/93 (27%)

Query: 37  EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFA--MKGDEERI 94
           EA++L     PD++I           E    I+       +P++ VTA+   M G++   
Sbjct: 57  EAVDL--DGSPDLVIT-------DCPECLFAIR---PTTPVPILLVTAYGNFMPGEQVAA 104

Query: 95  R-----KGGCEAYISKPISLSIFMETIKKYIGE 122
                 +        +P++ +    T+++ +G+
Sbjct: 105 LAPLQQQA-------RPLARNALYHTLRRILGQ 130


>gi|294054856|ref|YP_003548514.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614189|gb|ADE54344.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 371

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 67/118 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D  +N+KL +  +E  G   L   NG E L++  + KPD+I++D+ + E+ G+E
Sbjct: 8   RILVVDDQPINIKLLQRKLERQGLEVLVAYNGRECLKVVEESKPDLILLDVMMPEMDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +K + E + IP++ +TA A K  +      G   YI+KPI L   +  ++  + 
Sbjct: 68  TCQHLKANPETETIPIMFITAKASKEGKLEGLDAGAVDYITKPIDLDETLARVRTQLR 125


>gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 225

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D+     L +  +   G++     +G   L   R   PD++I+D+ L  + 
Sbjct: 1   MSPRILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+  +++       +PV+ +TA     ++ R  + G + Y++KP S  +    ++  +
Sbjct: 61  GLEVLSRLRRVD--ANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
 gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 71/121 (58%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL RD +   GY  L+  +GMEA+E+  + K   ++I+D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKEIALVILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I++ S+    PVI +TA + + DE +  + G + YISKP S  I +  ++  +  
Sbjct: 65  QVCREIRQSSQT---PVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|87118375|ref|ZP_01074274.1| serine/threonine kinase with two-component sensor domain [Marinomonas
            sp. MED121]
 gi|86166009|gb|EAQ67275.1| serine/threonine kinase with two-component sensor domain [Marinomonas
            sp. MED121]
          Length = 2128

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 71/119 (59%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VEDN LN ++ + L++ S        NG+EA+E    ++ D++ MDIQ+  + G  
Sbjct: 1772 KILLVEDNPLNRQVAQGLLKESLLDIDLATNGLEAIEKLSNNEYDLVFMDIQMPILDGFS 1831

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             TK+I+E  E + +P+IA+TA A   D ++  + G   YISKPI  +   + + K+I E
Sbjct: 1832 ATKRIREKPEWKSLPIIAMTAHATDSDRDKCLQVGMNDYISKPIDPNKLTKMLAKWIKE 1890


>gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1023

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 71/118 (60%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ EDNE+N ++   L++ +G       NG EALE    +  D+++MD+Q+  + GL
Sbjct: 669 ARILVAEDNEINQEVILQLLQATGARVTLAENGREALEQVCANAYDLVLMDVQMPVMDGL 728

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+ I+  +E +E+P++A+TA A + D  +  + G   +++KPI      ET+ +++
Sbjct: 729 EATRAIRARAEYRELPILAMTANAFESDRRQCIEAGMNDHLAKPIEPERLTETLARWL 786



 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           ++ ++++D+     +   L+E+ G  A     G+E +    +         +I +D ++ 
Sbjct: 521 RRALVIDDHPEARAILIHLLESLGLRAEAVAGGLEGVSAVIEADRRGDPYHLITIDWKMP 580

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAM---KGDEERIRKGGCEAYISKPISLSIFME 114
           ++ GLE  ++++         ++ VTA+         E     G    ++KP++ S   +
Sbjct: 581 DMDGLETVRRLQALPVRYHPELLMVTAYGDQLPDSCRE---DMGAIQVLAKPVTPSGLHD 637

Query: 115 TIKKYI 120
            +   +
Sbjct: 638 ALAAAL 643


>gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 237

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +++IV+D +    L    ++  GY  ++  NG EAL +   +  D+II+DI + ++
Sbjct: 1   MSKERILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDVDLIILDIMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G+E   +I+E+   +E+P+I ++A +   D+      G + Y++KP +    +  ++  
Sbjct: 61  NGIEACLKIREE---REMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 236

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 68/124 (54%), Gaps = 5/124 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K   +M+V+D+    ++    ++  G+  +  ++G++A+E+  +  PD++I+DI + E
Sbjct: 1   MAKAPTIMVVDDDAHIREVVGFALKKEGFQTIPAKDGLQAVEMFAEATPDLVILDILMPE 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E+ K+I+  S   ++P+I +++   + D     + G + Y++KP S    +  +K 
Sbjct: 61  MDGTEVCKKIRAHS---DVPIIFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 RLRR 121


>gi|119483258|ref|ZP_01618672.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC
           8106]
 gi|119458025|gb|EAW39147.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC
           8106]
          Length = 753

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 67/116 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D  LN+K     +  + Y  L  + G  ALE+A   +P++I++DI++ E+ G E+
Sbjct: 11  VLVVDDYPLNLKFLCASLSRAKYEVLVAQTGESALEIAVSQQPELIVLDIRMPEMDGYEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K     ++IPVI +TA +   ++ +  K G   YI+KPI     +  I+ ++
Sbjct: 71  CRQLKASPVTRDIPVIFMTALSETDNKVKGLKLGAADYITKPIHPEEALSRIQTHL 126


>gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
 gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
          Length = 240

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 67  VTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123


>gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 235

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D++    L R  +E  GY  L   +G +A+   +   PD++++DI L    G +
Sbjct: 8   KVLIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKALSPDMVLLDIMLPGKDGWQ 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   +  +P+I +TA     D+    + G + YI KP      +  I      
Sbjct: 68  VCREIRK---ISNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRR 123


>gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +     +   GY      +G+ AL    +  PD++++++ L  + GL 
Sbjct: 6   RILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEPPDLVLLEVMLPGLDGLA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++       +P++ VT     GD       G + Y+ KP +    +  ++  +  
Sbjct: 66  VARRLRASGRT--VPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALLRR 122


>gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 239

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59
           +  V++V+D      L       SG+      +G  A E  +Q   K D++++D+ L  +
Sbjct: 1   MPTVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++++++    +IP+I +TA   + D     + G + Y++KP S    +   +  
Sbjct: 61  DGLEVCRRLRQEGV--KIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAV 118

Query: 120 IGE 122
           +  
Sbjct: 119 LRR 121


>gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 227

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G  AL    +   D++++D+ L E+SG
Sbjct: 1   MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGADIVLLDLMLPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++ S    +P+I VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRQRS---YVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|150002960|ref|YP_001297704.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931384|gb|ABR38082.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1440

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KVM+VEDN    +   +++  + Y  +   +G+ ALE   +  PD II DI +  + G+E
Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1242

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + IKE+    +IP+I ++A +   D  +  + G + YI KP S       I+  I +
Sbjct: 1243 LIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1301


>gi|218886726|ref|YP_002436047.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757680|gb|ACL08579.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 275

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L    ++  G+ A    +G E   +    + D++++D+ L    GL 
Sbjct: 6   HILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++  SEL   PVI +TA     D     + G + Y++KP +    +  I+  +  A
Sbjct: 66  LCRKLRARSEL---PVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRA 122


>gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
 gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++VED+    +L        GY    T +G EAL +A +  PD++I+D  ++  
Sbjct: 1   MPKAKLLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMIEGT 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ ++++ + E   +P+I +TA   + D  R    G + Y+ KP S    +  +   
Sbjct: 61  SGIEVCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 MRR 123


>gi|71908619|ref|YP_286206.1| PAS [Dechloromonas aromatica RCB]
 gi|71848240|gb|AAZ47736.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1560

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 69/118 (58%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              +++ EDN +N ++  DL+  +G      ++G EAL LAR+   D+I+MD+Q+  + GL
Sbjct: 1233 AHILLAEDNAINAEVASDLLRGAGLKVDLAKDGAEALSLARRQHYDLILMDMQMPVMDGL 1292

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+QI+      +IP++A+TA A   D++     G   +++KP++  +    + +++
Sbjct: 1293 EATRQIRTLPGWGKIPILAMTANAFDEDKDTCLAAGMNDHVAKPVAPDVLFAALARWL 1350


>gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 273

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      NG++A+  AR  +PD +I+DI L +I GLE
Sbjct: 42  RVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGLE 101

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ D+   ++PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 102 VLRRLRADAT--DVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRS 159


>gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L +D +E SG+      +G   L  A     ++II+D+ L  + G
Sbjct: 1   MNKILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDYNLIILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++++++   +  P+I ++A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICRRVRDE---KNTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED +    + +  + T+GY   ++ +G EA+++  +   D++I+DI L +  G
Sbjct: 1   MKKILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFYEKPFDLVILDIMLPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             I ++IKE      +PVI +TA   + DE    + G + YI+KP S  +F+  +K  +
Sbjct: 61  WSICREIKE---YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVL 116


>gi|320105191|ref|YP_004180782.1| response regulator receiver protein [Isosphaera pallida ATCC 43644]
 gi|319752473|gb|ADV64233.1| response regulator receiver protein [Isosphaera pallida ATCC 43644]
          Length = 145

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED+   +++    +E  G+  L   +G  AL+L ++ KPD+I++DI L +I+
Sbjct: 1   MSATILIVEDSPTVLRMASAALEDGGFRVLTATDGEAALQLVKREKPDLIVLDIILPKIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + +K D   + I ++ +++ + + D     + G + Y++KP      + T+ + +
Sbjct: 61  GFQVCRHLKNDPASRHIKILLLSSKSGESDRYWGLRQGADDYLTKPFEPEGLVSTVTRLL 120

Query: 121 GE 122
             
Sbjct: 121 NR 122


>gi|261868867|gb|ACY02044.1| two-component system sensor histidine kinase/response regulator
            [Flammeovirga yaeyamensis]
          Length = 1385

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 73/125 (58%), Gaps = 6/125 (4%)

Query: 1    ML-----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55
            M+      K+++++DN    ++ +DL++ + Y      NG   L+LA++  P++II DI 
Sbjct: 1121 MMETSTKAKILVIDDNFSIREMMKDLLKDT-YDVYLADNGKNGLDLAKKIMPNLIISDIM 1179

Query: 56   LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            + E+ G E+T++I+ED+ +  +P+I +TA   +  + +  + G +AY++KP +  + +  
Sbjct: 1180 MPEMDGYELTQRIREDNHICHLPIILLTAKKSEESKLKGYEYGVDAYVTKPFNSEVLLAR 1239

Query: 116  IKKYI 120
            I   I
Sbjct: 1240 ILTLI 1244


>gi|209527246|ref|ZP_03275757.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209492313|gb|EDZ92657.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 443

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 60/117 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVEDN  N+ L  D I   G       NG+EA+  A   +PD+I++DI + ++ G E
Sbjct: 8   TILIVEDNRSNLSLIADTIANVGCKIAIATNGIEAIAQAEAIQPDLILLDIVMPKMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K++     IPVI +TA     D+ +    G   YI+KP      +  +  ++
Sbjct: 68  TCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHL 124


>gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 227

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G  AL    +   D++++D+ L E+SG
Sbjct: 1   MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++ S    +P+I VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  SEVCRQLRQRS---HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601]
          Length = 233

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 3/115 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           V+D     ++    +   GY  +   +G EALE  R+  PD++++D+ + ++ G  + ++
Sbjct: 2   VDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYGVCQE 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++++S   ++P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 62  LRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113


>gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 253

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I +D     ++    +   GY  +   +G++A+E+  +  PD++++D+ +  ++G  
Sbjct: 15  KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGYG 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E   + +IP+I +TA     D     + G + Y++KP S       I   +  
Sbjct: 75  VCQKIRE---ISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130


>gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
 gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
          Length = 229

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 226

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++++D+    +L    +  +G       +G   L        D +++D+ +  + 
Sbjct: 1   MPTRVLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPYDAVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+I+  ++   +P++ +TA   + D     + G + Y++KP S    +  ++  +
Sbjct: 61  GLEVCKRIRAKTQ---VPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|153871894|ref|ZP_02000947.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152071639|gb|EDN69052.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 407

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I+EDN  N+ +  D +E +G   +  RNG   L+ A+  +PD+I++D+ +  I G E
Sbjct: 19  TILIIEDNPNNLGVIVDYLEEAGLKVVVARNGEMGLKRAQFAQPDIILLDVMMPGIDGFE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-E 122
             +++K D++ QEIPVI +TA     D+ +    G   YI+KPI     +  +  ++   
Sbjct: 79  TCRRLKADAKTQEIPVIFMTALDDPEDKLKGFGVGGVDYITKPIQHEEVLARVTTHLRIR 138

Query: 123 A 123
           A
Sbjct: 139 A 139


>gi|260435890|ref|ZP_05789860.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
 gi|260413764|gb|EEX07060.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
          Length = 262

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++    L    +E SG+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L      IK  +  +
Sbjct: 65  CQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123


>gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium intracellulare ATCC 13950]
          Length = 228

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    +  R  +  +GY      +G+EALEL    +PD +++D+ +  + GLE
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASDRPDALVLDVMMPRLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +  
Sbjct: 62  VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118


>gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
 gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
          Length = 229

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED     +L RD +E S +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 225

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + 
Sbjct: 1   MLPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 230

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  +++V+D +    L    ++   Y   +  +G EAL+  +++  D+ I+D+ + ++ 
Sbjct: 1   MVYNILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHYDLAILDVMMPDLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+ED      PVI +TA     D+      G + Y++KP +       +K  +
Sbjct: 61  GFSLLKKIREDYFF---PVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|119899448|ref|YP_934661.1| two-component system regulatory protein [Azoarcus sp. BH72]
 gi|119671861|emb|CAL95775.1| two-component system regulatory protein [Azoarcus sp. BH72]
          Length = 227

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVEDN   +    D +   GY     ++G+  L LA  H  D+I++D+ L  + 
Sbjct: 1   MNTRLLIVEDNRDILANLADYLTLKGYEVDCAQDGLTGLHLAATHHFDLIVLDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++E  E  + P+I +TA     D       G + Y++KP +LS  +  I+  +
Sbjct: 61  GFTLCKRLRE-GERSDTPIIMLTARDALDDRLIGFSAGADDYLTKPFALSELVARIEAVL 119


>gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630]
 gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291]
 gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291]
          Length = 230

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++V+D +    L    +  SGY  ++  +G EAL++ ++    ++I+DI + ++ 
Sbjct: 1   MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++E      IP++ ++A +   D+ +    G + Y++KP +       +K  I
Sbjct: 61  GIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|73539168|ref|YP_299535.1| PAS [Ralstonia eutropha JMP134]
 gi|72122505|gb|AAZ64691.1| PAS [Ralstonia eutropha JMP134]
          Length = 1060

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 71/119 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VEDN +N ++ + L+  +G    Q  NG  AL L  Q + D+++MD+Q+  + GL
Sbjct: 788 RTVLLVEDNPINQEVAQALLTQAGMQVTQANNGQHALGLLAQGRFDLVLMDVQMPMLDGL 847

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E T++I+ D     +PV+A+TA A++ D +R    G + Y+SKPI      + + + +G
Sbjct: 848 ETTQRIRRDPRHASMPVVALTASALEDDRQRCLAAGMDDYVSKPIEPRKLYQVMARLVG 906


>gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 229

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D      +    +    Y  +   +  EA        PD+I++D  L   S
Sbjct: 1   MQKQILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREAQAAIADRVPDMILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++ + ++  +E+P+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVM 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D E    L    +E  GY  ++  +G EA+ +      D++++DI + ++ G E+
Sbjct: 6   ILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIMMPKMDGYEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+E      +P+I ++A     D+ +    G + Y++KP +    +  +   +  
Sbjct: 66  TRRIREQ---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRR 120


>gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 231

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEI 59
           M  ++++V+D++         +  SGY      +G+EAL     +  PD ++MD+ +  +
Sbjct: 1   MAMQILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPRL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE TK ++ +    ++P++ +TA    GD       G + Y+ KP SL   +  ++  
Sbjct: 61  DGLETTKMLRANGN--DVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRAL 118

Query: 120 IGEA 123
              +
Sbjct: 119 TRRS 122


>gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 229

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D      +    +    +  +   +   A        PD+I++D  L   S
Sbjct: 1   MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDARAAQTAIADRVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++ +++   +EIP+I +TA   + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 236

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK+++++    ++P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQNKV--DVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL F2-208]
 gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A]
          Length = 246

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E
Sbjct: 13  KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 73  VTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 129


>gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family
           [Leptospirillum ferrodiazotrophum]
          Length = 232

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++++ED+     L    ++  G+      +G   L LAR+ KPD I++D+ L  I 
Sbjct: 1   MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + IK+D  +   PV+ VTA   + D     + G + YI KP      +  +K  +
Sbjct: 61  GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
 gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
          Length = 1044

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 77/118 (65%), Gaps = 3/118 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K+++ ED+E+N+   R+L+  +G+  +   NG E LE   +   D+++MDIQ+ E+ G+
Sbjct: 921  RKILVAEDDEVNLFAVRNLLTKNGHEVVTAHNGHEVLERIMEQDFDLVLMDIQMPEMDGI 980

Query: 63   EITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E T++I+   + +  + +P+IA+TA+AM GD E++   G + Y+SKP S+   ME IK
Sbjct: 981  EATRRIRVTEQATGKKPVPIIAMTAYAMNGDREKLLDKGVDGYVSKPFSIKTLMEVIK 1038


>gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 226

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           + K+++V+D+    +L +  +E +G    ++  +G+EAL +  Q   D+++MDI +  + 
Sbjct: 1   MAKILVVDDDPNIRELIKVFLEEAGMEGVMEASDGVEALSVMEQVSVDLVVMDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+ ++    IPV+ +TA        +  + G + Y+ KP   +  +  +K  +
Sbjct: 61  GWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|150024463|ref|YP_001295289.1| two-component system response regulatory protein involved in
           phosphate regulation [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771004|emb|CAL42471.1| Two-component system response regulatory protein involved in
           phosphate regulation [Flavobacterium psychrophilum
           JIP02/86]
          Length = 228

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K   ++++V+D    +++    +   GY      NG EA++ A++H P +IIMD+ + 
Sbjct: 1   MKKKEIRILLVDDEPDVLEIVGYNLSQEGYQIFTAENGKEAVQKAKKHNPHLIIMDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  + I++  EL  + +  +TA      +      G + YI+KPI   + +  +K
Sbjct: 61  EMDGMEACEIIRKVPELNNVIITFLTARNEDYSQVAGFDAGADDYIAKPIKPKLLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|148728193|gb|ABL96292.2| histidine kinase [Pseudomonas fluorescens]
          Length = 778

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 63/117 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + ++   G   +   +G EAL+     + D+++MD  +  + G E
Sbjct: 656 RVLLVEDNPVNQLVAKGMLGKLGCDVVVAAHGAEALDQLEHDEFDLVLMDCNMPVMDGYE 715

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++QI++      +P++A+TA AM  + ER R  G   Y++KP         + ++I
Sbjct: 716 ASRQIRQSGRWPHLPIVALTANAMSEERERCRAAGMSDYLAKPFRREELATLLDQWI 772


>gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IV+D     +L    ++ +G+       G  AL  A +H P ++++D+ L +ISG
Sbjct: 1   MSHVLIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAASEHPPHLVLLDLMLPDISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++ ++  +++ V+ +TA   + D  R  + G + Y++KP S+   +  IK  + 
Sbjct: 61  TEVCRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAILR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|37676245|ref|NP_936641.1| response regulator [Vibrio vulnificus YJ016]
 gi|37200786|dbj|BAC96611.1| response regulator [Vibrio vulnificus YJ016]
          Length = 378

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN  N  L   L+ ++ Y  L   NGM+A+   + H PD++++DI + E+ G E
Sbjct: 7   TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSHLPDIVLLDIMMPEMDGYE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  Q+K D     IP+I +TA +   DE++    G   YI KPIS  I M  ++ ++
Sbjct: 66  VCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHL 122


>gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 245

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+        D +E SGY  +   +G EAL +   + PD+I+ DI +  ++
Sbjct: 19  MPLTILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEAYHPDLIVTDIVMPRMN 78

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++    + +PVI +TA     +     + GC+ Y+ KP  L      I+  +
Sbjct: 79  GYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 138

Query: 121 GEA 123
             +
Sbjct: 139 ERS 141


>gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 226

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+  + ++   L+E +GY   +  +    L+L  QH PD+I++D+ + +I G E+
Sbjct: 3   ILVVDDDIPSARMTSYLLEEAGYRVFRAHDASNILQLIEQHNPDLILLDVMMPKIDGFEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +QI+ +S   +IP+I ++A     D     + G + Y+ KP   S  +  ++  +  
Sbjct: 63  CRQIRRNS---DIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRR 117


>gi|239909145|ref|YP_002955887.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239799012|dbj|BAH78001.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 581

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED  +N       ++  G+      +G EAL +  +   D+++MDIQ+  ++GLE
Sbjct: 460 RILLAEDEPVNRIFTVRALQKLGHAVDAAADGREALAMLERGAYDLVLMDIQMPRLNGLE 519

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+    +     +PV+A+TA+AM+GD ++  + G + Y++KP   +     +++ +
Sbjct: 520 ATRRIRSGQVEGVPPTMPVVALTAYAMEGDRQKGLEAGMDEYVTKPFEPAELTAAMERAL 579

Query: 121 GE 122
            +
Sbjct: 580 AK 581


>gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB]
 gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1439

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 73/121 (60%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VEDNE+N +L  +++   G +     NG +A++  RQ+  D+++MD  +  + G 
Sbjct: 1105 RHILLVEDNEVNRELAEEMLGNIGLLVDTAENGQQAIDRIRQNAYDLVLMDCHMPVMDGY 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              T+ I+ + +L ++P+IA+TA A+  D E     G + +I KPI +++   T+ +++ +
Sbjct: 1165 TATEYIRHELKLPQLPIIAMTANALHSDREHCLAVGMDDHIPKPIDVAVLHATLLRWLSQ 1224

Query: 123  A 123
            A
Sbjct: 1225 A 1225



 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
            + +IV+D+    ++F  ++   G      R+   AL              ++I+D ++ +
Sbjct: 959  RALIVDDSHGACEVFLHMLTVFGIDCHAVRSAPAALLELAAAAETGQAYGLLIIDWKMPD 1018

Query: 59   ISGLEITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKG------GCEAYISKPISLSI 111
            + G+E+ ++I + +   +   ++  TA+    D E +         G    +SKP + S 
Sbjct: 1019 MDGVELVEKISQSNGPERTAAIVMATAY----DHEELLAALGKHPVGA--ILSKPATPSS 1072

Query: 112  FMETIKKYIGE 122
              ++I   +  
Sbjct: 1073 LFDSIMVALHR 1083


>gi|300864661|ref|ZP_07109518.1| response regulator receiver protein [Oscillatoria sp. PCC 6506]
 gi|300337322|emb|CBN54666.1| response regulator receiver protein [Oscillatoria sp. PCC 6506]
          Length = 121

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  VM+V+D+    ++  DL++  G       +G+EALE  + + PD++++DI +  ++G
Sbjct: 1   MSTVMVVDDSVTLREMIADLLKGRGLNVTVASDGVEALEQIKANCPDLVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + Q +PV+  ++ + + D     K G +AYI+KP      + TIK+ + 
Sbjct: 61  YEVCRRLKSDPKTQNLPVVMCSSKSEEFDRYWGMKQGADAYIAKPFHPQELVGTIKQLLR 120


>gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 234

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED    ++L    +  +G+       G EA+  A++ +PD+I++D+ L ++ G 
Sbjct: 8   ARLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVMLPDMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++++      + PV+ +TA     D+ R    G + Y++KP SL   +  I+  +  
Sbjct: 68  EIVRRLR--GCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRR 125


>gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 229

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D      Y  L+ R+G EAL L  + +  ++I+DI L E+ 
Sbjct: 1   MTKTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     ++P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|197104776|ref|YP_002130153.1| stalked-cell differentiation controlling protein [Phenylobacterium
           zucineum HLK1]
 gi|196478196|gb|ACG77724.1| stalked-cell differentiation controlling protein [Phenylobacterium
           zucineum HLK1]
          Length = 454

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 65/121 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N++L    +    Y  L   +G  AL +A   +PD++++D+ +  + 
Sbjct: 1   MSARILVVDDIEANVRLLEAKLTAEYYEVLTASDGPTALAMAAAERPDIVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++K+D E + +PV+ VTA   + D     + G + +++KPI   + +  ++   
Sbjct: 61  GFSVCRRLKDDPETRHVPVVLVTALDGRADRVAGLEAGADDFLTKPIDDVMLLARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I++DN    +     +    +  +   +  +AL L+ +   D+ I++   +   GL 
Sbjct: 155 RILIIDDNVRQAQRVCTELAIE-HRPVIETDYDKAL-LSARGPVDLAIVNAGAKAFDGLR 212

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              Q++ D   + +P++AV  F  +    +  + G    +++PI         K  I  
Sbjct: 213 FCAQLRSDEATRGLPILAVVDFDERQRVVKALEIGVNDILARPIDPGELAARAKTQIRR 271


>gi|328543460|ref|YP_004303569.1| chemotaxis protein CheY [polymorphum gilvum SL003B-26A1]
 gi|326413204|gb|ADZ70267.1| CheY-like receiver [Polymorphum gilvum SL003B-26A1]
          Length = 123

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 90/122 (73%), Positives = 106/122 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  LQTR G+EALELAR H+PD+I+MDIQL E+S
Sbjct: 1   MAKTVLIVEDNELNMKLFHDLLEAHGYNTLQTRTGIEALELARAHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IKED +L  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS++ F+ET++ Y+
Sbjct: 61  GLEVTKWIKEDDDLCTIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVAKFLETVRSYL 120

Query: 121 GE 122
           GE
Sbjct: 121 GE 122


>gi|320158374|ref|YP_004190752.1| response regulator [Vibrio vulnificus MO6-24/O]
 gi|319933686|gb|ADV88549.1| response regulator [Vibrio vulnificus MO6-24/O]
          Length = 378

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN  N  L   L+ ++ Y  L   NGM+A+   + H PD++++DI + E+ G E
Sbjct: 7   TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSHLPDIVLLDIMMPEMDGYE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  Q+K D     IP+I +TA +   DE++    G   YI KPIS  I M  ++ ++
Sbjct: 66  VCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHL 122


>gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
          Length = 227

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 268

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             VM+V+D     ++    ++ +GY  +   +G EAL L  + +PD++++D+ L ++ G 
Sbjct: 23  ATVMVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVMLPKLDGF 82

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 83  AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 139


>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1431

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++ EDN +N  +   ++E  G       NG  A+E A   + D+I+MD Q+ E+ G 
Sbjct: 1158 ARILLAEDNPVNQDVASSMLEMLGCRITIAPNGRAAVEAATTGRFDLILMDCQMPEMDGF 1217

Query: 63   EITKQIKEDSEL----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
              T  I+         + +P+IA+TA AM+GD  R    G + Y++KP +++     + +
Sbjct: 1218 TATAAIRRQEATATDRRHVPIIALTANAMEGDRARCLAAGMDDYLTKPFTVAQLYAFLTQ 1277

Query: 119  YI 120
            ++
Sbjct: 1278 WL 1279



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 65/127 (51%), Gaps = 11/127 (8%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQ 57
            ++++IV+D   N+++    +++ G       +  +AL        +Q + D+ I+D+++ 
Sbjct: 1013 RQILIVDDMRTNLEILATHLQSWGATVFTAESADDALLQLEHFRHKQQQIDMAILDLRMP 1072

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTA---FAMKGDEERIRKGGCEAYISKPISLSIFME 114
               G+++ + IKE +  Q +P+IA+++    + + D          +++ KP+  S+  +
Sbjct: 1073 GRDGVDLARSIKEQAAYQNLPLIALSSVERLSDESDVTHRL---FHSFLRKPVRQSLLRD 1129

Query: 115  TIKKYIG 121
             + + +G
Sbjct: 1130 CLTRALG 1136


>gi|302383482|ref|YP_003819305.1| response regulator receiver modulated diguanylate cyclase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194110|gb|ADL01682.1| response regulator receiver modulated diguanylate cyclase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 454

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N++L    +    Y  L   +G  A+ LA   KPD+I++D+ +  + 
Sbjct: 1   MTARILVVDDVEANVRLLEAKLTLEYYDVLTCSDGATAVRLAASEKPDIILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++IK D     IP++ VTA   + D  +  + G + +++KP+   +    ++   
Sbjct: 61  GFETCRRIKADPATNHIPIVLVTALDGREDRIKGLEAGADDFVTKPLDDVVLFARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 78.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+DN        + +    +  +   +    L ++ +   D++I+++      GL 
Sbjct: 155 RVLIVDDNARQAAGIAEELTRE-HRPVIETDAAAGL-ISSKTPVDLMIVNVTAASFDGLR 212

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  Q++     + +P++AV       D     +  + G    + +P+         +  +
Sbjct: 213 LIAQVRSADPTRHLPILAV---VDPADRPRLVKALELGVNDILMRPVDPEELAARARTQV 269

Query: 121 GE 122
             
Sbjct: 270 RR 271


>gi|218236076|ref|YP_002365447.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218164033|gb|ACK64025.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNLPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
 gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|309791481|ref|ZP_07685985.1| signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226478|gb|EFO80202.1| signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 495

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 58/117 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   +      L+E  GY      +G EAL   R   PD+I++D+ + ++ G E+
Sbjct: 7   ILVVDDQPRSQMALSSLLEPEGYRLAFASSGPEALAQMRLIAPDLILLDVMMPDMDGFEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++I+ D     IPV+ VTA   +    R  + G + +++KP + +     I+    
Sbjct: 67  CERIRADPAFATIPVVMVTALDDQESLLRGIRSGADDFVTKPFNRTELRARIRTITR 123


>gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 225

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D +  +   +D ++  GY  +    G EAL   + + PD+I++D+ +  + 
Sbjct: 1   MNQTILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLKIN-PDLIVLDVMMPGMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I++       P+I ++A   + D  +    G + Y+ KP S+      I  ++
Sbjct: 60  GFALCELIRKSI---SCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 225

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 250

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 64/126 (50%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-------DVIIMDIQL 56
           ++++VED EL  ++    +E  GY  +   +G  A+E  +  +P       D++I+D+ L
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I+GL+I + ++       +P++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 80  PQINGLDICRLLRHQGN--PVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  +  
Sbjct: 138 RALLRR 143


>gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241]
 gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293]
 gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241]
 gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 225

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 233

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +      NG +AL     + P +I++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S     P+I ++A     D+    + G + YI KP      +  ++  +  
Sbjct: 65  QVCREIRAKS---STPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRR 121


>gi|107102374|ref|ZP_01366292.1| hypothetical protein PaerPA_01003436 [Pseudomonas aeruginosa PACS2]
          Length = 772

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 64/116 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + L+   G       +G+ AL++  +H  D+++MD  +  + G E
Sbjct: 650 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 709

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+QI++      +P+IA+TA A+  + ER R  G + Y++KP         + ++
Sbjct: 710 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 765


>gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 225

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   +++  G+      +G +AL   R+ +PD++++D+ L  ++
Sbjct: 1   MKPRILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + ++ DS    +P++ +TA +   D     + G + Y+ KP      +  I+  +
Sbjct: 61  GIDVCRVLRSDSG---VPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1767

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 77/119 (64%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGY 1483

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T+ I++  EL E+PVIA+TA AM GD+E   K G   +I+KPI +++  +T+ KY+G
Sbjct: 1484 QATQAIRKRPELAELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTLLKYLG 1542



 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ +DN     + R  +E+ G+     R+G EA+    Q +  V ++D ++  + G+E 
Sbjct: 1284 ILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQEYAVALIDWKMPNLDGIET 1343

Query: 65   TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             KQIK+ +  +  P ++ V+A A +    +I   G   YISKPIS S  ++ I   +G A
Sbjct: 1344 AKQIKQLA--KNAPRILMVSAHATQEFLSQIEALGLAGYISKPISASRLLDGIMNSLGRA 1401


>gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
 gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
          Length = 234

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++VED+     L +  +   GY      +G E  E+A  +  D+II+DI L E+ G
Sbjct: 3   MKKVLVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIMLPEMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + I ++++        P++ +TA + + D+    + G + YI+KP  +  F+  +K  + 
Sbjct: 63  IAICQKLRALDNF--TPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIMR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 235

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +V++V+D     +  R  +   G   +   NG EAL+L + ++  +I+MD+ + ++
Sbjct: 1   MKDSRVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+  T  I+E      +P+I +TA +   D+      G + YI+KP +    +  +K  
Sbjct: 61  DGIVTTSLIRE---FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 229

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E        L+   G+ A    +G +ALE   ++  D++++D+ L  +SG
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +++++ S    +PVI VTA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TDVCRELRQRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|220906498|ref|YP_002481809.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219863109|gb|ACL43448.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 120

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++VED    ++L    +  SGY  L   NG EAL+ A +H PDV++ D+ + E+SG
Sbjct: 1   MSTVLVVEDTPSELELISSYLRDSGYRVLSAANGKEALDQAMKHHPDVVVTDVVMPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ + +K++   Q +P++  ++   + D     K G + YI+KP +    +  ++  +
Sbjct: 61  FELCRNLKKNPATQNVPIVICSSKNQELDRLWALKQGADGYITKPFNREDLVRAVRSLL 119


>gi|27366537|ref|NP_762064.1| response regulator [Vibrio vulnificus CMCP6]
 gi|27358103|gb|AAO07054.1|AE016808_74 Response regulator [Vibrio vulnificus CMCP6]
          Length = 378

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN  N  L   L+ ++ Y  L   NGM+A+   + H PD++++DI + E+ G E
Sbjct: 7   TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSHLPDIVLLDIMMPEMDGYE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  Q+K D     IP+I +TA +   DE++    G   YI KPIS  I M  ++ ++
Sbjct: 66  VCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHL 122


>gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
 gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
          Length = 229

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 64/118 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I ED +    L    +E  GY      +G EAL + ++ +PD+++ D  + ++SG+E+
Sbjct: 5   IIIAEDEDALSTLLHYNLEKEGYETAMAADGDEALMMIKERQPDLLVCDWMMPKVSGIEV 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++  S  + +P++ +TA + + D  R    G + Y+ KP S+  F+  I+  +  
Sbjct: 65  CRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLRR 122


>gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
 gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
          Length = 232

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I +DN    K+        GY  +   +G EAL+L  +  P  +++D+ + ++ G
Sbjct: 1   MQNILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFDEVSPSAVLLDVMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+  S    +P+I VTA     ++      G + YI KP S S  M  ++  + 
Sbjct: 61  YEVCRKIRAKS---NVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
 gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 230

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59
           M  KV+I+ED     ++    ++ +GY   Q         L ++   PD++++D  L   
Sbjct: 1   MNAKVLILEDERDIREMLAFCMQQAGYQVEQAATAERVFGLLKEGFVPDIMLVDWMLPGA 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+TK++K+D + Q++PVI +TA   + D  +  + G + Y+ KP S    +  ++  
Sbjct: 61  SGVELTKKLKKDQKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAV 120

Query: 120 IGEA 123
           +  +
Sbjct: 121 LRRS 124


>gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 239

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M KK + IVED +   +L R  +E +GY      +G    E+  + KPD+ ++DI L  +
Sbjct: 4   MAKKLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGV 63

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G EI K+IKE+ +L++IP+I +TA   + D     + G + YISKP S+  F+  +K  
Sbjct: 64  DGFEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVA 123

Query: 120 IGE 122
              
Sbjct: 124 FRR 126


>gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
 gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
          Length = 255

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D +   ++ ++  E  G+   +  +GM+A+++A++   D+IIMD+ +  + G
Sbjct: 33  MYKILVADDEQKIREVIKEYAEYEGHTVYEAVDGMQAVDMAKEQDFDIIIMDVMMPRLDG 92

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+I++    +  P++ ++A   + D+    + G + Y+ KP S    +  I   I 
Sbjct: 93  FSACKEIRK---FKNTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIK 149

Query: 122 E 122
            
Sbjct: 150 R 150


>gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 233

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED     +L    ++ +G+  ++  N  +A  L     PD++++D  L   S
Sbjct: 1   MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAANLISDVLPDLVLLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++ +   + IP+I +TA   + D+    + G + Y++KP S    M  IK  +
Sbjct: 61  GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 233

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED+   ++L    +  +G+      +G  AL  A+ H+PD++++D+ L ++ G 
Sbjct: 8   ARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVMLPDLDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++E       PV+ +TA     D+ R    G + Y++KP SL      I+  +  
Sbjct: 68  EVIRMMRE--GGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125

Query: 123 A 123
           +
Sbjct: 126 S 126


>gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 224

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++E  G+ A+   +G  A+   R   PD++++D+ L  +S
Sbjct: 1   MPPKILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQDPDLVLLDLMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K+I+++S    +P++ +TA     D     + G + YI+KP      +  I+  +
Sbjct: 61  GVDICKEIRKES---NVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARL 117

Query: 121 GE 122
            +
Sbjct: 118 RQ 119


>gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured
           bacterium]
          Length = 962

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           K +++V+D+  N+     ++E  G   +   NG EALEL + +   D+++MDI + E+ G
Sbjct: 843 KTILMVDDDIRNVFALSSVLEEKGMTIVIGENGKEALELLKNNPGIDLVLMDIMMPEMDG 902

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+QI++ ++  ++P+IA+TA AMKGD ++    G   Y+SKPI +   +  ++ ++
Sbjct: 903 YEATRQIRKQTQFSKLPIIALTAKAMKGDRQKCIDAGANDYLSKPIDIDKLLSLLRVWL 961



 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 14/126 (11%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+    K+  DL    G+  L   +G   L+LA Q+ P  II+DI L  + G  + 
Sbjct: 578 LIIEDDPKFAKILFDLAREKGFKGLIAGDGAAGLQLADQYSPVAIILDIGLPGMDGWAVM 637

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF-----------ME 114
           +++K++ + + IPV  ++A           K G   Y++KP++L I             +
Sbjct: 638 EKLKKNPDTRHIPVHFMSAQDTP---LEAMKMGAIGYLTKPVTLDILNDAFNTIEETISQ 694

Query: 115 TIKKYI 120
           TIKK +
Sbjct: 695 TIKKLL 700



 Score = 90.6 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED++       +L+            G +A  L +  + D +++D+ L +ISG 
Sbjct: 697 KKLLVVEDDDTMRASMLELLNGEDVDITPAATGEKAYHLLQSERFDCMVLDLGLTDISGF 756

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI 116
            + ++IK D+ +  IP+I  T   +  +EE   K   E+ I K + S    ++ +
Sbjct: 757 GLLEKIKADATMSHIPIIVYTGKDLTKEEETKLKQHAESIIIKGVKSPERLLDEV 811


>gi|15598020|ref|NP_251514.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9948909|gb|AAG06212.1|AE004709_5 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 786

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 64/116 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + L+   G       +G+ AL++  +H  D+++MD  +  + G E
Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 723

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+QI++      +P+IA+TA A+  + ER R  G + Y++KP         + ++
Sbjct: 724 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779


>gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+I+ED+       R  +   G+       G + LE  R  +PD +++D+ L  +SG
Sbjct: 1   MPRVLIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+   +   +P+I  TA     D     + G + Y+ KP+   I    I+  + 
Sbjct: 61  LEVCRRIRAHDQ---VPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|152974374|ref|YP_001373891.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023126|gb|ABS20896.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 224

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+    +     +++DI +  + G E 
Sbjct: 4   ILLVDDEPKMLELLTLYLTPKGYNCVCATSGQEAISYIEKQNFKFVLLDIMMPNMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K I+       IP++ VTA   K D     K G + YI+KP      +  I+  +  
Sbjct: 64  CKNIRS---FSRIPILMVTARDQKIDVVHGLKIGADDYITKPFHEEELLARIEAVLRR 118


>gi|91976145|ref|YP_568804.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91682601|gb|ABE38903.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 1427

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +DN         L+  S Y      +G+ ALE A + +PD++I DI +  + GL 
Sbjct: 650 RVLLADDNPDMRDYVARLLGES-YEVDAVGDGVAALEAAWKQRPDLVISDIMMPRLDGLS 708

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + K ++ DS L ++PVI ++A A +       + G + Y+SKP S    +  ++  +
Sbjct: 709 LLKALRNDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNL 765



 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 58/126 (46%), Gaps = 14/126 (11%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGL 62
            V++VEDN    +    L+   GY  +   +  +AL+L  Q   + ++++ D+ +  + G+
Sbjct: 1307 VLVVEDNSEVGEFSTQLLHDLGYETVLASSAEQALKLLDQDADRFNIVLSDVVMPGMDGV 1366

Query: 63   EITKQIKEDSELQEIPVIAVT--AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++I++   L  +PV+  +  A  +  D     +      + KP S+    + +++ +
Sbjct: 1367 ALGREIRK--RLPNLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRAM 1419

Query: 121  ---GEA 123
                 A
Sbjct: 1420 TESRRA 1425


>gi|330953570|gb|EGH53830.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae Cit 7]
          Length = 783

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G 
Sbjct: 660 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 719

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +  +  + ++I
Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 777



 Score = 34.3 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 26/93 (27%)

Query: 37  EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFA--MKGDEERI 94
           EA++L     PD++I           E    I+       +P++ VTA+   M G++   
Sbjct: 568 EAVDL--DSSPDLVIT-------DCPECLFAIR---PTTPVPILLVTAYGNFMPGEQVAA 615

Query: 95  R-----KGGCEAYISKPISLSIFMETIKKYIGE 122
                 +        +P++ +    T+++ +G+
Sbjct: 616 LAPLQQQA-------RPLARNALYHTLRRILGQ 641


>gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D +    L +D +E  G   L   NG E +E A++  PD+I++DI + +I G
Sbjct: 1   MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+   +    P++ ++A   + D  +    G + Y+ KP SL   +  I  ++ 
Sbjct: 60  YEVCRKIR---DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|256376590|ref|YP_003100250.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920893|gb|ACU36404.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++VED        R  +E +G+      +G + L    + +P ++++DI L  + G
Sbjct: 1   MSTVLVVEDEPDIALALRLNLERAGHEVRVASDGKQGLRELHESQPSLVLLDIGLPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+   ++ ++PV+ +TA  M+ D+ R  +GG + Y++KP S    +  I+  + 
Sbjct: 61  WMVLERIR---DVSDVPVLLLTAHGMEADKVRGLRGGADDYLTKPFSAKELLARIEAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 269

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++V+D    +K+    +E +GY  +   +G EAL++  +  PD++++D+ L ++ G
Sbjct: 25  SATILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHREIPDLVVLDVMLPKLDG 84

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ +S    +P+I ++A     +       G + Y+SKP S       I   + 
Sbjct: 85  FAVCRRLRAESI---VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 141

Query: 122 E 122
            
Sbjct: 142 R 142


>gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           V+D     ++    +   GY  +   +G EA+    +  PD++++D+ + ++ G  + ++
Sbjct: 2   VDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQE 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 62  LRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113


>gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 250

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56
           ++++VED EL  ++    +E  GY  +   +G  A+E  +       +   D+II+D+ L
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I+GL+I + ++       +P++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 80  PQINGLDICRLLRHQGN--PVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  +  
Sbjct: 138 RALLRR 143


>gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 229

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D +   ++    +  +GY  L+   G +AL++ R+   D+II+D+ L ++SG
Sbjct: 1   MKNILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALDIHREVAVDLIILDLMLPDLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+  S    +P++ +TA   +         G + Y+ KP S    +  ++  + 
Sbjct: 61  EEVCREIRRQSA---VPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.]
          Length = 234

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    +K  + + E   Y      +G EA +   +   D+II+DI + +I GL 
Sbjct: 11  KILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIMMPKIDGLA 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++     + PV+ +TA     D+ +    G + Y+ KP S    M  ++     +
Sbjct: 71  VLQEIRKSGI--KTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRRS 128


>gi|296388689|ref|ZP_06878164.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 772

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 64/116 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + L+   G       +G+ AL++  +H  D+++MD  +  + G E
Sbjct: 650 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 709

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+QI++      +P+IA+TA A+  + ER R  G + Y++KP         + ++
Sbjct: 710 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 765


>gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 229

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    +  R  +  +GY      +G+EALE+    +PD +++D+ +  + GLE
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVMMPRLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +  
Sbjct: 62  VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118


>gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 228

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +H+  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAMDGKEALSIFEEHEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWTVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117


>gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
 gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++V+D +L +K  R  +E          +G EALE+ ++ + D+I++D+ L +  
Sbjct: 1   MGRKVLVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVMLPKYD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+   +  ++PVI +TA     D+    + G + YI+KP ++      +K  +
Sbjct: 61  GFEVCRQIR---DFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIM 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 231

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K+  +++V+D     +  +  +E    +      N  +A +  +++ PD++I DI + 
Sbjct: 1   MSKQASILLVDDEPGIRESVQAYLEYGDEFQVQVASNAHQAWDFLQKNPPDLVISDIMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G +  K+++E+   + IPV+ +TA  M  D  +    GC+AYISKP         +K
Sbjct: 61  EVDGYQFLKKLRENQRYETIPVVFLTARGMTSDRIQGYNAGCDAYISKPFDPEELEAIVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 NLLER 125


>gi|160890899|ref|ZP_02071902.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492]
 gi|156859898|gb|EDO53329.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492]
          Length = 658

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VEDNE  ++L   L++   Y      NG EA+ +      D+I+ D+ +  + G+E
Sbjct: 406 TILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNEDIDLIVSDVMMPVMDGIE 464

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K   EL  IPVI +TA   + D     + G +A+ISKP +L++    I+  +
Sbjct: 465 FCRCVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLL 521


>gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1]
 gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 1616

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 69/118 (58%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++VEDN+LN ++  +L+  +G+      +G  AL   R++  D+++MD+Q+  + G+
Sbjct: 1279 ARILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAYDMVLMDMQMPVMDGV 1338

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T++I+   +   +P++A+TA AM+ D +R    G   +I+KPI        + ++I
Sbjct: 1339 AATREIRRLGQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAALLRWI 1396



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57
            ++V++V+DN+    +  DL+    +      +G+EA++  ++        +++++D ++ 
Sbjct: 1130 RRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDWRMP 1189

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             + G+E    +          ++ VTA+  +     I + G E  + KP+S SI  +TI 
Sbjct: 1190 GMDGIETAHHLMALGLDPAPRLLMVTAYGREEVLNLITEAGIEDVLIKPVSASILFDTIM 1249

Query: 118  KYIG 121
            +  G
Sbjct: 1250 RLFG 1253


>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1767

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 77/119 (64%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGY 1483

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T+ I++  EL E+PVIA+TA AM GD+E   K G   +I+KPI +++  +T+ KY+G
Sbjct: 1484 QATQAIRKRPELAELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTLLKYLG 1542



 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ +DN     + R  +E+ G+     R+G EA+    Q +  V ++D ++  + G+E 
Sbjct: 1284 ILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQEYAVALIDWKMPNLDGIET 1343

Query: 65   TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             KQIK+ +  +  P ++ V+A A +    +I   G   YISKPIS S  ++ I   +G A
Sbjct: 1344 AKQIKQLA--KNAPRILMVSAHATQEFLSQIEALGLAGYISKPISASRLLDGIMNSLGRA 1401


>gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 269

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     ++    ++ +GY  +   +G EAL L  Q +PD++++D+ L ++ G 
Sbjct: 24  ATLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVMLPKLDGF 83

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 84  AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140


>gi|312959784|ref|ZP_07774300.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
 gi|311285950|gb|EFQ64515.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
          Length = 774

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 61/114 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  + + ++   G   +   +G EAL+L  +   D+++MD  +  + G 
Sbjct: 651 ARILLVEDNPVNQLVAKGMLGKLGCEVIVAAHGGEALKLLEEQPFDMVLMDCNMPVMDGY 710

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E ++QI+      ++P++A+TA AM  + ER R  G   Y++KP         +
Sbjct: 711 EASRQIRRSGRWPDLPIVALTANAMAEERERCRAAGMNDYLAKPFRREELNALL 764


>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 866

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 64/116 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+DN    K+    +  SGY   +T  G  ALE  ++  P+VI++D+ + +++G
Sbjct: 572 MSKILVVDDNLNTRKMLCRHLTKSGYEVSETDRGKIALEKIKEELPEVILLDVMMPDMTG 631

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E+ +Q+++  + + I +I +TA      +      G + Y++KP  +S  +  I+
Sbjct: 632 FEVCQQLRKTPQYELIYIIMLTALTDSKYKIEGLDKGADDYVTKPFDISELLARIR 687


>gi|70731962|ref|YP_261704.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5]
 gi|68346261|gb|AAY93867.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5]
          Length = 243

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D++   +L    +   G+    T +G        +   D++I+D+ L +  G
Sbjct: 5   SKSILLVDDDQEIRELLETYLSRCGFQVRSTADGAGFRLALNEAPSDLVILDVMLPDEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++  +  ++P+I +TA + + D     + G + Y+ KP S       IK  + 
Sbjct: 65  FSLCRWIRQHPKRSQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 234

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D+     + R  ++ +GY      +G  AL L  + KPD++++D+ L  + GL
Sbjct: 9   ARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++E  E   +PV+ +TA   + D     + G + Y+ KP S    +  +   +  
Sbjct: 69  EVCRRLRERGE---VPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|303246258|ref|ZP_07332538.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
 gi|302492321|gb|EFL52193.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
          Length = 1229

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 65/118 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++VEDNE+N ++ R+L+E  G       +G  A+ +        ++MD+Q+  + GL
Sbjct: 884  ARILLVEDNEINQQVARELLEGGGLEVAVAEDGERAVAMVEAGAYAAVLMDVQMPVMDGL 943

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T++I+ +     +P+IA+TA AM  D  +    G   +I KPI  +    T+ +++
Sbjct: 944  EATRRIRANPAHATLPIIAMTAHAMDQDRRKTLDAGMNDHIGKPIDPAELYATLARWL 1001



 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEISG 61
            V++V+DN  + ++F D++ +  +      +G EAL    +   ++  +++D ++  + G
Sbjct: 736 HVLVVDDNASSRQIFSDILLSLRFSVTTAGSGEEALRALAREDQNIRVVLLDWKMPGMDG 795

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               + I+  S  +   ++ VTAF  +         G +A++ KP+  S+   T+   +G
Sbjct: 796 TACARHIRAMSLPRRPAIVMVTAFGREEVRREAENVGVDAFLLKPVGRSVLFNTLAAVVG 855

Query: 122 EA 123
            A
Sbjct: 856 VA 857


>gi|289626956|ref|ZP_06459910.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|330866134|gb|EGH00843.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 782

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G
Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQDHFDLVLMDCNMPVMDG 717

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776


>gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT]
 gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT]
          Length = 222

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 72/119 (60%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED E   KL +D  + SG+  L+  +G++ L++ +++  D++I+DI +  + G  +
Sbjct: 3   ILIIEDEERMRKLLKDYFKRSGFSVLEAEDGVKGLKVFKENSVDLVILDIMIPCLDGWTV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K I+++S+   +P+I +TA + + D+    + GC+ Y++KP S  + +  +K  +  +
Sbjct: 63  CKSIRQNSK---VPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKRS 118


>gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus LGP32]
 gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio splendidus LGP32]
          Length = 1129

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           I +D  +N+++    ++  GY      +G E +EL  + KP+++++DI +  +SG ++ +
Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCE 786

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++  +  ++P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 787 ALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL 840


>gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1299

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VEDN       ++ +    ++  +  +G E   +A Q KPD+II D+ + ++ G+E
Sbjct: 1053 KILLVEDNNDFRHYLQEELRRH-FVVFEASDGEEGEAVALQQKPDIIITDLMMPKMDGIE 1111

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+IK + ++  IP+I +TA A   +EER  K G +AY++KP    I    I   + +
Sbjct: 1112 LCKRIKHNIDVSHIPIILLTASASMENEERGYKEGADAYMTKPFKWEILTARIHNLLAQ 1170


>gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 224

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED +   +     ++  GY      +G+  L   R+  P+++I+D+ L  + GLE+
Sbjct: 6   VLIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++      +P++ +TA     D+      G + Y+ KP S+   +  ++ ++  
Sbjct: 66  ARRIRK---TSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120


>gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 227

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++VED      L  D ++ SG+ A    +G   ++  +++ PD+II+D+ L    
Sbjct: 1   MKKKILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQWTKENCPDLIILDVMLPNKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI ++I+       IP+I VTA   + D     + G + YI KP S    +  +K   
Sbjct: 61  GFEICREIRS---FSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 229

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D      Y  L+ R+G EAL L  + +  ++I+DI L E+ 
Sbjct: 1   MTKTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     ++P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1778

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++I EDNE N+      +   GY  +  ++G +A++LA+   P++I+MDIQ+  I GLE 
Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSESPNLILMDIQMPGIDGLEA 1720

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +I++   + ++P+IA+TA AM GD E+  + G   Y++KP+ L      I++ +
Sbjct: 1721 INRIRQIPTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1776


>gi|159899985|ref|YP_001546232.1| response regulator receiver modulated diguanylate cyclase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893024|gb|ABX06104.1| response regulator receiver modulated diguanylate cyclase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 412

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++ +DNE   +L   ++   GY      +G + L  A+   PD++I+DI +  I 
Sbjct: 1   MPERILVADDNEALSQLLELILVEHGYEVTLANDGGDLLAKAQLQIPDLMIVDILMPRID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  +Q++ D+ L  IP+I +TA     D     + G + YI KP  +   +  ++  +
Sbjct: 61  GYEAIRQLRNDTRLAHIPIIVLTARTAIEDVVTGFELGADDYIVKPFQMPELLARVRAQL 120

Query: 121 GEA 123
             A
Sbjct: 121 LRA 123


>gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium bovis AF2122/97]
 gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 94_M4241A]
 gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T92]
 gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T17]
 gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis 210]
 gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN R506]
 gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN V2475]
 gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium bovis AF2122/97]
 gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis W-148]
 gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
          Length = 247

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 21  ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 80

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 81  GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138

Query: 123 A 123
           A
Sbjct: 139 A 139


>gi|330897241|gb|EGH28660.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 783

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G 
Sbjct: 660 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 719

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +  +  + ++I
Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 777



 Score = 34.7 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 26/93 (27%)

Query: 37  EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFA--MKGDEERI 94
           EA++L     PD++I           E    I+       +P++ VTA+   M G++   
Sbjct: 568 EAVDL--DGSPDLVIT-------DCPECLFAIR---PTTPVPILLVTAYGNFMPGEQVAA 615

Query: 95  R-----KGGCEAYISKPISLSIFMETIKKYIGE 122
                 +        +P++ +    T+++ +G+
Sbjct: 616 LAPLQQQA-------RPLARNALYHTLRRILGQ 641


>gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 250

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56
           ++++VED EL  ++    +E  GY  +   +G  A+E  +       +   D++++D+ L
Sbjct: 20  RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I+GL+I + ++       +P++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 80  PQINGLDICRLLRHQGNA--VPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  +  
Sbjct: 138 RALLRR 143


>gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +H+  +II+DI L E+ 
Sbjct: 1   MQRNILIVEDEDILREIVKDYLLDDGYEVLEATDGKEALSIFEEHEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++      +P+I +TA   + D     + G + Y++KP S  I +   K+ I
Sbjct: 61  GWSVCRRIRK---TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLI 117


>gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 224

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +     +   GY      +G+  L  AR+ +PD+I++D  L   S
Sbjct: 1   MTAHILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWMLPGFS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   +  ++PVI +TA     D       G + Y+ KP S+   +  ++ ++
Sbjct: 61  GVEVCRRLRATGD--KVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium)
           chloroplast
 gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium]
 gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium]
          Length = 255

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I +D     ++    +   GY  L   +G  AL L  +  P+++++D+ + +I G  
Sbjct: 9   KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDGYG 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S   +IP+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 69  VCQEIRKES---DIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124


>gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 235

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++V+D    + L    +E  GY  +   +G   ++LA     D II+D+ L ++ G
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVMLPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EITK+++++    E P++ +TA     D     + G + Y++KP S    +  +K    
Sbjct: 61  IEITKKLRQEKI--ETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 226

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED      + ++ ++ SG+  +   NG + L   + H  D+I++DI L    GL+
Sbjct: 5   TILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPVDLILLDIMLPGKDGLQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++    + ++P+I +TA   + D     + G + YI KP S    +  +K  +  +
Sbjct: 65  VCKEVR---TISQVPIIMLTAKVEEIDRILGLELGADDYICKPFSPRELVARVKALLRRS 121


>gi|89896369|ref|YP_519856.1| hypothetical protein DSY3623 [Desulfitobacterium hafniense Y51]
 gi|219667803|ref|YP_002458238.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335817|dbj|BAE85412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538063|gb|ACL19802.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I +D  +  +     ++  G+      +G EAL+ A +  PD+II+D+ + ++SG+E
Sbjct: 6   HILICDDQLIIHETIAAYLKAEGFTYGSAYDGEEALQKAYETAPDLIILDLMMPKLSGME 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +++     ++P+I +TA   + D+    + G + YI KP S    +  +K  +  
Sbjct: 66  VCRTLRK---TTDVPIIMLTAKGEEIDKILGLELGADDYIVKPFSPREVVARVKTVLRR 121


>gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 229

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +L +D +E SG+      +G   L+ A   + D+ I+D+ L  + G
Sbjct: 1   MSKILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+I+E    +  PVI ++A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKKIRE---TKNTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
 gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
          Length = 1125

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+++  + +   GY      NG +A+E     KP ++++D+ + E+SG E+
Sbjct: 719 ILVVDDEPVNLQILNNFLRLEGYRVKAVENGRQAIESVTMEKPALMLLDVMMPELSGYEV 778

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++E     E+P+I ++A     D+ +    G   Y++KP +       I+ YI
Sbjct: 779 CTHLRERYSRAELPIIMLSALGQVQDKVKGFDAGANDYLTKPFNKDELSARIRAYI 834


>gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
 gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
          Length = 242

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D++   +L +  ++   Y      NG E  +  +  + D+II+D+ L    GL
Sbjct: 4   KHLLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKLKTAQIDLIILDLMLPGEDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++  S    IPVI ++A   + D+    + G + YISKP +    +  IK  +  
Sbjct: 64  TLCRNLRAQS---NIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS]
 gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS]
          Length = 236

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED+     L +  +E +GY  +   +G EAL+  ++H  +++++DI L  I G E+
Sbjct: 6   ILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAVNLVLLDIMLPGIDGFEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+++ +  ++P++ +TA   + D+    + G + Y+ KP S       I+  +  
Sbjct: 66  CRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123


>gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 242

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L    ++ +GY  +   +G +AL L        I++D+ L ++ G
Sbjct: 3   MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK+++++    + P+I VTA   + D+    + G + YI+KP S    +  IK  I 
Sbjct: 63  MEVTKKLRQEKV--QTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|87301808|ref|ZP_01084642.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283376|gb|EAQ75331.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 263

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+E   +L     E  G++     +G++   LA Q  PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDEDMRELVAGHFEHGGFVVETADDGIKGQALALQASPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L   M  +K  +  +
Sbjct: 65  CQRLRRDERTAGIPILMITALGGTKDKVSGFNSGADDYLTKPFDLEELMVRVKALLRRS 123


>gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
 gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
          Length = 240

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 14  ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 74  GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131

Query: 123 A 123
           A
Sbjct: 132 A 132


>gi|315185413|gb|EFU19185.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta thermophila DSM 6578]
          Length = 431

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D   N++L   +++   YI     +G EAL    +   D+I++DI + E+ G E
Sbjct: 10  RILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTPFDLILLDIMMPEMDGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++ + + ++IP+I ++A A +    +  + G + Y+ KP      ++ ++  +
Sbjct: 69  VCRRVRNNPKTRDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQL 125


>gi|258625182|ref|ZP_05720098.1| response regulator rpfG [Vibrio mimicus VM603]
 gi|258582557|gb|EEW07390.1| response regulator rpfG [Vibrio mimicus VM603]
          Length = 377

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 4/124 (3%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M+     ++IV+DN  N  L   L++   Y  L    G +AL +  + KPD++++DI + 
Sbjct: 1   MMSELETILIVDDNPENRALLAGLLKPH-YRLLVATGGAQALTICHKQKPDLVLLDIMMP 59

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G E+ ++++ D ELQ+IPVI +TA +   DE+R    G   YI KPIS  I +   +
Sbjct: 60  EMDGYEVCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTR 119

Query: 118 KYIG 121
            ++ 
Sbjct: 120 THLR 123


>gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +H+  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ I
Sbjct: 61  GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLI 117


>gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
 gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
          Length = 1441

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
           +V+ V+D+ +N  + ++L+   GY  LQ  +G EAL++  + +  PDVI++D+ +  +SG
Sbjct: 721 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 780

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++E   L  IPVI ++A + +         G   Y+ KP      +  I  ++ 
Sbjct: 781 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 840


>gi|330876740|gb|EGH10889.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 273

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G
Sbjct: 149 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 208

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 209 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 267


>gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 221

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 68/122 (55%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+    ++    +   G   L+  NG+EAL+L  Q   DV+I+D+ L +++G
Sbjct: 1   MARVLLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLLPQA--DVVILDLMLPQLTG 58

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++ D    ++P++ +TA   + +  +  + G + Y++KP S    +  ++  + 
Sbjct: 59  WQVAQELRRD--YPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|116050828|ref|YP_790349.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586049|gb|ABJ12064.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 786

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 64/116 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + L+   G       +G+ AL++  +H  D+++MD  +  + G E
Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 723

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+QI++      +P+IA+TA A+  + ER R  G + Y++KP         + ++
Sbjct: 724 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779


>gi|330890495|gb|EGH23156.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 237

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 54/118 (45%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+V+D++   +L    +  +G+      +G +      +   D++I+D+ L +  G  + 
Sbjct: 1   MLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDGFSLC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           K I++      +PVI +TA + + D     + G + Y+ KP S       IK  +  A
Sbjct: 61  KWIRQHPRQPHVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRA 118


>gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 226

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           + K+++V+D+    +L +  +E +G    ++  +G+EAL +  Q   D+++MDI +  + 
Sbjct: 1   MAKILVVDDDPNIRELIKVFLEEAGMEEVMEASDGVEALSVMEQVSVDLVVMDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+ ++    IPV+ +TA        +  + G + Y+ KP   +  +  +K  +
Sbjct: 61  GWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 231

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 2   LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +KK   V+IVED     +L    +  +G+  +   +G+ A        PDVI++D  L  
Sbjct: 1   MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDAVLPDVILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SGL + ++ + DS  + +P++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  ASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|24372448|ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
 gi|24346431|gb|AAN53935.1|AE015531_1 sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
          Length = 1765

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 77/119 (64%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGY 1483

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + TK I++  EL ++PVIA+TA AM GD+E   + G   +I+KPI +++  +T+ KY+G
Sbjct: 1484 QATKAIRQRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLG 1542



 Score =  117 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ +DN     + R  +E+ G+     R+G EA+    Q +  V ++D ++  + G+E 
Sbjct: 1284 ILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIET 1343

Query: 65   TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             KQIK+  + +  P ++ V+A A +    +I + G   YISKPIS S  ++ I   +G +
Sbjct: 1344 AKQIKQ--QTKNAPRILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIMNALGRS 1401


>gi|304398989|ref|ZP_07380858.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304353449|gb|EFM17827.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 231

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL L   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLI-DNSIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896]
          Length = 230

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I+ED +    + +  ++  GY  +   +G++  +   Q   D+I++DI L  ++
Sbjct: 1   MKNTILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIMLPSMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I+E S    +P+I VTA   + D+    + G + YI+KP SL   +  +K  I
Sbjct: 61  GFDVCRHIREKS---SVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D    +++    ++  GY  L  + G EA+E+A       II+D+ L ++SG
Sbjct: 1   MSTILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLMLPDLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+  QI+++S    +P++ +TA + + D  R    G + Y+ KP S    +  ++  + 
Sbjct: 61  EEVCVQIRKESR---VPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
 gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
          Length = 233

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +      NG +AL     ++P+++++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++  S+   +P+I ++A     D+    + G + YI KP      +  ++  +  
Sbjct: 65  QVCRELRAKSQ---VPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRR 121


>gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 227

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++ T G+  +   +G EA+ + R+ KPD++++D+ L  + 
Sbjct: 1   MTSRILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+   I+ +S     P+I +TA +   D  +  + G + Y+ KP +    +  I+  +
Sbjct: 61  GIEVCSSIRAESGT---PIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRL 117

Query: 121 GEA 123
             A
Sbjct: 118 RPA 120


>gi|319642327|ref|ZP_07996985.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317386050|gb|EFV66971.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1343

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KVM+VEDN    +   +++  + Y  +   +G+ ALE   +  PD II DI +  + G+E
Sbjct: 1087 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1145

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + IKE+    +IP+I ++A +   D  +  + G + YI KP S       I+  I +
Sbjct: 1146 LIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1204


>gi|313107966|ref|ZP_07794135.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310880637|gb|EFQ39231.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 772

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 64/116 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + L+   G       +G+ AL++  +H  D+++MD  +  + G E
Sbjct: 650 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 709

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+QI++      +P+IA+TA A+  + ER R  G + Y++KP         + ++
Sbjct: 710 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 765


>gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D+     +    +   GY  ++  +G EAL+  +     ++I+D+ +  + G
Sbjct: 1   MNTILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAIKTTSIQLVILDVMMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +    +I+E   +   P+I ++A     D+      G + Y+ KP +    +  +K  + 
Sbjct: 61  IRACLKIRE---ISNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254413389|ref|ZP_05027160.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180009|gb|EDX75002.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 403

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 65/117 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ +  D +  SG+      +G  AL+     +PD+II+D+ +  I G E
Sbjct: 10  KLLIVDDQPHNLGILFDFLTRSGFKIFVALDGESALQRTEVTEPDLIILDVMMPGIDGFE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K++K++   Q+IP+I +TA +   D+ +  K G   YI+KPI     +  I+ +I
Sbjct: 70  TCKRLKQNPSTQDIPIIFMTALSDTVDKVQGFKLGAVDYITKPIHQEEVLSRIQTHI 126


>gi|66046841|ref|YP_236682.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257548|gb|AAY38644.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 796

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G 
Sbjct: 673 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 732

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +  +  + ++I
Sbjct: 733 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 790


>gi|299144918|ref|ZP_07037986.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
 gi|298515409|gb|EFI39290.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
          Length = 1346

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IV+DNE      R  +E   Y      NG EA E+ ++  PD++I D+ + ++ G E+ 
Sbjct: 1100 LIVDDNEDFRIFMRYSLELQ-YRVKLAVNGKEAWEMMQEELPDLVISDVMMPQMDGNELC 1158

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + IK+D     IPVI +TA      +    + G + Y++KP +++I +  I+K I
Sbjct: 1159 RLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLI 1213


>gi|288959268|ref|YP_003449609.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911576|dbj|BAI73065.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 310

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D   N+ +   +++   Y      +G  ALEL +   PD++++DI +  + G E
Sbjct: 7   KILVVDDIPSNVHVLSRILKDD-YDIYFATDGERALELVQSRMPDLVLLDIMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++IK D    +IPVI ++A     DE R  + G   +I+KPIS  I    ++ ++
Sbjct: 66  VCRRIKADPATHDIPVIFISAKGEVEDETRGLEVGAIDFITKPISPPIVRARVRNHL 122


>gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
 gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
          Length = 244

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D++   +L R  +E+ GY   +  +G EAL   +    D++++DI +  I G ++
Sbjct: 11  ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++E      +PVI V+A     D+      G + Y++KP +    +  ++  +  A
Sbjct: 71  LRRVRE---TSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRA 126


>gi|212712531|ref|ZP_03320659.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
 gi|212684747|gb|EEB44275.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
          Length = 232

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL+       D++++D+ + + +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K++++   + + PVI +TA   + D+    + G + Y+ KP +    +  I+  + 
Sbjct: 60  IETLKELRQ---IHQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|283851785|ref|ZP_06369063.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572905|gb|EFC20887.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 310

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N    ++L+   G+      +G EALE  R    D+++MDI +  + G+E
Sbjct: 189 KILLAEDNPINRLFLQELLRNEGHSITYAADGQEALEALRTEAFDIVLMDISMPRMDGIE 248

Query: 64  ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I+E    +   +IP++A+TA A + D ER  K G + Y+SKPI  +   E + KY
Sbjct: 249 ATRRIRESVSGKINAKIPIVALTAHAFRVDAERFLKAGMDGYLSKPIDPAKLKEILGKY 307


>gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL+    ++ D++I+DI + +++
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|146307491|ref|YP_001187956.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145575692|gb|ABP85224.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 631

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 67/116 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N  +   ++ + GY      +G +AL+   QH    I+MD +L  + G E 
Sbjct: 512 VLLVEDNPVNQTVIEAMLRSLGYQVSLVGDGQQALQSVAQHAYAAILMDCRLPLMDGYEA 571

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++I++ +  Q+IP+IA+TA A++GD E     G   Y++KP   +     +++++
Sbjct: 572 TRRIRQQASGQQIPIIALTANALQGDREACLAAGMNDYLAKPFKRADLQRILERWL 627


>gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 237

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     +G  AL+L  Q+   ++I+D+ + ++
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01]
 gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED +   +     ++  GY      +G+  L   R+  P+++I+D+ L  + G+E+
Sbjct: 6   ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFREVNPNLVILDLMLPVMDGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I++      +P++ +TA     D+      G + Y+ KP S+   +  ++ ++  
Sbjct: 66  AKRIRK---TSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120


>gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 228

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D E  ++     +   G+  +  + G EAL+ A++  P ++++D  L E+S
Sbjct: 1   MPHTLLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKAKETNPSLVVLDWMLPEMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +++++      + +I VTA   + D+    + G + YI+KP SL      I+  +
Sbjct: 61  GIDVCRELRK---TSHVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G +ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 233

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED+   ++L    +  +G+      +G  AL  A+ H+PD++++D+ L ++ G 
Sbjct: 8   ARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++E       PV+ +TA     D+ R    G + Y++KP SL      I+  +  
Sbjct: 68  EVIRMLRE--GGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125


>gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +++  ++I ED+    +L    +   GY  L+  +G EA+ L + +  D++I+DI +  +
Sbjct: 3   MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ + I+E      +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 63  DGYEVVRVIREQQ--YRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQ 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 232

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED+ +  +  +  +E  GY      +G+EA+E   +  PD +++D+ L  + G+
Sbjct: 8   ARILMVEDDAVIREATQLTLERHGYDVTTAEDGLEAIETFEKVHPDAVMLDVMLPGLDGI 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+E      +P++ V+A     D     + G + Y++KP    + +  ++  +  
Sbjct: 68  SVCRRIRE---TSLVPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRR 124

Query: 123 A 123
           A
Sbjct: 125 A 125


>gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   G+  ++  +G EA+++   Q    +I++D+ + ++ G 
Sbjct: 5   KILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K I++     ++P++ +TA   + DE +  K G + YISKP S  I +  ++  +  
Sbjct: 65  EVLKTIRK---YSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20]
 gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20]
          Length = 1160

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/117 (40%), Positives = 71/117 (60%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +MIV+D+  N+ +    +E  G   +   NG  ALEL R +K D+I+MDI +  + G 
Sbjct: 1039 KTIMIVDDDHRNVFVLAAALEDYGANIIAAENGKMALELLRTNKVDLILMDIMMPVMDGY 1098

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E  + IK D EL+ IPVIAVTA ++K D+E+  + G + YISKP+   + +  IK +
Sbjct: 1099 ETIRAIKGDKELKGIPVIAVTAKSLKSDKEKCIEAGADDYISKPVDYDVLIRLIKAW 1155



 Score = 87.1 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 22/126 (17%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++EDNE   K  +++ +  G+  +   +G E LE A+  + D I++DI L ++SG+E+
Sbjct: 794 ILVIEDNENFAKYLKEINDGMGFDTIIAGSGKEGLETAKNTRVDGILLDIMLPDMSGIEV 853

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDE----------------ERIRKGGCEAY----IS 104
            +++K   EL +IPV  ++   ++ D+                ERI   G +A     I 
Sbjct: 854 LRELKSIVELGKIPVHVIS--DLEEDDVSQIIAYLLNYSAQHPERIMIVGGDAIWQSTIK 911

Query: 105 KPISLS 110
           KP    
Sbjct: 912 KPFEER 917


>gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KV+IV+D+E   ++ +  +E+SGY    + +G  A  +  ++KPD++++DI L +  G+
Sbjct: 6   AKVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIMLPQEDGI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K I++       PVI +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 66  DVLKWIRKAD---NTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRR 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 226

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E  +++    +  + Y   +  +G  ALE   ++ PD++++D+ L +  GL 
Sbjct: 2   KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E   +  +P+I +TA + + D     K G + Y+ KP S    +  I+  +  
Sbjct: 62  VCRKIRE---VSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117


>gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+ +V+D    +++ +  +E  G+  +   NG   L+  ++ KPD++I+D+ L  IS
Sbjct: 1   MDKKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I++      +P++ +TA   + D+      G + Y++KP S    +  +K  +
Sbjct: 61  GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|260909644|ref|ZP_05916341.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 472 str. F0295]
 gi|260636255|gb|EEX54248.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 472 str. F0295]
          Length = 935

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++++DN          +    Y  +   +G + LE A Q  PDVI+ D+ +  I GL
Sbjct: 683 QRVLVIDDNADVAAFIGSQLSDK-YGIIYAHDGQDGLEKAEQLVPDVIVTDLMMPGIDGL 741

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+ +     IP+I VTA   + D  +  + G +AY+SKP +       ++K + +
Sbjct: 742 EVCRRIRANEVTSHIPIIVVTAKITENDRVKGLEAGADAYLSKPFNRDELRMRVEKLLEQ 801


>gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 239

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  +G+  +   NG EAL  A +H PD+ ++D+ L ++ G 
Sbjct: 11  ARLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVMLPDMDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++     +  PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 71  TVTRRLRA--AGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128


>gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D E   ++ R+++   GY  L+  +G EA++    HK   +I+D+ + ++ G E
Sbjct: 7   TVLIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHKIHFVILDVMMPKLDGYE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
               +++ S L   PV+ +TA + + D+    + G + Y++KP   +  +  ++  +  +
Sbjct: 67  TLDILRKQSGL---PVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRRS 123


>gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
 gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQE 58
           +K  K+++V+D +   KL RD +    Y  ++  NG EA+++    +  D+II+D+ + +
Sbjct: 7   MKQLKILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMPK 66

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E  ++I++ S+   +P+I +TA + + DE    + G + YISKP S  I +  +  
Sbjct: 67  MDGWEACREIRKISK---VPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDA 123

Query: 119 YIGE 122
            +  
Sbjct: 124 ILRR 127


>gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 233

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++IV+D +  ++L R  +E  GY      +G +ALE+    +PD++++D+ L  I
Sbjct: 1   MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ + I+ D  +Q  P++ ++A   + D     + G + YI+KP S  I +  I+  
Sbjct: 61  DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. 16M]
 gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
 gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella
           melitensis bv. 1 str. 16M]
 gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
          Length = 255

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 28  MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 87

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 88  VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 147

Query: 119 YIGEA 123
            +  A
Sbjct: 148 MLRRA 152


>gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +H+  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWTVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117


>gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 230

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G + 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCASSGEEAILHIENRNFKFVLLDIMMPKMDGWDT 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKKIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 232

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D+     L ++  +  GY      NG EALEL     PD++I+D+ + E+ G
Sbjct: 1   MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  KQI+  S    +PVI +TA     D     + G + Y+SKP +    +  IK  + 
Sbjct: 61  FETLKQIRNKS---SVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED     +L RD +E +G+      +G + L+ A +   D+II+DI L  ISG
Sbjct: 1   MKKILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIMLPGISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I KQI+    +  +P++ V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FDICKQIRA---VHNMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 230

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ 
Sbjct: 1   MMD-ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMPKMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E   +I+       +P+I VTA     D  +  K G + YI+KP      +  I+  +
Sbjct: 60  GWETCNRIRS---FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVL 116

Query: 121 GEA 123
             +
Sbjct: 117 RRS 119


>gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
 gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
          Length = 1356

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G   +  R+G E+L   R++   D+++MDI +  + G
Sbjct: 1235 RTVLVVDDDMRNIFALTSVLEEKGMQVVVARDGSESLTRLRENPEIDLVLMDIMMPVMDG 1294

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I++D +L+++P+IA+TA AMKGD+    + G   Y++KP+ +   +  ++ ++
Sbjct: 1295 YEAMREIRKDPKLKDLPIIALTAKAMKGDKNACIEAGANDYLAKPVDMDKLLSLLRVWL 1353



 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++I+ED++   ++ RD     G+ AL   +G   L  A  H P  II+D  L  ++G 
Sbjct: 967  KSLLIIEDDQHFARILRDQAREMGFKALLAADGETGLHFADFHGPSAIILDNILPGMNGW 1026

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLS---IFMETIKK 118
             + +++K D + + IP+  ++A     D      + G  A+++KP+ L      +E I  
Sbjct: 1027 TVMERLKNDPKTRHIPLSFISA----EDRSLEAMRMGALAFLTKPVELETLRTLLERIDS 1082

Query: 119  YI 120
            +I
Sbjct: 1083 FI 1084



 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 53/104 (50%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++++++V+D+ L  +  R LI       +   +G EAL L +    D +I+D+ L ++SG
Sbjct: 1088 MRRLLVVDDDALQRESIRALIGNGDVETVTAASGAEALGLLKSQNFDCMILDLGLNDMSG 1147

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
             ++ + ++       +PV+  T   +  +EER      E+ I K
Sbjct: 1148 FDVLRTLRSGPTPSTLPVVVYTGRDLSEEEERRLSRYAESIIVK 1191


>gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330]
 gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330]
 gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 226

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E  +++    +  + Y   +  +G  ALE   ++ PD++++D+ L +  GL 
Sbjct: 2   KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E   +  +P+I +TA + + D     K G + Y+ KP S    +  I+  +  
Sbjct: 62  VCRKIRE---VSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117


>gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +     ++  G+      NG +AL LA ++  D+ ++DI L  + G E
Sbjct: 7   RILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIMLPGMDGYE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    +PV+ ++A   + D+    + G + Y++KP  +   +  ++  +  
Sbjct: 67  LCRRLRSKT---TVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122


>gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
 gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
          Length = 234

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +  +   +G +AL     + P+++++D+ L  I G 
Sbjct: 5   QKILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+        P+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 65  QVCREIRAR---ANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121


>gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 227

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    +  R  +  +GY      +G  AL +    +PDV+I+D+ +  + GLE
Sbjct: 2   RVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDVLMPGLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++   +  ++PV+ +TA     D       G + Y+ KP +L   +  ++  +  +
Sbjct: 62  TCRRLRAAGD--DVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRRS 119


>gi|70732161|ref|YP_261917.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
 gi|68346460|gb|AAY94066.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
          Length = 227

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  K G + Y+ KP +LS     I+  +  +
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVMRRS 120


>gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 243

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L R  +   G+  +   +G     L  +   D+I++D+ +    GL 
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRLLLRETVDLIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y+ KP +    +  +   +  
Sbjct: 70  ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126


>gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905]
 gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905]
          Length = 230

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++VED+E   ++  + +   G+      NG EAL+       D++I+DI + +++
Sbjct: 1   MQKHILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMIPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K I+E + L   P+I ++A     D+      G + YI+KP S+  F   +K  I
Sbjct: 61  GLEVLKVIREQAAL---PIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii]
          Length = 1425

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
           +V+ V+D+ +N  + ++L+   GY  LQ  +G EAL++  + +  PDVI++D+ +  +SG
Sbjct: 705 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 764

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++E   L  IPVI ++A + +         G   Y+ KP      +  I  ++ 
Sbjct: 765 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 824


>gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 239

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 13  ARVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 73  GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130

Query: 123 A 123
           A
Sbjct: 131 A 131


>gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y  L+ R+G EAL L ++ + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALALFKEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++      +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRQA 122


>gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
 gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
          Length = 239

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 13  ARVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 73  GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130

Query: 123 A 123
           A
Sbjct: 131 A 131


>gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 228

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K VM+VED      L RD +E  G+      +G EA +   Q KP ++I+D+ +  + G
Sbjct: 1   MKHVMLVEDEVELAGLVRDYLEAGGFEVSVFHDGQEAYDHFLQRKPSLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   +IP+I VTA   + D       G + YI KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 235

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D    ++L    +   G+      +G + L++AR  +PD I++D+ +  + G 
Sbjct: 8   ARILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + PV+ +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 68  GLLRRLRADGV--DAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
 gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+IVED     ++       +G+  +   +G  AL   ++ + D++++D+ L ++S
Sbjct: 1   MPSHVLIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPDMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI +++K++ +   +PVI VTA   + D     + G + Y+ KP S+   +   +  +
Sbjct: 61  GTEICRRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAIL 120

Query: 121 GEA 123
             +
Sbjct: 121 KRS 123


>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 947

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED+    ++   +++   +      +G + +E+ RQ + D+I+MD+Q+  + G +
Sbjct: 828 RLLIAEDDATIRQVLATMLQRLQFSVDFAEDGAKVVEMWRQGEYDLILMDVQMPRMDGFQ 887

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ I+E  +   IP+IA+TA AMK D+ R    G + YISKPI+       I+K +G
Sbjct: 888 ATRAIREQEQGGRIPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKE---CIEKVMG 942


>gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196]
 gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291]
 gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58]
 gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 232

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D      L    +    YI  +  +G++AL     ++ D+ I+D+ L  ++
Sbjct: 1   MSGKILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVMLPGVN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+E       P+I +TA   + D+      G + Y++KP      +  +K  I
Sbjct: 61  GFSLCQKIREKYTY---PIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|22298696|ref|NP_681943.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294876|dbj|BAC08705.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 391

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D+     L R  +   GY      +G E + +A   KP +II D  + E+ GLE+
Sbjct: 10  ILVIDDDPTTRLLLRKTLRDLGYSVSVASHGREGIAIATAEKPALIICDWMMPELDGLEV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + IK+D EL     I +TA     D  +    G + ++SKPI  +     I+  + 
Sbjct: 70  CRHIKQDEELSRSFFILLTAKGELQDRIQGLDAGADEFLSKPIDPNELRARIQAGLR 126


>gi|297537697|ref|YP_003673466.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257044|gb|ADI28889.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    I  +G+ A++  +   A  L R+  PD+I++D  L  ++
Sbjct: 1   MPANILVVEDEPAIQELLALNITQAGHNAMRALSVEIAQNLMRETIPDLILLDWMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE  + +K D+  + IP+I +TA   + D+ R  + G + Y++KP S       IK  +
Sbjct: 61  GLEFARLLKSDNLTKTIPIIMLTARGDEYDKVRGLEVGADDYVTKPFSPRELNARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  Q K D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVIFEQEKVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRKA 122


>gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 230

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ 
Sbjct: 1   MMD-ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMPKMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E   +I+       +P+I VTA     D  +  K G + YI+KP      +  I+  +
Sbjct: 60  GWETCNRIRS---FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVL 116

Query: 121 GEA 123
             +
Sbjct: 117 RRS 119


>gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M +  V++V+D++   +  +  ++  G    + ++G++AL L ++ +  +I+MDI + ++
Sbjct: 1   MSQNNVLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G++ T +I+E    ++IP+I ++A +   D+      G + Y++KP +    +  +K  
Sbjct: 61  DGIKATFKIREK---KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|323493471|ref|ZP_08098593.1| response regulator [Vibrio brasiliensis LMG 20546]
 gi|323312294|gb|EGA65436.1| response regulator [Vibrio brasiliensis LMG 20546]
          Length = 376

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN  N  L   L++   Y  L   NG +AL LA    PD+I++DI + E+ G E+
Sbjct: 8   VLVVDDNAENRVLLSGLLKPH-YKVLVATNGKQALSLAESKLPDIILLDIMMPEMDGYEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K++S+   IPVI +TA     DE+R  + G   YI KPIS  I +  I  ++
Sbjct: 67  CLRLKDNSDTAFIPVIFLTAKTQIEDEQRGFEVGAVDYILKPISPPILLARIATHL 122


>gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED ++  ++  D +   GY  L+  +G +ALEL + H  D++I+DI L +I G
Sbjct: 1   MNKILVVEDEDILREVIMDYLIEEGYQVLEAADGEQALELFQSHSVDLVILDIVLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++I+++S    IP+I +TA + + D     + G + Y+ KP S  + M  +K+++
Sbjct: 61  WSVCRRIRKNS---NIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFL 116


>gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 224

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 65/114 (57%)

Query: 9   EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68
           ED E   +L +  +E + Y  +   NG++A+E+A++  PD+I++DI L    G ++ K+I
Sbjct: 2   EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKELPDLILLDIMLPGKDGYDVCKEI 61

Query: 69  KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++   I +I +TA + + D+    + G + YI+KP S+   +  +K  +  
Sbjct: 62  RNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRR 115


>gi|212692193|ref|ZP_03300321.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855]
 gi|212665314|gb|EEB25886.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855]
          Length = 1373

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VED+       + L   + Y  +   NG E + +AR+  PD++I D+ +  ++G E
Sbjct: 1113 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1171

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +KED +   IP+I +TA     +  +  + G + YI KP +  I    +K+ I
Sbjct: 1172 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1228


>gi|116073926|ref|ZP_01471188.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069231|gb|EAU74983.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 265

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +L    +E +G+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDGDMRELVGGHLEHNGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++ D     IP++ +TA     D+      G + Y++KP  L      +K  +  +
Sbjct: 65  CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRVKALLRRS 123


>gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 224

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59
           M+ KV+++ED E    + +  +E +GY  L   NG E L+L  ++K   +I++DI L +I
Sbjct: 1   MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG  + K I+E     ++PV+ +TA   + D+    + G + Y+ KP S    +  +K  
Sbjct: 61  SGWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LSR 120


>gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 237

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D+     + R  ++ +GY      +G  AL L  + KPD++++D+ L  + GL
Sbjct: 12  ARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGL 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++E  E   +PV+ +TA   + D     + G + Y+ KP S    +  +   +  
Sbjct: 72  EVCRRLRERGE---VPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 128

Query: 123 A 123
           A
Sbjct: 129 A 129


>gi|317050079|ref|YP_004117727.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951696|gb|ADU71171.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 232

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL L   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFEVMVASDGEQALNLL-DNTVDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 235

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IVED    ++L    +  +G+      NG +A+   ++H+PD+I++D+ L ++ G 
Sbjct: 7   ARLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDMDGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++      + PV+ +TA     D+ R    G + Y++KP SL   +  I+  +  
Sbjct: 67  DVVRRLR--GGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRR 124


>gi|171914206|ref|ZP_02929676.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Verrucomicrobium spinosum DSM 4136]
          Length = 2178

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60
            +KV++V+D+  N+     L+E      L   NG +A++L  ++ PD+  ++MDI + E+ 
Sbjct: 2058 RKVLVVDDDARNIFALSILLENHDMEVLSVTNGRQAVKLIEEN-PDLSMVLMDIMMPEMD 2116

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G +  ++I+++ E + +P+IA+TA AMKGD E+  + G   YI+KP++    +  ++ ++
Sbjct: 2117 GYQTMREIRKNPEFRTLPIIALTAKAMKGDREKCLEAGASDYIAKPVNTEQLLSLLRVWL 2176

Query: 121  GE 122
              
Sbjct: 2177 HR 2178



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 63/114 (55%), Gaps = 1/114 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K++++VEDNE+  +  ++L+       +    G EAL L      D  ++D++L ++SG
Sbjct: 1911 MKRLLVVEDNEIERESIKELLGGRDIQIVTVGRGKEALGLLLDQHFDCAVLDLRLPDMSG 1970

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
             E+ + I+++  LQE+P++  T   +  DEE+  +   ++ + K + S    ++
Sbjct: 1971 FELLETIQKEPTLQEVPIVVYTGKDLSPDEEKQLRQVAKSVVLKDVQSPERLLD 2024



 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED+    ++   L    G+  L    G +AL LARQ++   I +DI L ++ G  + 
Sbjct: 1793 LIVEDDVHYARVLLGLARDRGFKGLVATRGQQALALARQYQVTAITLDIFLPDMLGWTVL 1852

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIK 117
              +K D   + IPV  ++   +  +       G  +Y+ KP +        + IK
Sbjct: 1853 NNLKLDPTTRHIPVQIIS---LDEERRHGLSRGAFSYMVKPATTDDLEMAFDRIK 1904


>gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++ T G+      +G +AL    + KPD++++D+ L  + 
Sbjct: 1   MTARILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAFHEAKPDLVLLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++   I+ +S    IP+I +TA +   D  +  + G + YI KP +    +  I+  +
Sbjct: 61  GIQVCDLIRAESG---IPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRL 117

Query: 121 GEA 123
             A
Sbjct: 118 RPA 120


>gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +  +GY  +Q  +G +AL      +P+++I+D+ +  + G E
Sbjct: 2   KILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+  S    +PV+ +T    + D  R   GG + Y++KP S       ++  +  
Sbjct: 62  VCRRIRAQSI---VPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRR 117


>gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
            27405]
 gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
            27405]
          Length = 1160

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/117 (40%), Positives = 71/117 (60%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +MIV+D+  N+ +    +E  G   +   NG  ALEL R +K D+I+MDI +  + G 
Sbjct: 1039 KTIMIVDDDHRNVFVLAAALEDYGANIIAAENGKMALELLRTNKVDLILMDIMMPVMDGY 1098

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E  + IK D EL+ IPVIAVTA ++K D+E+  + G + YISKP+   + +  IK +
Sbjct: 1099 ETIRAIKGDKELKGIPVIAVTAKSLKSDKEKCIEAGADDYISKPVDYDVLIRLIKAW 1155



 Score = 87.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 22/126 (17%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++EDNE   K  +++ +  G+  +   +G E LE A+  + D I++DI L ++SG+E+
Sbjct: 794 ILVIEDNENFAKYLKEINDGMGFDTIIAGSGKEGLETAKNTRVDGILLDIMLPDMSGIEV 853

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDE----------------ERIRKGGCEAY----IS 104
            +++K   EL +IPV  ++   ++ D+                ERI   G +A     I 
Sbjct: 854 LRELKSIVELGKIPVHVIS--DLEEDDVSQIIAYLLNYSARHPERIMIVGGDAIWQSTIK 911

Query: 105 KPISLS 110
           KP    
Sbjct: 912 KPFEER 917


>gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 233

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    Y      +G +AL     +KP+++++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S   ++P+I ++A     D+    + G + YI KP      +  +K  +  
Sbjct: 65  QVCREIRAKS---DVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRR 121


>gi|226326821|ref|ZP_03802339.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
 gi|225204658|gb|EEG87012.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
          Length = 232

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL+L      D++++DI +   +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIASDGEQALKLLDA-SVDLLLLDIMMPRKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++++ +    PVI +TA     D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IETLKELRQNFQT---PVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|119486865|ref|ZP_01620840.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
 gi|119456158|gb|EAW37291.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
          Length = 564

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I+ED +   +   +L+E   +      NG++ LE A++  PD+I+ D+ + ++ G
Sbjct: 1   MTKVLIIEDEDSIRENIAELLEIEDFEVETAANGIQGLETAKKTIPDLILCDVMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++  ++++ SE    P I +TA A + D  +    G + Y++KP S    +E I   + 
Sbjct: 61  YQVLTELRKHSETANTPFIFLTAKAERMDLRQGMNLGADDYLTKPCSSQELLEAIVARLQ 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|209528442|ref|ZP_03276872.1| response regulator receiver protein [Arthrospira maxima CS-328]
 gi|284054062|ref|ZP_06384272.1| response regulator receiver protein [Arthrospira platensis str.
           Paraca]
 gi|209491121|gb|EDZ91546.1| response regulator receiver protein [Arthrospira maxima CS-328]
 gi|291571977|dbj|BAI94249.1| two-component response regulator (CheY subfamily) [Arthrospira
           platensis NIES-39]
          Length = 125

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 74/119 (62%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE+N  + +  +   GY  L   +G E + LA+   PD+I+MD+ L    G
Sbjct: 1   MAKILLVEDNEMNRDMLKRRLSRKGYDVLIAEDGAEGVNLAQTQAPDLILMDMSLPIKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T++IK D++ +EIPVIA+TA AM GD E+    GC+ Y +KP+     +E I+ ++
Sbjct: 61  WQATREIKADTKTKEIPVIALTAHAMAGDREKCLAAGCDDYDTKPVEFPRLLEKIETHL 119


>gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 241

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D +   +L +  +E   +   +  +G EA  +A +H    I++D+ L E+ 
Sbjct: 1   MSNEILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ +  +++E    +E P+I +TA   + +     + G + YI KP S    +  +K  +
Sbjct: 61  GITVASKLREH---KETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|329957721|ref|ZP_08298196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522598|gb|EGF49707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1348

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    +   D +  S Y   +  NG EAL L ++ + D+I+ D+ +  + GL+
Sbjct: 1102 KILIVEDNFDIRRYLSDELGKS-YHISEAGNGEEALALMKEQEADLILTDVMMPVMDGLQ 1160

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + KQIK++     IP+I ++A A   ++    + G + YI KP S+++    I+    
Sbjct: 1161 LCKQIKQNLRTCHIPIIILSAKADLKEQLEGLQVGADDYIPKPFSMAVITTKIRNLFR 1218


>gi|329296470|ref|ZP_08253806.1| DNA-binding transcriptional regulator CpxR [Plautia stali symbiont]
          Length = 232

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL L   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMDGFEVIVASDGEQALNLL-DNTVDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K++I+ED +   +     ++  GY      +G E L+   +  PD+I++DI L  I+G
Sbjct: 3   SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EI ++I++ S    +P+I VTA     D       G + Y++KP ++   +  I+  + 
Sbjct: 63  IEICRKIRQHS---NVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALR 119

Query: 122 EA 123
           ++
Sbjct: 120 KS 121


>gi|294776618|ref|ZP_06742087.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294449533|gb|EFG18064.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1441

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KVM+VEDN    +   +++  + Y  +   +G+ ALE   +  PD II DI +  + G+E
Sbjct: 1185 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1243

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + IKE+    +IP+I ++A +   D  +  + G + YI KP S       I+  I +
Sbjct: 1244 LIRHIKENVNTCDIPLIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1302


>gi|254412104|ref|ZP_05025879.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181070|gb|EDX76059.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 450

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 63/117 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+DN  N+    + +  S +  L   +G  A+E  +  +PD+I++D+ +  + G  
Sbjct: 10  KLLIVDDNPTNLGFLFEYLTQSDFKVLVALDGESAIEQVQYAQPDLILLDVMMPGLDGFT 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K D   Q+IPVI +TA +   D+ +  K G   YI+KP+     +  ++ ++
Sbjct: 70  TCKHLKSDPSTQDIPVIFMTALSDTVDKVQGFKIGAVDYITKPLQPEEVLCRVQTHL 126


>gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
 gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
          Length = 230

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++VED+E   ++  + +   G+      NG EAL    Q+  D++I+DI + +++
Sbjct: 1   MQKHILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K I+E + L   P+I ++A     D+      G + YI+KP S+  F   +K  I
Sbjct: 61  GLEVLKIIREQAAL---PIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
 gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
          Length = 1468

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
            +KV++V+D+  N+    +++E  G   L   NG + +E+  R    D+++MDI + E+ G
Sbjct: 1348 RKVLVVDDDVRNVFALTNILELHGMQVLYAENGRKGIEVLSRNEDVDLVLMDIMMPEMDG 1407

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I++     ++P+IAVTA AM+GD ++    G   Y++KP+     +  I++++G
Sbjct: 1408 YAATAAIRKMPRFADLPIIAVTAKAMQGDRDKTLAAGASDYVTKPVDAQELLSRIQQWMG 1467



 Score = 36.3 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 29   ALQTRNGMEALELARQHKPDVIIMDIQLQEISG-LEITKQIKEDSELQEIPVIA 81
                 + + ALE   +     +++D+ +    G  E  + + +   L+E+PV+A
Sbjct: 1223 VSTANDPVTALESLNRDDYHCVVLDLGM-GHDGAAEFLRGLDDYPVLRELPVLA 1275


>gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E         +   GY      NG++ L +   H  D++++D+ L  +SG
Sbjct: 1   MTRILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+       +PVI +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  TEVCREIR---RTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|71899946|ref|ZP_00682093.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730309|gb|EAO32393.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V+IV+D      +    +    + +LQ  +  EA  +     PD+I++D  L   S
Sbjct: 1   MQKRVLIVDDEVAIRDMVAYALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T++ ++ S  +EIP+I +TA + + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+KK++I+ED+    +L RD +E   +  +   +G+E L   +++K D++I+DI L +I 
Sbjct: 1   MMKKILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIMLPQID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I   I+E+   ++IPV+ V+A   + D+ +    G + YI+KP S S  +  +K +I
Sbjct: 61  GFSILHSIQEE---KDIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHI 117


>gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 243

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L R  +   G+  +   +G     +  +   D+I++D+ +    GL 
Sbjct: 10  KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S+    P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 70  ICRRLRAASD--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126


>gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare
           ATCC 13950]
          Length = 239

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 13  ARVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMPGMDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 73  GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130

Query: 123 A 123
           A
Sbjct: 131 A 131


>gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1134

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            KKV+IV+D+  N+     ++E      +   NG EAL+L  ++    +++MDI + E+ G
Sbjct: 1014 KKVLIVDDDMRNIFALATVLEDKNMEVVSADNGHEALKLLAENSDIALVLMDIMMPEMDG 1073

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  +QI++    +++P+IA+TA AMKGD+ +  + G   Y+SKP+     +  ++ ++
Sbjct: 1074 YETMRQIRQSPNFRKLPIIALTAKAMKGDKAKCIEAGANDYLSKPVDTDKLISLMRVWL 1132



 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++I+ED+     L  +    +G+  L    G   LELA  HKP+ II+DI L  I G 
Sbjct: 746 KSLLIIEDDRRFSHLLLESARETGFKCLLAEEGRMGLELAETHKPNAIILDIGLPSIDGW 805

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
            + + +K+  + + IPV  ++AF         +K G   Y+ KP+SL       + I+++
Sbjct: 806 TVMEHLKDHPDTRHIPVHFISAFDQ---RLEAKKMGAIGYLIKPVSLEQLDETFQKIEQF 862

Query: 120 IGE 122
           + +
Sbjct: 863 LAQ 865



 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 47/78 (60%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++++ D+E++ +    L++T             AL+  ++   D II+D+ +++ SG+
Sbjct: 868 KNLLVIADSEVHQQKILALLDTKEVNITLAVTRANALQHLKKIAFDCIILDMDIEQQSGI 927

Query: 63  EITKQIKEDSELQEIPVI 80
           ++ +Q++++S L ++P+I
Sbjct: 928 KLLEQMQQESGLCQVPLI 945


>gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
 gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++I+ED     +L RD +E + Y A     G E LE  +Q    ++++D+ L ++ G
Sbjct: 1   MERILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYRLVLLDLMLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI +QI+E SE   IP+I VTA   + D  R    G + YI+KP + +  +  +K +I 
Sbjct: 61  YEICRQIREISE---IPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
 gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +L +D +E SG+      NG   LE A   + D+ I+D+ L    G
Sbjct: 1   MSKILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLMLPGTDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+I+E   ++  P+I V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKKIRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 253

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I +D     ++    +   GY  +   +G++A+E+  +  PD++++D+ +  ++G  
Sbjct: 15  KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGYG 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+    + +IP+I +TA     D     + G + Y++KP S       I   +  
Sbjct: 75  VCQKIRA---ISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130


>gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
          Length = 247

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 21  ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 80

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 81  GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138

Query: 123 A 123
           A
Sbjct: 139 A 139


>gi|114561499|ref|YP_749012.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332792|gb|ABI70174.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 228

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+     L   L+E  G++  Q  +G + L +A+Q   D+I++D+ L +++G
Sbjct: 1   MNRILLIDDDIGLSDLLSQLLELEGFVLTQAYDGEQGLMMAQQQDFDLILLDVMLPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +++    ++ P++ +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 61  FEVLRALRQR---KQTPILMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 732

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED E+N +L R L+   G I  +  NG  ALE     + D+++MD  +  + G E
Sbjct: 610 RVLVVEDTEMNRQLVRILLGKRGCIVEEAVNGQLALEALALKRYDLVLMDCMMPVMDGYE 669

Query: 64  ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++++E         +PVIA+TA A++GD ER  + G + Y++KP S +     I+K+ 
Sbjct: 670 ATRRLREREAESGAARMPVIALTASAIEGDRERCLEAGMDDYLAKPFSAAQLTAVIEKW- 728

Query: 121 GEA 123
            +A
Sbjct: 729 RKA 731


>gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G  ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED E+  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEEILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRKA 122


>gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  +G+      +G  AL+L R  +PD++++D+ L ++ G 
Sbjct: 7   ARLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPDMDGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++E    +  PV+ +TA     D+ +    G + Y++KP SL   +  I+  +  
Sbjct: 67  TVTRRMRETG--RHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRR 124


>gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I +DN+  + +  +  + + +I     NG +AL+   ++K D++++D+ + +  G
Sbjct: 1   MYKVLIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVEENKFDIVLLDVMMPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +++++      +P+I +TA     ++    + G + YI KP S    +  I   + 
Sbjct: 61  FDVCREVRK---FSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 232

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D +L +K  R  +E  G       +G EA+ +A++ + D++++D+ L +  G
Sbjct: 1   MAKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVMLPKFDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E     E+P+I VTA     D+    + G + YI+KP ++      IK  + 
Sbjct: 61  FEVCQAIRE---FSEMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 219

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED      L +  +  +GY      +G EA +   Q   D+I++DI L EI G
Sbjct: 1   MNRILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEGFDLILLDIMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   I+       IPVI +TA A   D+ +  K G + Y++KP  ++  +  ++  + 
Sbjct: 61  YELMDYIRPLE----IPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|307946430|ref|ZP_07661765.1| response regulator receiver protein [Roseibium sp. TrichSKD4]
 gi|307770094|gb|EFO29320.1| response regulator receiver protein [Roseibium sp. TrichSKD4]
          Length = 125

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/122 (74%), Positives = 107/122 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  LQTR G+EAL+LARQHKPD+I+MDIQL E+S
Sbjct: 1   MSKTVLIVEDNELNMKLFHDLLEAHGYSTLQTRTGIEALDLARQHKPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IKED +L  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS++ F+ET++ YI
Sbjct: 61  GLEVTKWIKEDEDLASIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVARFLETVRSYI 120

Query: 121 GE 122
           G+
Sbjct: 121 GD 122


>gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1142

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK+++ +D+  N+     ++E +G+      NG EA+     +   ++I+MD+ + E+ G
Sbjct: 1021 KKLLLADDDMRNIFALSAVLEDAGFSIEIATNGKEAINKLEDYPEIELILMDVMMPEMDG 1080

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +E T++I++      IP+IAVTA AM+GD E+  + G   YISKP+ +   +  IK ++
Sbjct: 1081 IEATRRIRQVPRWANIPIIAVTAKAMQGDREQCLEAGANDYISKPVDVDKLLSLIKVWL 1139



 Score = 87.9 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED+ +         + SG+  +   +G +ALE+     P  II+D+ L ++SG E
Sbjct: 749 RLLLIEDDTIFAADMASKAQGSGFEVVIASSGRQALEMVTGFDPTAIILDMHLPDMSGEE 808

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108
           + K +K DS  + IPV   T  +    +E + K G   ++ KP+ 
Sbjct: 809 VLKALKNDSRTRLIPVH--TVSSGDYFDEEMIKNGAIGFMQKPVD 851



 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++++ED+    K   D +  +    L   +  EAL L    + D II+DI+L +++GL
Sbjct: 872 QRILLIEDDAYQSKYLGDFLAGNNIFVLYAYSAAEALSLLGTDRVDGIILDIRLADMNGL 931

Query: 63  EITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRK 96
           ++   IKE+ +   IPV+  TA    + D  R+ K
Sbjct: 932 DLLDTIKENPQWSAIPVVVNTAEDLSQADLSRVMK 966


>gi|330957938|gb|EGH58198.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 227

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120


>gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 235

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +V++V+D     +  R  +   G   +   NG EAL+L + ++  +I+MD+ + ++
Sbjct: 1   MKDSRVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+  T  I+E      +P+I +TA +   D+      G + YI+KP +    +  +K  
Sbjct: 61  DGIVTTSLIRE---FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K++I+ED +   +     ++  GY      +G E L+   +  PD+I++DI L  I+G
Sbjct: 3   SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EI ++I++ S    +P+I VTA     D       G + Y++KP ++   +  I+  + 
Sbjct: 63  IEICRKIRQHS---NVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALR 119

Query: 122 EA 123
           ++
Sbjct: 120 KS 121


>gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 241

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++VED         D +E  GY      +G  ALE      PD++++D+ L  ++
Sbjct: 1   MKPKVLLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAAWNPDLVVLDVMLPGLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ +Q++   +    PV+ ++A     +     + G + Y++KP  L  F+  +K  +
Sbjct: 61  GLQVCRQMRAQGQT--TPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|254411332|ref|ZP_05025109.1| hypothetical protein MC7420_1823 [Microcoleus chthonoplastes PCC
           7420]
 gi|196181833|gb|EDX76820.1| hypothetical protein MC7420_1823 [Microcoleus chthonoplastes PCC
           7420]
          Length = 121

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 70/120 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++VED+    ++  DL++ SG       +G+EALE   Q +PDV+++DI +  ++G
Sbjct: 1   MSTVLVVEDSLAQRQMISDLLKGSGLTVSVASDGVEALEHILQSRPDVVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + Q +PV+  ++   + D     K G +AYI+KP   +  + T+K+ + 
Sbjct: 61  YEVCRRLKADPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELIGTVKQLLR 120


>gi|170723373|ref|YP_001751061.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169761376|gb|ACA74692.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 241

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 54/121 (44%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++ +D++   +L +  +  +G+      +G            D++I+D+ L +  G 
Sbjct: 6   KSILMADDDQEIRELLQTYLSRAGFQVHAEADGQGFRHALENTHCDLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++      +P+I +TA + + D     + G + Y+ KP S       IK  +  
Sbjct: 66  SLCRWVRQHPRQSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D +    L +D +E  G   L   NG E +E A++  PD+I++DI + +I G
Sbjct: 1   MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+   +    P++ ++A   + D  +    G + Y+ KP SL   +  I  ++ 
Sbjct: 60  YEVCRKIR---DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
 gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED E  ++L    +  +G+  +++ +   A ++ +++ PD+II+D  L  + 
Sbjct: 1   MAASILIVEDEESILELIAINLHQAGFNPIRSLSAEFAEKIIQKNLPDLIILDWMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I+  S  ++IP+I +TA + + ++ +    G + Y++KP S    +  IK  +
Sbjct: 61  GVEFAKRIRGSSTTRKIPIIMLTAKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + V++ ED+          +   GY      +G+EAL  A +  PDV+++D+ +  I G
Sbjct: 12  TQTVLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVMMPGIDG 71

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + ++ + +    P++ +TA     D       G + Y+ KP  +      ++  + 
Sbjct: 72  LQVCRVLRAEGD--RTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 129

Query: 122 E 122
            
Sbjct: 130 R 130


>gi|84496310|ref|ZP_00995164.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84383078|gb|EAP98959.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 238

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D    ++     +    Y      +G  AL+      PD++I+D+ L +I G
Sbjct: 3   MSRILVVDDEPHLVRTLAINLRARDYEVETAGDGRSALQAVHDQLPDLVILDLGLPDIDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ ++I+E     + PVI ++A A   D+      G + Y++KP ++   +  I+  + 
Sbjct: 63  VDVLRRIRE---TSQTPVIVLSARADSIDKVEALDLGADDYVTKPFAVDELLARIRVALR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
 gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
          Length = 255

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 28  MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 87

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 88  VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 147

Query: 119 YIGEA 123
            +  A
Sbjct: 148 MLRRA 152


>gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+I+ED+    +  R  +   G+       G + LEL R  +PD +I+D+ L  + G
Sbjct: 1   MPRVLIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLMLPGMPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+      ++P+I  TA     D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  LEVCRRIRAH---HQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
 gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
          Length = 241

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+M+V+D  +  ++ +  +   GY  +   +G EA+++  + +P ++++D+ + ++ G  
Sbjct: 9   KIMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKEQPQLVVLDVMMPKLDGYS 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ +S   ++P+I +TA     D     + G + YI KP S       I+     +
Sbjct: 69  VCQQLRRES---DVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRS 125


>gi|75675624|ref|YP_318045.1| response regulator PleD [Nitrobacter winogradskyi Nb-255]
 gi|74420494|gb|ABA04693.1| response regulator receiver modulated diguanylate cyclase
           [Nitrobacter winogradskyi Nb-255]
          Length = 457

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N++L    +    +  L   NG +ALE   + + D+I++D+ + ++ 
Sbjct: 1   MSARVLVVDDVPANVRLLEARLSAEYFDVLTASNGAQALETCARAECDIILLDVMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPV+ +TA     D  R  + G + +++KP+S  +    ++   
Sbjct: 61  GFEVCRRLKANPATHFIPVVMITALDNPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    ++    +      +  EAL  A +   D++I+ + L+   GL 
Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAVDVEADPSEALFRAAESNYDLLIVSLGLENFDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114
           +  Q +     + +P++AV A A       R  + G   Y+ +PI  +  + 
Sbjct: 216 LCSQARSLERTRHVPILAV-ADADGSPRLLRGLEIGINDYLLRPIDRNELLA 266


>gi|262044459|ref|ZP_06017518.1| OmpR family transcriptional regulatory protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|330010607|ref|ZP_08306835.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
 gi|259038189|gb|EEW39401.1| OmpR family transcriptional regulatory protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328534457|gb|EGF61050.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
          Length = 252

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L  D +E SGY A    NG     + + H+ D+I++DI +    GL 
Sbjct: 12  HILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLT 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ + + Q+IPV+ +TA     D     + G + Y+ KP      +  IK  +  
Sbjct: 72  LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 129


>gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21]
 gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 59/121 (48%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+++ED +   +L    +E  GY  L   +G   L  AR+ KPD+I++D+ L  + G
Sbjct: 1   MPTVLVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARRCKPDLILLDLMLPGMMG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +K       IPVI +TA   + D     + G + Y+ KP S    M  ++  + 
Sbjct: 61  TEVCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA
           [Mycobacterium avium 104]
 gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104]
          Length = 228

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    +  R  +  +GY      +G+EAL++    +PD +++D+ +  + GLE
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +  
Sbjct: 62  VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118


>gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis
            NIES-39]
          Length = 1778

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 71/116 (61%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++I EDNE N+      +   GY  +  ++G +A++LA+   P++I+MDIQ+  I GLE 
Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSESPNLILMDIQMPGIDGLEA 1720

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +I++ + + ++P+IA+TA AM GD E+  + G   Y++KP+ L      I++ +
Sbjct: 1721 INRIRQITTMSQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1776


>gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
 gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
          Length = 224

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I+ED+    ++    ++  G+      +G E L  A+ +  D+I++D+ L +++
Sbjct: 1   MKEKILIIEDDVKIARIIEVELKFEGFDIQIENDGKEGLLAAKYNHFDLILLDVMLPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I+EDS   ++P+I +TA     D+      G + YI+KP S    +  +K  +
Sbjct: 61  GFEVCKRIREDS---DVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|299135153|ref|ZP_07028344.1| response regulator receiver modulated diguanylate cyclase [Afipia
           sp. 1NLS2]
 gi|298590130|gb|EFI50334.1| response regulator receiver modulated diguanylate cyclase [Afipia
           sp. 1NLS2]
          Length = 458

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    +    +  +    G +ALE+ ++ + D++++D+ + +I 
Sbjct: 1   MSARVLVVDDVPANVKLLEARLSAEYFDVVTANCGTQALEICQRAECDIVLLDVMMPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPV+ VTA     D  R    G + +++KP+S  + +  ++   
Sbjct: 61  GFEVCRRLKSNPRTHFIPVVMVTALDSPSDRVRGLDAGADDFLTKPVSDVVLIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D   + +    ++    +      N  EAL  A ++  D++I+ + L+   GL 
Sbjct: 157 KILLVDDRPSSYERLAPVLAEE-HAVDVEPNPSEALFHAAENNYDLLIVSLNLENYDGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
           +  Q++     + +P++A++         R  + G   Y+ +P+  +  + 
Sbjct: 216 LCSQVRSLERTRSVPLLALSEADNNTQLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1175

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    + +  +E   Y+ L   NG EAL +A    PD+I++D+ + ++ G E
Sbjct: 8   TILVVDDTQTIRHITKKTLEADNYVVLAASNGPEALSIAADKIPDLILLDVMMPDMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++K D   ++IPV+ +TA   K  E +    G E ++ KP    + +  + + +  
Sbjct: 68  VCSRLKADICTRDIPVVFITASGNKEHEVKGLDLGAEDFVHKPFHEGVLLARVGQILRR 126



 Score =  105 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 6/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           + +IV+DN  N ++ R    + G    +  NG  AL +  Q         + ++D+Q+ +
Sbjct: 673 RTLIVDDNSTNREILRVRFGSWGMRPGEAANGSAALSMLHQAKAENDPFVLAVLDMQMPD 732

Query: 59  ISGLEITKQIKEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + G  + + IKED +L++  +I + +A    GD  R+ + G ++ ++KP+  S    +++
Sbjct: 733 MDGETLGRNIKEDGQLKDTRLIMMSSATGQTGDSRRLHETGFDSILNKPVLPSELYASLE 792

Query: 118 KYIGE 122
           K +  
Sbjct: 793 KILAR 797



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ EDN +N ++   +++  G  A    NG EAL        D+++MD+Q+ E+ GL
Sbjct: 825 ARILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALENIPYDLVLMDVQMPEMGGL 884

Query: 63  EITKQIKEDSELQEIPV 79
           E T++I+        PV
Sbjct: 885 EATRRIRSMEHG--TPV 899



 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 76   EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             IP+IA+TA AM+ D ER  + G + Y +KP++       ++K++ +
Sbjct: 966  RIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWLSK 1012


>gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
 gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L +D +E SG+      +G   L+ A +   D+ I+D+ L  + G
Sbjct: 1   MSKILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDYDLFILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I +Q++    ++  P+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FDICRQVR---NVKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 222

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+        D +E SGY+ +   NG EALEL  +H+P +I+ DI + E+ 
Sbjct: 1   MPLTLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKHQPHLIVTDIAMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+++     + +PVI +TA     +  R  + GC+ Y+ KP  L      I+  +
Sbjct: 61  GFELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELDELGVVIRALL 120

Query: 121 GEA 123
             +
Sbjct: 121 ERS 123


>gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
          Length = 1770

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 76/120 (63%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1424 KRVLLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLSQQSYDLVLMDCQMPVMDGY 1483

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T  I++  EL  IPVIA+TA AM GD+E   + G   +I+KPI ++I  +T+ KY+G+
Sbjct: 1484 QATMAIRQRPELAHIPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNILYQTLLKYLGD 1543



 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + R  +E+ G+     R G EA+    QH+  V ++D ++  + GLE 
Sbjct: 1284 VLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCMQHEYAVALIDWKMPSMDGLEA 1343

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +QI++ ++     ++ V+A A      +I + G   YISKPIS S  ++ I   +G A
Sbjct: 1344 ARQIQQQAKAAP-RILMVSAHANHEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRA 1401


>gi|306819902|ref|ZP_07453555.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552059|gb|EFM39997.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 244

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+ IV+D +   +L +  ++  GY      N  +ALE  +  +PD++I+DI ++E+ G
Sbjct: 11  MKKIYIVDDEQRIRELIQMYLKKEGYDTKIFSNAKDALEEFKNQEPDLMILDIMMREMDG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I++     ++P+I V+A + + D     + G + Y++KP S    M  +K  + 
Sbjct: 71  LELCREIRK---TSDVPIIFVSARSEELDRILGLELGADDYLAKPFSPRELMVRVKTILK 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
            AHT2]
 gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
            AHT2]
          Length = 1295

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E +G   +  R+G EAL    +H   D+++MDI + E+ G
Sbjct: 1175 RTVLLVDDDMRNIFALSSVLEEAGLEIVVARDGREALAKLAEHPEIDLVLMDIMMPEMDG 1234

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E   +I+ D    ++P+IA+TA AM+GD+++    G   Y++KP+     +  ++ ++
Sbjct: 1235 YEAMGEIRRDPARAKLPIIALTAKAMRGDKDKCLAAGANDYLAKPVDPERLLSLLRVWL 1293



 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++I+ED+     L  +L    GY  L   +G   L LA   +P  II+D+ L  ISG 
Sbjct: 906  KSLLIIEDDSSFASLLLELARDKGYKGLVAEDGETGLHLADYFRPSGIILDMGLPGISGR 965

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME---TIKKY 119
            E+ +++K++ E + IPV  ++A +   +E    + G   +++KP+S+    +    I+K 
Sbjct: 966  EVMERLKKNPETRHIPVHFISA-SDPSNEV--MQLGAVGFLTKPVSVDKLEQVFGRIEKL 1022



 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K++++VED+ +  +  R ++   G    ++  +G EA  L      D +I+D+ L ++SG
Sbjct: 1028 KRLLVVEDDMVQRQAIRAMVGEGGDIEVVEAADGEEAHRLLGTEHFDCVILDLGLGDMSG 1087

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
             ++  +IK+D  + ++PV+  T   +  DEE   +   ++ I K
Sbjct: 1088 FDLLTKIKDDQRISQVPVVIYTGREISPDEEERLQQYADSIIIK 1131


>gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 719

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED+     L R  +E  GYI     +G  AL+   +   D +I+D+ L  + G
Sbjct: 1   MKQILLVEDDHDIAALLRLNLEDEGYIITHEPDGGNALQCLEKQPWDAVILDLMLPNVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++    + +PVI ++A + + D     + G + Y++KP S+   +  IK    
Sbjct: 61  LEICRRIRQI--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
 gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
          Length = 238

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++D+ +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  +
Sbjct: 66  VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRS 122


>gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D+E   ++    +++SGY      NG EA E   ++ PD++++D+ +  I G++
Sbjct: 7   KVLIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMIPYIDGID 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K I++    +E PVI +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 67  ILKWIRKQ---KETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRR 122


>gi|67924013|ref|ZP_00517465.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67854153|gb|EAM49460.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 377

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   GY   +  NG  AL    Q  PD+I++DI +  ++G E+
Sbjct: 8   ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTICQVPPDLILLDINMPSMNGYEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED + ++IPVI ++A     D+ +    G   YISKP      +  I+  +
Sbjct: 68  CQQLKEDVKTKDIPVIFISALDDVLDKVKAFDVGGVDYISKPFQTEEVIARIENQL 123


>gi|186685999|ref|YP_001869195.1| response regulator receiver, CheY [Nostoc punctiforme PCC 73102]
 gi|186468451|gb|ACC84252.1| response regulator receiver, CheY [Nostoc punctiforme PCC 73102]
          Length = 121

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED+    ++  DL++ +G       +G+EALE  +   PD++++DI +  ++G
Sbjct: 1   MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQVAPPDLVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + Q +PV+  ++   + D     K G +AYI+KP   +  + T+K+ + 
Sbjct: 61  YEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120


>gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 223

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I+ED +   +     ++   +  +   +G   LELA   + D I++D+ L +++
Sbjct: 1   MKKKILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVMLPQLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++      +P++ +TA     D       G + Y+ KP ++   +  I+  +
Sbjct: 61  GIEVCRRIRK---TSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 228

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IVED+    +L RD +E +G+      +G+   + A   K D++++DI L  + G
Sbjct: 1   MEKILIVEDDLDIAELERDYLEANGFAVAIAGDGLAGEKAALDEKVDLVLLDIMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+E    + IP++ V+A     D+ R    G + YI KP S    +  +K ++ 
Sbjct: 61  FQVCRRIREK---RNIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHLQ 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 235

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED E        L+   G+  +   +G  ALE    +  D++++D+ L  +SG
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ KQ++       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 227

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++E+  Y      +G +AL   R+  P ++++D+ L  + 
Sbjct: 1   MTTRILVVDDDTALAEMIGIMLESEHYEPFFCADGAQALATFREVNPHLVLLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI + I+ +S   ++PVI +TA     D     + G + Y++KP      +  ++  +
Sbjct: 61  GVEICRLIRAES---DVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|218890978|ref|YP_002439844.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218771203|emb|CAW26968.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 786

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 63/116 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + L+   G       +G+ AL++  +H  D+++MD  +  + G E
Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 723

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             +QI++      +P+IA+TA A+  + ER R  G + Y++KP         + ++
Sbjct: 724 AARQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779


>gi|170744710|ref|YP_001773365.1| response regulator receiver protein [Methylobacterium sp. 4-46]
 gi|168198984|gb|ACA20931.1| response regulator receiver protein [Methylobacterium sp. 4-46]
          Length = 126

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/122 (69%), Positives = 107/122 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  L+T NG+EA+ELAR+H+PD+I+MDIQL E+S
Sbjct: 1   MTKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARRHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IKED EL+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T++ Y+
Sbjct: 61  GLEVTKWIKEDDELKSIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRTYL 120

Query: 121 GE 122
           G+
Sbjct: 121 GD 122


>gi|156740320|ref|YP_001430449.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus castenholzii DSM 13941]
 gi|156231648|gb|ABU56431.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus castenholzii DSM 13941]
          Length = 331

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++ +DN    +     +E  GY+AL  RNG EAL LA    PD++++D+ + +  
Sbjct: 1   MAAKILVADDNPAMREAIVRFVEAEGYVALAARNGREALNLALAELPDLVLLDVTMPDYD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D     IPV  +T         R  + G + +++KP    +    I+  +
Sbjct: 61  GYEVCRRLKADPRTALIPVTMLTVLDAPEHRWRGIEAGADDFLTKPFDERLLRARIQSQL 120

Query: 121 G 121
            
Sbjct: 121 R 121


>gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 241

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQL 56
           + ++++V+D          L++  GY      +G  AL   +Q        D++I+D  L
Sbjct: 1   MSQILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWML 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            ++SG+E+ ++++  S+L   PV+ +TA     D  +    G + Y+ KP  L   +  +
Sbjct: 61  PKLSGIEVCQELRSQSQL--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARV 118

Query: 117 KKYIGEA 123
           +  +  +
Sbjct: 119 RALLRRS 125


>gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 230

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+K K++I+ED +   +  +   E  GY    T +G+  L+ A +   D++++DI L  I
Sbjct: 1   MMKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ K+I+E S   +IPVI +TA     D+      G + Y++KP S+      ++  
Sbjct: 61  DGFEVLKKIREHS---DIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAA 117

Query: 120 IGE 122
           + +
Sbjct: 118 LRK 120


>gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    +  R  +  +GY      +G+EAL++    +PD +++D+ +  + GLE
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPRLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +  
Sbjct: 62  VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118


>gi|284037394|ref|YP_003387324.1| Fis family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816687|gb|ADB38525.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Spirosoma linguale DSM 74]
          Length = 488

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 62/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D   N+ +  + +  SGY  L  R+G  A+E A    PD+I++DI +  + G E
Sbjct: 12  TILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQATFALPDLILLDIMMPGMDGFE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K++   Q IPV+ +TA +   D+      G   YI+KP  L   +  I  ++
Sbjct: 72  TCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTHL 128


>gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 241

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D      L    +  +G+  +   +G EALE   + +PD++++D+ L ++ G 
Sbjct: 12  ARLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++E       PV+ +TA     D       G + Y++KP SL   +  I+  +  
Sbjct: 72  TVTRRLRERGV--RTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRR 129

Query: 123 A 123
           +
Sbjct: 130 S 130


>gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 227

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K ++V+D +L +K     +   G+      +G EA+   +    DV+I+D+ L E +
Sbjct: 1   MKIKALVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVMLPEYT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++E      +P+I +TA     D+    + G + YI+KP ++      IK  +
Sbjct: 61  GLEVCQIVRE---FSNVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|197117616|ref|YP_002138043.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197086976|gb|ACH38247.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
          Length = 349

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 71/118 (60%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D   N+++   +++ + Y  L  +NG +A+ + +Q  PD+I++DI +  + G 
Sbjct: 10  QKILIVDDTPANIEILYSILKGA-YDVLFAKNGGDAIRIVQQQLPDLILLDIMMPGMDGY 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++ + +K D    +IP+I VTA + + DE    + G   Y++KPIS  I +  ++ ++
Sbjct: 69  QVCRVLKADPLTAKIPIIFVTAMSKEEDEAMGLQSGAIDYLTKPISPPIVLARVRNHL 126


>gi|300866841|ref|ZP_07111518.1| putative Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
 gi|300335151|emb|CBN56678.1| putative Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
          Length = 320

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 70/116 (60%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N++L   ++E+ GYI  ++ NG  AL+ A +  PD+II+DI + +++G E+
Sbjct: 13  ILIVDDNPDNLRLLSKILESQGYIVRKSLNGKMALQAAYRDPPDLIILDINMPDMNGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KE    Q++P+I ++A     D+ R  + G   YI+KP      +  ++  +
Sbjct: 73  CQQLKESEATQDLPIIFISALDRVNDKVRAFEMGAVDYITKPFQEQEVLMRVRNQL 128


>gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
 gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
          Length = 230

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+DNE    +     + +GY  +    G E L     +KPDVI++D+ L +I G
Sbjct: 1   MKTILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVMLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I++   +  +P++ +TA     D       G + YI KP S    M  I+  + 
Sbjct: 61  FEVCQCIRK---VSRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|220904004|ref|YP_002479316.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868303|gb|ACL48638.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 259

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VEDNE  +      +E  GY     RNG   LE+A     D I++D+ L  + G+ + 
Sbjct: 6   LLVEDNEDILANLYAYLEPLGYTLDCARNGKAGLEMALGRGFDCIVLDVMLPGMDGISLC 65

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++++++  +   PVI +TA     D     + G + Y+ KP +L      I+  +  
Sbjct: 66  RRLRQEYRVS-TPVIMLTARDAVADRVAGLEAGADDYLVKPFALKELEARIRALLRR 121


>gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +  +   +D  E  GY  +   NG EA+E   +   D+I++DI +  I 
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+   +    P+I ++A   + D+ +    G + YI KP S+      ++ ++
Sbjct: 60  GFQVCQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED  L     R  +E  GY  L   +G+  L+LAR  +PD++I+D+ L ++ G
Sbjct: 1   MSTILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAEQPDLLILDVMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++ ++    IP++ +TA   + D     + G + Y+ KP SL   +  ++  + 
Sbjct: 61  FSVCRILRRET---NIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 245

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++IV+DN    ++ R L++  GY   + RNGMEALE+  Q   D+II+DI +  ++G
Sbjct: 3   TARIIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLEQGMFDLIILDIMMPGMNG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   +I++ S     P++ ++A   + D+      G + Y+ KP S +  +   K  I 
Sbjct: 63  YQTCLEIRKQS---NAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 250

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++ ED+E   +L R  +E  G       +G  A++ AR  +PD+I++D+ + ++ 
Sbjct: 1   MSARILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + ++ DS+   +P++ +TA A + D       G + Y++KP S       ++  +
Sbjct: 61  GLDVCRILRTDSQ---VPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|257413909|ref|ZP_04744629.2| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257201844|gb|EEV00129.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 234

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++V+D +    + R   E  GY   +  +GMEA+E+ R+   D+II+D+ + E+ G
Sbjct: 11  MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++I++    +EIPVI ++A   + D+    + G + Y+ KP S    M  +K  I 
Sbjct: 71  FSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVIS 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|209546661|ref|YP_002278579.1| two component winged helix family transcriptional regulator
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537905|gb|ACI57839.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 234

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D      +    +E +G I+   RNG EA+   R+ K D+II+DI + ++ 
Sbjct: 1   MAPRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ +QI++      +P++ ++A   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLDVCRQIRK---TSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK++I++D    + L   +++  GY   Q R+G   L      +PD+II+DI L +I+G
Sbjct: 3   TKKILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIMLPDING 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K ++ +S    IP++ +TA +   D+    + G + Y++KP      +  +K  + 
Sbjct: 63  NEVCKMVRSNS---SIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|304313326|ref|YP_003812924.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301799059|emb|CBL47302.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1224

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
            ++V++V+D+  N+     ++E SG+      NG EAL++   +   D+++MDI + E+ G
Sbjct: 1103 QRVLLVDDDIRNLYSLSAVLEDSGWEVRTAANGREALDILSSEGAFDLVLMDIMMPEMDG 1162

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+  +  +++P+IA+TA AM+ D  +    G   Y+SKP+  S     +K ++
Sbjct: 1163 FEAMRRIRGQAAFEKMPIIALTAKAMRDDRAQCVAAGANDYLSKPVDPSKLKAIVKMWL 1221



 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+     + +DL    G+ A    +   A     +  P  I++D+ L +  G E+ 
Sbjct: 832 LIIEDHPEFSTVLKDLATEFGFEAACVHSAAAAHRYLERWTPASIVLDLGLPDSPGEELL 891

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             +K      +IPV  ++      +       G   +I+KP      ME +
Sbjct: 892 SWLKAQPHTAQIPVHVISGK---ENVVMDELAGASEFIAKPFGRDR-MERL 938



 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH------KPDVIIMDIQLQE 58
            V+I+ED+E+   L                + +EA E               +++D+ L +
Sbjct: 954  VLIIEDDEVQRDLIEVSFREQEIACDLASSAVEAREYLAAMEQTPARHYGAMVVDLDLPD 1013

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFA 86
              G ++  ++ + +    IP+I  TA  
Sbjct: 1014 CDGFQLVDELHQSTNGS-IPIIVYTARD 1040


>gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob
           [Alicycliphilus denitrificans BC]
 gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus
           denitrificans K601]
 gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alicycliphilus denitrificans BC]
 gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 233

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K    V++VED     +L    +  +G+  +   +   A        PDVI++D  L  
Sbjct: 1   MKPFPHVLVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDAVLPDVILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SGL++ ++ +  +  + +P++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  MSGLQLARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 242

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 57/119 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+  +   +G +  E A+   PD+II D+ +   +G +
Sbjct: 16  RILLVDDEPGLRTAVKTFLEDEGFEIIIAVDGEDGWEKAQTIFPDLIISDVMMPRANGYD 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+ED +L   PVI +TA  M  D       G + YISKP         +K  I  
Sbjct: 76  LLKKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134


>gi|317405401|gb|EFV85716.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 744

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++  +DN    +  R L+  + Y      +G  AL  ARQ  PD++I DI +  + GL 
Sbjct: 225 RILCADDNADLREYLRSLL-AADYDVRIAADGATALRSARQDPPDLVITDIMMPGMDGLT 283

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ D+  + +PVI ++A A +         G + Y+ KP S +     +  ++  A
Sbjct: 284 LLQALRGDARTRTVPVILLSARAGQEARVEGLDAGADDYLVKPFSPAELQARVGAHLRLA 343



 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 57/119 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN  +      +++  G      R+G +AL +  +  P V+++DI +  + G E
Sbjct: 604 RILVVDDNTDSADTTAMVLQAFGAQVGVARDGRQALAMLDEFAPAVMLVDIGMPGMDGHE 663

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     Q + +IA+T +    D     + G + ++ KP+  +   + +      
Sbjct: 664 VARRVRSAPSGQGVVLIAMTGWGQDEDRRHSHEAGFDHHLVKPVDFAALEQLLVSLARR 722


>gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 255

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +  ++L    +  +G   +  R+G EAL    + +P VII+D+ L +  G  +
Sbjct: 33  VLVVDDEDALLELVAYNLRRNGMEPVLARDGAEALRCIEERRPQVIILDVMLPDTDGFTL 92

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++E     + P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 93  CRHLRERGV--QTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRR 148


>gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1]
 gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94]
 gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 228

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 1   MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ISG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 61  ISGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120

Query: 119 YIGEA 123
            +  A
Sbjct: 121 MLRRA 125


>gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K KV+++ED    + +    +E  G+      +G + L  A+   PD++I+D+ L  I
Sbjct: 1   MAKPKVLLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQAMTPDLVILDLMLPVI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ +Q++ D +L    ++ +TA A + DE      G + Y++KP  +   +  IK  
Sbjct: 61  DGLEVCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKAL 120

Query: 120 IGEA 123
           +  +
Sbjct: 121 LRRS 124


>gi|150390837|ref|YP_001320886.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950699|gb|ABR49227.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 68/119 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +  ++L R  +  SG+  +   NG++A+E+     PD+I++D+ L +I GLE
Sbjct: 5   KLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ D  + + P+I +TA + + D+      G + YI+KP  L      ++  +  
Sbjct: 65  VCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRR 123


>gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium abscessus ATCC 19977]
 gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response
           transcriptional regulatory protein) [Mycobacterium
           abscessus]
          Length = 230

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    +  R  +  +GY      +G++AL +    +PD +++D+ + ++ 
Sbjct: 1   MPVRILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +
Sbjct: 61  GLEVCRRLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2]
 gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2]
 gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7]
          Length = 236

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I +D +    L +  +E   Y      NG EAL L  +++ +++I+D+ + ++ G+E
Sbjct: 5   RILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLMMPKVDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    IP++ +TA   + D+      G + YI+KP S++  +  +K  +  
Sbjct: 65  VCRRLRNKT---NIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRR 120


>gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 226

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E  + L    +  +GY  ++ R+G EA++  R+H  D++++D+ + E+ G
Sbjct: 1   MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I+       +P++ VTA     D  +  K G + Y++KP   +  +  I+  + 
Sbjct: 61  WETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 253

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-------DVIIMDIQL 56
           ++++VED EL  ++    +E  GY  +   +G  A+E  +   P       D++I+D+ L
Sbjct: 23  RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML 82

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I+GL+I + ++       +P++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 83  PQINGLDICRLLRHQGN--PVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 140

Query: 117 KKYIGE 122
           +  +  
Sbjct: 141 RALLRR 146


>gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D +L +K  +  +E          +G EA+E  + +  D++++DI +   +G
Sbjct: 1   MKKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDYDIVLLDIMIPVYTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + ++E      +P+I +TA     D+    + G + YI+KP ++      IK  + 
Sbjct: 61  IEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|268316158|ref|YP_003289877.1| response regulator receiver modulated serine phosphatase
           [Rhodothermus marinus DSM 4252]
 gi|262333692|gb|ACY47489.1| response regulator receiver modulated serine phosphatase
           [Rhodothermus marinus DSM 4252]
          Length = 371

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           + +  +++VED     +L    +    Y      NG EAL+L  +  PD+II DI + ++
Sbjct: 1   MARYSILVVEDEHTLRRLLEYRLSKY-YRVRSAANGEEALQLVLEEIPDLIISDIMMPKM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + + ++   E + IP I +TA A +    R  + G + YI+KP  +   +  I++ 
Sbjct: 60  DGFALQQALQNRKETRAIPFIFLTAKADEHSRMRGMRMGVDDYITKPFDIDQLLARIERL 119

Query: 120 IGE 122
           +  
Sbjct: 120 LER 122


>gi|262195489|ref|YP_003266698.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262078836|gb|ACY14805.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 406

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D+  N++L    +           +G + +E AR+  P ++++DI L  I GL
Sbjct: 21  QRVLVVDDDPANLRLVEAYLADLDVEVSTALSGEQGVEQAREEPPHLVLLDIMLPGIDGL 80

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E  ++I+     +++PVI +TA +    +      G   Y++KP+     +  ++ ++ 
Sbjct: 81  EACRRIRAAPRTRDVPVIFMTALSDHARKLEGFGVGGVDYVTKPLDRPELLARVRTHLR 139


>gi|281421933|ref|ZP_06252932.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
           DSM 18205]
 gi|281403987|gb|EFB34667.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
           DSM 18205]
          Length = 231

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D +   ++ +  +ET GY      +  EALE+      D++++D+ +  +SG
Sbjct: 5   MKRILVVDDEQDLCEILKFNLETEGYEVETANSAEEALEM-DIASFDLLLLDVMMGGMSG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ+K +     +P+I +TA   + D       G + YISKP S+   M  ++  + 
Sbjct: 64  FQLAKQLKGNPMTANVPIIFLTARDTENDTVTGFNIGADDYISKPFSIREVMVRVRAVLR 123

Query: 122 E 122
            
Sbjct: 124 R 124


>gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 227

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+        D +E SGY  +   +G EAL +   + PD+I+ DI +  ++
Sbjct: 1   MPLTILVVDDDLGTRLSISDYLELSGYSVVTANDGQEALAMVDNYHPDLIVTDIIMPRMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++    + +PVI +TA     +     + GC+ Y+ KP  L      I+  +
Sbjct: 61  GYELVRRVRQQPAFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 120

Query: 121 GEA 123
             +
Sbjct: 121 ERS 123


>gi|28871510|ref|NP_794129.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|66047297|ref|YP_237138.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|213970324|ref|ZP_03398454.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|257486388|ref|ZP_05640429.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625007|ref|ZP_06457961.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647066|ref|ZP_06478409.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677749|ref|ZP_06498639.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|298488561|ref|ZP_07006591.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|301385476|ref|ZP_07233894.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato Max13]
 gi|302062994|ref|ZP_07254535.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato K40]
 gi|302135278|ref|ZP_07261268.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|302189741|ref|ZP_07266414.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|28854761|gb|AAO57824.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|63258004|gb|AAY39100.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|213924996|gb|EEB58561.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|298156902|gb|EFH97992.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322421|gb|EFW78514.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330111|gb|EFW86098.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868739|gb|EGH03448.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330877907|gb|EGH12056.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330888541|gb|EGH21202.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330895192|gb|EGH27530.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330943745|gb|EGH46029.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330950189|gb|EGH50449.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330966157|gb|EGH66417.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|330973353|gb|EGH73419.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330989414|gb|EGH87517.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009877|gb|EGH89933.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331017964|gb|EGH98020.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 227

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120


>gi|288959503|ref|YP_003449844.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288911811|dbj|BAI73300.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 253

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L    +   GY     R+G E +      + D+I++D+ L    GL 
Sbjct: 6   HLLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARVDLIVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   +  + PVI +TA   + D     + G + Y++KP S    +  IK  +  
Sbjct: 66  LCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKAVLRR 124


>gi|72383330|ref|YP_292685.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003180|gb|AAZ58982.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 265

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++    L    +E +G+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D     IP++ +TA     D+      G + YI+KP  L      IK  +  
Sbjct: 65  CQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRR 122


>gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 239

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 13  ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVMMPGMDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 73  GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130

Query: 123 A 123
           A
Sbjct: 131 A 131


>gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 226

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V+I+ED +   +L    +E  GY  +   +G E LE   + +PD+I++D+ L  + G
Sbjct: 1   MQTVLIIEDEKDLAELLSFNLEREGYKTVIALDGAEGLEAVERVQPDLILLDLMLPGMFG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K +K+  +   IPV+ +TA   + D+    + G + Y+ KP S    M  +K  + 
Sbjct: 61  TDVCKTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX]
          Length = 232

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V+I +D+    +     ++  GY      +G+E L        D++I+D+ +  + GL
Sbjct: 5   RTVLIADDDRAIRESLERALQLEGYQTRTAADGVETLAAVHSDPVDLLILDVMMPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++ + +    P++ +TA     D       G + Y+ KP  L   +  I+  +  
Sbjct: 65  GVCRVLRAEGD--RTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRR 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|295690169|ref|YP_003593862.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter segnis ATCC 21756]
 gi|295432072|gb|ADG11244.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter segnis ATCC 21756]
          Length = 454

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N++L    +    Y      +G  A+ +A++  PD+I++D+ +  I 
Sbjct: 1   MSARILVVDDIEANVRLLEAKLAAEYYEVSTAMDGQTAINMAQRDPPDIILLDVMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++KED   + IPV+ +TA   + D  +  + G   +++KPI   +    ++   
Sbjct: 61  GFTVCRKLKEDPATRHIPVVMITALDGRADRIQGLEAGASDFLTKPIDDVMLFARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+DNE   +     +  + +  +   +   A  ++     D++I++   +   GL 
Sbjct: 155 RVLVVDDNERQAERLAGEL-AADHRPVVETDPETA-RVSASGPVDLVIVNAAAKGFDGLR 212

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T  ++ D   + +PV+A+     +    +  + G    +++P+         K  I  
Sbjct: 213 FTAALRSDERTRHLPVLALVDPDDRARMVKALEIGVNDILTRPVDPQELSARAKTQIQR 271


>gi|307153375|ref|YP_003888759.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7822]
 gi|306983603|gb|ADN15484.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7822]
          Length = 381

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 57/120 (47%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D+    KL    +  S Y  +   NG E LE A Q+ P +II D  +  + G
Sbjct: 1   MAQILIIDDDLAIQKLLSKSLMRSQYQVIVASNGNEGLEKALQYCPALIICDWLMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +QIK   +L     I +TA     D       G + ++ KPI ++     ++  + 
Sbjct: 61  LEVCRQIKATPKLSTTFFILLTAQGSLNDRIMGLDAGADDFLCKPIEINELQARVRAGLR 120


>gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
 gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
          Length = 226

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K++IV+D     KL +D +   GY+  +  +GMEALE+   +    +II+D+ +  + G 
Sbjct: 5   KILIVDDESRMRKLVKDFLGREGYLVREAGDGMEALEIFYEEKDIALIILDVMMPRMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++I++ S+   +P+I +TA + + DE +  + G + YISKP S  I +  ++  +  
Sbjct: 65  QTCREIRQSSQ---VPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|268317057|ref|YP_003290776.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
 gi|262334591|gb|ACY48388.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
          Length = 132

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 66/120 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        R L+E  GY      +G  ALE  R   PD++++D+ L  +SG E
Sbjct: 7   RILIVEDEPSIALSLRFLMEQEGYQVHVVEDGEAALEACRNVPPDLVLLDVMLPGMSGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q+K   + Q I V+ VTA   + D E+ R  G +AYI KP ++   MET++  +  +
Sbjct: 67  VCRQLKAGPDGQAIKVVLVTARGRETDLEKGRAVGADAYIVKPFAIREVMETVRTLLNRS 126


>gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
 gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
          Length = 225

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           ++  G+      +G    EL +Q    ++I+DI + +++G
Sbjct: 1   MAKILLVEDEINIASFIERGLQEFGHEVRVANDGQAGWELVQQEDFQLLILDIIMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ KQ ++    Q  PVI +TA     D       G + Y+ KP S       IK  + 
Sbjct: 61  LQLCKQYRQTYGYQS-PVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQELEARIKALLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
 gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
          Length = 232

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++   YI  +  NG+EALE  ++ + D+ I+D+ L +I 
Sbjct: 1   MNEKILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALECIQKTEIDLAILDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E+      PVI +TA    GD+      G + YI+KP +    +  +K  +
Sbjct: 61  GFRICQKIRENYYF---PVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 235

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E         +   GY  +    G EALE   +H  D++++D+ L  + G
Sbjct: 1   MTRILLVEDEESYRDPLSYQLGREGYDVVTAATGPEALERFAEHGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++ DS   ++PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRRLRLDS---DVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K++IV+D+    +L    +E  G+   +  +G++AL+     K D++I+DI +  + 
Sbjct: 1   MIPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 58/122 (47%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+ IVED      L    +   GY       G   +    Q KPD+I++D+ L +  
Sbjct: 1   MPKKIAIVEDEAELASLIEYNLTRHGYETQILGGGTGTMRALEQAKPDLILLDVMLPDAD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+  S L   PV+ +TA + + D     + G + Y++KP S    +  +K ++
Sbjct: 61  GFELCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 238

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     +G  AL+L  Q+   ++I+D+ + ++
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|298531125|ref|ZP_07018526.1| response regulator receiver modulated serine phosphatase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509148|gb|EFI33053.1| response regulator receiver modulated serine phosphatase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 381

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL-ARQHKPDVIIMDIQL 56
           M++K   +++V+D+ LN+++   +++   Y      +G +AL++      PD+I++DI +
Sbjct: 4   MMQKKYKILVVDDSPLNIRILSSILKDD-YRVQTALHGDKALQIIFGDDPPDLILLDIMM 62

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             I G E+ ++IK D     IPVI VT  +   DE      G   YI+KP    I    +
Sbjct: 63  PGIDGYEVCRRIKADPGTAGIPVIFVTGRSDVEDEAYGLSLGAVDYITKPFHFPIIKARV 122

Query: 117 KKYI 120
           K ++
Sbjct: 123 KNHL 126


>gi|194334444|ref|YP_002016304.1| histidine kinase [Prosthecochloris aestuarii DSM 271]
 gi|194312262|gb|ACF46657.1| histidine kinase [Prosthecochloris aestuarii DSM 271]
          Length = 676

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 74/120 (61%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N K+ + +IE  GY      NG EA+E  +Q +  +++MD+Q+  + G E
Sbjct: 547 RILLVEDNVINQKVAQAMIEKIGYEIDIAVNGEEAVEALQQKQYGLVLMDLQMPVMDGFE 606

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I++   L     +PV+A+TA A + D E   + G + Y+SKP+   + ++ +++++
Sbjct: 607 ATRRIRKFGGLASNARVPVVAMTANATREDRELCLRAGMDDYLSKPVERQVLLDMLQRWL 666


>gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 256

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D           +   GY      +G EAL    + +PD++++DI +  + GL
Sbjct: 17  ARVLVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIMMPRMDGL 76

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++++   +   +PV+ +TA    GD       G + Y++KP  L   +  ++  +
Sbjct: 77  TAVRRMRSRGDT--VPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALL 132


>gi|237736000|ref|ZP_04566481.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421908|gb|EEO36955.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 243

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 70/122 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++++D E  ++L +  +E SGY       G + LE+  +  PD+I++D+ L EI 
Sbjct: 1   MKKKILVIDDEEHILELLKINLEFSGYDTYAYDTGKDVLEIIEKTNPDLILLDLMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI K+I+ + +  +I ++ ++A + + D+    + G + YI+KP SL   +  IK   
Sbjct: 61  GIEICKRIRRNPKFNKIKLLILSAKSDEIDKILCLEIGADDYITKPFSLRELLARIKAIF 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 229

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALAVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRKA 122


>gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G  ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 225

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVYAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes]
          Length = 226

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E  +++    +  + Y   +  +G  ALE   ++ PD++++D+ L +  GL 
Sbjct: 2   KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E   +  +P+I +TA + + D     K G + Y+ KP S    +  I+  +  
Sbjct: 62  VCRKIRE---ISNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVLRR 117


>gi|83814442|ref|YP_446396.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294508333|ref|YP_003572391.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83755836|gb|ABC43949.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294344661|emb|CBH25439.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 236

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 76/120 (63%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D E  + L    +E  G+  L  R+G+EALE AR+H PD+II+DI + ++ G+E
Sbjct: 12  TILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++++D+ L+ IP++ +TA   + D+ +    G + Y+ KP+S+S+ +   K  +  A
Sbjct: 72  VCQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLRSA 131


>gi|28199836|ref|NP_780150.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71275218|ref|ZP_00651505.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899561|ref|ZP_00681717.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170731213|ref|YP_001776646.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682586|ref|YP_001830746.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|28057957|gb|AAO29799.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164027|gb|EAO13742.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71730690|gb|EAO32765.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167966006|gb|ACA13016.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632696|gb|ACB93472.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578868|gb|ADN62837.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 231

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V+IV+D      +    +    + +LQ  +  EA  +     PD+I++D  L   S
Sbjct: 1   MQKRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T++ ++ S  +EIP+I +TA + + D     + G + Y+ KP S    +  I+  +
Sbjct: 61  GLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVM 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|320103510|ref|YP_004179101.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319750792|gb|ADV62552.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1215

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN    ++    +  +G+      +G E L  A     D+I+MD+Q+  + G+E 
Sbjct: 865 ILVVEDNPDLRRVLTAFLTAAGWRVETASDGEEGLAKATTTSFDLILMDLQMPRLDGVEA 924

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++++    +   P++A+TA  + G+ +R  + G + Y++KP+     ++ + +++G
Sbjct: 925 TRRLRARGVV--TPIVALTANDLDGERQRCLEQGFDDYLTKPVGQGELIQRLAQHLG 979


>gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4]
 gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4]
          Length = 232

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60
           K ++IV+D      L    ++  G+   +   G EA+   R +    D+II+DI + ++ 
Sbjct: 5   KTILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDLD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++E      IP++ ++A     D       G + Y++KP      +  +K  +
Sbjct: 65  GFEVCKIVRE---YSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALL 121

Query: 121 GE 122
             
Sbjct: 122 RR 123


>gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1511

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 67/117 (57%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VEDNE+N ++ R+L+  +GY      NG  ALE+ ++   D++ MD+Q+  + GL 
Sbjct: 1172 RLLVVEDNEVNQQVARELLTQAGYTVDVAENGEVALEMVQRTPYDLVFMDMQMPVMDGLA 1231

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T  I++      +P++A+TA AM+ D E+    G   +++KPI        +  +I
Sbjct: 1232 ATIAIRKLPGFAALPIVAMTANAMRQDREKCLAAGMNDFVAKPIDPQALFAVLTAWI 1288



 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQ 57
            ++V++V+DNE    +  D++    +      +G EAL +      +    +V+++D Q+ 
Sbjct: 1025 RRVLVVDDNESARTVLTDMLAAMSFSVEAAASGQEALSVLEAARGKNQPFEVVLLDWQMP 1084

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             + GLE  ++I+   +     ++ VTAF  +        GG EA + KP++ S+  +T+ 
Sbjct: 1085 GMDGLETAERIRAKFDAPPPHLVMVTAFGREEVLRGAEDGGFEAVLLKPVTPSLLFDTLM 1144

Query: 118  KYIG 121
            + +G
Sbjct: 1145 RALG 1148


>gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
 gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
          Length = 244

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L R  +   G+      +G     +  +   D+I++D+ +    GL 
Sbjct: 11  KILVVDDDARIRDLLRRYLTQEGFEVFLAEDGKALTRILLRESVDLIVLDLMMPGEDGLS 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 71  ICRRLRAAND--RTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRR 127


>gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
 gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
          Length = 236

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  K++++VED +   ++    +   GY  ++  +  EA +   +  PD++++D  L   
Sbjct: 10  MSGKRILVVEDEQAIREMIGFALRREGYHFIEAGSVAEAEDAIAEQVPDLMLVDWMLPGT 69

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E  +  K D   Q++PVI +TA   + D+      G + Y+SKP S    +  I+  
Sbjct: 70  SGVEFVRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAV 129

Query: 120 IGE 122
           +  
Sbjct: 130 LRR 132


>gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 224

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D+     + + ++   GY      +G   L++A+++ P+++I+DI +  + 
Sbjct: 1   MGARILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIMMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI ++ + ++    IP++ ++A        +    G + Y+ KP +L   +  ++  +
Sbjct: 61  GWEICRRFRRENF---IPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 229

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+I+ED++   +L RD +E +G+       G+   + A     D+I++DI L    G
Sbjct: 1   MKKVLIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPVDLILLDIMLPGEDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+ +   ++IP++ V+A     D+ R    G + YI KP S +  +  +K +I 
Sbjct: 61  FQVCREIRAE---KDIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|237711528|ref|ZP_04542009.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229454223|gb|EEO59944.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1379

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VED+       + L   + Y  +   NG E + +AR+  PD++I D+ +  ++G E
Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1177

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +KED +   IP+I +TA     +  +  + G + YI KP +  I    +K+ I
Sbjct: 1178 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1234


>gi|229056358|ref|ZP_04195775.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228720977|gb|EEL72521.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 223

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EALEL  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 231

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M +K +++V+D    +++    +E+  Y   Q  NG +A E+  +    +II+D+ L +I
Sbjct: 1   MKQKNILVVDDEPKILEVVASFLESQDYQVFQAENGAKAFEIFEKENISLIILDLMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G EI K+I++      +P+I +TA   + +     + G + YI+KP  L   +  +K  
Sbjct: 61  TGEEICKKIRK---TSRVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 226

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E  +++    +  + Y   +  +G  ALE   ++ PD++++D+ L +  GL 
Sbjct: 2   KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E   +  +P+I +TA + + D     K G + Y+ KP S    +  I+  +  
Sbjct: 62  VCRKIRE---ISNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117


>gi|229015904|ref|ZP_04172869.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022125|ref|ZP_04178677.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739177|gb|EEL89621.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745391|gb|EEL95428.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 223

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EALEL  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 228

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +  +   +D  E  GY  +   NG EA+E   +   D+I++DI +  I 
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+   +    P+I ++A   + D+ +    G + YI KP S+      ++ ++
Sbjct: 60  GFQVCQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42]
 gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY]
 gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
 gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 243

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L R  +   G+  +   +G     +  +   D+I++D+ +    GL 
Sbjct: 10  KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 70  ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126


>gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1831

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 72/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++VEDN++N ++  +L+  +G       NG EA+++A  +  D I+MDIQ+  + G 
Sbjct: 1404 AHVLLVEDNDINQEIATELLNMAGIEVSTACNGQEAVDMAIANSYDAILMDIQMPIMDGY 1463

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+ I+ + + Q IP+IA+TA AM GD E+  + G   +I KPI+     +T+ K+I
Sbjct: 1464 EATRNIRLNPDKQLIPIIAMTANAMSGDREKCIEAGMNEHIPKPINPQEVYQTLAKWI 1521



 Score = 86.7 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQEIS 60
            +IV+D+    ++   L ++ G+      +G EA+E  +      +   +++ D ++ ++ 
Sbjct: 1258 LIVDDSVAAREILFTLSKSLGFRPDLAASGSEAIEKVKLAHSQGNPYKLLLADWKMPQMD 1317

Query: 61   GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL +   I+ D  L   P ++ VTA+      ++      ++ I+KP+S S  ++T+   
Sbjct: 1318 GLALCGAIQGDLSLVNQPKLVIVTAYDRDEMLKQAGTAELDSAITKPVSASTLLDTVMAV 1377

Query: 120  IGE 122
            +G+
Sbjct: 1378 MGK 1380


>gi|160883013|ref|ZP_02064016.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483]
 gi|156111485|gb|EDO13230.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483]
          Length = 1347

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+   +       T+ Y  L   +G   LE A++  PD+II DI +  + G+E+
Sbjct: 1093 ILVVEDNDDIREYIATSFSTN-YRILTAADGKGGLEQAQEFIPDIIISDIMMPVMDGIEL 1151

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             KQIKED     IPVI +TA     D+E   + G ++Y++KP S  +    +   +
Sbjct: 1152 CKQIKEDVCTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLL 1207


>gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
 gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++++ED E    + R  +E +GY      +G+E +    +  PD++++D+ L +++
Sbjct: 1   MPKKILVIEDEESIRNIIRAFLEDAGYTVFVAGDGLEGVNKFHEKNPDLVLLDLMLPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + ++++S     P+I +TA      + +      + YI+KP S+ + M+ I+  +
Sbjct: 61  GFTVCEILRKESRT---PIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
 gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
          Length = 226

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++   G+      +G++A+E  R  +PD++++D+ L   S
Sbjct: 1   MTPKILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++I+ +S    +P++ +TA     D     + G + YI KP      +  I+  +
Sbjct: 61  GIDVCREIRAESR---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 241

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+++ED     +L    +   GY      +G E L+ A Q   D+II+DI L  ++
Sbjct: 1   MSHKVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIMLPGLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI  +++++      P+I +TA   + +  +  K G + YI+KP  ++  +  +   +
Sbjct: 61  GFEILTKLRQNGI--RTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229114181|ref|ZP_04243602.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669201|gb|EEL24622.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 223

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++ ++G+EALEL +Q K D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIQQKKFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 227

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +M+VED     +L RD +E +G+      +G +A    +Q KP ++I+D+ +  + G
Sbjct: 1   MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + YI KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 228

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     ++    +    Y  ++  +   A+    + KP++I++D  +   S
Sbjct: 1   MNNKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRS 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K+  E ++IP+I +TA + + D       G + YI+KP S  + +  I+   
Sbjct: 59  GIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVW 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+D++  ++L    ++ +GY   +  NG EALE+ ++ + D++I+DI + ++ G
Sbjct: 1   MNSILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKEQIDIVILDIMMPDLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+E S     P+I ++A     D+      G + Y++KP +    +  +K  + 
Sbjct: 61  KEVLRKIREKS---STPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++VED     ++  D     G+  ++  +G  ALEL  +H+ D+I++DI L EI 
Sbjct: 1   MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++S    +P+I +TA + + D     + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
 gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
          Length = 221

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     +  ++++ SGY+     +G+ A+E+ R+   D+II+D+ L +I 
Sbjct: 1   MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFREGNFDLIILDVMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S    +P+I +TA   + DE +  +   + YI+KP S+++ ++ ++  +
Sbjct: 61  GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
 gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
 gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
          Length = 228

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  K+ +VED E    L R  +E  GY       G EA    R++ PD++I+D  L  
Sbjct: 1   MSQAPKIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRENVPDLLILDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 61  VSGIELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120

Query: 119 YIGEA 123
            +  +
Sbjct: 121 MLRRS 125


>gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 276

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED E   +  R  +E  G+      +G++ L+LAR    D +++D+ L  + G E
Sbjct: 2   HVLVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGTFDALVLDVMLPGLDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           I ++++ +     +P++ +TA     D  R    G + Y+ KP +L      ++  
Sbjct: 62  ICRRLRAEGN--PVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRAL 115


>gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159]
          Length = 225

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D+   +++ R  +   G+     ++G EAL L  + +PD+I++D  L  + G
Sbjct: 1   MTHVLVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + ++++   +    P++ +TA     D       G + Y+ KP + +  +  I+  + 
Sbjct: 61  LAVVQRLRAAGDG--TPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 245

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED     +L    +  +GY      +  EA E  R   PD++I+D  L   SG
Sbjct: 1   MGRILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAVRDALPDLVILDWMLPGESG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + ++ + D+  +E+ +I +TA + + D  +    G + Y+SKP S +  +  I+  + 
Sbjct: 61  VSLARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|327193856|gb|EGE60733.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli CNPAF512]
          Length = 234

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D      +    +E +G      R+G EA+   R+   D+II+DI + ++ 
Sbjct: 1   MAPRILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIGMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI++      +P++ ++A   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|298384579|ref|ZP_06994139.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298262858|gb|EFI05722.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 1350

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   ++    Y  L  ++G+EAL + + ++ D+II D+ + E+ GLE
Sbjct: 1103 HLLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALNVIKDNEIDIIISDVMMPEMDGLE 1161

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +K + E   IP+I +TA     D       G + YISKP  L I    I  +I
Sbjct: 1162 FCRTLKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFI 1218


>gi|237726015|ref|ZP_04556496.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435823|gb|EEO45900.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1379

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VED+       + L   + Y  +   NG E + +AR+  PD++I D+ +  ++G E
Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1177

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +KED +   IP+I +TA     +  +  + G + YI KP +  I    +K+ I
Sbjct: 1178 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1234


>gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1116

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
            ++IV+D   N+++  + +    Y   Q  + +EALEL R   KPD+I++DI + +++G 
Sbjct: 711 HILIVDDEPTNLQVIVNHLSLQNYAITQASSALEALELIRLGFKPDLILLDIMMPQMTGY 770

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+++E     E+P++ +TA     D       G   Y++KP+  +  +  IK ++  
Sbjct: 771 ELCKKLREQFLPNELPIVLLTAKNQISDLVEGFAVGANDYLTKPVLKNELLARIKTHLRL 830

Query: 123 A 123
           A
Sbjct: 831 A 831


>gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 231

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+ +V+D    +++ +  +E  G+  +   NG   L   ++ KPD++I+D+ L  IS
Sbjct: 1   MDKKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I++      +P++ +TA   + D+      G + Y++KP S    +  +K  +
Sbjct: 61  GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 220

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED +    + +  + T+GY   +  +G EA+ +  +   D++++DI L +  G
Sbjct: 1   MKKILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFYEKPFDLVVLDIMLPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             I ++IKE      +PVI +TA   + DE    + G + YI+KP S  +F+  +K  +
Sbjct: 61  WSICREIKE---YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTIL 116


>gi|225181287|ref|ZP_03734732.1| response regulator receiver modulated diguanylate cyclase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168067|gb|EEG76873.1| response regulator receiver modulated diguanylate cyclase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 305

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 62/122 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+ +++D+   +K+  DL+   G+         +AL+      PD+I++D+ + +++G
Sbjct: 1   MPKITVIDDSITIVKMLTDLLTQDGHQVCGMTEAADALDKVVGFSPDLIVLDVIMPDVNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + ++ D+    +P++ +T+     D+    + G + YI KP      +  I+ ++ 
Sbjct: 61  YDLCRMLRNDTRTSHLPIMMLTSRGEVTDKVAGLEAGADDYIVKPFEPQEVLARIRTHLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+    +L    ++  G+  L+  +G+EAL +    K D++IMD+ +  + G E+
Sbjct: 4   ILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVMMPNMDGWEL 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+   +  ++P + +TA      + +  + G + Y+ KP      +  +K  +  
Sbjct: 64  CAEIR---DHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKR 118


>gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+I+ED+    +L    +E  G+      +G E L      +PD++I+DI L E++GL+
Sbjct: 2   HVLIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLSCYYDSEPDLLIVDIMLPEVNGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I + +++D  L  +P++ +T      D  R    G + Y+ KP      +  +K  +  +
Sbjct: 62  ICRDVRQDDRL--VPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRS 119


>gi|34557362|ref|NP_907177.1| two-component hybrid protein [Wolinella succinogenes DSM 1740]
 gi|34483078|emb|CAE10077.1| TWO-COMPONENT HYBRID PROTEIN [Wolinella succinogenes]
          Length = 401

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 73/116 (62%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++D   N++L   +++ +GY+    ++G++ L+ AR+H+PD+I++DI++ E+ G E+
Sbjct: 12  ILIIDDTPENLRLLGSVLKEAGYLITMAKSGIQGLQAARKHQPDLILLDIRMPEMDGFEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++E+  L EIPV+ +TA + +    R    G   Y+ KP S S  +  ++ ++
Sbjct: 72  LTRLREEENLGEIPVVFLTAHSDEESILRGLSLGAVDYVKKPFSPSELLLRVRNHL 127


>gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 233

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 59/121 (48%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED     +L    +  +GY         +A        PD++I+D  L   SG
Sbjct: 1   MSRVLVVEDESAIAELISINLRHAGYEVTIAATADQAQLAIDSVLPDLVILDWMLPGQSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + K+ + +S  +E+PVI +TA A +GD+      G + Y++KP S    M  I+  + 
Sbjct: 61  LALAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|302187407|ref|ZP_07264080.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae 642]
          Length = 645

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634


>gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 231

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+I ED +    + +  +E  GY  +   +G +AL+ A   + ++II+DI L  + 
Sbjct: 1   MKNRVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIMLPSMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI K+++E S    +P+I VTA   + D+    + G + YI+KP S+   +  +K  +
Sbjct: 61  GFEICKRVREKS---SVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANV 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 250

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    ++  R  +   G+       G  AL  A Q  P+V+++D+ L ++ G
Sbjct: 1   MTKILVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAQCHPEVVLLDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++      +IPVI ++A     ++      G + Y++KP  +   +  ++  + 
Sbjct: 61  FEVLAGLR---GWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|265752955|ref|ZP_06088524.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263236141|gb|EEZ21636.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1379

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VED+       + L   + Y  +   NG E + +AR+  PD++I D+ +  ++G E
Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1177

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +KED +   IP+I +TA     +  +  + G + YI KP +  I    +K+ I
Sbjct: 1178 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1234


>gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134]
 gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134]
          Length = 1290

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 68/117 (58%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VED ++N  +    ++T         NG+EA+E A+ +  D+I+MD+Q+ E+ G E
Sbjct: 1164 KILLVEDTKINQLVVAKFLKTWQLTIEYALNGVEAVEQAKNNHYDLILMDLQMPEMDGYE 1223

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T++I+     +  P+IA+TA A+  + ER  + G   Y++KP S +     I ++I
Sbjct: 1224 ATRKIRLLPAHKNTPIIALTASALVEERERAFESGVNDYLTKPFSPNELYNKIIRHI 1280


>gi|330504290|ref|YP_004381159.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918576|gb|AEB59407.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 244

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L    +   G+      +G    +       D++I+D+ L +  G 
Sbjct: 6   KSILLVDDDQEIRELLETYLSRVGFQVRAVADGGAFRQSLCAESADLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++E     ++P+I +TA + + D     + G + Y+ KP S    +  IK  +  
Sbjct: 66  SLCRWVREHQRFAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 235

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  +V+IVED     +L    +  +G+  + + +G  A        PDVI++D  L  
Sbjct: 1   MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SGL++ ++ + D+  + IP++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  QSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|222148303|ref|YP_002549260.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735291|gb|ACM36254.1| two component response regulator [Agrobacterium vitis S4]
          Length = 123

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 97/123 (78%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKVMIVEDNELNMKLFRDLIE SGY  +QTRNGMEALELAR+H PD+I+MDIQL E+S
Sbjct: 1   MPKKVMIVEDNELNMKLFRDLIEASGYATIQTRNGMEALELARKHHPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+DSEL  IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKQDSELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFLETIKTYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 221

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     +  ++++ SGY+     +G+ A+E+ R+   D+II+D+ L +I 
Sbjct: 1   MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S    +P+I +TA   + DE +  +   + YI+KP S+++ ++ ++  +
Sbjct: 61  GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 225

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           +   G+      +G    EL +++   ++I+DI + +++G
Sbjct: 1   MAKILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ KQ ++       PVI +TA     D       G + Y+ KP S       IK  + 
Sbjct: 61  LQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+ +V+D    +++ +  +E  G+  +   NG   L+  ++ KPD++I+D+ L  IS
Sbjct: 1   MGKKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K++++      +P++ +TA   + D+      G + YI+KP S    +  +K  +
Sbjct: 61  GEELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 230

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D E    L +  +   G+   +  NG   ++  +    D++++DI L    G
Sbjct: 1   MPKLLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLPGPDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + K+I++   +  IP+I +TA   + D     + G + YI KP S    +  I   + 
Sbjct: 61  LSLCKEIRK---ISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++V+D +    + R   E  GY   +  +GMEA+E+ R+   D+II+D+ + E+ G
Sbjct: 1   MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++I++    +EIPVI ++A   + D+    + G + Y+ KP S    M  +K  I 
Sbjct: 61  FSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 247

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED E   +L R  ++  G+      +  +A E  R   P +I++D  L   SG+ 
Sbjct: 12  RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVA 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             + ++     Q +P+I +TA   +GD     + G + Y+SKP S       ++  +  +
Sbjct: 72  WCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRS 131


>gi|91205788|ref|YP_538143.1| response regulator PleD [Rickettsia bellii RML369-C]
 gi|91069332|gb|ABE05054.1| Regulatory components of sensory transduction system [Rickettsia
           bellii RML369-C]
          Length = 457

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D E N+KL    +    Y   +  +G EAL + ++ K D++++D+ + E+ 
Sbjct: 1   MSANILIVDDIETNIKLLEAKLLNEYYTVFKASSGKEALNILKKEKVDIVLLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E+ K+IK D E   IPV+ VTA +   D  +  + G + +++KPI+ +     IK  
Sbjct: 61  GFEVCKKIKSDPETTHIPVVMVTALSDVDDRVKGLEAGADEFLTKPINDNALFIRIKSL 119



 Score = 62.8 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E  +   ++KPD+I++   L+    L
Sbjct: 153 KKILLINDDVVQAKNIKQMLLKITSNVKVISNSEET-DTINEYKPDLIVISSTLENEDPL 211

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMK-------GDEERIRKGGCEAYISKPISLSIFMET 115
            +   ++   E+  + ++ +  +  +           +  + G   Y   PI  S     
Sbjct: 212 RVGAILRGKPEISGV-ILILQIYEDENGNENQMQLVMKGFELGINDYFVYPIDESELAAR 270

Query: 116 IKKYIGE 122
           IK  +  
Sbjct: 271 IKTQLRR 277


>gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 253

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++V+D     ++    ++ SGY  +   +G +ALEL     PD+I++D+ L ++ G 
Sbjct: 11  ATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 71  AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 127


>gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium]
 gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium]
          Length = 249

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D     K+ +  +   GY      NG EAL++   H  D+II+D+ + ++ G  
Sbjct: 13  HLLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGYG 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S   +IP+I +TA     D+    + G + Y+ KP S       I+  +  
Sbjct: 73  VCQEIRKES---DIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR 128


>gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1245

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDNE+N ++  +L+E +        NG   +E+ R    D+++MD+Q+  + G 
Sbjct: 826 ARILLVEDNEINQQVATELLEMAHLEVAVASNGQIGVEMVRAEPFDLVLMDMQMPVMDGY 885

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + I++++  Q +P++A+TA AM GD E+    G   +++KPI        + K+I
Sbjct: 886 TAARTIRQEARFQTLPILAMTANAMAGDREKCLAAGMNDHVAKPIDPKELFTALAKWI 943



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 12/121 (9%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58
           +V+IV+D+  + ++F  L  + G+ A    +  EAL       A      ++  D ++  
Sbjct: 678 RVLIVDDSATSREIFEQLAISLGFDAHLAASASEALLAIYRAEAADTPYQLVYTDWKMPG 737

Query: 59  ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGG---CEAYISKPISLSIFME 114
           + G+E+T ++K  ++LQ  P +I VTA+      E +R+ G    + +++KP + S  ME
Sbjct: 738 MDGVELTHRLKTATDLQHPPKIIMVTAYDRD---EMLRRLGSNTVDGFLTKPATCSSLME 794

Query: 115 T 115
            
Sbjct: 795 A 795


>gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1290

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ +DN       + L+    Y     ++G  AL   R   PD+++ D+ + E+ G E
Sbjct: 649 KIVLADDNADMRNYVKRLLSQQ-YEVEAVKDGAAALAAIRGQLPDLVLTDVMMPEVDGFE 707

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++ + + +E+P+I ++A A +       + G + Y+ KP S    +  ++  +
Sbjct: 708 LLRELRANPQTKELPIILLSARAGEESRIEGLEAGADDYLIKPFSARELLARVEANL 764



 Score = 90.2 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 2/108 (1%)

Query: 15   MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74
             +    LIE  G  A+   +  EAL    Q +PDV++ DI + E+ G  + +Q++     
Sbjct: 1179 REFIVFLIEQYGGSAIAVASANEALVTLTQFQPDVLLSDIGMPEVDGYMLIQQVRATPPA 1238

Query: 75   Q--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            Q  +IP IA+TA+A + D +     G + +I KP+  +  +E I   +
Sbjct: 1239 QGGQIPAIALTAYAGEIDYQHAMSVGFQRHIPKPVEPTKLVEVILSLV 1286


>gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED +   +  +  +E   Y     ++G E +E  + +  D+I++D+ + ++SG
Sbjct: 1   MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K I++      IP+I +TA     ++  +   G + Y++KP  +      I+  + 
Sbjct: 61  EEVCKIIRK---TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALR 117


>gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
 gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae]
 gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D+    +  R  +  +GY      +G+EALE+  + +PD +++D+ +  + GLE
Sbjct: 2   RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  I+  +  
Sbjct: 62  VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRR 118


>gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 240

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++ ED+          +   GY  +   +G+EAL  A +++PDV+++D+ +  I 
Sbjct: 1   MPQTVLLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRNRPDVLVLDVMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + ++ + +    PV+ +TA     D       G + Y+ KP  +      ++  +
Sbjct: 61  GLQVCRVLRAEGD--RTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|224537099|ref|ZP_03677638.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521276|gb|EEF90381.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 752

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ EDN+      ++ + T  Y  ++  NG EA+ +A Q  PD+I+ DI +  ++G  
Sbjct: 503 TILVAEDNDDMRLFLKNSLSTD-YHVVEASNGEEAMNMALQLNPDIIVCDIMMPVLNGDA 561

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  +IK   E   IP I +TA A K D  +    G + YI+KP  +SI    I+  +
Sbjct: 562 VCSRIKTSVETSHIPFILLTALADKEDIIKGLDCGADDYITKPFDISILKARIRNLL 618


>gi|182412631|ref|YP_001817697.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177839845|gb|ACB74097.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 367

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D   N+ +  + +  +GY  +   +G EAL    Q  PD+I++D+ +  I 
Sbjct: 1   MSETILIVDDTPANLCVLVETLGAAGYRLMVAEDGEEALAQTAQTVPDLILLDVMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++++      + PV+ +TA     D+ +    G   YI+KPI     +  ++ ++
Sbjct: 61  GFETCRRLRAQPTTADTPVLFMTALNETPDKVKAFAAGGVDYITKPIEHEEALARVRTHL 120


>gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 235

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  +V+IVED     +L    +  +G+  + + +G  A        PDVI++D  L  
Sbjct: 1   MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SGL++ ++ + D+  + IP++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  QSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|86749532|ref|YP_486028.1| response regulator receiver domain-containing protein
           [Rhodopseudomonas palustris HaA2]
 gi|86572560|gb|ABD07117.1| response regulator receiver domain protein [Rhodopseudomonas
           palustris HaA2]
          Length = 121

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/121 (66%), Positives = 101/121 (83%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T NG EAL L R+  PD+I+MDIQL ++S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYQTAGTSNGHEALALVRKLHPDLILMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET++++I
Sbjct: 61  GLEVTRWIKDDPELRHIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|78067197|ref|YP_369966.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77967942|gb|ABB09322.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 280

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 40  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 99

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 100 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 157

Query: 121 GE 122
             
Sbjct: 158 RR 159


>gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
 gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
          Length = 231

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D++   +  R  +  +GY  +   +G EAL+L  + +PD+ I+D+ + +  GL+
Sbjct: 2   KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   +  ++P++ +TA     +       G + Y+ KP +L   +   +     A
Sbjct: 62  VCRELRSHGD--DLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRA 119


>gi|237719712|ref|ZP_04550193.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229450981|gb|EEO56772.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1379

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDNE  ++L   L+    Y   +  NG E + +      D+I+ D+ + E+ G+E 
Sbjct: 1128 ILVVEDNEELLQLMVKLLSRE-YNVFKAENGKEGVTILENEDIDLIVSDVMMPEMDGIEF 1186

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K + E+  IPVI +TA   + D     + G +A+I+KP +L++    I+  +
Sbjct: 1187 CKYVKGNLEISHIPVILLTAKNKEEDRAEAYEVGADAFIAKPFNLAVLHARIRNLL 1242


>gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 238

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IV+D+   ++L +  +E  G++ L+  +G  AL+  +++  D+ I+DI + ++ 
Sbjct: 1   MKKTILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYVKENHIDLAIVDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K+++E  +    P++ ++A   + D+      G + +I KP S    +  ++ ++
Sbjct: 61  GYQLIKKVRETLKF---PILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 232

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 2   LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K+   V+I+ED+   ++L +  ++ +GY  +   +G E LEL     PD II+DI L +
Sbjct: 1   MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G E+ K I+ +   + +P+I +T      D  +    G + YI KP   +  +  +K 
Sbjct: 61  LNGWEVCKTIRMED--RHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKT 118

Query: 119 YIGE 122
            +  
Sbjct: 119 VLRR 122


>gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
 gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
          Length = 232

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED+E      R L+E  GY   +  +G E L+       D++I+DI +  ISG
Sbjct: 1   MDKLLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQKFDS-TFDLLIIDIMMPNISG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+E S    +P++ +TA +++ D+      G + Y+ KP S    +  I+  I 
Sbjct: 60  IEVCRRIREKS---YVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 226

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E  + L    +  +GY  ++ R+G EA++  R+H  D++++D+ + E+ G
Sbjct: 1   MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I+       +P++ VTA     D  +  K G + Y++KP   +  +  I+  + 
Sbjct: 61  WETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+++ED     ++ +  +E +G+  +    G   L L RQHKPD++++D+ L  + G
Sbjct: 1   MSTVLLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++I+  S   ++P+I VTA   + D     + G + YI KP S+   +  ++  + 
Sbjct: 61  LDVAREIRRQS---DVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|289649401|ref|ZP_06480744.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 782

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VEDN +N  + + ++   G   + +  G EALE   Q   D+++MD  +  + G
Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSRGGEALEQLEQDHFDLVLMDCNMPVMDG 717

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776


>gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1385

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 59/116 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN    +    L+ ++GY     ++G+ AL+  R H PD++I D+ +  + GL
Sbjct: 636 ARLLVADDNADMREYLARLLHSAGYQVDTVKDGLAALQAVRAHAPDLVISDVMMPGLDGL 695

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +   ++ D     +PV+ ++A A +       + G + Y+ KP + +  +  ++ 
Sbjct: 696 GLVAALRADPRTASVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRA 751


>gi|237799587|ref|ZP_04588048.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022443|gb|EGI02500.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 227

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120


>gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 226

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I+EDNE   +L R+  E  G+      +G   L+L R  K D +I+DI L E+ G E
Sbjct: 2   RLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  Q++   E  ++PVI +TA     D     + G + Y++KP      M  +   +  +
Sbjct: 62  VMDQVR--DEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRS 119


>gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
 gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
          Length = 227

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K+ +VED E    L R  +E  G+       G EA    ++  PD++I+D  L  +S
Sbjct: 1   MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    M  +K  +
Sbjct: 61  GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3]
          Length = 258

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 70/121 (57%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+E   ++   ++   G+  +   +G +A E+++ +KPD++++D+ L  + 
Sbjct: 35  MKARILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLMLPGMD 94

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI + I+ +S   ++P++ +TA +   D  R  + G + Y++KP   +  +  ++  +
Sbjct: 95  GIEICRLIRAES---DVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARL 151

Query: 121 G 121
            
Sbjct: 152 R 152


>gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 231

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++V+D     +  +  +E SG +      N  +A EL  +  PD+II DI + ++ G 
Sbjct: 6   KILLVDDEPGVRESVQAYLEYSGDFNVKVASNANQAWELIEKEIPDLIISDIMMPQVDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +++ED   Q +PV+ +TA  M  D  +    GC+AY+SKP         +K  +  
Sbjct: 66  QFLGKLREDPRYQSLPVVFLTARGMTSDRIQGYHAGCDAYLSKPFDPEELEAIVKNLLER 125


>gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 236

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M KK + +VED +   +L    ++ +GY      +G   L   +  KPD+ ++DI L  I
Sbjct: 1   MSKKLIYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSECQNMKPDLFLLDIMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++IKE S L++IP+I +TA   + D+    + G E YI+KP S+   +  IK  
Sbjct: 61  DGLEVCRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVI 120

Query: 120 IGE 122
              
Sbjct: 121 FRR 123


>gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 226

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED      L +D +E   Y       G +A+E+  + KP ++I+D+ L  ++G
Sbjct: 1   MSRILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI + I+       IP++ ++A   + D+ +    G + YI+KP      +  +   + 
Sbjct: 61  YEICQNIR---IKSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
 gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E S +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E S +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
 gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   ++II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|268593356|ref|ZP_06127577.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
 gi|291311053|gb|EFE51506.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
          Length = 232

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL+       D++++D+ + + +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K++++   + + PVI +TA   + D+    + G + Y+ KP +    +  I+  + 
Sbjct: 60  IETLKELRQ---IHQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 225

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K++IV+D+    +L    +E  G+   +  +G++AL      K D++I+DI +  + 
Sbjct: 1   MIPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
 gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    L    ++   Y   +   G +ALE  +++  D+ I+D+ + ++ 
Sbjct: 1   MAYNILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHYDLAILDVMMPDLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I++       PVI +TA +   D+      G + Y++KP +       +K  +
Sbjct: 61  GFSLLKKIRKHYYF---PVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +M+V+D+E    L R  +   GY      NGME L L     PD++I+D+ + ++ 
Sbjct: 1   MRQHIMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++E      +P++ +TA     D  +    G + Y+ KP +L   +  ++  +
Sbjct: 61  GWEVCRRVREGGST--VPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  V+IV+D+     L +   E  G+I     +G +AL+  R+ KPD++++D+ L  I
Sbjct: 1   MSKNSVLIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDKIREQKPDIVVLDLMLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ ++ ++     +IP++ +TA   + D     + G + Y++KP S    +  ++  
Sbjct: 61  DGWEVCRRARKIG---DIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAI 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|323495068|ref|ZP_08100157.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546]
 gi|323310725|gb|EGA63900.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546]
          Length = 240

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEI 59
           M  K+++V+D++   +L  + +   GY      +G +      Q   PD+I++D+ L   
Sbjct: 1   MSAKILVVDDDQEICELLEEYLTKQGYQVDAVNDGEQMKATLEQQGYPDLILLDVMLPGD 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + +Q++  S    +P+I +TA +   D+    + G + YI+KP +       IK  
Sbjct: 61  DGFTLCQQVRRHS---SVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D      L    +E  GY  ++  +G EA+ + +    +++++DI + ++ G E+
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIELVVLDIMMPKMDGYEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   +  
Sbjct: 66  TRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120


>gi|229188858|ref|ZP_04315891.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594563|gb|EEK52349.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 225

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA     D  +  K G + Y+ KP         I+  +  
Sbjct: 64  CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVMKPFHEEELFARIEAVLRR 118


>gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 230

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D +    L    ++  GYI  +   G+EAL+L  + + D+II+D+ +  ++G++
Sbjct: 5   TILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVEERQIDLIILDVMMPVVNGID 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I+E       P+I ++A     D+      G + Y++KP +    +  +K  +  
Sbjct: 65  ACIKIREQ---YNTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRR 120


>gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D    ++     ++  G+      +GM A+ +A + +P VI++D+ +  + G 
Sbjct: 7   AKILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIAAEFQPHVIVLDVMMPGMDGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ + ++++ E   + +I +TA     D  +    G + Y+ KP S    +  I   + 
Sbjct: 67  EVCRLLRKNGE--NVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLR 123


>gi|329961484|ref|ZP_08299565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328531696|gb|EGF58525.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1361

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN    +     +  S Y  L+  NG EAL + ++ + D+I+ D+ +  + GL++
Sbjct: 1110 ILIVEDNADIRQYLSRELGKS-YRTLEAENGEEALNILKEQEIDLILTDVMMPVMDGLKL 1168

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             K IK++     IPVI ++A     ++    + G + YI KP S+++    I+    
Sbjct: 1169 CKHIKQNLYTCHIPVIMLSAKTDLKEQIEGLQMGADDYIPKPFSMALVTTKIRNLFR 1225


>gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 247

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +     +   GY     ++G EAL+   + +PD++++D+ +  + GLE
Sbjct: 2   RVLVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRDRPDIVVLDVMMPRVDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             ++++   +  ++PV+ +TA     D       G + Y+ KP +L      ++  
Sbjct: 62  ACRRLRARGD--DLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRAL 115


>gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V+I +D+   ++  R+++ +  Y      NG+EA++       D++I+D+ +  I 
Sbjct: 1   MM-RVLIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLYDAVFDLVILDVMMPHID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +QI++      IPV+ +TA     D+ +    G + Y++KP S+   +  ++  +
Sbjct: 60  GLSLLEQIRK--GGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +++  +II+DI L E+ 
Sbjct: 1   MKRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWTVCRRIRKKS---NVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRLM 117


>gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
 gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
          Length = 234

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I+ED E    + +  +E  GY  +   +G+E +E  R++ PD+I++D+ L +++
Sbjct: 11  MAKTILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKFREYHPDLILLDLMLPKMN 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S+   +P+I +TA      + +      + YI+KP S+ + ++ I+  +
Sbjct: 71  GFSVCEAIRKESQ---VPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVL 127

Query: 121 GEA 123
             A
Sbjct: 128 RRA 130


>gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
 gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
          Length = 219

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED      L +  +  +GY      +G EA +   Q   D+I++DI L EI G
Sbjct: 1   MNRILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEGFDLILLDIMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   I+       IPVI +TA A   D+ +  K G + Y++KP  ++  +  ++  + 
Sbjct: 61  YELMDYIRPLE----IPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|1729783|emb|CAA70931.1| colR [Pseudomonas fluorescens]
          Length = 227

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+ L + PVI +TA     D  +  K G + Y+ KP +LS     I+  +  +
Sbjct: 62  LCKRLREDARL-DTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120


>gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 256

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     ++    ++ +GY  +   +G +ALEL  +  PD++++D+ L ++ G 
Sbjct: 12  ATILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVMLPKLDGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 72  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 128


>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
 gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
          Length = 243

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D    ++L    +   G+      +G + L++AR  +PD I++D+ +  + G 
Sbjct: 16  ARILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGF 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + PV+ +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 76  GLLRRLRADGV--DAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 133

Query: 123 A 123
           A
Sbjct: 134 A 134


>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 235

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    +   G+       G E L+ AR  +PD +I+D+ +  + G 
Sbjct: 8   ARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+++ D    + PV+ +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 68  GLLKRLRADGV--DAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|157827084|ref|YP_001496148.1| response regulator PleD [Rickettsia bellii OSU 85-389]
 gi|157802388|gb|ABV79111.1| response regulator PleD [Rickettsia bellii OSU 85-389]
          Length = 457

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D E N+KL    +    Y   +  +G EAL + ++ K D++++D+ + E+ 
Sbjct: 1   MSANILIVDDIETNIKLLEAKLLNEYYTVFKASSGKEALNILKKEKVDIVLLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E+ K+IK D E   IPV+ VTA +   D  +  + G + +++KPI+ +     IK  
Sbjct: 61  GFEVCKKIKSDPETTHIPVVMVTALSDVDDRVKGLEAGADEFLTKPINDNALFIRIKSL 119



 Score = 62.8 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E  +   ++KPD+I++   L+    L
Sbjct: 153 KKILLINDDVVQAKNIKQMLLKITSNVKVISNSEET-DTINEYKPDLIVISSTLENEDPL 211

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMK-------GDEERIRKGGCEAYISKPISLSIFMET 115
            +   ++   E+  + ++ +  +  +           +  + G   Y   PI  S     
Sbjct: 212 RVGAILRGKPEISGV-ILILQIYEDENGNENQMQLVMKGFELGINDYFVYPIDESELAAR 270

Query: 116 IKKYIGE 122
           IK  +  
Sbjct: 271 IKTQLRR 277


>gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 237

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED+   ++L    +  +G+      +G  AL  A+ H+PD++++D+ L ++ G 
Sbjct: 12  ARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++E       PV+ +TA     D+ R    G + Y++KP SL      I+  +  
Sbjct: 72  EVIRMLRE--GGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 129


>gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
 gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED++   +L +  + T  Y      +G+E ++   +   D+I++D+ +  ++
Sbjct: 9   MNYHILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLN 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K I+  S    IP+I +TA   + D+ +    G + YI+KP S  + +  ++  +
Sbjct: 69  GFEVAKMIRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVL 125

Query: 121 GEA 123
             +
Sbjct: 126 RRS 128


>gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
          Length = 225

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++  +   +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCKKMR--TSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
 gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED        +  ++ + +  ++   G E +E AR+HKP+V+I+DI L  + G
Sbjct: 1   MDKILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K +++  E   + +I +TA +   D+    + G + YI KP +       IK  + 
Sbjct: 61  LEVCKILRQ--EFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
 gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
          Length = 240

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 67  VTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123


>gi|146306182|ref|YP_001186647.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574383|gb|ABP83915.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 243

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L    +  +G+      +G        +   D++I+D+ L +  G 
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFAVRAVADGEGLRAALVEEPADLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+E      +PVI +TA + + D     + G + Y+ KP S    +  IK  +  
Sbjct: 66  SLCRWIREHQRFAAVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|330811323|ref|YP_004355785.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379431|gb|AEA70781.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+ L + PVI +TA     D  +  K G + Y+ KP +LS     I+  +  +
Sbjct: 62  LCKRLREDARL-DTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120


>gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
 gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L+ A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|241554112|ref|YP_002979325.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863418|gb|ACS61080.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 234

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D      +    +E +G   +  RNG EA+   R+   D+II+DI + E+ 
Sbjct: 1   MAPRILVVDDEPHIRDVICFALERAGLAWMAARNGTEAMAAFRRGNIDLIILDIGMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI++      +P++ ++A   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|56416693|ref|YP_153767.1| response regulator PleD [Anaplasma marginale str. St. Maries]
 gi|222475058|ref|YP_002563473.1| Putative two-component response regulator with GGDEF and receiver
           domains [Anaplasma marginale str. Florida]
 gi|255003037|ref|ZP_05278001.1| response regulator PleD [Anaplasma marginale str. Puerto Rico]
 gi|255004160|ref|ZP_05278961.1| response regulator PleD [Anaplasma marginale str. Virginia]
 gi|56387925|gb|AAV86512.1| hypothetical protein AM475 [Anaplasma marginale str. St. Maries]
 gi|222419194|gb|ACM49217.1| Putative two-component response regulator with GGDEF and receiver
           domains [Anaplasma marginale str. Florida]
          Length = 455

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D   N+KL +  +    Y  L   +G EA++LAR+  PD+I++D+ +  + 
Sbjct: 1   MTAKILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLAREKHPDLILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  ++++ D     IPV+ VTA     D        G + +++KPI+       I+  
Sbjct: 61  GYETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISAGADDFLTKPINDVALFSRIRSL 120

Query: 120 IG 121
             
Sbjct: 121 TR 122



 Score = 58.2 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+MI++ +++  +    +++          N  + + L      D+ I+D+      GL
Sbjct: 157 AKIMILDSDKVRSEHMNSVLQEYFQETAVLDNPSQDVNLQNAESYDLFIIDLNFGG-DGL 215

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMET 115
                 + ++  +  P++ +       D     R  + G   YI  P+  +  +  
Sbjct: 216 RFCSNFRSNNNTRYTPILVL--LDESDDIGILSRAFEIGISDYIMAPVDSNELLAR 269


>gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX]
          Length = 241

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++++D      L +  +   G+      +G E L LAR  +PD+I++D+ L +ISG +
Sbjct: 11  HVLVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPDISGFD 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++ +  ++PVI +TA     D       G + Y++KP S+   +  ++  +  
Sbjct: 71  VCRRLRDEDD--DVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRR 127


>gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++M+V+D+   + L  D +E  GY      NG +ALE   +  P++II DI + E+ G 
Sbjct: 11  RRLMLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEEVPELIICDIMMPEMDGY 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K I+E+S+   IPVI ++A     D  +    G + Y+ KP      M  ++  + +
Sbjct: 71  TLVKLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQ 130


>gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
 gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
          Length = 255

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D      L    +  +GY      +G EAL LA   KPD++I+D+ L ++ G 
Sbjct: 24  ARLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGF 83

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++      ++P++ +TA     D+    + G + Y++KP  L   +  I   +  
Sbjct: 84  TVTRKLRA--AGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 141


>gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
 gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
          Length = 225

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           +   G+      +G    EL +++   ++I+DI + +++G
Sbjct: 1   MAKILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ KQ ++       PVI +TA     D       G + Y+ KP S       IK  + 
Sbjct: 61  LQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|294495691|ref|YP_003542184.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
 gi|292666690|gb|ADE36539.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
          Length = 285

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L    +    Y      +G E L+   +   D+I++DI +  +SG +
Sbjct: 8   KILIVDDEPQNLDLMEAYLSHL-YEITLAESGEECLQKVEEKDIDLILLDIMMPGMSGYD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + K +KE    + IP+I VTA + K D  +  + G + +++KP++    +  +K  + 
Sbjct: 67  VAKTLKESESTRHIPIIMVTALSEKEDRIKSIEVGADDFLTKPVNRVELLTRVKSLLR 124


>gi|238894841|ref|YP_002919575.1| putative two-component response transcriptional regulator
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238547157|dbj|BAH63508.1| putative two-component response transcriptional regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 246

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L  D +E SGY A    NG     + + H+ D+I++DI +    GL 
Sbjct: 6   HILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ + + Q+IPV+ +TA     D     + G + Y+ KP      +  IK  +  
Sbjct: 66  LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 123


>gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++  ++L    +   GY   +  +G+EA+E   Q   D++I+D+ +  + 
Sbjct: 1   MSVRILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLEQKSIDLVILDVMMPNLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK+I+++S    IP++  +A     D+      G + Y++KP +    +  +K  +
Sbjct: 61  GLEVTKRIRKNS---TIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|167752240|ref|ZP_02424367.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216]
 gi|167660481|gb|EDS04611.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216]
          Length = 389

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 63/117 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D   N+ L + ++  +GY  +    G EALE      PD+I++DI + +++G E
Sbjct: 12  KILVVDDIATNVLLLKTILGKAGYRIVTATGGREALEKVESESPDLILLDIMMPDMNGYE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K D     IPVI ++A     +  +  K G   Y+SKP +    +  +  ++
Sbjct: 72  VIERLKADERFCRIPVIFLSALHDSENIVKGFKMGASDYVSKPFNHEELITRVAHHM 128


>gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
 gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
          Length = 223

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +L +K  R  +E          +G EAL+ A+  + D++++D+ L ++ G 
Sbjct: 4   KKILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVMLPKMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + I+E     ++P++ +TA +   D+    + G + YI+KP ++      IK  +  
Sbjct: 64  QVCQAIRE---FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 120


>gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 269

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     ++    ++ +GY  +   +G +ALE+  +  PD++++D+ L ++ G 
Sbjct: 24  ATLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRESPDLVVLDVMLPKLDGF 83

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 84  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140


>gi|307718269|ref|YP_003873801.1| two-component regulatory system response regulator [Spirochaeta
           thermophila DSM 6192]
 gi|306531994|gb|ADN01528.1| two-component regulatory system response regulator [Spirochaeta
           thermophila DSM 6192]
          Length = 431

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D   N++L   +++   YI     +G EAL    +   D+I++DI + E+ G E
Sbjct: 10  RILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTPFDLILLDIMMPEMDGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++ + + ++IP+I ++A A +    +  + G + Y+ KP      ++ ++  +
Sbjct: 69  VCRRVRSNPKTKDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQL 125


>gi|238754750|ref|ZP_04616102.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
           ATCC 29473]
 gi|238707058|gb|EEP99423.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
           ATCC 29473]
          Length = 232

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL L   +  D++++DI +   +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNIVVAYDGEQALNLL-DNSIDLLLLDIMMPRKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K++++     + PVI +TA   + D     + G + Y++KP +    +  I+  + 
Sbjct: 60  IETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016]
 gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 237

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++++D+    +L   +++  G+   +  NG +AL+   + K D+ ++DI + ++ G E
Sbjct: 15  KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             KQ++   E  ++P++ +TA +    + +  + G + Y++KP  +   +  IK  +  
Sbjct: 75  FCKQVRRYYE--DMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRR 131


>gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1486

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 74/116 (63%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDNE N+    + ++   Y  +  +NG EA+ LA+  +PD+I+MDI L  I+GLE 
Sbjct: 1370 ILLAEDNETNITTISNYLKAKKYKLILAKNGKEAISLAQSQQPDLILMDICLPGINGLEA 1429

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +QI++  +L++IP+IAVTA A+ GD ER  + G   Y+SKP+ L   +  I+  +
Sbjct: 1430 IQQIRQLPDLKDIPIIAVTALALTGDRERCLEAGANEYLSKPLKLKELVALIQSLL 1485


>gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS]
 gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS]
          Length = 1262

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 70/118 (59%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++VEDN +N ++ +  IE+ G I     NG EA+ +      D ++MD+Q+ E+ G+
Sbjct: 946  ARILVVEDNSINQQVIQKTIESEGLIVEIANNGKEAVMMVDNIHFDAVLMDMQMPEMDGM 1005

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+ I++ ++   +P+IA+TA AM G  E++   G   YI+KP  +      ++K+I
Sbjct: 1006 EATQLIRQKTQHDNLPIIAMTAHAMSGVREKLLAVGMNDYITKPFDVDDLFSVLEKWI 1063



 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 68/128 (53%), Gaps = 14/128 (10%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL----ELARQHKPDVIIMDIQLQEI 59
           K +IV+DN+ +  + +  + T     +   +G  A+      A+    D++ +D ++  +
Sbjct: 799 KALIVDDNKTSRTILQQELNTFSLQVIAVDSGEAAIVALETAAQTQPYDLVFLDWKMPGM 858

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFA-----MKGDEERIRKGGCEAYISKPISLSIFME 114
           +G+E  + IK+++ L  + +I +TAF+      + D++ +     +A+++KP++ S+  +
Sbjct: 859 NGIETARCIKQNANLPPVSIIMMTAFSRENFLTETDKDYL-----DAFLTKPVTQSLLFD 913

Query: 115 TIKKYIGE 122
           TI    G+
Sbjct: 914 TIMTVFGK 921


>gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+    +L R  +E +G+  L+  +G  AL    QH  DV+++D+ L E+ G ++ 
Sbjct: 2   LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++       +PVI +TA   + D       G + Y+ KP S    +  ++  +  A
Sbjct: 62  AEVRRRETW--LPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRA 117


>gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 226

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+V++VED     ++  D  + + +   +  NG +AL      +PD+II+DI + E+ 
Sbjct: 1   MKKRVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +Q++  S    +P+I +TA +   D+    + G + Y++KP S  + +      +
Sbjct: 61  GWEVCRQVRSRSG---VPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALM 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +M+VED     +L RD +E +G+      +G EA +   Q KP ++I+D+ +  + G
Sbjct: 1   MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSFTQRKPSLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti]
 gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
 gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 227

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K+ +VED E    L R  +E  G+       G EA    ++  PD++I+D  L  +S
Sbjct: 1   MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    M  +K  +
Sbjct: 61  GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|307153766|ref|YP_003889150.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306983994|gb|ADN15875.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 374

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+  N+ L + ++E  G   +  ++G+ AL   ++  P +I++D+ + ++ G E+
Sbjct: 15  ILVVDDSPDNLFLIQTILEEQGLKVVLAQDGLAALNRIQESLPKLILLDVMMPKMDGFEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+ +  L  IP++ +TA+       +    G + +I KP+ +   +  ++  + 
Sbjct: 75  TRRIRANENLPFIPILLITAYDQPS-AVKGLDAGADDFIRKPVDVDELLARVRSLLR 130


>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
          Length = 242

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+D    ++L    +   G+      NG E L+ AR  +PD +I+D+ +  + G  
Sbjct: 18  RVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFG 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ D    + PV+ +TA     D+      G + Y++KP SL   +  ++  +  A
Sbjct: 78  MLRRLRADGV--DAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA 135


>gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
 gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
          Length = 231

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D    + +    +   GY      NG EAL+  R    D+II DI + ++ G
Sbjct: 1   MTHILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAVDLIITDIMMPQMDG 60

Query: 62  LEITK---QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +      Q++ED      P I +TA     D       G + Y++KP S       +K 
Sbjct: 61  YDFIDAVLQLREDQ-----PFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVKN 115

Query: 119 YIGE 122
            +  
Sbjct: 116 LLRR 119


>gi|77458871|ref|YP_348377.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1]
 gi|77382874|gb|ABA74387.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1]
          Length = 1163

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +KV++V+D+  N+      +ET G + +  RNG EA+E   +    D+++MD+ + E+ G
Sbjct: 1039 RKVLLVDDDVRNIFALTSALETKGAVVVIGRNGREAIEKLNEVEDIDLVLMDVMMPEMDG 1098

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1099 FEATMEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGANDYLAKPIDLDRLFSLIRVWLP 1158

Query: 122  E 122
            +
Sbjct: 1159 K 1159



 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED      +  DL    GY  L      E  +LA++  PD I++D++L + SGL +
Sbjct: 773 ILVVEDEPNFAHILYDLAHELGYQCLVAHGADEGYDLAKEFVPDAILLDMRLPDHSGLTV 832

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D        G   Y  KP +     +   + 
Sbjct: 833 LQRLKEHAGTRHIPVHVIS----VEDRVEAAMHMGAIGYAVKPTTREELKDVFARL 884



 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++VED++L  +    LI              +ALEL R    D +++D++L ++ G 
Sbjct: 893 KRVLLVEDDDLQRESIARLIGDDDIEITAVGLAQDALELLRTTIFDCMVIDLKLPDMLGN 952

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           ++ K++  +      PVI  T   +  DEE 
Sbjct: 953 DLLKRMSTEDICSFPPVIVYTGRNLTRDEEA 983


>gi|15839182|ref|NP_299870.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|9107813|gb|AAF85390.1|AE004066_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
          Length = 266

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 61/120 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+IV+D      +    +    + +LQ  +  EA  +     PD+I++D  L   SGL
Sbjct: 38  KRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGL 97

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T++ ++ S  +EIP+I +TA + + D     + G + Y+ KP S    +  I+  +  
Sbjct: 98  ELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRR 157


>gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML+K++IV+D +  +   +D  +  GY  +   NG EA+E   +   D+I++DI +  I 
Sbjct: 1   MLEKILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+   +    P+I ++A   + D+ +    G + YI KP S+      ++ ++
Sbjct: 60  GFQICQKIR---DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++  ++  +  +   GY    + NG EAL+  R  + ++I+MDI + ++ 
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K+I+    L  IP+I +T    + D+ +    GC+ YI+KP  L      +   +
Sbjct: 61  GFEAIKRIR---RLTNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|159898013|ref|YP_001544260.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891052|gb|ABX04132.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++++D     ++ R  +E  GY  ++  NG EAL  AR  KPD++++D+ + E++
Sbjct: 1   MDYTILLIDDEAKLRQVIRLSLEQEGYRVVEASNGREALYRARIEKPDLVVLDLMMPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E    +   S+    PVI +TA     D+    + G + YI+KP ++   +  I+  +
Sbjct: 61  GTEF---LLAFSKESNTPVIMLTARVEDHDKIIGLELGADDYITKPFNMRELIARIRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E   ++ +  +ET+GY      +G  A E      P+++++D+ L  I  +E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDRME 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++DS    +PVI +TA     D+    + G + Y+ KP      +  +K  +  
Sbjct: 67  VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122


>gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus 132]
 gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR
 gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR
 gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR
 gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR
 gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR
 gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR
 gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR
 gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR
 gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus]
 gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20]
 gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981]
 gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131]
 gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172]
 gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189]
 gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193]
          Length = 219

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED +   +     +    Y      +G + L+ A  H  D+II+D+ L  I+G
Sbjct: 1   MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++    Q  P+I +TA +   D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1311

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+      ++ +    +  L+  +G E   +A Q KPD+II D+ + ++ G+E
Sbjct: 1065 TILLVEDNDEFRHYLQEELSRH-FTVLEASDGEEGETVALQQKPDIIITDLMMPKMDGIE 1123

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+IK + E+  IPVI +TA A   +EER  K G +AY++KP    I    I   + +
Sbjct: 1124 LCKRIKHNIEVSHIPVILLTASASVENEERGYKEGADAYMTKPFKWEILTARIHNLLAQ 1182


>gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str.
           Sunitezuoqi]
          Length = 232

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +    L+   GY      +G    E A+    D++I+D  L   +GLE
Sbjct: 2   RILLVDDEVELTEPLSRLLTREGYTVDAAYDGTSGNEHAQTGSYDLLILDWMLPGKTGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I +Q++   +    PV+ +TA     D  +    G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQQLRRQGKT--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 119


>gi|325104532|ref|YP_004274186.1| histidine kinase [Pedobacter saltans DSM 12145]
 gi|324973380|gb|ADY52364.1| histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1368

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++V+DN   +      +    Y      NG +AL++      D+II D+ + EI G++
Sbjct: 1118 KLLVVDDNYEIVDFLSSHLNK--YQVAVAYNGKQALDILENDSFDLIISDVMMPEIDGIQ 1175

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K+IK++     IPVI +TA      + +  + G + Y++KP S+S+    ++  +
Sbjct: 1176 LCKKIKQNINTCHIPVILLTAKNETQHQIKGLEAGADDYVTKPFSMSLLTAKVQSIL 1232


>gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 226

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E        ++E  G+      +G+ AL    +H  D++++D+ L  +SG
Sbjct: 1   MTRLLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGADLVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +++ S    +PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRALRQRS---TVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
 gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +  +   +G +AL     ++P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S    +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREIRAKS---NVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRR 121


>gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
 gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
          Length = 224

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D +   ++ R   E  G+   +  +G+EA++ A +   D+I+MDI +  + G
Sbjct: 1   MVKILVVDDEQRIREMIRKYAEYEGFAVDEACDGLEAVDKAMKENYDLIVMDIMMPNLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++I++  E   +PVI ++A   + D+      G + Y+ KP S    M  I   + 
Sbjct: 61  FSACREIRKTHE--NVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
 gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 61/123 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++ +VED E    L +  +E  GY       G EA    ++  PD++I+D  L  IS
Sbjct: 3   MSPRITVVEDEEALSVLLQYNLEAEGYEVDAVLRGDEAEIHLQERVPDLLILDWMLPGIS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +P+I +TA   + +  R    G + Y+ KP S    +  ++  +
Sbjct: 63  GIELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAML 122

Query: 121 GEA 123
             A
Sbjct: 123 RRA 125


>gi|71737625|ref|YP_276201.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558178|gb|AAZ37389.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 227

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120


>gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 220

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+       +  +E  G+     RN +E LELA +H+PD++I DI + ++ 
Sbjct: 1   MAAHLLLVDDDPGIRLALQAYLEDEGFGVTTARNAIEGLELAEKHQPDLVITDIMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    ++++     +  PV+ +TA     D  +  + GC+AY+ KP      +  ++  +
Sbjct: 61  GYRFLQKLRALPRFRYTPVVFLTAKGQTADRIQGYRHGCDAYMPKPGDPEELVAIVRNLL 120

Query: 121 GEA 123
             +
Sbjct: 121 DRS 123


>gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
 gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++ +  +  +   +G  A E+ R   PD+I++D+ L  + 
Sbjct: 1   MKARILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRASDPDLILLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +QI+ +S   ++PV+ +TA +   D  R  + G + Y+ KP   +  +  +K  +
Sbjct: 61  GIQVCQQIRAES---DVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
 gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
          Length = 226

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED E   ++    +   GY   +  +G E LE A     D++++DI L  +SG
Sbjct: 1   MPKILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGGFDLVLLDIMLPSMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++ +S+   +PVI VTA     D+      G + YI+KP  +   +  I+  + 
Sbjct: 61  MEVLRRLRRESQ---VPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALR 117

Query: 122 E 122
           +
Sbjct: 118 K 118


>gi|116049556|ref|YP_791640.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584777|gb|ABJ10792.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 651

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 67/117 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  +   ++ + GY      +G++A+  A + + D I+MD +L  + G   
Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+     + +P+IA+TA A++GD E   + G   Y++KP   +     ++++IG
Sbjct: 577 TREIRAQENGRRVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633


>gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 230

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I +DNE  + + +   E  G++ L   +G+EA+++  ++ P ++++D+ + +  
Sbjct: 1   MDKYILIADDNEGILDILKTYAEKEGFMPLLAHDGLEAIDIFSKYHPLLLLLDVMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ S    +P+I +TA     D       G + YI KP S    M  I+  +
Sbjct: 61  GFEVCREIRQKS---NVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300857600|ref|YP_003782583.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685054|gb|ADK27976.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205340|gb|ADL09682.1| Two-component regulatory protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302329894|gb|ADL20088.1| Two-component regulatory protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275579|gb|ADO25478.1| Two-component system transcriptional regulatory regulatory protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 233

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 61/121 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D    +++    +E  G+  L   +  +  +L  +++ D++I+D+ L + SG 
Sbjct: 4   RRVLVVDDEPQMVQIISYALELEGWEVLSAASAQKGWQLLGEYRCDLVILDVMLPDASGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+   ++   PVI +TA     +     + G + Y++KP S    +   +  +  
Sbjct: 64  ALCERIRASGDVAATPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|255320055|ref|ZP_05361251.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262380561|ref|ZP_06073715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302923|gb|EET82144.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262298007|gb|EEY85922.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 236

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63
           ++IV+D     ++    ++ +G+  LQ  +  +A ++    +P +I++D  +   ISG++
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGGISGVD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K D  L EIPVI +TA   +  + +    G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125


>gi|254424005|ref|ZP_05037723.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Synechococcus sp. PCC 7335]
 gi|196191494|gb|EDX86458.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Synechococcus sp. PCC 7335]
          Length = 617

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 68/114 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D   N+ +   L+ ++GY  +Q+ NG+EAL LA+ H+P +I++DI + ++ G E
Sbjct: 22  RILIVDDTPTNLFVLSKLLTSAGYEVIQSSNGLEALMLAQSHQPALILLDIMMPDMDGHE 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + ++++  S    IPVI ++A     ++ +  + G   Y++KP      +  ++
Sbjct: 82  VCRRLRTVSATAHIPVIFLSALDAPLNKIQAFRSGAADYVTKPFQTEEVIARVQ 135


>gi|17232800|ref|NP_489348.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134447|dbj|BAB77007.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 437

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN  N+K+  + ++  G+ AL   +G  ALE      PD+I++D+ +  I G E 
Sbjct: 12  VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAHPDLILLDVMMPGIDGFET 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +   Q  PVI +TA +   D+ +  + G   YI+KP      +  +K ++
Sbjct: 72  CRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHL 127


>gi|323498262|ref|ZP_08103264.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326]
 gi|323316690|gb|EGA69699.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326]
          Length = 240

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQE 58
           M  ++++V+D+E   +L  + +  SGY      +G EAL+   +    PD++++D+ L  
Sbjct: 1   MNARILVVDDDEEIRELLDEYLTKSGYQVATVGDG-EALKQHLEVHGYPDLVLLDVMLPG 59

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G  + + I+ +S    +P+I +TA + + D+    + G + YI+KP +    +  IK 
Sbjct: 60  DDGFTLCQYIRRES---SVPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKA 116

Query: 119 YIGE 122
            +  
Sbjct: 117 VLRR 120


>gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 222

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++    +   GY   +  +G  AL L R  KPD++++DIQL E+ GLE+
Sbjct: 2   VLVVEDEPEIAEILEGYLRRDGYRTERAADGKAALGLYRAAKPDLVLLDIQLPELDGLEV 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+ D      PVI VTA +   D+    + G + Y++KP S    +  +K  +  A
Sbjct: 62  LRRIRADG---NTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRA 117


>gi|295108248|emb|CBL22201.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 224

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D +  + +        GY+     NG EAL    ++ PD+I++DI + +++
Sbjct: 1   MAQSILIVDDEKDIVSMLNQYFYKIGYVVYTAINGKEALNAITKN-PDIILLDINMPDMN 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+        P+I +TA     D+ +    G + Y+ KP S+      +  ++
Sbjct: 60  GFTVCEAIR---NYVSCPIIFLTARVEDCDKIKGFAIGADDYVVKPFSIDELEARVAAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|75908776|ref|YP_323072.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75702501|gb|ABA22177.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 437

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN  N+K+  + ++  G+ AL   +G  ALE      PD+I++D+ +  I G E 
Sbjct: 12  VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAHPDLILLDVMMPGIDGFET 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +   Q  PVI +TA +   D+ +  + G   YI+KP      +  +K ++
Sbjct: 72  CRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHL 127


>gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
 gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
          Length = 225

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           +   G+      +G    EL +++   ++I+DI + +++G
Sbjct: 1   MAKILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ KQ ++       PVI +TA     D       G + Y+ KP S       IK  + 
Sbjct: 61  LQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|296390015|ref|ZP_06879490.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 651

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 67/117 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  +   ++ + GY      +G++A+  A + + D I+MD +L  + G   
Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+     + +P+IA+TA A++GD E   + G   Y++KP   +     ++++IG
Sbjct: 577 TREIRAQENGRRVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633


>gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC
           7002]
 gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus
           sp. PCC 7002]
          Length = 227

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D          +++  G+       G + LELA   + D++I+D  L + SG+E
Sbjct: 2   RILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEYDLLILDWMLPQYSGVE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++        P++ +TA     D       G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQRVRSLGRT--TPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALLRRS 119


>gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
 gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     ++    +    Y  ++  +   A+    + KP++I++D  +   S
Sbjct: 1   MNNKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRS 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K +K+  E ++IP+I +TA + + D       G + YI+KP S  + +  I+   
Sbjct: 59  GIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVW 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
 gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K ++V+D +L +K  +  +E  GY      +G EA++ A++ + D++++D+ L  ++G E
Sbjct: 2   KALVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPILTGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +QI+E     ++P+I +TA     D+    + G + YI+KP ++      IK  I  
Sbjct: 62  VCQQIRE---FSDMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRR 117


>gi|119489827|ref|ZP_01622582.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
 gi|119454255|gb|EAW35406.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
          Length = 641

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+DN  N+ +  ++++  GY     ++G  AL   ++   D+I++D+ +  I+
Sbjct: 7   MKSKIIIVDDNSQNLGVLFNILDGLGYDVRVAQDGESALVKIKRDPADLILLDVMMPGIN 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E   ++K D  L +IP+I +TA +   D  +  + G   YI+KP S    +  I+ ++
Sbjct: 67  GFETCSRLKSDPSLAKIPIIFMTALSETIDRLKGLQLGAVDYITKPFSHDEVIARIQLHL 126


>gi|15596808|ref|NP_250302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9947577|gb|AAG05000.1|AE004589_3 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 651

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 67/117 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  +   ++ + GY      +G++A+  A + + D I+MD +L  + G   
Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+     + +P+IA+TA A++GD E   + G   Y++KP   +     ++++IG
Sbjct: 577 TREIRAQENGRRVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633


>gi|330980744|gb|EGH78847.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 645

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634


>gi|254994902|ref|ZP_05277092.1| response regulator PleD [Anaplasma marginale str. Mississippi]
          Length = 455

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D   N+KL +  +    Y  L   +G EA++LAR+  PD+I++D+ +  + 
Sbjct: 1   MTAKILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLAREKHPDLILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  ++++ D     IPV+ VTA     D        G + +++KPI+       I+  
Sbjct: 61  GYETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISAGADDFLTKPINDVALFSRIRSL 120

Query: 120 IG 121
             
Sbjct: 121 TR 122



 Score = 58.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+MI++ +++  +    +++          N  + + L      D+ I+D+      GL
Sbjct: 157 AKIMILDSDKVRSEHMNSVLQEYFQETAVLDNPSQDVNLQNAESYDLFIIDLNFGG-DGL 215

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMET 115
                 + ++  +  P++ +       D     R  + G   YI  P+  +  +  
Sbjct: 216 RFCSNFRSNNNTRYTPILVL--LDESDDIGILSRAFEIGISDYIMAPVDSNELLAR 269


>gi|288940436|ref|YP_003442676.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895808|gb|ADC61644.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 729

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED  +N ++ R++++  G       +G EA+ L+ +    +I+MD+Q+  + GL
Sbjct: 606 RRVLLVEDEPINQEIAREMLKDVGLCVDTADDGREAVRLSAERDYALILMDMQMPNMDGL 665

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+ I++      IP++A+TA     D E   + G + +++KP+        +++++
Sbjct: 666 EATRCIRQTPRGARIPIVAMTANVFAEDREHCLEAGMDDFLAKPVMPETLYGVVERWL 723


>gi|220908588|ref|YP_002483899.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
 gi|219865199|gb|ACL45538.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
          Length = 337

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 71/126 (56%), Gaps = 6/126 (4%)

Query: 1   MLK------KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI 54
           M+        V+IV+D+  ++ +  DL+ET+G+     R+G+ A+E      PD+I++D+
Sbjct: 1   MMIQSLESGTVLIVDDSPASLGILSDLLETAGFEVWVARSGISAIEKLNHALPDLILLDV 60

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            +  + G E  ++IK + +LQ++P+I +++ +   D+ +  + G   YI+KP      + 
Sbjct: 61  MMPGLDGFETCRRIKANEQLQDLPIIFMSSLSDTVDKVKGLQLGGVDYITKPFQQEEVLA 120

Query: 115 TIKKYI 120
            I+ ++
Sbjct: 121 RIRVHL 126


>gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 246

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---PDVIIMDIQLQE 58
           + ++++V+D           +   G+       G  A EL ++      D++++D  L  
Sbjct: 1   MARILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SGL + +Q+++    +  P++ +TA     D       G + Y+ KP  L   +  ++ 
Sbjct: 61  LSGLSLCQQVRQVD--RATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRA 118

Query: 119 YIGEA 123
            +  A
Sbjct: 119 LLRRA 123


>gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++V+D+   + L +D +E  GY  L   +G E L + +Q  PD++I D+ + ++ G
Sbjct: 10  SATILLVDDDPNLVLLVKDYLEMQGYRVLTAAHGNEGLAMLQQQTPDLVICDVMMPQMDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
                 +++ + L  +PV+ ++A     D  +  + G + Y+ KP      +  I+  +
Sbjct: 70  YSFVSAVRQQTHLSWLPVLFLSAKGQTHDRIKGLQTGGDVYLVKPFEPEELLAQIQALL 128


>gi|186685580|ref|YP_001868776.1| response regulator receiver modulated translation initiation factor
           IF-2 [Nostoc punctiforme PCC 73102]
 gi|186468032|gb|ACC83833.1| response regulator receiver modulated translation initiation factor
           IF-2 [Nostoc punctiforme PCC 73102]
          Length = 522

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 66/118 (55%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D   N+ L + ++E+ GY      +G  AL L ++  PD+II+D+++ E+ G E
Sbjct: 258 RILAVDDVADNLILIQTVLESEGYQIDLAADGTTALSLVKESPPDLIILDVKMPEMDGYE 317

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+ +  L  IP++ ++A+  +    +    G   +I KPI +   +  ++  + 
Sbjct: 318 VTRRIRNNHNLPYIPILLISAY-FEASVVQGLDIGANDFIRKPIDVDELLARVRSLLR 374


>gi|330899200|gb|EGH30619.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 619

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 491 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 550

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 551 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 608


>gi|313497378|gb|ADR58744.1| GltR_2 [Pseudomonas putida BIRD-1]
          Length = 241

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 54/120 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L +  +  SG+      +G            D++I+D+ L +  G 
Sbjct: 6   KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++      +P+I +TA + + D     + G + Y+ KP S       IK  +  
Sbjct: 66  SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125


>gi|107101043|ref|ZP_01364961.1| hypothetical protein PaerPA_01002073 [Pseudomonas aeruginosa PACS2]
 gi|254234711|ref|ZP_04928034.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
 gi|126166642|gb|EAZ52153.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
          Length = 651

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 68/117 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  +   ++ + GY      +G++A+  A + + D I+MD +L  + G   
Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+     +++P+IA+TA A++GD E   + G   Y++KP   +     ++++IG
Sbjct: 577 TREIRAQENGRQVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633


>gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G       +G +A+   R+ +PD++++D+ L  + 
Sbjct: 1   MKGRVLVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+ +S    +P++ +TA     D     + G + Y+ KP      +  ++  +
Sbjct: 61  GMEVCRRIRAESG---VPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
           V453]
 gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
           V453]
          Length = 1031

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            V++V+D+ +N+++ R L+    Y  L   NG++ALE  R  +  D++I D  +  +SGL
Sbjct: 698 TVLLVDDDPVNLQVLRSLLFAENYNLLTASNGVQALEHIRSGQGIDLVITDWMMPGMSGL 757

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--I 120
           ++ + ++E   L E+P++ +TA ++  D     + G   ++ KP+        ++    +
Sbjct: 758 QLCRTVREQHTLFELPILMLTARSLPEDVRTGLQAGANDFLRKPVDADELRARVRNLLEL 817

Query: 121 GEA 123
             +
Sbjct: 818 RRS 820


>gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 235

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED +   +     ++  GY     ++G   LE A++   D+I++D+ L EI+G+
Sbjct: 7   KRILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLMLPEINGI 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++      ++P+I +TA     D       G + YI KP ++   +  I+  +  
Sbjct: 67  EVCRRLR---PTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 123


>gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
 gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
          Length = 888

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 69/117 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN +N+K+ R L+  SG+       G +A++  R   PD+++MDIQ+  + GL 
Sbjct: 770 RILVVDDNAVNLKVTRALLRKSGFQVDIASRGEDAIDSIRASVPDLVLMDIQMPGMDGLA 829

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ +++D + + + +I +TA   K D +     G   Y++KPISL    E + +++
Sbjct: 830 TTRLLRQDPDFRHLVIIGLTANVSKEDRQACLDAGMNDYLTKPISLLKLSECLSRWL 886


>gi|313106625|ref|ZP_07792850.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310879352|gb|EFQ37946.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 651

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 67/117 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  +   ++ + GY      +G++A+  A + + D I+MD +L  + G   
Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+     + +P+IA+TA A++GD E   + G   Y++KP   +     ++++IG
Sbjct: 577 TREIRAQENGRRVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633


>gi|229095233|ref|ZP_04226225.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688092|gb|EEL41978.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 223

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++ ++G+EALEL  Q K D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218892432|ref|YP_002441299.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218772658|emb|CAW28443.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 651

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 68/117 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  +   ++ + GY      +G++A+  A + + D I+MD +L  + G   
Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+     +++P+IA+TA A++GD E   + G   Y++KP   +     ++++IG
Sbjct: 577 TREIRAQENGRQVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633


>gi|26987748|ref|NP_743173.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982439|gb|AAN66637.1|AE016291_6 DNA-binding response regulator GltR [Pseudomonas putida KT2440]
          Length = 241

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 54/120 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L +  +  SG+      +G            D++I+D+ L +  G 
Sbjct: 6   KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++      +P+I +TA + + D     + G + Y+ KP S       IK  +  
Sbjct: 66  SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125


>gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D +L +K  R  +E  G       +G EA+ LA+Q + DV+++D+ L +  G
Sbjct: 1   MASVLVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKYDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+E     E+P+I +TA     D+    + G + YI+KP ++      IK  + 
Sbjct: 61  YEVCQAIRE---FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 229

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++VED+    +L        GY    T +G EAL +A +  PD+II+D  ++  SG
Sbjct: 3   SAKLILVEDDPALAELLEFRFANEGYQVRVTADGDEALLMASEDVPDLIILDWMIEGTSG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++ D     +P+I +TA   + D  R  + G + Y++KP S    +  +   + 
Sbjct: 63  IEVCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|317126999|ref|YP_004093281.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315471947|gb|ADU28550.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + ++IVED++   ++  D +   G+       GME LE  +Q+  D++++D+ L E+ G
Sbjct: 4   TRNILIVEDDKDIARIVVDHLRKEGFHVTWASTGMEGLEDFKQNSFDLVLVDLMLPEMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K I+ +S    +P++ ++A      + R    G + Y++KP SL      I  ++ 
Sbjct: 64  FTLCKTIRLES---NVPLLIISAKQEDASKIRGLDLGADDYLTKPFSLIELSARIHSHLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|325981774|ref|YP_004294176.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325531293|gb|ADZ26014.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 242

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     +L    ++ +G++ L   +   A  L     PD++++D  L +I+
Sbjct: 1   MAVTILIVEDELAIQELIALNLKKAGHMVLCAGDATHAKLLINNVLPDLVLLDWMLPDIT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE  + ++ +   + IP+I +TA   + D+    + G + YI+KP S    +  IK  +
Sbjct: 61  GLEFARSLRREERTKTIPIIMLTARIQENDKIAGLEAGADDYITKPFSPRELLARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 245

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +  + L    ++ +GY       G+ A  +A   K D I++D+ L  + G+
Sbjct: 8   KKILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLMLPGMDGI 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EIT+++++  E  E P+I +TA   + D+    + G + Y++KP S    +  IK     
Sbjct: 68  EITRRLRQ--ERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRR 125


>gi|197287013|ref|YP_002152885.1| DNA-binding transcriptional regulator CpxR [Proteus mirabilis
           HI4320]
 gi|227354741|ref|ZP_03839159.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194684500|emb|CAR46276.1| two component system response regulator [Proteus mirabilis HI4320]
 gi|227165184|gb|EEI50012.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 232

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL+L      D++++DI +   +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVLATDGEQALKLLDA-SIDLLLLDIMMPRKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++++ +    PVI +TA     D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IETLKELRQNFQT---PVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|254239958|ref|ZP_04933280.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
 gi|126193336|gb|EAZ57399.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
          Length = 651

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 68/117 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  +   ++ + GY      +G++A+  A + + D I+MD +L  + G   
Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+     +++P+IA+TA A++GD E   + G   Y++KP   +     ++++IG
Sbjct: 577 TREIRAQENGRQVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633


>gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++I+ED E   +     +   GY   +  +G   LELA   + D+I++D+ L +++
Sbjct: 1   MSQTILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVMLPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+       +P+I +TA     D+      G   YI+KP ++   +  I+  +
Sbjct: 61  GTEVLRRIR---RTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNAL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 239

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D     +L    +  +G+  +   NG +AL  A  H PD+ ++D+ L ++ G 
Sbjct: 11  AKLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVMLPDMDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++     +  PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 71  TVTRRLRASG--KHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128


>gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 229

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED      L R  +   G+      +G+EA+  A +   DVI++D+ L  + G E
Sbjct: 2   RVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLMLPGLDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        PV+ ++A +   D  R    G + Y++KP S       I+  I  
Sbjct: 62  VCRRLRAAGRWA--PVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRR 118


>gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 248

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      +    ++  G  A Q  +G+EAL L RQ KPD++++DI L  + GL++
Sbjct: 14  VLVVEDEPGIATILSAYLQRDGLRAHQAHDGLEALRLFRQLKPDMVLLDIHLPGMDGLDL 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I+ED +    PVI VTA A   D+    + G + Y+ KP S    +  ++  +  
Sbjct: 74  LRAIREDGQT---PVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRR 128


>gi|229101340|ref|ZP_04232084.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682045|gb|EEL36178.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++ ++G+EALEL  Q K D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330960502|gb|EGH60762.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 783

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE       D+++MD  +  + G 
Sbjct: 660 ARVLLVEDNPVNQLVAKGILGKLGCEVVISSHGGEALEQLEHSHFDLVLMDCNMPVMDGY 719

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +  +  + ++I
Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 777


>gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V++V+D    +++   L+E+ G+      NG  ALE+       +II+D+ + +ISG 
Sbjct: 6   KNVLVVDDEPKILEVVCLLLESKGFRTFPAENGQRALEIFESENISLIILDLMMPDISGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I++ S    +P+I +TA   + D       G + Y+ KP  L      I+  +  
Sbjct: 66  EVCRAIRKKSR---VPIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLRR 122


>gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV+I+ED+E   +L    ++   Y     ++G E + + + + P ++++DI L  + 
Sbjct: 1   MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI ++I+    L E P+I ++      D+ +    G + Y++KP   +     IK  +
Sbjct: 61  GYEICQKIR---MLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|224538431|ref|ZP_03678970.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519936|gb|EEF89041.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1426

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDNE       ++++   Y  L+  +G   L+L     PD+II DI +  + G+E+
Sbjct: 1179 ILIVEDNEELRHFLVNMLQKD-YRILEAADGKSGLDLTVSAMPDLIISDIMMPVMDGIEL 1237

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             + +K++ ++  IP I ++A A   D  +  + G + YI+KP S S     I   +   +
Sbjct: 1238 LEAVKKNHDISHIPFILLSAKASLDDRIQGLEYGADDYITKPFSSSYLKARISSLLKQRD 1297

Query: 123  A 123
            A
Sbjct: 1298 A 1298


>gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 229

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +L +D +E SG+      +G E L+ A +   D++I+D+ L    G
Sbjct: 1   MSKILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDYDLLILDLMLPGTDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+++E   ++  P+I V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKKVRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|188532256|ref|YP_001906053.1| DNA-binding transcriptional regulator CpxR [Erwinia tasmaniensis
           Et1/99]
 gi|188027298|emb|CAO95141.1| Two-component response regulator [Erwinia tasmaniensis Et1/99]
          Length = 233

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  L   +G +AL L   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALALL-DNTVDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 246

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    +K+    +  +GY  L  ++G +ALE+  +  PD++++D+ L ++ G  +
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +S    +P+I +TA     +       G + Y++KP S       I   +  
Sbjct: 64  CRRIRAESC---VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRR 118


>gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED E  + L    ++  G+     R+G  AL LA+  +PD+I++D+ L  + 
Sbjct: 1   MAATILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI ++++ D       V+ +TA A + D+      G + Y++KP S    +  +K  +
Sbjct: 61  GLEICRRLQRDGGPY---VLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 236

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+E   +L    +    Y      +G  AL+     KP++I++D+ L  + G 
Sbjct: 5   QRILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLMLPGMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+      ++P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREIR---TTSQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|124024913|ref|YP_001014029.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959981|gb|ABM74764.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 265

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED++    L    +E +G+   +  +G++   LA Q+ PD+I++D+ L ++ GL +
Sbjct: 5   ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D     IP++ +TA     D+      G + YI+KP  L      IK  +  
Sbjct: 65  CQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRR 122


>gi|163938509|ref|YP_001643393.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010010|ref|ZP_04167225.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229165524|ref|ZP_04293304.1| Two-component response regulator [Bacillus cereus AH621]
 gi|163860706|gb|ABY41765.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228617972|gb|EEK75017.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228751292|gb|EEM01103.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 223

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EALEL  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 230

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I +DN   +K+ +  +E  G+  +   NG EAL+      P ++++DI +  I 
Sbjct: 1   MDKNILIADDNIEIIKILKPYVEKEGFTVVSALNGKEALDKFDVCNPQIVLLDIMMPIID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+  S     P+I +TA +   D+      G + YI KP S    +  IK  +
Sbjct: 61  GMEVCKSIRFKS---NTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 239

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D      L    +  +G+       G EA+  A +++PD++++D+ L ++ G 
Sbjct: 11  ARLLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVMLPDMDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T+++++  E    P++ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 71  TVTRRLRDRGEKY--PILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128


>gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
 gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
          Length = 228

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED++   +L +  + T  Y      +G+E ++   +   D+I++D+ +  ++
Sbjct: 9   MNYHILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLN 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K I+  S    IP+I +TA   + D+ +    G + YI+KP S  + +  ++  +
Sbjct: 69  GFEVAKMIRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVL 125

Query: 121 GEA 123
             +
Sbjct: 126 RRS 128


>gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 227

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 67/125 (53%), Gaps = 3/125 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M KK   +++V+D    +++    + + GY  +   NG +A+++A++ KP +II+D+ + 
Sbjct: 1   MKKKDIQILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKKPHLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  +QI++  +++   +  +TA      +      G + YI+KPI   + +  +K
Sbjct: 61  EMDGIEACEQIRKMPDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 255

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++V+D     ++    ++ SGY  +   +G +ALEL     PD+I++D+ L ++ G 
Sbjct: 13  ATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 73  AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 129


>gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei]
 gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED+    +  +  +   G++     +G   +E+  +H+PD++++D+ L  + G
Sbjct: 1   MAEVLVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRHRPDLVVLDLMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++++       +P+I +TA     D     + G + Y++KP+   +    I+  + 
Sbjct: 61  FETCRRMRAAGP---VPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|77460719|ref|YP_350226.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384722|gb|ABA76235.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 227

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++ED+  ++ PVI +TA     D  +  K G + Y+ KP +LS     ++  +  
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLVKPFALSELAARVEAVMRR 119


>gi|303241292|ref|ZP_07327797.1| response regulator receiver modulated diguanylate cyclase
           [Acetivibrio cellulolyticus CD2]
 gi|302591131|gb|EFL60874.1| response regulator receiver modulated diguanylate cyclase
           [Acetivibrio cellulolyticus CD2]
          Length = 310

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 67/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++I++D E   KL  D++ ++ Y  +   NG++ ++  R+ KPD++I+D+ +  + G 
Sbjct: 4   KKILIIDDTEFMTKLITDILSSADYDVVIASNGLQGIQKVREEKPDLVILDVVMPGMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K +++D     +P+I +TA   + D+    + G + YI KP +    +  ++  +  
Sbjct: 64  EVCKILRDDESNNLMPIIMLTAQDNEDDKLAGLEIGADDYIIKPFNGRELVSRVRNTLKR 123


>gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 232

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D+     L    +E  GY      +G   +E  +   P ++I+DI +    GLE+
Sbjct: 7   VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + ++       +PVI +TA     D     + G + YISKP +    +  IK  +  A
Sbjct: 67  LRDLR---PHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRA 122


>gi|152970359|ref|YP_001335468.1| putative transcriptional regulatory protein, C-terminal [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206578894|ref|YP_002238379.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288935358|ref|YP_003439417.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290509408|ref|ZP_06548779.1| two-component system, OmpR family, response regulator [Klebsiella
           sp. 1_1_55]
 gi|150955208|gb|ABR77238.1| putative transcriptional regulatory protein, C-terminal [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206567952|gb|ACI09728.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288890067|gb|ADC58385.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289778802|gb|EFD86799.1| two-component system, OmpR family, response regulator [Klebsiella
           sp. 1_1_55]
          Length = 246

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L  D +E SGY A    NG     + + H+ D+I++DI +    GL 
Sbjct: 6   HILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ + + Q+IPV+ +TA     D     + G + Y+ KP      +  IK  +  
Sbjct: 66  LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 123


>gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR
          Length = 214

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED +   +     +    Y      +G + L+ A  H  D+II+D+ L  I+G
Sbjct: 1   MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++    Q  P+I +TA +   D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 225

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 235

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED E        L+   G+  +   +G  ALE    +  D++++D+ L  +SG
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ KQ++       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|119899035|ref|YP_934248.1| DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119671448|emb|CAL95361.1| probable DNA-binding response regulator [Azoarcus sp. BH72]
          Length = 252

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L  D +E  G       +G E      +H+ D+I++D+ L    GL 
Sbjct: 7   HILIVDDDRDIRSLLADYLEKQGLRCTTAADGREMKAALERHRVDLIVLDLMLPGEDGLT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++        P++ +TA     D     + G + Y+ KP         ++  +  A
Sbjct: 67  LCRNLRAGGSHANTPILMLTARGEDMDRIIGLEMGADDYLPKPFVPRELYARVRAILRRA 126


>gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 245

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E    A+Q  PDV+I D+ +  + G  
Sbjct: 20  RLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFSKAQQMLPDVVITDVMMPRLDGYG 79

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + K+++ D  L   PVI +TA  M  D  +    G + YI KP      +  ++  
Sbjct: 80  LLKKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 135


>gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 224

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+E    +    +    Y      +G +  E       D+I++D+ L +++G+ 
Sbjct: 2   RILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVMLPKLNGIG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++      IPV+ +TA     D+      G + Y+ KP  +   +  I+  +  
Sbjct: 62  LCQRIRQSG--CSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRR 118


>gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51]
 gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++IVED+    +L RD +E +G+    + +G+E L   + ++ D+II+DI L  + G
Sbjct: 1   MKRILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LEI K +KED   ++IPV+ V+A   + D+ +    G + YI+KP S    +  +K +I
Sbjct: 61  LEILKSMKED---KDIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHI 116


>gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 230

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D++  +KL    +   G+  +   +G EAL    ++  D II+DI +  + 
Sbjct: 1   MQKKILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + I++       P++ ++A     D+    + G + Y++KP S+      I+   
Sbjct: 61  GLDVCRSIRKS---YNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANF 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 3 str. Tulya]
 gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 228

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 1   MSQVPRIAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 61  VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120

Query: 119 YIGEA 123
            +  A
Sbjct: 121 MLRRA 125


>gi|237803508|ref|ZP_04591093.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025490|gb|EGI05546.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 462

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 71/118 (60%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VEDN +N  + + ++   G       +G+EA+  A   K  +I+MD +L  + G 
Sbjct: 334 RRILLVEDNPVNRTVVQAMLHNLGCEVEVAVDGVEAVAKAGVGKYALILMDCRLPVMDGY 393

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 394 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 451


>gi|254241493|ref|ZP_04934815.1| hypothetical protein PA2G_02189 [Pseudomonas aeruginosa 2192]
 gi|126194871|gb|EAZ58934.1| hypothetical protein PA2G_02189 [Pseudomonas aeruginosa 2192]
          Length = 786

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 63/116 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + L+   G       +G+ AL++  +   D+++MD  +  + G E
Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEERPIDLVLMDCNMPVMDGYE 723

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+QI++      +P+IA+TA A+  + ER R  G + Y++KP         + ++
Sbjct: 724 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779


>gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 234

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D++   +  R  +  +GY  +   +G EAL+L  + +PD+ I+D+ + +  GL+
Sbjct: 5   KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGLD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   +  ++P++ +TA     +       G + Y+ KP +L   +   +     A
Sbjct: 65  VCRELRSHGD--DLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRA 122


>gi|218460387|ref|ZP_03500478.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Kim 5]
          Length = 218

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D      +    +E +G  +   R G EA+   R+   D+II+DI + ++ 
Sbjct: 1   MAPRILVVDDEPHIRDVICFALERAGLTSTAVRTGTEAMAAFRRGNIDLIILDIGMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI++      +P++ ++A   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|167765313|ref|ZP_02437426.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183]
 gi|167696941|gb|EDS13520.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183]
          Length = 1354

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN+         +    +  L+  NG EALE  + H+ D+II D+ +  + G++
Sbjct: 1105 TILIVEDNQEIRHYLSSGLAAL-FNILEAGNGEEALEKLKNHEADIIITDVMMPVMDGIK 1163

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K IK++     IPVI ++A     D+    + G + YISKP S+++    I+  + 
Sbjct: 1164 LCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFSIAVLTSKIQNMMR 1221


>gi|260172987|ref|ZP_05759399.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. D2]
 gi|315921265|ref|ZP_07917505.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695140|gb|EFS31975.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1342

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IV+DNE      R  +E   Y      NG EA E+ ++  PD++I D+ + ++ G E+ 
Sbjct: 1096 LIVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEELPDLVISDVMMPQMDGNELC 1154

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + IK+D     IPVI +TA      +    + G + Y++KP +++I +  I+K I
Sbjct: 1155 RLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLI 1209


>gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K++IV+D+    +L    +E  G+   +  +G++AL    + K D+ I+DI +  + 
Sbjct: 1   MIPKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVDMAILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|329889206|ref|ZP_08267549.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328844507|gb|EGF94071.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 125

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/122 (69%), Positives = 108/122 (88%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL+++ GY  LQTR G++AL +AR+H+PD+I+MDIQL EIS
Sbjct: 1   MSKKVLIVEDNELNMKLFHDLLDSQGYEVLQTREGLQALAIAREHRPDLILMDIQLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D EL  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ET+++++
Sbjct: 61  GLEVTKWLKDDEELNHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVISFLETVRRHL 120

Query: 121 GE 122
           G+
Sbjct: 121 GQ 122


>gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 221

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     +  ++++ SGY+     +G+ A+E+ R+   D+II+D+ L +I 
Sbjct: 1   MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S    +P+I +TA   + DE +  +   + YI+KP S+S+ ++ ++  +
Sbjct: 61  GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|309790587|ref|ZP_07685142.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Oscillochloris trichoides DG6]
 gi|308227389|gb|EFO81062.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Oscillochloris trichoides DG6]
          Length = 332

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+     +   +++   Y  +   NG+EAL+      PD+I++D+ +  + 
Sbjct: 1   MSAKILVVDDDPAIRDILVRILQRENYTPITATNGLEALDKVVHESPDLILLDVTMPILD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K++     IPV  +T    +    R  + G + +++KPI  S+    ++  +
Sbjct: 61  GFEVCRRLKDNERTALIPVTMLTGLDDREHRRRGVEVGADDFLTKPIEQSLLRARLRSQL 120

Query: 121 G 121
            
Sbjct: 121 R 121


>gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
 gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
          Length = 233

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + ++++VED+    +L     +   +  + T +G EAL LA+++ PD++++D  ++ +
Sbjct: 1   MARARMLLVEDDAALAELLIWHFKREDFEVVHTVDGEEALLLAQENMPDIVLLDWMVESL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ ++++  +    +P+I +TA   + D  R  + G + Y++KP S    +  +   
Sbjct: 61  SGIEVCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|291539027|emb|CBL12138.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 224

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++V+D +    + R   E  GY   +  +GMEA+E+ R+   D+II+D+ + E+ G
Sbjct: 1   MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++I++    +EIPVI ++A   + D+    + G + Y+ KP S    M  +K  I 
Sbjct: 61  FSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED     +L    +   G+  +   +G EA+ L   H+ D+ ++D+ +  + G
Sbjct: 1   MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  K+++E      +PVI +TA + + D       G + Y+SKP S    +  I+  + 
Sbjct: 61  FDFVKKLRE---TSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. 83/13]
 gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M28]
 gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M5-90]
          Length = 228

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 1   MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 61  VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120

Query: 119 YIGEA 123
            +  A
Sbjct: 121 MLRRA 125


>gi|254430750|ref|ZP_05044453.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197625203|gb|EDY37762.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 254

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+     L    +E  G+   +  +G++   LA Q  PD++++D+ L ++ GL +
Sbjct: 5   ILLIEDDSDMRDLVAGHLEHGGFDVQRAEDGIKGQALALQFTPDLVLLDLMLPKVDGLTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D     IP++ +TA A   D+      G + Y++KP  L      +K  +  
Sbjct: 65  CQRLRRDERTARIPILMITALADTKDKVSGFNSGADDYLTKPFDLEELTVRVKALLRR 122


>gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 234

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   K++IV+D +    L    +   GYI L+  NG+EALEL + +   +II+DI + ++
Sbjct: 1   MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E   +I+E+   + +P+I ++A +   D+      G + YI+KP +    +  +K  
Sbjct: 61  DGIEACMKIREE---KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
 gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
          Length = 239

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D    + L    +  +GY      +G +ALE+AR+ +P +I++D+ L  +SG +
Sbjct: 10  RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ D   +E+ V+ +TA   + D  R    G + Y++KP S +  +  +   +  
Sbjct: 70  VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRR 128


>gi|212703362|ref|ZP_03311490.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098]
 gi|212673208|gb|EEB33691.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098]
          Length = 234

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDNE  +      +E  GY     RNG   LE+A   + D++++DI L  + G+ +
Sbjct: 6   VLLVEDNEDILANLYAYLEPLGYELDCARNGRTGLEMAASGQFDLVVLDIMLPGLDGISL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++E+  +Q +PVI +TA     D       G + Y+ KP +L      I+  +  
Sbjct: 66  CRALREEHGVQ-VPVIMLTARDTVADRVLGLDAGADDYLVKPFALRELEARIRALLRR 122


>gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 235

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED+    +L +  +   G+      +G+ A+   ++ +PD+II+D  L  + GLE+
Sbjct: 3   ILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAITAYQELQPDLIILDWMLPGLDGLEL 62

Query: 65  TKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++ +    ++  ++ +TA   + D       G + Y++KP S    +  ++  +  
Sbjct: 63  CARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARVRALLRR 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+E       + +    Y+     +G EA EL      D+I++D+ L ++ G+ 
Sbjct: 2   KILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVMLPKMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  S   + P++ +TA     D       G + Y+ KP +L      ++  +  
Sbjct: 62  LCRKLR--SGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRR 118


>gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 229

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E        ++   GY      +G    +LA     D++I+D  L E SGL+
Sbjct: 2   RILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + +++    +++PV+ +TA     D  +    G + Y+ KP  L   +  ++  +  +
Sbjct: 62  LCRSVRQRD--RQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRS 119


>gi|299135154|ref|ZP_07028345.1| response regulator receiver protein [Afipia sp. 1NLS2]
 gi|298590131|gb|EFI50335.1| response regulator receiver protein [Afipia sp. 1NLS2]
          Length = 121

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/121 (67%), Positives = 105/121 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY  + T NG EAL LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYQTVGTSNGREALRLAREHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ IK+D+EL+  PV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET+++++
Sbjct: 61  GLEVTRWIKDDAELRATPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
 gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
          Length = 226

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL  D +   GY  L+  +G EAL++  +Q    ++++DI +  I+G 
Sbjct: 5   KILVVDDESRMRKLVHDFLAREGYEVLEAGDGEEALDIFYQQKDIALLVLDIMMPRINGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++     ++P+I +TA   + DE      G + YISKP S  I +  +   +  
Sbjct: 65  EVCREIRQ---TSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRR 121

Query: 123 A 123
           A
Sbjct: 122 A 122


>gi|257059714|ref|YP_003137602.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 8802]
 gi|256589880|gb|ACV00767.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 8802]
          Length = 379

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+     L +  +  SGY  +   NG + L  A++  PD+II D  +  ++G
Sbjct: 1   MAQILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKAQELCPDLIICDWVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+  Q+K   EL     I +T+     D  +    G + ++ KPI ++  +  ++  + 
Sbjct: 61  LEVCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSGLR 120


>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 236

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED+   ++L    +  +G+      +G  AL  AR H+PD++++D+ L ++ G 
Sbjct: 11  ARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPDLDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++E       PV+ +TA     D+ R    G + Y++KP SL      I+  +  
Sbjct: 71  EVIRMMRE--GGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 128


>gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
 gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
          Length = 231

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +MIVED++   +L R  +   GY  +Q  +G +AL L  + KPD+I++D+++  + GL
Sbjct: 4   ATIMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMPGMDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+       +P++ V+       + +  + G + YI+KP   +     I+  +  
Sbjct: 64  EVCRRIR---LKTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRR 120


>gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
 gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
          Length = 228

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 1   MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 61  VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120

Query: 119 YIGEA 123
            +  A
Sbjct: 121 MLRRA 125


>gi|302339427|ref|YP_003804633.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301636612|gb|ADK82039.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 515

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 68/117 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D  +N  L    ++  GY+  +  NG +ALE   Q  PD+I++D+ + +++G  
Sbjct: 9   HVLVVDDEAINRLLLVTALKKRGYLPEEAANGKDALEKVEQKPPDLILLDVMMPDLTGFG 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +KE  E  +IPVI VTA   + D E   K G + +ISKP++++  M  ++  +
Sbjct: 69  VCRSLKERKETADIPVILVTALHSREDIEEGIKAGADEFISKPVNINELMVRVRTLL 125


>gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
 gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
          Length = 231

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 70/124 (56%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+K+ ++I++D++  ++L    +   GY   +  +G EAL +   H+ D++I+DI + + 
Sbjct: 1   MMKRNILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLHQIDLMILDIMMPKR 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +GLE+ +Q++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  
Sbjct: 61  NGLEVCQQVREEN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKAL 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 243

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
           K +++VED           ++  GY      +G  ALE LAR+  PD I++D+ L +ISG
Sbjct: 11  KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K ++E    +++PVI VTA   + D     + G + Y+ KP S+   M  I+  + 
Sbjct: 71  TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130

Query: 122 E 122
            
Sbjct: 131 R 131


>gi|298490278|ref|YP_003720455.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298232196|gb|ADI63332.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 374

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D   N+ L R L+E+ GY      +G  AL+   Q  PD+I++D+ +  + G E
Sbjct: 11  RILAVDDTRDNLILVRTLLESEGYKIDLVSDGATALQKVAQSPPDLILLDVMMPGMDGYE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+   +L  IP++ +TAF  +         G + +I KP      +  ++  + 
Sbjct: 71  VTRRIRNCPDLNYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLR 127


>gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19]
 gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 6 str. 870]
 gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 5 str. 513]
 gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 3 str. 686]
 gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M163/99/10]
 gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis B2/94]
 gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M644/93/1]
 gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M13/05/1]
 gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 4 str. 292]
 gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M292/94/1]
 gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           neotomae 5K33]
 gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 3 str. Ether]
 gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 9 str. C68]
 gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
 gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
          Length = 228

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 1   MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 61  VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120

Query: 119 YIGEA 123
            +  A
Sbjct: 121 MLRRA 125


>gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161]
 gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99]
          Length = 228

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 1   MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 61  VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120

Query: 119 YIGEA 123
            +  A
Sbjct: 121 MLRRA 125


>gi|209884910|ref|YP_002288767.1| cell division response regulator DivK [Oligotropha carboxidovorans
           OM5]
 gi|209873106|gb|ACI92902.1| cell division response regulator DivK [Oligotropha carboxidovorans
           OM5]
          Length = 121

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 81/121 (66%), Positives = 105/121 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY  + T NG EAL LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYQTVGTSNGREALRLAREHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ IK+D+EL+  P++AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET+++++
Sbjct: 61  GLEVTRWIKDDAELRATPIVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 237

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+    +L    +    +      +G EAL+L    +P+++++D+ L  I G 
Sbjct: 5   QRILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++  S+   +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCRELRASSQ---VPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|300866717|ref|ZP_07111401.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300335317|emb|CBN56561.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 401

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 65/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN+ N+ +  DL++ SG+  L   NG  A++   +  P +I++D+ +  I G E 
Sbjct: 11  ILIVDDNQNNLDVLFDLLKKSGFKVLVALNGESAIKQIERIHPTLILLDVMMPGIDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +   Q+IPVI +TA +   ++ +  + G   YI+KP      +  +  ++
Sbjct: 71  CRRLKTNPTTQDIPVIFMTALSETVNKVQGFQVGAVDYITKPFQYEEVLSRLNTHL 126


>gi|262282112|ref|ZP_06059881.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262262566|gb|EEY81263.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 229

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ ++++ ED     ++    +E  GY      NG EAL LA Q+  +VII+DI +  ++
Sbjct: 1   MM-RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTYNVIILDIMMPIMT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE  K+I+         VI +TA A   D       G + Y++KP SL   +  ++   
Sbjct: 60  GLEALKEIRATGNTTH--VIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMA 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|71905989|ref|YP_283576.1| PAS [Dechloromonas aromatica RCB]
 gi|71845610|gb|AAZ45106.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 513

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K KV+ V+DN  N+ + +  ++  G+  +   NG EA+       PD++++DI +  +
Sbjct: 5   MNKMKVLAVDDNRTNLHILQVFLKKLGHEVVLAENGEEAVRRFETDAPDLVLLDIMMPVM 64

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            G E  ++IK  +  +  PVI ++A     +       G + Y++KPI+  +    ++ 
Sbjct: 65  DGFEAARRIKAMTRDRWTPVIFLSALNRDENLVEGLDAGADDYLTKPINFVVLEAKLRS 123


>gi|300786407|ref|YP_003766698.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299795921|gb|ADJ46296.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1516

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V+IV+D+  N+     ++E  G   L   +G + +E    H   D+I+MD+ + E+ G
Sbjct: 1396 RTVLIVDDDPRNVYALTGILELHGMHVLHAEDGRKGVETVASHPGIDLILMDVMMPEMDG 1455

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+   E   IP++AVTA AM GD E+    G   Y++KP+     +  IK+++
Sbjct: 1456 YTATAKIRAMPEHAGIPIVAVTAKAMPGDREKSLASGATDYVTKPVDADDLIARIKRHV 1514



 Score = 36.6 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 26/138 (18%)

Query: 3    KKVMIVE----------------DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK 46
            +++++VE                D   +  +    +  +    +      EA        
Sbjct: 1232 RRLLVVEERQHGLLTLVAESAAADLADSRDI---GLSPADVEVVTAVGTQEAAAALATDA 1288

Query: 47   PDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE----AY 102
               +++D+ L E +       ++ DS L+ +PV+A  +  + G+ E++ +   +      
Sbjct: 1289 YHCVVLDLDLPERTAFTFLDAMQGDSALRLVPVLAHNSRRLDGELEQLVQSRADVPSLEV 1348

Query: 103  ISKPISLSIFMETIKKYI 120
            +S    L    E I  ++
Sbjct: 1349 LS---GLDELRERIALHL 1363


>gi|87120074|ref|ZP_01075970.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86164776|gb|EAQ66045.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 244

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D     +L  + +   GY      NG  AL    +  PD+I++DI + E+ 
Sbjct: 17  MSETILVVDDKSNVQQLLSEFLTGHGYQVRLASNGKAALLALEERVPDLILLDIMMPEMD 76

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G      +++     ++PVI VTA   +GD  +  + G + Y+ KP  LS  +  IK  +
Sbjct: 77  GYGFIHTMRQ---THDLPVIMVTAKQHEGDLIKGFELGADDYLIKPFKLSELLVRIKAVL 133

Query: 121 GE 122
             
Sbjct: 134 RR 135


>gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 223

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EALEL  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           ++  G+      NG +  +LA+    D++++DI + +++G
Sbjct: 1   MAKILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEPFDLLVLDIIMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ +Q ++     + PVI +TA     D  +    G + Y+ KP S       I   + 
Sbjct: 61  LDLCRQYRQLYGY-DSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALLR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU]
 gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900]
 gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2]
 gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 228

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +M+VED      L RD +E +G+      +G +A    +Q KP+++I+D+ +  + G
Sbjct: 1   MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +   +L    +  +GY  +++ N  +AL    +  PD+II+DI +  + G
Sbjct: 1   MNKILIVEDEDALRELIAFNLTKAGYDVIESENANDALIFIEEITPDLIILDIMMPGLKG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + +K   +   IPVI ++A + + D     + G + YI+KP S+ + +  IK  + 
Sbjct: 61  TQLLQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILLR 120

Query: 122 E 122
           +
Sbjct: 121 K 121


>gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+M+ +D+   + +    ++  GY  ++  +G +A++  R+  PD++I+DIQ+ ++ G E
Sbjct: 2   KIMVADDDRDMVDMLSYWLKGHGYEVIRAFDGEQAIKRWRESLPDLVILDIQMPKLDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ ++      V+ +TA   + DE R  + G + Y+ KP S    +  IK  +  A
Sbjct: 62  VCRQMRNETNS---MVLILTAHDREDDEVRGLELGADDYLRKPFSPRQLLARIKAVMRRA 118


>gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
          Length = 222

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+        D +E SGY  +   NG EAL+L  +H+P +I+ DI + E+ 
Sbjct: 1   MPLTLLVVDDDLGTRLSISDYLEMSGYFVISATNGQEALQLVEKHQPHLIVTDIAMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+++     + +PVI +TA     +  R  + GC+ Y+ KP  L      I+  +
Sbjct: 61  GFELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLL 120

Query: 121 GEA 123
             +
Sbjct: 121 ERS 123


>gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 236

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63
           ++IV+D     ++    ++ +G+  LQ  +  +A ++    +P +I++D  +   +SG++
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGGVSGVD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K D  L EIPVI +TA   +  + +    G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125


>gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 229

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +  +   +D  E  GY  +   NG EA+E   +   D+I++DI +  I 
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+   +    P+I ++A   + D+ +    G + YI KP S+      ++ ++
Sbjct: 60  GFQICQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 237

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     +G  AL+L  Q+   ++I+D+ + ++
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   +P++ +TA   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|300022887|ref|YP_003755498.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299524708|gb|ADJ23177.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1897

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV++V+D+  N+     L+E  G   L    G+EA+E        +++MDI + E+ G 
Sbjct: 1778 RKVLLVDDDARNIFALSSLLERRGMNVLTATTGLEAIETLNSTDVSIVLMDIMMPEMDGY 1837

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  ++I+   + Q +P+IA+TA AMKGD E+  + G   Y++KP+     +  ++ ++  
Sbjct: 1838 QTMQRIRGSDKHQRLPIIALTAKAMKGDREKCLEAGASDYLAKPVDTEQLLSALRMWLHR 1897



 Score = 99.0 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED+    K+  D    +G+  +    G++AL LA  + P  I +DI L +I G  + 
Sbjct: 1513 LIVEDDPRYAKILIDAARKTGFKGIVCHRGVDALSLATDYNPTAISLDIHLPDILGWSVL 1572

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             Q+K +   + IPV  VT   +  D       G  +Y++KP+        +++ 
Sbjct: 1573 SQLKHNPLTRHIPVQVVT---LDDDRHHGLARGAFSYLTKPLETDALKSALRRI 1623



 Score = 97.9 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++IV+D+        +L++          +G +AL+  +++  D +++D++L ++SG 
Sbjct: 1632 KRLLIVDDDSAERMSIAELLKNDDVEIFTAADGADALKKLKENPIDCVVLDLKLPDMSGF 1691

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            EI +Q+     +++IPV+  T   +  +E+   +      + K + S    ++
Sbjct: 1692 EILEQMCGSPAMRDIPVVVFTGRELSNEEDHKIRQLARTVVVKGVESPERLLD 1744


>gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 234

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D E  + + R  +E  GY  +   +G +AL+L  ++ P +I++DI +    G
Sbjct: 1   MYTILLADDEESILDVCRRYLELEGYRVITATDGQDALKLVNEYSPHLIVLDIMMPIQDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +Q++     ++ P+I +TA   + D       G + Y+ KP S    +  +   + 
Sbjct: 61  WHVAEQVR---VSRDTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
 gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I ED+     L R  +E  G+  L+  +G  AL LAR+H PD+ I+DI +  ++
Sbjct: 1   MNPLILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTALVLAREHAPDMAILDIMMPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T+ +++     EIP++ ++A +   D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFELTRALRK---YSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|78356985|ref|YP_388434.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219390|gb|ABB38739.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 363

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 5/124 (4%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQL 56
           M+K+   ++IV+DN +N+ + + ++E   +      NG EALELA    KPD+I++D+ +
Sbjct: 1   MMKRTNRILIVDDNHVNILILKQILEQE-HQVFAAVNGYEALELASGPMKPDIILLDVLM 59

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            E+ G E+ +++KE+ E ++IPV+ VT    + DE      G   YI KP+  SI +  +
Sbjct: 60  PEMDGYEVCRRLKENDETRDIPVLFVTTQGEEEDEAAGLALGAVDYIVKPVRPSIVLARV 119

Query: 117 KKYI 120
           + ++
Sbjct: 120 RNHL 123


>gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 253

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++V+D     ++    ++ SGY  +   +G +ALEL     PD++++D+ L ++ G 
Sbjct: 11  ATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVMLPKLDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     ++      G + Y+ KP S       I   +  
Sbjct: 71  AVCRRLRAESC---VPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRR 127


>gi|330973454|gb|EGH73520.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 645

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 69/118 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  AR     +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVMKARAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634


>gi|300868139|ref|ZP_07112773.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300333874|emb|CBN57953.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 626

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+  N+ +  D +E  G+      +G  AL+  +   PD+I++DI +  + G E 
Sbjct: 11  VLVVDDHASNLAVLSDYLEQVGFEVWVASDGESALQAVQYEAPDIILLDIMMPCLDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +   ++IP+I ++A +   D+ +    G   YI+KP      +  ++ ++
Sbjct: 71  CRRLKANPRTKDIPLIFMSALSETVDKVKGLSLGAVDYITKPFQHEEVLVRLRLHL 126


>gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
 gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e]
 gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL
           R2-561]
 gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL
           J2-003]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
 gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
          Length = 1338

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
               V++VEDN    +  R  +  + Y  ++  +G+E +E A    PD+II D+ + +  G
Sbjct: 1087 SHTVLVVEDNHELRQFIRTELAVT-YQVIEAADGVEGIEKASNQLPDLIISDLMMPKADG 1145

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            LE+ + ++ + +   IP+I ++A A    +    + G + Y++KP S    +  IK  + 
Sbjct: 1146 LELLRTLRNNPQTCHIPIIILSAKASFESKITGLETGGDDYLTKPFSPRELVLRIKNTLE 1205

Query: 122  E 122
             
Sbjct: 1206 R 1206


>gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-------DVIIMDIQL 56
           ++++VED EL  ++    +E  G+  +   +G  A+E  +  +P       D+II+D+ L
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             I+GL+I + ++       +P++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 80  PHINGLDICRLLRHQGN--PVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  +  
Sbjct: 138 RALLRR 143


>gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
 gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
          Length = 230

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+I ED+        DL+E  GY  LQ  NG EA  L   H+PD++++DI +  + G  
Sbjct: 2   KVLIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMHQPDLVLLDIMMPGMDGYA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ +E  ++PVI +TA + + D+    + G + YI KP      +  I   I  
Sbjct: 62  VCRKIRQLNE--QVPVIFITAKSEEIDQVLGLELGADDYIKKPFGTREVIARINAVIRR 118


>gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I ED+     L +  +E  G+  L+  NG  AL+LAR   PD+ I+DI + +++
Sbjct: 1   MNPLILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIMMPQLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T+ +++     +IP++ ++A +   D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFELTRALRK---FSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|255028239|ref|ZP_05300190.1| hypothetical protein LmonL_01479 [Listeria monocytogenes LO28]
          Length = 202

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|239833775|ref|ZP_04682103.1| two component response regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821838|gb|EEQ93407.1| two component response regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 314

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V+IV+D++    L  + ++  G       +G E  ++  +   D+II+D+ L   SG+
Sbjct: 81  AHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGI 140

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + I+  S    +P+I +TA A   D+    + G + Y++KP      +  I+  +  
Sbjct: 141 EICQDIRRHSR---VPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRR 197


>gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland
           1988]
 gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S]
 gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
 gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 221

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     +  ++++ SGY+     +G+ A+E+ R+   D+II+D+ L +I 
Sbjct: 1   MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S    +P+I +TA   + DE +  +   + YI+KP S+++ ++ ++  +
Sbjct: 61  GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 229

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 229

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|254425145|ref|ZP_05038863.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192634|gb|EDX87598.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 223

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++++D+   + L +D +E  GY  +   NG EAL +  +  PD+II D+ + E+ G 
Sbjct: 23  KKLLLIDDDPNLILLVKDYLEFRGYQVVTAGNGREALTMLPELSPDMIICDVMMPEMDGY 82

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +QI++D     IP++ ++A     D  +    G + Y+ KP      +  ++  + +
Sbjct: 83  AFVEQIRQDPSKSWIPILFLSAKGQSQDRVKGLTTGADVYMVKPFEPEELVAQVESSLKQ 142

Query: 123 A 123
           A
Sbjct: 143 A 143


>gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 235

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED    +      +   GY A     G EA EL  + + D++++D+ L  ISG
Sbjct: 1   MTRILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +++    EL+ +P+I VTA + + D     + G + Y++KP S    +  I   + 
Sbjct: 61  TTLCRRM---HELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|182678197|ref|YP_001832343.1| response regulator receiver protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634080|gb|ACB94854.1| response regulator receiver protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 123

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/122 (67%), Positives = 107/122 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IVEDNELNMKLF DL+E  GY  +QTRNG+EA++LAR HKPD+I+MDIQL E+S
Sbjct: 1   MQKKILIVEDNELNMKLFNDLLEAHGYKTVQTRNGVEAVQLARDHKPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+ +KED +L+ IPVIA+TAFAMKGDEE+IR+GGCEAY+SKPIS+  F+ET++ Y+
Sbjct: 61  GLQVTQWLKEDDDLRHIPVIAITAFAMKGDEEKIRQGGCEAYLSKPISVVKFLETVRNYL 120

Query: 121 GE 122
            E
Sbjct: 121 AE 122


>gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 204

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++++D     + F +L+   G+   + RNG E +ELAR+ +PD+++ DI + E++G
Sbjct: 1   MKRILVIDDEAKLRRQFAELLNLEGFAVSEARNGREGVELARRERPDLVMCDITMPEMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++ +     +P I +T +  + D       G + Y+ KP+  +  +  ++  + 
Sbjct: 61  HRVLEALRAEPATSHVPFIFLTGWGEREDVRTGMNLGADDYLVKPVEPADLIAAVQARLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 219

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D+   + L +D +E  GY      NG EALE+  +  PD+II D+ + E+ G 
Sbjct: 13  KHLLLVDDDPNLVLLVKDYLEFQGYEVTTAENGKEALEVLTKQIPDMIICDVMMPEMDGY 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++D+    +PV+ ++A     D  +    G + Y+ KP      +  ++  + +
Sbjct: 73  SLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLKQ 132

Query: 123 A 123
           A
Sbjct: 133 A 133


>gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC
           19977]
 gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D+    ++   ++   G+      +G +AL   R+ +PD++++D+ L  ++
Sbjct: 1   MRQRILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + ++ DS    +P++ +TA     D     + G + YI KP      +  I+  +
Sbjct: 61  GIDVCRVLRSDSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 229

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRKA 122


>gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R]
 gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 226

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+    ++   ++   G+  +   +G  A+E A + +PD+I++D+ L  ++
Sbjct: 1   MSQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I + I+++S    +P+I +TA     D     + G + Y++KP      +  I+  +
Sbjct: 61  GIDICRLIRQES---SVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905]
 gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905]
          Length = 220

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    +L +  + T  Y      +G+E ++       D+I++D+ +  ++
Sbjct: 1   MNYNILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQSFDLILLDVMMPNLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++  S    IP+I +TA   + D+ +    G + YI+KP S  + +  ++  +
Sbjct: 61  GFEVAKMLRNQS---NIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 215

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+        D +E SGY  +   NG EALEL  +HKP +I+ DI + E+ 
Sbjct: 1   MPLTILVVDDDFGTRLSISDYLEISGYTVISAENGQEALELVDKHKPHLIVTDITMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K+I+     + +PVI +TA        R  + GC+ Y+ KP  L      I+  +
Sbjct: 61  GYDLVKRIRSRPAFRLLPVIFLTAHTAIQSRIRGYQLGCDNYLPKPFELDELGVVIRALL 120

Query: 121 GEA 123
             +
Sbjct: 121 ERS 123


>gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor]
          Length = 228

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 4   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 64  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 242

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          +++DI + ++ G E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       IP+I VTA        +  K G + Y++KP         I+  +  
Sbjct: 81  CKKIRS---FSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135


>gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +    +  ++  +G EA++L    K   +II+D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDKNIALIILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+++S+   +P+I +TA   + DE    + G + YISKP S  I +  ++  +  
Sbjct: 65  EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121


>gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
 gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
          Length = 247

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED +   +     ++  GY       G E L LA     DV+++D+ L  I+G+
Sbjct: 25  KKILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVMLPGINGI 84

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++I+  S+   +P+I +TA     D       G + YI KP ++   +  I+  +  
Sbjct: 85  EICRRIRTQSQ---VPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR 141

Query: 123 A 123
           A
Sbjct: 142 A 142


>gi|160884659|ref|ZP_02065662.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483]
 gi|156109694|gb|EDO11439.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483]
          Length = 1346

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++V+DNE      R  +E   Y      NG EA E+ ++  PD++I D+ + ++ G E+ 
Sbjct: 1100 LVVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEELPDLVISDVMMPQMDGNELC 1158

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + IK+D     IPVI +TA      +    + G + Y++KP +++I +  I+K I
Sbjct: 1159 RLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLI 1213


>gi|186681390|ref|YP_001864586.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Nostoc punctiforme PCC 73102]
 gi|186463842|gb|ACC79643.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Nostoc punctiforme PCC 73102]
          Length = 409

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+  +      L+   GY  ++   G   + L  Q +PD+I++D+ +  + G E
Sbjct: 96  KVLVVDDHAASRMTAVALLGMEGYEVIEADRGSTVVGLVTQKQPDLILLDVMMPGMDGFE 155

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +K+D + + IPVI +TA   +    R  + G + +++KP         +K  + +
Sbjct: 156 VCQLLKQDEQTRLIPVIFITALNDRRSRIRGIEVGADDFLTKPFDRVELAARVKSLVRQ 214


>gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D ++  +L +      G+   +  +GMEA+E  + ++ D+IIMD+ + E+ G
Sbjct: 1   MYKLLVVDDEKMIRELIKKYATFEGHEVTEAEDGMEAIEKCKMNQFDLIIMDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++I++     + PV+ ++A   + D     + G + Y+ KP S    M  +   I 
Sbjct: 61  FSACREIRK---FTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAIIK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024]
 gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter calcoaceticus PHEA-2]
          Length = 228

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K VM+VED      L RD +E +G+      +G +A    +Q KP+++I+D+ +  + G
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
 gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
          Length = 1323

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 73/117 (62%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K V++VEDNE+N ++   L++ +G       NG EALE   Q + D+++MD+Q+  + G+
Sbjct: 992  KSVLLVEDNEVNQEVALGLLQDTGLRVTVANNGQEALEKIEQARFDLVLMDMQMPVMDGI 1051

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
              TK+I+ D   +++P++A+TA AM  D ER  + G   ++SKPI +  F   +K++
Sbjct: 1052 TATKRIRADKRWKDLPIVAMTANAMTVDIERCTQAGMNDHLSKPIDIDKFYSVLKQF 1108



 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +  K D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEIQHKKFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG--CEAYISKPISLSIFMETI 116
           E+  +++     ++     VTA+    + +   + G   +A I KP++ S  ++ I
Sbjct: 912 ELLTRVQSLGLREKTKCFLVTAYGRDINLDG--ENGKLVDALIVKPVNPSNLLDAI 965


>gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 228

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D    + +    ++  G+  +  + G EALE+ ++H+PD++++D  L E+SGL++ 
Sbjct: 6   LLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKHQPDLVVLDWMLPEMSGLDVC 65

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++++       + +I VTA   + D+    + G + YI+KP SL      I+  +  
Sbjct: 66  RELRRMG---SVGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRR 119


>gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 230

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +M+VED     +L RD +E +G+      +G +A    +Q KP ++I+D+ +  + G
Sbjct: 4   MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPRMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + YI KP S    +  ++  + 
Sbjct: 64  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|332828802|gb|EGK01494.1| hypothetical protein HMPREF9455_02327 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1473

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VED+    +   +++E   Y  L   +G E  + A  + PD I+ DI + E+ G E
Sbjct: 1215 TILVVEDDSDLRRFIVNILEPY-YNVLDAADGKEGYDKAVANVPDFIVSDIMMPEMDGTE 1273

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+  +E+  IPVI +TA      +      G + YI+KP S+      I+  I +
Sbjct: 1274 LLQKIRSTTEISHIPVILLTAKTDMESKLDSLDYGADDYITKPFSVKYLRARIENIIRQ 1332


>gi|330951694|gb|EGH51954.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae Cit 7]
          Length = 645

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634


>gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 230

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED E        L+   G+  +   +G  AL    +H  D++++D+ L  +SG
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDVDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRA---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 229

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRKA 122


>gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    +L +  + T  Y      +G+E ++       D+I++D+ +  ++
Sbjct: 1   MNYNILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVMMPNLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++  S    IP+I +TA   + D+ +    G + YI+KP S  + +  ++  +
Sbjct: 61  GFEVAKMLRNHS---NIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 1131

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +DN    +    L+ +  Y      NG  ALE+A +  PD+++ D+ + E+ G E+ 
Sbjct: 653 LLADDNRDMREYIERLLGSR-YRIRAASNGKRALEMATEDPPDLVLTDVMMPEMDGFELL 711

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             ++ +S    IP+I ++A A +  +    + G + Y+ KP S    +  ++  + 
Sbjct: 712 AALRANSATSTIPIIVLSARAGEEAQIEGLQHGADDYLVKPFSARELVARVENNLR 767


>gi|116621165|ref|YP_823321.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116224327|gb|ABJ83036.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 2384

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
            KKV++V+D+  N+     ++E      +   NG   +E L +    D ++MDI + E+ G
Sbjct: 2252 KKVLVVDDDVRNIFALTSVLEQHHLQVVHAENGRAGIETLLKTPDVDGVLMDIMMPEMDG 2311

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+ I++ +E + +P+IAVTA AMKGD  +  + G   YI+KP+ L      ++ ++ 
Sbjct: 2312 YETTRAIRQIAEFRTLPIIAVTAKAMKGDRAKCIEAGASDYITKPVDLDQLFSVLRVWLI 2371

Query: 122  EA 123
             +
Sbjct: 2372 RS 2373



 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+    ++  D+    G  AL    G  AL LAR+  P  I +DI L ++ G  I 
Sbjct: 1987 LIIEDDVTFARILMDMAHDRGIRALVALRGGTALSLAREFNPGAITLDINLPDMVGWTIL 2046

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKYIGE 122
             ++K D   + IPV  +T      +  R    G  +Y+ K ++        +TI + +  
Sbjct: 2047 DRLKHDPATRHIPVHVITG---DENRRRGLGLGAVSYLEKSVTKETLNSAFDTIHRSLER 2103


>gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 229

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRKA 122


>gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL+    ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +M+V+D+    +L    +   G+  ++  +G EAL+        ++I+DI +  + G
Sbjct: 1   MTTIMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQLVILDIMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++E  +    P++ +TA      + +  + G + Y+ KP      +  +K  + 
Sbjct: 61  WELCRKLREHYDF---PLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|156742258|ref|YP_001432387.1| response regulator receiver protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233586|gb|ABU58369.1| response regulator receiver protein [Roseiflexus castenholzii DSM
           13941]
          Length = 263

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +M+V+D+     L    + + GY  +  R+G++AL+     +PD++++D+ +  +S
Sbjct: 4   MSATIMVVDDDPAISTLISHQLRSLGYRTVCLRDGLQALQQMAIIQPDLVLLDVMMPHMS 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I +QI+  SE    P+I +TA     D       G + Y++KP  ++     I+  +
Sbjct: 64  GWDICRQIRACSEA---PIILLTAKDADADVINGLNAGADDYVTKPYRIAQLHARIEAAL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL+    ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes str. Scott A]
          Length = 225

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++  +   +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCKKMR--TSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|110639416|ref|YP_679625.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282097|gb|ABG60283.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
          Length = 228

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 67/124 (54%), Gaps = 3/124 (2%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   +++IV+D +  ++L    +   GY      NG++A+E A+   P +I+MDI + +
Sbjct: 1   MKANSRILIVDDEQDIIELLEYNLTKEGYDVRTANNGLKAIEEAKDFLPQLILMDIMMPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G+E  ++I+E  +L+E  +I +TA + +  E    + G + +I+KPI     +  +  
Sbjct: 61  MDGVESCRKIREIPKLKESYIIFLTARSEEFSEIAAFEAGADDFITKPIKPRALISRVSA 120

Query: 119 YIGE 122
           +   
Sbjct: 121 FFRR 124


>gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 229

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|219849342|ref|YP_002463775.1| response regulator receiver modulated serine phosphatase
           [Chloroflexus aggregans DSM 9485]
 gi|219543601|gb|ACL25339.1| response regulator receiver modulated serine phosphatase
           [Chloroflexus aggregans DSM 9485]
          Length = 385

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I++D+E N  L    +E  G+      +G + LE A++   DVI++D+ + E+ G  
Sbjct: 8   RILIIDDSEHNRYLLTRQLERRGHSIATASHGRQGLEYAQREPFDVILLDLMMPEMDGFT 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q+K + +   IPVI ++A     D  R  + G E Y++KP + ++    I   +  
Sbjct: 68  VLDQLKRNPQTHHIPVIVISAINEIDDVVRCIEAGAEDYLTKPFNQTLLYAKINACLER 126


>gi|332667187|ref|YP_004449975.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
 gi|332336001|gb|AEE53102.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1381

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN       R  +    Y  ++  NG E LE  R+  PD+II D+ + E+ G E+
Sbjct: 1122 VLVVEDNADIRTYIRRSLYPD-YEVIEAENGQEGLEKTRKLIPDIIISDVIMPELDGFEL 1180

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K++     IPVI ++A + +  +      G + YI+KP S+ +    I+  +
Sbjct: 1181 CRTVKQEEATAHIPVILLSARSSQMYQVEGYDTGADDYIAKPFSIDLLQARIRNLL 1236


>gi|325273498|ref|ZP_08139736.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp.
           TJI-51]
 gi|324101374|gb|EGB98982.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp.
           TJI-51]
          Length = 644

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 69/118 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++VEDN +N  +   ++ + G       +G+EA++L  + +   ++MD +L  + G 
Sbjct: 516 KKVLLVEDNPVNQSVIEAMLRSLGLAVCTAADGLEAVDLVGRQRFAAVLMDCRLPHMDGY 575

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++      +P+IA+TA A+ GD ER    G + Y+SKP+  S     +++++
Sbjct: 576 EATRRIRQLDNGTGLPIIALTANALDGDRERCMTAGMDDYLSKPLRRSELQRVLQRWL 633


>gi|290477255|ref|YP_003470172.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus bovienii
           SS-2004]
 gi|289176605|emb|CBJ83414.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus bovienii
           SS-2004]
          Length = 230

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL+       D++++DI +   +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFTVVLAHDGEQALQYIDS-SIDLLLLDIMMPRKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K++++D    + PVI +TA     D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IETLKELRQD---HQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
 gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
          Length = 228

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 1   MSQVPRIAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E + +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 61  VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120

Query: 119 YIGEA 123
            +  A
Sbjct: 121 MLRRA 125


>gi|71907525|ref|YP_285112.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847146|gb|AAZ46642.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 865

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 71/121 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++ ED  +N ++ + L+E  G       +G EA+E A   + D+I+MD+Q+  + GL
Sbjct: 743 KRILLAEDEPINQEIAQVLLEEVGLTVDFAADGQEAVEKATAGRYDLILMDMQMPHLDGL 802

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  +QI+   E    P++A+TA A   D+ R    G + +I+KP+S  +F +T+ +++  
Sbjct: 803 EAARQIRLIPEYAATPILAMTANAFAEDKARCFMAGMDDFIAKPVSPDVFYQTLLRWLDN 862

Query: 123 A 123
           +
Sbjct: 863 S 863


>gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED     +L RD +E SG+ +    NG E L LA+ ++  +I++D+ L  I G
Sbjct: 1   MKRILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++E     +IP++ VTA     D+ R    G + YI KP + +  +  +K +  
Sbjct: 61  FQLCREMRE---FLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|296112407|ref|YP_003626345.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295920101|gb|ADG60452.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326560837|gb|EGE11203.1| two-component system response regulator [Moraxella catarrhalis
           46P47B1]
 gi|326561915|gb|EGE12250.1| two-component system response regulator [Moraxella catarrhalis
           7169]
 gi|326563058|gb|EGE13332.1| two-component system response regulator [Moraxella catarrhalis
           103P14B1]
 gi|326569554|gb|EGE19608.1| two-component system response regulator [Moraxella catarrhalis BC8]
 gi|326570341|gb|EGE20385.1| two-component system response regulator [Moraxella catarrhalis BC1]
 gi|326572378|gb|EGE22371.1| two-component system response regulator [Moraxella catarrhalis BC7]
 gi|326573651|gb|EGE23610.1| two-component system response regulator [Moraxella catarrhalis
           CO72]
 gi|326577274|gb|EGE27162.1| two-component system response regulator [Moraxella catarrhalis
           101P30B1]
 gi|326578036|gb|EGE27900.1| two-component system response regulator [Moraxella catarrhalis
           O35E]
          Length = 240

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 64/126 (50%), Gaps = 4/126 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQE 58
           M K+++++ED+    +L  D +  + Y       G   L++    + D  +I++D+ L +
Sbjct: 1   MNKQILLIEDDPDLAELISDYLSMNYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPD 60

Query: 59  ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G+E+ ++++  +++ + ++P++ +TA     D     + G + YI+KP      +  I
Sbjct: 61  MDGMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120

Query: 117 KKYIGE 122
           +  +  
Sbjct: 121 RAVLRR 126


>gi|262370815|ref|ZP_06064139.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
 gi|262314177|gb|EEY95220.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
          Length = 236

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63
           ++IV+D     ++    ++ +G+  LQ  +  +A ++    +P +I++D  +   +SG++
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGGVSGVD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K D  L EIPVI +TA   +  + +    G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125


>gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
 gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
          Length = 233

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G EAL    Q+ P++I++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFEQYNPNLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++       +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREVRAK---ANVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRR 121


>gi|83647950|ref|YP_436385.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635993|gb|ABC31960.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 758

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  L R ++E  G       NG  A++       D+I MD  +  + G E
Sbjct: 634 RVLLVEDNTVNRNLARKMLEKCGCRVDFAENGEIAIQQMGSTHFDLIFMDCWMPVMDGYE 693

Query: 64  ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK----K 118
            T++I+E  +    IP++A+TA A  G++E+  + G + +++KPI        ++    K
Sbjct: 694 TTRRIRESGQSFSHIPIVALTANAFPGEKEKCMQCGMDDFLTKPIRFEELSAIVRHFEEK 753

Query: 119 YIGEA 123
            + +A
Sbjct: 754 VLEQA 758



 Score = 53.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 14/126 (11%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57
           ++++ + NEL++K   D+            +   E   L  Q        + +I+D  L 
Sbjct: 482 RILVADANELSLKATLDIFSEESLLHCDIAKTAEEVKALVNQAVDSKAPYNAMILDESLP 541

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
               +++ K IK     +  P++ +++   +     ++  G   Y+SK       ++  +
Sbjct: 542 GDEFIDLIKFIKSLDLQKNAPILTLSSHPQREHVSELKGAGVSGYLSK-------LDR-E 593

Query: 118 KYIGEA 123
            ++ +A
Sbjct: 594 SHLRDA 599


>gi|70731594|ref|YP_261335.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345893|gb|AAY93499.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 773

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 59/112 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  + + ++   G       +G EAL     H+ D+++MD  +  + G E 
Sbjct: 652 ILLVEDNPVNQLVAKGMLSKLGCAVTVAAHGAEALNQLELHRFDLVLMDCNMPVMDGYEA 711

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           ++QI+      ++P+IA+TA AM  + ER R  G   Y++KP      +  +
Sbjct: 712 SRQIRRSGRWPDLPIIALTANAMPEERERCRAAGMSDYLAKPFRREELIALL 763


>gi|66045261|ref|YP_235102.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255968|gb|AAY37064.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
          Length = 645

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 69/118 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  AR     +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVMKARAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634


>gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC
           10712]
          Length = 225

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|291534209|emb|CBL07322.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K+  VED+E   +L    +++SG+ A    N  E   + + + PD+I++DI L  I G
Sbjct: 1   MQKIYCVEDDESVRELVIYALQSSGFEAQGFVNAEEFFPVLKNNVPDLILLDIMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EI K+++++ + Q  P+I +TA   + D+      G + Y++KP  +   +  IK  + 
Sbjct: 61  IEILKEVRKNPKTQHTPIIMLTARGSEYDKITGLDNGADDYVTKPFGVMELIARIKAVLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|166031344|ref|ZP_02234173.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
 gi|166028749|gb|EDR47506.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D++  ++     +   G+  L+  +G+EA+E+ ++   D++IMDI +  + G
Sbjct: 1   MAKILVCDDDKEIVEAIEIYLTQDGHQVLEAYDGIEAVEILKKESVDLLIMDIMMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E      IP+I ++A +   D+      G + YI+KP +    +  +K ++ 
Sbjct: 61  IRATLKIREK---HNIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 232

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   K++IV+D +    L    +   GYI L++ NG+EALEL + +   +II+DI + ++
Sbjct: 1   MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNVHLIILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E   +I+E+   + +P+I ++A +   D+      G + YI+KP +    +  +K  
Sbjct: 61  DGIEACMKIREE---KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51]
 gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED     +     +E +GY   +  +G +AL L  +  PD++++D+ L  I GLE
Sbjct: 7   KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+E   + +  +I +TA     D+    + G + Y+ KP +    +  IK  +  
Sbjct: 67  VCQHIRE--TMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRR 123


>gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 233

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + ++++VED+    +L     +   +    T +G EAL LA++  PD++++D  ++ +
Sbjct: 1   MARARMLLVEDDAALAELLIWHFKREDFEVSHTVDGEEALLLAQETVPDIVLLDWMVESL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ ++++  +    +P+I +TA   + D  R  + G + Y++KP S    +  +   
Sbjct: 61  SGIEVCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E   +L +D +E SG+      +G   L  A     D++I+D+ L  + G
Sbjct: 1   MSRILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHEDFDLLILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++++E   ++  P+I V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICRKVRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229120236|ref|ZP_04249487.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663277|gb|EEL18866.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 223

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|152986976|ref|YP_001347701.1| sensor histidine kinase/response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150962134|gb|ABR84159.1| sensor histidine kinase/response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 779

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 63/116 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + + L+   G       +G+ AL+L  +   D+++MD  +  + G E
Sbjct: 650 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKLLEEQPIDMVLMDCNMPVMDGYE 709

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+QI++      +P+IA+TA A+  + ER R  G + Y++KP         + ++
Sbjct: 710 ATRQIRDSGRWGRLPIIALTANALPEERERCRAAGMDDYLAKPFHRDELKAILDRW 765


>gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 228

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+       R  +   GY      +G EAL       PD++++DI + ++ 
Sbjct: 1   MSLRVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+   E    P++ +TA     D  +    G + Y+ KP +L   +  ++   
Sbjct: 61  GLEVCRRIRAAGET--FPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALS 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|302526266|ref|ZP_07278608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302435161|gb|EFL06977.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 266

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+       R  +   G+       G E L    +   DV+++D+ L  + G
Sbjct: 37  MPRVLLIEDDRAVRDGLRLALTYQGHTVDAVETGEEGLARLAEDPADVVVLDLMLPGMDG 96

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA     D     + G + Y+ KP    +    I+  + 
Sbjct: 97  FEVCRRIRAAG---DLPIIMLTARNDDIDVVAGLEAGADDYVVKPAQARVLEARIRAVLR 153

Query: 122 E 122
            
Sbjct: 154 R 154


>gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1010

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+IV+DN       + L+E   Y      NG  ALE    H+P++II D+ + E+ G+
Sbjct: 628 ARVLIVDDNADMRDYLQRLLEKQYY-IETAANGKLALEKIATHQPELIISDVMMPEMDGI 686

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+   +K +   + +PVI V+A A +         G + Y++KP S       ++  I 
Sbjct: 687 ELLHHVKHNPATESLPVILVSARAGEEATIEGYDIGADDYLTKPFSAKELQARVRAQIR 745


>gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
 gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
          Length = 258

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 69/120 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED E  + L    + + G+  +  + GMEAL +AR+  PD+I++D+ + E SGL
Sbjct: 32  KKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGL 91

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K +K+D +   IP++ +TA +   D     + G + YI+KP S    +  I+  +  
Sbjct: 92  DVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRR 151


>gi|153870385|ref|ZP_01999797.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152073147|gb|EDN70201.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 855

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
           K++IV+D  +N+ +  + +  + Y  +Q  +G EAL +  +   PD+I++D+ +  ++G 
Sbjct: 562 KILIVDDEAVNLHVLANHLSLNHYATIQAASGREALSILEEGLIPDLILLDVMMPHMTGY 621

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+T++I+E  E  E+P++ +TA     D     + G   Y+ KPIS +  +  IK ++
Sbjct: 622 EVTQKIREHWEANELPIVLLTAKNQVSDLVMGLEVGANDYLIKPISKNELLARIKTHL 679


>gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 2   LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +KK   V+IVED     +L    +  +G+  +   +G+ A        PDVI++D  L  
Sbjct: 1   MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDAVLPDVILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SGL + ++ + DS  + +P++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  ASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 227

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IVED     +     +   GY   Q  +G E ++ A+    D+II+DI L  I+G+
Sbjct: 4   KKILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIMLPHINGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++I++      IP+I +TA     D+      G   Y++KP ++   +  I+  +
Sbjct: 64  EVLRKIRQ---TSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAAL 118


>gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 234

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +   ++ +  +   GY       G + L    + + D++++D+ L E++G
Sbjct: 1   MSKILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKFHEDEYDLVLLDVMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+I++ +E   +PV+ +TA +   D+      G   YI+KP      +  I+  + 
Sbjct: 61  LEVLKRIRKHNET--VPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALR 118


>gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+      +G EALE+  +   D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +++ S+   +PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRSLRQRSK---VPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++++ G+       G  A+E  R  +PD+I++D+ L    
Sbjct: 1   MNARILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+E+S    +P++ +TA +   D  +  + G + Y+ KP      +  ++  +
Sbjct: 61  GLEVCREIREESG---VPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|270339712|ref|ZP_06005766.2| two component system sensor histidine kinase [Prevotella bergensis
            DSM 17361]
 gi|270334042|gb|EFA44828.1| two component system sensor histidine kinase [Prevotella bergensis
            DSM 17361]
          Length = 1372

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
               ++IVEDN    +   D +    Y  ++  NG EA+E        +++ D+ + E+ G
Sbjct: 1122 SATLLIVEDNTDIRRYLVDALCDQ-YHVVEASNGKEAMEKLDAETISLVLTDVMMPEMDG 1180

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E+ K+IK   +   IPVI ++A     ++      G + YI+KP S+SI    I+  + 
Sbjct: 1181 FELCKRIKRHIQTCHIPVIILSAKVETREQLDGLLIGADDYITKPFSISILKAKIRNTLR 1240


>gi|254418732|ref|ZP_05032456.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196184909|gb|EDX79885.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 240

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++V+D+     L    ++ +G    +  +G  AL     ++P+++++DI +  + 
Sbjct: 4   MQSTVLVVDDDPHIRDLLTFALQKAGLATREAADGEAALADIALYRPNLVVLDINMPRMD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  ++I+      ++PV+ +++   + D     + G + Y++KP S    +  +   +
Sbjct: 64  GIEACRRIRAQG---DLPVLFLSSRDDEIDRILGMELGADDYVTKPFSPREVVARVAAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|217978047|ref|YP_002362194.1| adenylate/guanylate cyclase [Methylocella silvestris BL2]
 gi|217503423|gb|ACK50832.1| adenylate/guanylate cyclase [Methylocella silvestris BL2]
          Length = 403

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 64/118 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D   N+++    +E  GY  +   +G E L  AR  KPD+I++DI + ++ G+ 
Sbjct: 22  RILAVDDVAENLEIVVVRLEAHGYEIITASDGEEGLAKARAIKPDLILLDIMMPKLDGIS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + K++K D  L  IPVI +TA A + D       G + Y++KP   S  +  ++  + 
Sbjct: 82  VLKELKRDENLGFIPVILLTAKADRTDLVAGLDAGADDYLTKPFDQSALVARVRSMLR 139


>gi|170078959|ref|YP_001735597.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886628|gb|ACB00342.1| Two-component response regulator; GGDEF domain protein
           [Synechococcus sp. PCC 7002]
          Length = 602

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              ++++ED +   +L   L+    Y  L+  NG   + +A +++PD+II DI +  + G
Sbjct: 7   SPTILVIEDEDSIRELIVTLLIAEDYQVLEAENGQIGVGIAIENRPDLIICDIMMPGMDG 66

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++ D E + IP I +TA   K +  +    G + Y++KP +    ++ IK  + 
Sbjct: 67  YGVLEILQADPETETIPFIFLTAKGTKENIRQGMNLGADDYLTKPFTTYELLDAIKTRLR 126

Query: 122 E 122
           +
Sbjct: 127 K 127


>gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++   +L +       +  + TR+G EAL LAR++ PD++++D  ++  SG+E
Sbjct: 5   RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   E   +P+I +TA   + D  R  + G + Y++KP S    +  +   +  
Sbjct: 65  VCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123


>gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 260

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 36  MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 95

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 96  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARL 152

Query: 121 GEA 123
             +
Sbjct: 153 RRS 155


>gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
 gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
          Length = 233

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED++   ++ +D +  +G+   +  +G   L +ARQ + D+I++DI L  + G
Sbjct: 1   MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++     +E+PV+ VTA   + D  R    G + YI KP + +  +  ++ +I 
Sbjct: 61  FAVCRELR---RYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|220909116|ref|YP_002484427.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219865727|gb|ACL46066.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 121

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED+    ++  +L+  SG       +G+EA+E     +PD++++DI +  ++G
Sbjct: 1   MSKVLVVEDSVPQREMISELLSNSGLTVAVATDGVEAIEQLHIIQPDIVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QIK D +   +PV+  ++ +   D    +K G +AYI+KP      + T+K+ + 
Sbjct: 61  YEVCRQIKSDPKTSHVPVVICSSKSEDFDRYWGKKQGADAYIAKPFQPKELIGTVKQLLR 120


>gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + 
Sbjct: 1   MIPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 225

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 58/121 (47%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+++ED +    L    +E  GY  L   +G   L  AR+ KPD+I++D+ L  + G
Sbjct: 1   MPTVLVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLMLPGMMG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +K       IPVI +TA   + D     + G + Y+ KP S    M  ++  + 
Sbjct: 61  TEVCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|158320115|ref|YP_001512622.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Alkaliphilus oremlandii OhILAs]
 gi|158140314|gb|ABW18626.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Alkaliphilus oremlandii OhILAs]
          Length = 451

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I++D +      +  +E  GY   +  NG + LE   +  PD+I++D+++  + 
Sbjct: 1   MNKRILIIDDEKNMRWAIKKALEKEGYNIYEAENGQDGLEKLEEIYPDLILLDLRMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  ++IKE +  Q+IPVI +TA           K G   YISKP  +      IKK +
Sbjct: 61  GMEALQRIKEIN--QDIPVIMLTAHGTMESAVEAMKLGALDYISKPFDIEELKVLIKKAL 118


>gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 227

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 63/118 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED +   +L    ++  GY  + + +G E LE A + +PD+I++D+ L  + G ++
Sbjct: 4   ILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANRLQPDLILLDLMLPGMLGTDV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K I++  +   IPV+ +TA   + D+    + G + Y+ KP S    M  IK  +  
Sbjct: 64  CKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRR 121


>gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
          Length = 1771

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 76/120 (63%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1424 KRVLLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLSQQSYDLVLMDCQMPVMDGY 1483

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T  I++  EL  +PVIA+TA AM GD+E   + G   +I+KPI ++I  +T+ KY+G+
Sbjct: 1484 QATMAIRQRPELAHLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNILYQTLLKYLGD 1543



 Score =  120 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + R  +E+ G+     R G EA+    QH+  V ++D ++  + GLE 
Sbjct: 1284 VLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCIQHEYAVALIDWKMPSMDGLEA 1343

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +QI++ ++     ++ V+A A      +I + G   YISKPIS S  ++ I   +G A
Sbjct: 1344 ARQIQQQAKAAP-RILMVSAHANHEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRA 1401


>gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++ ++D E  + + +  +E  GY  L   NG  AL   +   PD++I+D+ L  +SG E
Sbjct: 2   KILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTFKTVNPDLVILDLMLPGMSGEE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+    L ++P++ +TA   + D+      G + Y++KP S       +K  +  
Sbjct: 62  ICRKIRA---LSKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRR 117


>gi|320355079|ref|YP_004196418.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123581|gb|ADW19127.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
          Length = 326

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 1   MLKK-------VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIM 52
           M KK       ++IV+DN + +KL   ++  +GY  +Q  +G +AL L      PD+I++
Sbjct: 4   MKKKEKTTDASILIVDDNPVVIKLLHAMLARAGYQVVQAASGQQALALLASDCLPDLILL 63

Query: 53  DIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           DI +  +SGLE  + IKE+    +IPVI VTA   K         G + YI KP +    
Sbjct: 64  DIDMPGVSGLEACRLIKENPRTADIPVIFVTASNDKEHIVNGFAAGAQDYIIKPSTQEEL 123

Query: 113 METIKKYI 120
           +  ++ ++
Sbjct: 124 LARVRTHL 131


>gi|312127220|ref|YP_003992094.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777239|gb|ADQ06725.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 234

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M    V +V+D +  ++L  + +   GY      NG   LE   + +PD++I+DI L +I
Sbjct: 1   MSAYTVYVVDDEKDILELVSEYLTQKGYAVKTFENGEGFLEEFEKSEPDIVILDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G EI K+I+++S   ++P+I ++A   + D+    + G + YISKP SLS     IKK 
Sbjct: 61  DGYEICKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|284053870|ref|ZP_06384080.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira platensis str. Paraca]
          Length = 286

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 60/117 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVEDN  N+ L  D I   G       NG+EA+  A   +PD+I++DI + ++ G E
Sbjct: 8   TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEAIQPDLILLDIVMPKMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K++     IPVI +TA     D+ +    G   YI+KP      +  +  ++
Sbjct: 68  TCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHL 124


>gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++   +L +       +  + TR+G EAL LAR++ PD++++D  ++  SG+E
Sbjct: 5   RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   E   +P+I +TA   + D  R  + G + Y++KP S    +  +   +  
Sbjct: 65  VCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123


>gi|281422568|ref|ZP_06253567.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella copri DSM 18205]
 gi|281403392|gb|EFB34072.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella copri DSM 18205]
          Length = 935

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++++DN    +  R L++   YI L+  +G E L +A +  PD++I D+ +  + GLE
Sbjct: 685 TVLVIDDNTDIRQYERTLLQDE-YIVLEAADGKEGLAVALKEVPDLVICDVMMPVMDGLE 743

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +T+Q+K ++    IPVI +TA  ++       + G ++YI+KP    + +  I+  + +
Sbjct: 744 LTEQLKTNTATSHIPVIMLTAKNLEEHRAEGYEHGADSYITKPFHSKVLLARIENLLRQ 802


>gi|218508381|ref|ZP_03506259.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Brasil 5]
          Length = 228

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D      +    +E +G      R+G EA+   R+   D+II+DI + ++ 
Sbjct: 1   MAPRILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIGMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI++      +P++ ++A   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|218246672|ref|YP_002372043.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 8801]
 gi|218167150|gb|ACK65887.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 8801]
          Length = 379

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+     L +  +  SGY  +   NG + L  A++  PD+II D  +  ++G
Sbjct: 1   MAQILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKAQELCPDLIICDWVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+  Q+K   EL     I +T+     D  +    G + ++ KPI ++  +  ++  + 
Sbjct: 61  LEVCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSGLR 120


>gi|254974102|ref|ZP_05270574.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091501|ref|ZP_05320979.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313229|ref|ZP_05354812.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515919|ref|ZP_05383595.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649013|ref|ZP_05395915.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682204|ref|YP_003213489.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685803|ref|YP_003216936.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519129|ref|ZP_07405476.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260208367|emb|CBA60866.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211819|emb|CBE02210.1| two-component response regulator [Clostridium difficile R20291]
          Length = 224

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D E  + L +D  E +GY     ++G ++L+   ++ PD+I++DI + EI 
Sbjct: 1   MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDSLKKISKN-PDIILLDINMPEID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+   +    P++ +TA     D+    + G + YI KP  L      +  ++
Sbjct: 60  GIEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 210

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 60/118 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++++D+   + L +D +E  GY  +   NG+E LE  R   PD+II D+ + E+ G 
Sbjct: 5   KRLLLIDDDPNLILLVKDYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + I+ +S    IPVI ++A     D  R    G + Y+ KP      +  ++  +
Sbjct: 65  TFVQTIRSNSATDWIPVIFLSARGQTADRVRGLNTGADVYLVKPFEPEELVAQVESVL 122


>gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 1149

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV++V+D+  N+      +E  G I    RNG EA+E   QH   D+++MD+ + E+ G
Sbjct: 1025 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1084

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+ I++    +++P+IAVTA AMK D++R  + G   Y++KPI L      I+ ++ 
Sbjct: 1085 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1144

Query: 122  E 122
            +
Sbjct: 1145 Q 1145



 Score =  100 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L  +   E  ELA Q+ PD I++D++L + SGL +
Sbjct: 759 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFELAAQYIPDAILLDMRLPDHSGLTV 818

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D        G   Y  KP S     E   + 
Sbjct: 819 LQRLKEQAGTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 870



 Score = 74.0 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED++L  +    LI              +AL L R++  D +I+D++L ++ G 
Sbjct: 879 KHILLVEDDDLQRESIARLIGDDDVEITAVAFAQDALALLRENIYDCMIIDLKLPDMLGN 938

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   +  +EE 
Sbjct: 939 ELLKRMTAEDIRSFPPVIVYTGRNLTREEEA 969


>gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
 gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
          Length = 238

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++VED+E    L R  ++  GY  +   +G +AL        D +I+D+ L  + 
Sbjct: 1   MAKTILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQVWDAVILDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI ++I++    + +PVI ++A   +       + G + Y++KP SL   +  +K   
Sbjct: 61  GLEICRRIRQM--TRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALF 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 226

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+    ++   ++   G+  +   +G  A+E A + +PD+I++D+ L  ++
Sbjct: 1   MSQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I + I+++S    +P+I +TA     D     + G + Y++KP      +  I+  +
Sbjct: 61  GIDICRLIRQES---SVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV+D      L    ++ +GY      +G    E  +  +PD+I++D+ L ++ G+
Sbjct: 4   KKILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLMLPKMDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++  +    +P++ +TA     D+      G + Y++KP S    +  I+     
Sbjct: 64  QVCRELRRQNNA--VPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRR 121


>gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB056]
 gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB058]
 gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB059]
 gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii AYE]
 gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 228

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +M+VED      L RD +E +G+      +G +A    +Q KP+++I+D+ +  + G
Sbjct: 1   MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTNFQQRKPNLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|323343003|ref|ZP_08083234.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463067|gb|EFY08262.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 252

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I +D    +   +  +    YI  +  NG+EALE+  Q   D++++D+ +  + G
Sbjct: 17  MAKILICDDERDIVNALKIYLSQEDYIIYEAFNGVEALEILVQEHIDLVLLDVMMPVMDG 76

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE    I++      IP+I +TA     D+      G + YI+KP +    +  +K  + 
Sbjct: 77  LEAMMHIRK---TTTIPIILLTAKGEDTDKILGLNVGADDYITKPFNPMEVIARVKSQLR 133

Query: 122 E 122
            
Sbjct: 134 R 134


>gi|163797104|ref|ZP_02191059.1| Response regulator [alpha proteobacterium BAL199]
 gi|159177620|gb|EDP62173.1| Response regulator [alpha proteobacterium BAL199]
          Length = 246

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 64/113 (56%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED    + L R  +E  G+      +G EAL +A + KPD+I++D  L  +S
Sbjct: 15  MKPLILIVEDEAPIVTLLRYNLEREGFRVADAGDGEEALLVAAERKPDLILLDWMLPLLS 74

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
           G+E+ ++++   + + +P+I +TA   +GD  R    G + Y++KP S S  +
Sbjct: 75  GIEVCRRLRRVPDTKNVPIIMLTARGEEGDRIRGLNSGADDYVTKPFSPSELI 127


>gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1155

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV++V+D+  N+      +E  G I    RNG EA+E   QH   D+++MD+ + E+ G
Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+ I++    +++P+IAVTA AMK D++R  + G   Y++KPI L      I+ ++ 
Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1150

Query: 122  E 122
            +
Sbjct: 1151 Q 1151



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L  +   E   LA Q+ PD I++D++L + SGL +
Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFALAAQYIPDAILLDMRLPDHSGLTV 824

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D        G   Y  KP S     E   + 
Sbjct: 825 LQRLKELAATRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876



 Score = 58.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED++L  +    LI              +AL L R++  D +I+D++L ++ G 
Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVALAQDALALLRENIYDCMIIDLKLPDMLGN 944

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   +  +EE 
Sbjct: 945 ELLKRMTAEDIRSFPPVIVYTGRNLTREEEA 975


>gi|89902538|ref|YP_525009.1| response regulator receiver domain-containing protein [Rhodoferax
           ferrireducens T118]
 gi|89347275|gb|ABD71478.1| response regulator receiver domain protein [Rhodoferax
           ferrireducens T118]
          Length = 124

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 67/123 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++ +D    +     L++  GY  L  R+G EALE   + KPD++++D+ + + +
Sbjct: 1   MSQKILVADDEPNIVISLEYLLKREGYTVLIARDGQEALEAIAREKPDLVLLDVMMPKKT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + ++   +LQ I ++ +TA     D  +    G +AYI+KP S    +  + + +
Sbjct: 61  GFEVCQALRASDDLQAIKILMLTAKGRDTDVAKGLALGADAYITKPFSTRELVLKVAELL 120

Query: 121 GEA 123
            E+
Sbjct: 121 RES 123


>gi|330503204|ref|YP_004380073.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328917490|gb|AEB58321.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 227

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN   +    D ++  G+     ++G+  L LA     D+I++DI L  I G +
Sbjct: 2   RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED    E+P++ +TA     D  +    G + Y+ KP +LS  +  I+  +  +
Sbjct: 62  VCKRLREDGR-SEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120


>gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           KV++V+D     KL RD +   G++ ++  +G EA+++   Q    +I++D+ + ++ G 
Sbjct: 5   KVLVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I++     ++P+I +TA   + DE +    G + YISKP S  I +  ++  +  
Sbjct: 65  EVCRTIRK---YSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E   +    L++  G+      +G  AL+       D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQDIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++      +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRQ---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+++++D+    ++    + T G+      +G    +     + D+ ++D+ + +++
Sbjct: 1   MMHKILLIDDDIALTEMLEQYLVTEGFDVTVANDGQTGAQYVLAGQFDLTVLDVMMPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  + I++      IPVI +TA   + +     + G + Y++KP +    +  I+  +
Sbjct: 61  GIETLRIIRQ---ASHIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 222

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+        D +E SGY+ +   NG EALEL  +H+P +I+ DI + E+ 
Sbjct: 1   MPLTLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKHQPHLIVTDIAMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+++     + +PVI +TA     +  R  + GC+ Y+ KP  L      I+  +
Sbjct: 61  GFELVKRVRSQPIFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLL 120

Query: 121 GEA 123
             +
Sbjct: 121 ERS 123


>gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I ED +    L +  +E  GY      +G EAL +  + +PD+++ D  + ++SG+E+
Sbjct: 7   IIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEALMMINERQPDLLVCDWMMPKVSGIEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++++  +E + +P++ +TA + + D  R    G + Y+ KP S+   +  I+  +  
Sbjct: 67  TRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLRR 124


>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
 gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
          Length = 240

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    +   G+       G E L+ AR  +PD +I+D+ +  + G 
Sbjct: 13  ARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+++ D    + PV+ +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 73  GLLKRLRADGV--DAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 130

Query: 123 A 123
           A
Sbjct: 131 A 131


>gi|198274045|ref|ZP_03206577.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135]
 gi|198273123|gb|EDY97392.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135]
          Length = 1367

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN        D      Y      NG E L++A +  PD+++ DI +  ++G+ +
Sbjct: 1098 ILVVEDNADIRDYIADSFTDL-YEVKTAANGKEGLQIATECIPDIVVSDIMMPVMNGIMM 1156

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K D     IPVI +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1157 CQKLKADMRTSHIPVILLTAKDSITDKEEGYQAGADSYLTKPFSASLLQSRISNLL 1212


>gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D E  +   +D +E  GY  L   +G EAL +  + +P +II+D+ + E+ G+E
Sbjct: 7   TILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEAL-IQSKRQPSLIILDVMMPEMDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + KQ++E     + P++ ++A   + D  +    G + Y+ KP SL+     I  ++  
Sbjct: 66  VCKQLRE---TTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRR 121


>gi|104782259|ref|YP_608757.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
            L48]
 gi|95111246|emb|CAK15966.1| putative sensor histidine kinase/response regulator (hybrid)
            [Pseudomonas entomophila L48]
          Length = 1156

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G I    RNG EALE    +   D+++MD+ + E+ G
Sbjct: 1032 RKILLVDDDVRNIFALTSALEHKGAIVEIGRNGREALECLEANDDIDLVLMDVMMPEMDG 1091

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+ I++    +++P+IAVTA AMK D++R  + G   Y++KPI L      I+ ++ 
Sbjct: 1092 YEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1151

Query: 122  E 122
            +
Sbjct: 1152 Q 1152



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L  +   E  ELA Q+ PD I++D++L + SGL +
Sbjct: 766 ILVIEDEPNFARILYDLAHELGYSCLVAQAADEGFELAAQYMPDAILLDMRLPDHSGLTV 825

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D        G   Y  KP S         + 
Sbjct: 826 LQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKAVFARL 877



 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED++L       LI              +AL L R++  D +I+D++L ++ G 
Sbjct: 886 KHILLVEDDDLQRDSIARLIGDDDIEITAVAMAQDALALLRENIYDCMIIDLKLPDMLGN 945

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   +  +EE 
Sbjct: 946 ELLKRMTAEDIRSFPPVIVYTGRNLTREEEA 976


>gi|325298638|ref|YP_004258555.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324318191|gb|ADY36082.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1353

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN+  +    +      Y      NG E +E+A +  PD+I+ DI +  + G+ +
Sbjct: 1092 ILIVEDNKDILDYIAESFTDL-YEVKTALNGKEGMEIALECIPDIIVSDIMMPVMDGITL 1150

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             KQ+K D     IP+I +TA     D+E   + G ++Y++KP S S+    I   + +
Sbjct: 1151 CKQLKNDIRTSHIPIILLTAKDTLSDKEEGYQSGADSYLTKPFSASLLHSRINNLLAQ 1208


>gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 232

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED+   +KL    +    Y   +  +G   L +A ++  D+I++D+ L  + G
Sbjct: 1   MKQILIIEDDPEIIKLLEIHLTDLIYTTAKAMDGKVGLAMALENSYDLILLDLTLPTMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EI K+I+     +  P+I +TA + + D     + G + YI+KP S+   +  +K  + 
Sbjct: 61  IEICKKIRSQ---KNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D    +KL +  +E  GY  L  R+G+EALE   + + DV+++D+ +  + G+E
Sbjct: 5   TILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNREQIDVMVLDVMMPNMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I+E    +  P+I ++A     D+      G + Y++KP S    +  IK  +  
Sbjct: 65  ACMKIRE---TEHFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRR 120


>gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I+ED +   +  +   E  GY    T +G+  L+ A +   D++++DI L  I 
Sbjct: 1   MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I+E S   +IPVI +TA     D+      G + Y++KP S+      ++  +
Sbjct: 61  GFEVLKKIREHS---DIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAAL 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
 gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
          Length = 996

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
           ++++VEDN+ N ++ R+L+E  G I     +G EA++  +      D+++MD+Q+  + G
Sbjct: 635 RILVVEDNQNNQQIARELLEDEGAIVTLAAHGQEAIDRLKATPQGFDLVLMDLQMPVMDG 694

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  T+ I+    L  +P+IA+TA AM  D +     G   +I KP +L   ++TI+K++
Sbjct: 695 INATQYIRSHLTLHTLPIIAMTANAMVSDRQACLAAGMNDHIGKPFNLRELIQTIQKHL 753



 Score = 96.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
            V++V+DN     L + +  T G+       G +AL L  Q        DV+ +D  +  
Sbjct: 485 HVLMVDDNPTARSLLQQMALTLGWRVDCAAEGEQALTLIAQQQQAGDPYDVLFIDWLMPG 544

Query: 59  ISGLEITKQIKEDSELQEIP-VIAVTAFAMK-----GDEERIRKGGCEAYISKPISLSIF 112
           + G +  ++++     +++P ++ VTA   +       EE+      + ++ KP++  + 
Sbjct: 545 LDGWQTIQRLRSRLHEKQLPLLVMVTANDRECLLQRSSEEQGIL---DGFLLKPVTPLML 601

Query: 113 METIKKYIGE 122
           ++++   + E
Sbjct: 602 LDSVAGALRE 611


>gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
 gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
          Length = 228

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++VED+E   +L    +   G+   +  NG + L LA     D++++DI L +IS
Sbjct: 1   MQNRVLLVEDDEELRELLSRYLANQGFTVREAANGQDGLSLALGQHCDLVVLDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++  +    +PV+ +TA   + D     + G + YI KP +    +  ++  +
Sbjct: 61  GLEVLRQLRAKT---HLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
 gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
          Length = 228

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 2/125 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +VED E    L R  +E  GY       G EA    R+  PD++I+D  L  
Sbjct: 1   MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ +++++  E   +P+I +TA   + +  R    G + Y+ KP S    +  +K 
Sbjct: 61  VSGIELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120

Query: 119 YIGEA 123
            +  A
Sbjct: 121 MLRRA 125


>gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 238

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED+    +   D++E  GY  L  ++G EAL ++ +   D+ ++DI +   +G +
Sbjct: 5   RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGYD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       + +I +TA   + D+    + G + YI+KP  +      I   +  +
Sbjct: 65  VCRELRRRD--PALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRS 122


>gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides
           fragilis 3_1_12]
 gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 224

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           ++  G+      +G    EL RQ   D++I+DI +  ++G
Sbjct: 1   MAKILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQEVFDLLIIDIIMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +  +       +PVI +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 61  LELCRLYRRQYGYL-VPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKAILR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRKA 122


>gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 239

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 59/120 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+M+++D    ++L    +E  GY  +   +  +ALE  +    D+ ++DI L  I G 
Sbjct: 4   RKIMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEELKDKDVDMFLVDIMLPGIDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + I+   + +  PVI ++A   + D+    + G + YI+KP S+   +  IK     
Sbjct: 64  EFVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123


>gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 237

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +  +++    +E  GY      +G EALE A   K D+I++DI L  + G E+
Sbjct: 12  VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETA-SGKIDLIVLDIMLPGVDGYEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++++  E +EIP++ ++A   + D+      G + Y++KP+S  + +  +K  +  +
Sbjct: 71  CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRS 129


>gi|148825917|ref|YP_001290670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|319776338|ref|YP_004138826.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|329123490|ref|ZP_08252054.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
 gi|148716077|gb|ABQ98287.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|301170132|emb|CBW29736.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae 10810]
 gi|309973064|gb|ADO96265.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2846]
 gi|317450929|emb|CBY87155.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|327471072|gb|EGF16527.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
          Length = 231

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED     ++    +    Y  ++  +   A+   +++ P +I++D  L   S
Sbjct: 1   MTRKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  + IK+      IP+I +TA + + D       G + YI+KP S  I +  I+   
Sbjct: 60  GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 900

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ ED  +N  L R L+  +GY      NG +A++  R    D I+MDIQ+ E+ G 
Sbjct: 758 QRILVAEDEYINKILIRTLLRQAGYQVTVVENGRKAVDAWRGGLFDCILMDIQMPEMDGY 817

Query: 63  EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E   +I+E + + Q IP+IA+TA AM  D ++    G + Y+SKPI  S  ++ I+KY+
Sbjct: 818 EAVARIREAEGDNQHIPIIAMTAHAMPSDRQKCLSSGMDDYVSKPIDGSSVLKIIEKYL 876


>gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305]
 gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family
           [Planctomyces brasiliensis DSM 5305]
          Length = 228

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 59/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED    +      ++  G+  +   +G + L  A+   PD+I++D+ L    GLE+
Sbjct: 6   ILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQASLPDLIVLDLMLPVTDGLEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q++ D   + I ++ +TA + + DE      G + Y++KP  +   +  +K  +  
Sbjct: 66  CRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKALLRR 123


>gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
          Length = 219

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED +  ++     +    Y      +G + L+ A  H  D+II+D+ L  I+G
Sbjct: 1   MTQILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++    Q  P+I +TA +   D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 221

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++EDN    +L R+ +    Y       G E + L +++  D++++D+ L +I G
Sbjct: 1   MTHILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLYDLVLLDVMLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I K I+  S   ++P+I +T    + +E +  + G + YI+KP   +IF++ ++  + 
Sbjct: 61  YSICKIIRGQS---DVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L++A Q   ++II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 229

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|325270713|ref|ZP_08137308.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           multiformis DSM 16608]
 gi|324986959|gb|EGC18947.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           multiformis DSM 16608]
          Length = 954

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN         L     Y      NG E +E+A    PD+II D+ +  + GLE
Sbjct: 705 RLLVIEDNRDIAAYIGSLFADR-YDVSYASNGKEGMEMALDLMPDLIITDLMMPGMDGLE 763

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ +  +  IP+I VTA   + +  R  + G +AYI KP +       ++K +  
Sbjct: 764 VCRQVRGNEIINHIPIIVVTAKITEEERIRGLEAGADAYIVKPFNADELRTRVEKLLDR 822


>gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 221

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     +  ++++ SGY+     +G+ A+E+ R+   D+II+D+ L +I 
Sbjct: 1   MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S    +P+I +TA   + DE +  +   + YI+KP S+++ ++ ++  +
Sbjct: 61  GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
 gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
          Length = 234

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+E   +L    +    +  +   +G +AL     + P +I++D+ L  I G 
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S    +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREIRAKS---NVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRR 121


>gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
 gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
          Length = 240

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D +  ++L    ++  G+      NG +AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 14  ARILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 74  GVLRRLQADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131

Query: 123 A 123
           A
Sbjct: 132 A 132


>gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX]
 gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX]
          Length = 230

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        L+   G+       G  ALE+  +   D++++D+ L  +SG
Sbjct: 1   MTRVLVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +++ S    +PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRTLRQKS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|50083860|ref|YP_045370.1| OmpR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49529836|emb|CAG67548.1| transcriptional regulator protein (OmpR family), response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter sp. ADP1]
          Length = 228

 Score =  157 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K VM+VED      L RD +E SG+      +G EA E   Q KP+++I+D+ +  + G
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|150375913|ref|YP_001312509.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150030460|gb|ABR62576.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 121

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 69/119 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VEDNE+N  +    +   G+  L   NG   +ELA   KPD+I+MD+ L  + G
Sbjct: 1   MTRILLVEDNEMNRDMLSRRLSRRGFEVLIAENGQAGVELAASEKPDLILMDMSLPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T++IK D     IPVIA+TA AM  D E   K GC+ Y SKP+ L   +  I++ +
Sbjct: 61  WEATRRIKADPLTSAIPVIALTAHAMASDREMALKAGCDDYDSKPVDLPQLVRKIEQLL 119


>gi|27380235|ref|NP_771764.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27353389|dbj|BAC50389.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 121

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/121 (66%), Positives = 103/121 (85%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T NG EAL+L R+ +PD+++MDIQL ++S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYQTTGTSNGYEALDLVRKMRPDLVLMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET++++I
Sbjct: 61  GLEVTRWIKDDPELRSIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 229

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+IV+DN+   ++   L+   GYI  +  NG EA+        D+II+DI +  + 
Sbjct: 1   MAYNVLIVDDNKEIREVVNVLLSNEGYIVNEADNGAEAITKCEAQ--DLIILDIMMPGMD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  ++I+E   L  +P++ +T+  +  D+E     G + Y+ KP S S  +  +   I
Sbjct: 59  GFKTCRRIRE---LTNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALI 115

Query: 121 GE 122
             
Sbjct: 116 RR 117


>gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
 gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
          Length = 236

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  + V++V+D      + R  +E   Y  L+  N  +A  +    +PD++++D  L   
Sbjct: 1   MSERTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLPGG 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ +++K D   QEIPVI +TA   + +  +  + G + YI+KP +    +  IK  
Sbjct: 61  SGIELLRRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYITKPFAPRELIARIKAL 120

Query: 120 IGEA 123
           +  +
Sbjct: 121 LRRS 124


>gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 268

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++V+D     ++    ++ +GY  +   +G +AL L    +PD++++D+ L ++ G 
Sbjct: 24  ATVLVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVMLPKLDGF 83

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 84  AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140


>gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 228

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K++IVED E        L+   G+  +   NG++AL +  +   D++++D+ L  +S
Sbjct: 1   MMSKILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++E   +  +P+I +TA   + D+    + G + Y++KP S    +  I+  +
Sbjct: 61  GMEVCRKLRE---VSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1786

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 75/121 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1439 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1498

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T+ I++  EL  +PV+A+TA AM GD +   + G   +I+KPI +++  +T+ KY+  
Sbjct: 1499 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1558

Query: 123  A 123
            A
Sbjct: 1559 A 1559



 Score = 98.7 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     +    +E+ G+     R+G EA+        +V ++D ++  + GLE 
Sbjct: 1287 VLVVDDNATARDIMCTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346

Query: 65   TK-----------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
             +              +     +  ++ V+A A      +I +     YISKPIS S  +
Sbjct: 1347 ARQIQLQAQSQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLL 1406

Query: 114  ETIKKYIGE 122
            + I   IG 
Sbjct: 1407 DGIMNAIGR 1415


>gi|290958330|ref|YP_003489512.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260647856|emb|CBG70961.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 246

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++ ED+          +   GY      +G+EAL  A + +PDV+++D+ +  I 
Sbjct: 1   MPQNVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAQAHRTRPDVLVLDVMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + ++ + +    P++ +TA     D       G + Y+ KP  +      ++  +
Sbjct: 61  GLQVCRVLRAEGD--RTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 224

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           ++  G+      +G    EL RQ   D++I+DI + +++G
Sbjct: 1   MAKILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQEAFDLLILDIIMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +  ++       PVI +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 61  LELCRLYRQQYGYL-TPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 237

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 54/116 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E    A+Q  PD++I D+ +  + G  
Sbjct: 12  RLLLVDDEPGLRTAVQAYLEDEGFDVTTAEDGEEGFIKAQQMLPDLVISDVMMPRLDGFG 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + ++++ED  L   PVI +TA  M  D  +    G + YI KP      +  ++  
Sbjct: 72  LLRKLREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 127


>gi|163845631|ref|YP_001633675.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222523334|ref|YP_002567804.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163666920|gb|ABY33286.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222447213|gb|ACM51479.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 313

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+  +D+     L  D +  +G+  L   +G+  + +A++  PD+I++D+ L  + G E
Sbjct: 9   TVLFADDDPHIRTLLSDTLTQAGFAVLAAEDGLSLIRIAQEQLPDIILVDLMLPGVDGYE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +Q++ D+    +P+I VTA A   D       G + YI+KP + +  +  I+  +  
Sbjct: 69  AIRQLRNDTRTAHLPIIIVTARANPSDVVIGFDTGADDYITKPFNEAELVARIRSLLRR 127


>gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IVED     KL +  +    Y   +  NG +AL L + +  D+II+D+ L +ISG
Sbjct: 1   MEKILIVEDEAKIRKLIKSYLAEE-YKLKEAANGKKALSLFKNNNFDLIILDLMLPKISG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I++   + +IP+I +TA + +  +      G + Y++KP S    +  +K  + 
Sbjct: 60  EEVCQNIRQ---ISDIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALLR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 226

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G EAL+   +   D++++D+ L E SG
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEKSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++       +P+I VTA   + D+    + G + YI+KP S    +  I+  + 
Sbjct: 61  TEVCRELR---TTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D     +L    +E  GY  ++  +G EA+ + +    D++I+DI + +I G E+
Sbjct: 6   ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKIDGYEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +QI+       +P+I ++A     D+      G + Y++KP S    +  +   +  
Sbjct: 66  ARQIR---IKHNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLRR 120


>gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
 gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
          Length = 231

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL+    ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
 gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
          Length = 233

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDNE    +        GY      +G E  +   +   D++I+D  L  + G+ 
Sbjct: 2   KILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESWDLVIVDWMLPVMDGVT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E   L  +P+I +TA   + D+    + G + Y++KP S    M  IK     
Sbjct: 62  LCRKIRE---LSTVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVTRR 117


>gi|300868772|ref|ZP_07113383.1| putative chemotaxis protein [Oscillatoria sp. PCC 6506]
 gi|300333333|emb|CBN58575.1| putative chemotaxis protein [Oscillatoria sp. PCC 6506]
          Length = 121

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 70/120 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K V++V+D   + ++  +L++ SG   ++  +G+EA+E    + PD+II+DI +  ++G
Sbjct: 1   MKTVIVVDDQHSHREMISNLLKGSGINVIEASDGVEAIEKIEVNCPDLIILDIVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K +   Q IP++  +    + D     K G +AYI+KP      + T+K+++ 
Sbjct: 61  FEVCRRLKNNPLTQNIPIVFCSVKGEEFDRYWGIKQGADAYIAKPFGPRELVGTVKQFLR 120


>gi|284006387|emb|CBA71623.1| two-component system, OmpR family, phosphate regulon response
           regulator [Arsenophonus nasoniae]
          Length = 234

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++++++VED     ++   ++E +G+  ++  +   A+    +  P +I++D  +   S
Sbjct: 6   MVRRILVVEDETAIREMVCFVLEQNGFQTVEADDYDSAIAQLIEPYPALILLDWMIPGGS 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++   +K D   + IP++ +TA   + D  R  + G + Y++KP S    +  +   +
Sbjct: 66  GIQLIAHMKRDQLTRNIPIMMLTARGEEEDRVRGLEIGADDYLTKPFSPKELIARVNAIL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
 gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
          Length = 219

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D+   + L +D +E  GY      NG EALE+  +  PD+II D+ + E+ G 
Sbjct: 13  KHLLLVDDDPNLVLLVKDYLEFQGYDVTTAENGKEALEILTKEIPDMIICDVMMPEMDGY 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++D+    +PV+ ++A     D  +    G + Y+ KP      +  ++  + +
Sbjct: 73  SLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLKQ 132

Query: 123 A 123
           A
Sbjct: 133 A 133


>gi|154253255|ref|YP_001414079.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157205|gb|ABS64422.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 124

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/121 (68%), Positives = 107/121 (88%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL++  GY  LQTR+G+EALE+AR ++PD+I+MDIQL E+S
Sbjct: 4   MSKKVLIVEDNELNMKLFHDLLDAHGYETLQTRDGIEALEIARTNRPDLILMDIQLPEVS 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IKED  L+ IPV+AVTAFAMKGDEE+IR+GGCEAYISKPIS++ F+ET+++++
Sbjct: 64  GLEVTKWIKEDDSLRSIPVVAVTAFAMKGDEEKIREGGCEAYISKPISVTQFLETVQRFL 123

Query: 121 G 121
            
Sbjct: 124 R 124


>gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
 gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
          Length = 233

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M    +++++D++   +L  + ++T GY      +G + +E  + H  D++++D+ +  I
Sbjct: 1   MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E  K+I+E S    +PV+ +TA   + D     + G + Y++KP S    +  IK  
Sbjct: 61  DGFETLKRIRESSI---VPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|119715983|ref|YP_922948.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536644|gb|ABL81261.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 123

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++ +D+    +L    + T G+  +   +G  A+E  +  +PD+ ++D+ +  +SG
Sbjct: 1   MARILVADDDVDIRELVEFKLSTLGHDVVAVSDGAAAIEACQAQRPDLAVLDVMMPGVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L+  + I+ D  L ++PVI +TA A + D E     G + YI+KP S       ++  + 
Sbjct: 61  LDAIRAIRADPALADLPVILLTARAQESDVETGFDSGADDYITKPFSPRELASRVQALLT 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1846

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN    K    ++ +  +      +G  AL +A +  PD+I+ D+ +  + G+E+
Sbjct: 1477 VLLVDDNADMRKYLTRIL-SEHFQVEAVADGKTALAVAIEQVPDLILSDVMMPRLDGVEL 1535

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++ D   +E+P I ++A A +    +  + G + Y+ KP S    +  +  ++
Sbjct: 1536 LQALRSDPRTKEVPFILLSARAGEESIIKGLEAGADDYLIKPFSAQELVSRVNAHL 1591


>gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 229

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L+ A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|307545329|ref|YP_003897808.1| response regulator receiver protein [Halomonas elongata DSM 2581]
 gi|307217353|emb|CBV42623.1| response regulator receiver protein [Halomonas elongata DSM 2581]
          Length = 123

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D    +     L+E +G+      +G  AL L  +  PD++++DI L  I G
Sbjct: 1   MARVLVVDDEPNIVLSLEFLMEQAGFEVTTAEDGETALRLIDEGAPDLVLLDISLPGIGG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ ++++ D   + + +I +TA   + + E+    G + YI+KP S    +E ++  +
Sbjct: 61  FEVLERLRSDPAHRHLSIIMLTAHGREVEREKGLALGADDYITKPFSTRTLVEKVRALL 119


>gi|300714679|ref|YP_003739482.1| two-component response regulator [Erwinia billingiae Eb661]
 gi|299060515|emb|CAX57622.1| Two-component response regulator [Erwinia billingiae Eb661]
          Length = 232

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  L   +G +AL L   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFDVLVAGDGEQALTLI-DNTIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
 gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
          Length = 2213

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 70/117 (59%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VEDN++N ++  +L+E +G +     +G EA E  +    DVI+MDIQ+  + G  
Sbjct: 1876 HVLLVEDNDINQQVATELLEMAGLVVTTASDGQEACERVKTELFDVILMDIQMPVMDGYT 1935

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ I++ S  +E+PVIA+TA AM GD E+    G   +I+KPI  +     + K++
Sbjct: 1936 ATRHIRKFSGYEELPVIAMTANAMDGDREKCLDAGMNDHIAKPIDPASMFAALVKWV 1992



 Score = 99.0 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59
            ++IV+D+ +  ++ R   E   ++  +  +G EA+E    +        V+ +D ++  +
Sbjct: 1729 ILIVDDSPVARQILRQNGEALTFVVDEASSGEEAIEKLHDYDQLGTPFKVVFIDWKMPGM 1788

Query: 60   SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             G+E   +IK +  ++  P ++ VTA+        +        ++KP++ S  ++ 
Sbjct: 1789 DGVETCHRIKSEENIESPPNIVMVTAYDRHELIHEMEGMEVSGVLTKPVTQSSMLDA 1845


>gi|289677217|ref|ZP_06498107.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Pseudomonas
           syringae pv. syringae FF5]
          Length = 194

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE   Q   D+++MD  +  + G 
Sbjct: 71  ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 130

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +  +  + ++I
Sbjct: 131 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 188


>gi|222529736|ref|YP_002573618.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456583|gb|ACM60845.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 234

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M    V IV+D +  ++L  + +   GY      NG   L+   + +PD++I+DI L +I
Sbjct: 1   MSAYTVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G EI K+I+++SE   +P+I ++A   + D+    + G + YI KP SLS     IKK 
Sbjct: 61  DGYEICKRIRKNSE---VPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|153875815|ref|ZP_02003442.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152067721|gb|EDN66558.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 341

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M KK V++V+DN  N+K+  ++++         ++G +AL    +  PD+I++DI + ++
Sbjct: 1   MSKKLVLVVDDNSENLKVLGNILKEHDLSPAFAQSGFKALTSINKKIPDLILLDIMMPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ K++K+D   + IP+I +TA     D     + G   Y++KP +    M  +  +
Sbjct: 61  DGFEVCKRLKQDETTKGIPIIFLTAKVETDDVVTGLELGAVDYVTKPFNSRELMSRVNTH 120

Query: 120 I 120
           +
Sbjct: 121 L 121


>gi|126659636|ref|ZP_01730766.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126619082|gb|EAZ89821.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 377

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 60/116 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   GY   +  NG  AL    Q   D+I++DI +  ++G E+
Sbjct: 8   ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIHQVPADLILLDINMPSMNGYEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K D   Q+IP+I ++A     D+ +    G   YI+KP      +  I+  +
Sbjct: 68  CQQLKNDPITQDIPIIFISALDDVLDKVKAFDLGGVDYITKPFQAEEVIARIENQL 123


>gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 229

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED +   ++ +  +E  GY +    NG +AL    Q   D++++DI + ++S
Sbjct: 1   MAERILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMIPQLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++      + P+I +TA     D+      G   YI+KP  +   +  ++ ++
Sbjct: 61  GLEVLRRVRRAEN--QTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHL 118

Query: 121 GE 122
            +
Sbjct: 119 RK 120


>gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 229

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +  +G+      +  +      +  PD+I++D  L ++S
Sbjct: 1   MAVNILLVEDDAAVREMLLLPLRRAGFEITGVADVAQGKAALLERVPDLILLDWMLPDVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  +++K D   +++P+I +TA   + D+ R  + G + Y++KP S    +  I+  +
Sbjct: 61  GIDWARELKRDPFTRDVPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 261

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G  AL   R+ KPD++++D+ L  ++
Sbjct: 37  MKARVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLMLPGMN 96

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K I+ +S    +P++ +TA +   D     + G + Y+ KP      +  I+  +
Sbjct: 97  GIDVCKAIRSESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARM 153

Query: 121 GE 122
             
Sbjct: 154 RR 155


>gi|224536541|ref|ZP_03677080.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521797|gb|EEF90902.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1493

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 1/115 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN     L R+++    Y  L+  NG E L+LA +  PD+II D+ +  + GLE+
Sbjct: 1228 ILIVEDNRELRSLLRNILSKK-YTILEAANGEEGLKLASEAIPDMIISDVMMPVMDGLEM 1286

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             K+IKE+ ++  +P+I ++A A   D     + G + YI+KP S S     I   
Sbjct: 1287 IKRIKENKDICYVPIILLSAKASLDDRITALEQGIDDYITKPFSSSYLKARIASL 1341


>gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 216

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++++D+   + L +D +E  GY  +   NG EAL++  Q  PD+II D+ + E+ G 
Sbjct: 10  KRLLLIDDDPNLILLVKDYLEFRGYDVITAENGREALDVLAQDIPDMIICDVMMPEMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++D  +  +PV+ ++A     D  +    G + Y+ KP      +  ++  + +
Sbjct: 70  ALVEYVRQDPSMNWVPVLFLSAKGQSNDRVKGLNTGADVYMVKPFEPEELVAQVESSLRQ 129

Query: 123 A 123
           A
Sbjct: 130 A 130


>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
 gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
          Length = 1765

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 71/120 (59%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDN++N ++  + +E  G +     NG  ALE       D+++MD Q+  + G 
Sbjct: 1421 KRILLVEDNDMNQEVATEFLEQVGVVLSIADNGQIALEKLAMQSFDLVLMDCQMPVMDGY 1480

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T+++++   L  +PVIA+TA AM GD E     G   +I+KPI +S+    + +Y+G+
Sbjct: 1481 QATRELRKLPGLANLPVIAMTANAMAGDREMCLDAGMNDHIAKPIEVSLLYSRLLQYLGD 1540



 Score =  110 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ +DN     + R  +E+ G++    ++G +A+E  +     V ++D Q+ E++GLE
Sbjct: 1280 RILVADDNATARDILRTTLESMGFVVDAVKSGSDAIERCQHTHYPVALIDWQMPEMNGLE 1339

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              + I  + E     V+ V+A A     E+I + G   YI+KPIS S  ++ I   +G+
Sbjct: 1340 AAEVIFAEQETPP-KVLIVSAHANAEFLEQIERSGIAGYITKPISASRLLDGIMSSLGK 1397


>gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
 gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
          Length = 239

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D     +L    +  +G+  +   NG EAL  A  H PD+ ++D+ L ++ G 
Sbjct: 11  AKLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVMLPDMDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++     +  PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 71  TVTRRLRA--AGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128


>gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 229

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 246

 Score =  157 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    +K+    +  +GY  L  ++G +ALE+  +  PD++++D+ L ++ G  +
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +S    +P+I +TA     +       G + Y++KP S       I   +  
Sbjct: 64  CRRIRAESC---VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRR 118


>gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 228

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K VM+VED     +L RD +E +G+      +G EA     Q KP ++I+D+ +  + G
Sbjct: 1   MKHVMLVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSFTQRKPSLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
 gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L+ A Q   D+II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++ T G+      +G +AL      KPD++++D+ L  + 
Sbjct: 1   MTARILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAFHDAKPDLVLLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++   I+ +S    +P+I +TA +   D  +  + G + YI KP +    +  I+  +
Sbjct: 61  GIQVCDLIRAESG---VPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRL 117

Query: 121 GEA 123
             A
Sbjct: 118 RPA 120


>gi|332662093|ref|YP_004444881.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332330907|gb|AEE48008.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 227

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    +++ +  +E  GY  +   +G EAL +A + +P++I++DI + +I G+E
Sbjct: 5   KILIVDDEPDILEILQYNLEKEGYQVVTASSGEEALVVAEKEQPNLIVLDIMMPKIDGVE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   E     +  +TA      +      G + YI+KPI   +F+  IK  +  +
Sbjct: 65  VCRILRTKPEFDRTAITFLTAREEDYSQIAALDVGGDDYITKPIRPRVFISRIKALLRRS 124


>gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
 gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
          Length = 235

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED+     L R  +E  GY      +G +AL+       D +I+D+ L  + G
Sbjct: 1   MKQILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLMLPNVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++    + +PVI ++A + + D     + G + Y++KP S+   +  IK    
Sbjct: 61  LEICRRIRQM--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120]
 gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120]
          Length = 225

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA  +    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +    +  L+  NG EA+++   +    +II+D+ + ++ G 
Sbjct: 13  KILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDIFYEEKDIALIILDVMMPKMDGW 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+++S+   +P+I +TA + + DE      G + YISKP S  I +  ++  +  
Sbjct: 73  EVCREIRKNSK---VPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 129


>gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|284993166|ref|YP_003411721.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
 gi|284066412|gb|ADB77350.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
          Length = 919

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN         L+    +      NG EAL+  R  +P V++ D+ +  + G ++
Sbjct: 600 VLVVDDNADMRAYLTRLLSPV-WTVRTATNGQEALDAVRAARPHVVVTDVMMPGLDGFDL 658

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + ++ D  L+++PV+ +TA A +         G + Y++KP   +  +  ++  +  A
Sbjct: 659 LRALRADPALRDVPVVMLTARAGQEAAVEGFDAGVDDYLAKPFESAELIGRLRAVVERA 717


>gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 241

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D      L    +  +GY      +G EAL LA   KPD++I+D+ L ++ G 
Sbjct: 10  ARLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++      ++P++ +TA     D+    + G + Y++KP  L   +  I   +  
Sbjct: 70  TVTRKLRA--AGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 127


>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1792

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 75/121 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1445 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1504

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T+ I++  EL  +PV+A+TA AM GD +   + G   +I+KPI +++  +T+ KY+  
Sbjct: 1505 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1564

Query: 123  A 123
            A
Sbjct: 1565 A 1565



 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 17/135 (12%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + R  +E+ G+     R+G EA+        +V ++D ++  + GLE 
Sbjct: 1287 VLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346

Query: 65   TK-----------------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI 107
             +                    +     +  ++ V+A A      +I +     YISKPI
Sbjct: 1347 ARQIQLQAQSQSQSQSQPQSHPQPQPQPQPKILMVSAHADHEFLTQIEQLALAGYISKPI 1406

Query: 108  SLSIFMETIKKYIGE 122
            S S  ++ I   IG 
Sbjct: 1407 SASRLLDGIMNAIGR 1421


>gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
 gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
          Length = 228

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    +  R  +  +GY      +G+EAL++    +PD +++D+ +  + GLE
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   +  ++P++ +TA     +       G + Y+ KP +L   +  ++  +  
Sbjct: 62  VCRQLRGTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118


>gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1784

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 75/121 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1437 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1496

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T+ I++  EL  +PV+A+TA AM GD +   + G   +I+KPI +++  +T+ KY+  
Sbjct: 1497 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1556

Query: 123  A 123
            A
Sbjct: 1557 A 1557



 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + R  +E+ G+     R+G EA+        +V ++D ++  + GLE 
Sbjct: 1287 VLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346

Query: 65   TK---------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             +            +     +  ++ V+A A      +I +     YISKPIS S  ++ 
Sbjct: 1347 ARQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLLDG 1406

Query: 116  IKKYIGE 122
            I   IG 
Sbjct: 1407 IMNAIGR 1413


>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 954

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+DN +N K+   ++E  GY      NGMEAL    +H+  ++ MD Q+ E+ GL
Sbjct: 815 QRLLVVDDNPVNQKVALKMLEKLGYRVDVAGNGMEALAAVCRHQYPLVFMDCQMPELDGL 874

Query: 63  EITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E T+ I+   +    +P+IA+TA AM GD E   K G + +ISKPI      E + +++ 
Sbjct: 875 ETTRLIRSQEQAGTHLPIIAMTANAMAGDRENCLKAGMDDFISKPIVPDQLREILSRWLP 934

Query: 122 EA 123
            A
Sbjct: 935 SA 936



 Score =  105 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57
           ++V +V+DN  N  L +  +           +   AL L RQ        D+ I+DI + 
Sbjct: 666 RRVCLVDDNPTNRSLLQYHVSGWNMHHESAVDAPSALALLRQAAADGTPFDLAIIDIHMP 725

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           +I GL++ + IKED  ++   +I +TAF  +GD    ++ G  AY+ KP+      + I+
Sbjct: 726 DIGGLQLCRLIKEDPAIRATHLIVLTAFGQRGDSIAAKEAGASAYLPKPVRERQLADCIR 785

Query: 118 KYIGE 122
             +G 
Sbjct: 786 LILGR 790


>gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
 gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
          Length = 232

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    L    ++  G+   +  NG +AL      + ++ I+D+ L +I 
Sbjct: 1   MSINILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESEQLELAILDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GFTICQKIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1102

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L  DL+   GY       G  AL+ A+   PD+I++DI + E+ G E+
Sbjct: 13  ILIVDDMVDNLRLLSDLLTEQGYKVRGVSKGTMALKAAKSFSPDLILLDIMMPEMDGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + +K      +IP+I ++A     D+ +    G   YI+KP  +   +  +K ++ 
Sbjct: 73  CQHLKAAENTCDIPIIFISALNDAADQLKAFAVGGVDYITKPFRIEEILARVKNHLR 129



 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 76/118 (64%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDNE N+    + +E  GY      NG+EA+++AR+ KP++++MDIQ+  + GLE 
Sbjct: 979  ILLAEDNEANISTIVEYLEAVGYRVATALNGVEAIQMARELKPNLVLMDIQMPAMDGLEA 1038

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T+Q++ D E  ++P+IA+T+ AM GD E+  + G   Y++KP+SL   +E I   +  
Sbjct: 1039 TRQLRADVEFVQLPIIALTSLAMPGDREKCLEVGVNEYLAKPVSLKKLVEAIAFQLDR 1096



 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRN-GMEALELARQHKPDVIIMDIQLQEISGLE 63
           V+IVED+    +     +   G       + G   ++ A Q  PD II+D+QL + SG +
Sbjct: 845 VLIVEDSAPAAEQIAHYLAELGINNSAIYSLGTGIVQEAIQINPDAIILDLQLPDRSGWD 904

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +  Q+K +   Q IP++ V+         R        Y+ KP S   F   ++K 
Sbjct: 905 VLAQLKAEPRTQNIPILIVSVADEP---VRSPAASVYEYLVKPFSRHQFQLALRKL 957


>gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 243

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED      L ++ +E +GY  +   +G+  L L R H  D++I DI L ++ G
Sbjct: 16  MHTILIIEDEPRVASLLKNGLEENGYQTMIAYDGVMGLRLFRVHTFDLVISDIILPKMDG 75

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++ +    IP++ +TA     D+      G + Y+ KP         I+  + 
Sbjct: 76  FELCKEIRKTN--PGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLK 133

Query: 122 E 122
            
Sbjct: 134 R 134


>gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + 
Sbjct: 1   MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  +
Sbjct: 61  GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|158335457|ref|YP_001516629.1| sensory box/response regulator [Acaryochloris marina MBIC11017]
 gi|158305698|gb|ABW27315.1| sensory box/response regulator, putative [Acaryochloris marina
           MBIC11017]
          Length = 572

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED      + ++++E  GY  L+  NG+  L+LA+Q  PD+I+ D+ + E+ G
Sbjct: 1   MPKILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSPPDLIVCDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ K ++ +  +  IP+I +TA   +    +    G + YI+KP +    +  I   +
Sbjct: 61  FDVLKGLRANPGIGSIPMIFLTAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARL 119


>gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 224

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED++   +  +  +E  G+ A    +G+ ALEL R   PD++I+D  L  + G
Sbjct: 1   MPRILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRTTAPDLVILDRMLPLVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            EI ++++       IP+I +TA   + D+    + G + Y++KP S    +  +   +
Sbjct: 61  AEICRRLRAAG---NIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAVL 116


>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1784

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 75/121 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1437 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1496

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T+ I++  EL  +PV+A+TA AM GD +   + G   +I+KPI +++  +T+ KY+  
Sbjct: 1497 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1556

Query: 123  A 123
            A
Sbjct: 1557 A 1557



 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + R  +E+ G+     R+G EA+        +V ++D ++  + GLE 
Sbjct: 1287 VLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346

Query: 65   TK---------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             +            +     +  ++ V+A A      +I +     YISKPIS S  ++ 
Sbjct: 1347 ARQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLLDG 1406

Query: 116  IKKYIGE 122
            I   IG 
Sbjct: 1407 IMNAIGR 1413


>gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 235

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D     +L    +  +G+  +   NG EAL      +PD+ ++D+ L ++ G 
Sbjct: 8   AKLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPDMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            IT++++     +  PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 68  TITRKLRA--AGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125


>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1702

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N +L   L+E  G+      NG++A+  +     D+I+MD+Q+  + G E 
Sbjct: 1472 ILLAEDNVVNQRLAIRLLERFGHKVTLAENGLQAVAASEMKDFDLILMDVQMPHMGGFEA 1531

Query: 65   TK--QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T   +I+E    +  P+IA+TA A++ D+E+    G + Y+SKPI+       I+KY+G
Sbjct: 1532 TSTIRIREKVMNKHTPIIAMTAHALQKDKEKCLNAGMDDYLSKPINPDQLRAVIEKYLG 1590



 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 9/125 (7%)

Query: 1    MLKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMD 53
            MLK V  +I++DN+   ++   ++   G  A  T +   A  + R+        + I MD
Sbjct: 1322 MLKDVNTLIIDDNKSTRRVLHQMLSEYGVSADTTDSQDSAFHMLREAAMKKQPYEYIFMD 1381

Query: 54   IQLQEISGLEITKQIKEDSELQEIPVIAVT-AFAMKGDEERIRKGGCEAYISKPISLSIF 112
             QL    G  + + IK+D    +  +I +      +GD E  R      Y+SKP+S    
Sbjct: 1382 AQLNGKDGFLVAEAIKQDPSFGQASIIMLICGSGQRGDPEN-RSSVISGYLSKPVSPVEM 1440

Query: 113  METIK 117
            +E I+
Sbjct: 1441 LEVIQ 1445


>gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 235

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D +   ++    +   GY  +   +G+EALE  ++ K D+II+DI + ++ G+
Sbjct: 8   KTILVVDDEKDIREIIEIYLINEGYNIVLASDGIEALEKLKKEKIDLIILDIMMPKLDGI 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +I+ED   +++P+I ++A +   D+      G + YI KP +    +  +K  +  
Sbjct: 68  RTCIKIRED---KKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRR 124


>gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1]
          Length = 1149

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV++V+D+  N+      +E  G I    RNG EA+E   QH   D+++MD+ + E+ G
Sbjct: 1025 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1084

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+ I++    +++P+IAVTA AMK D++R  + G   Y++KPI L      I+ ++ 
Sbjct: 1085 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1144

Query: 122  E 122
            +
Sbjct: 1145 Q 1145



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E  ELA Q+ PD I++D++L + SGL +
Sbjct: 759 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTV 818

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D        G   Y  KP S     E   + 
Sbjct: 819 LQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 870



 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED++L  +    LI              +AL L RQ+  D +I+D++L ++ G 
Sbjct: 879 KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGN 938

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   +  +EE 
Sbjct: 939 ELLKRMTAEDIRAFPPVIVYTGRNLTREEEA 969


>gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
 gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
          Length = 1491

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/118 (38%), Positives = 70/118 (59%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++ EDNE+N+    D +   GY     RNG EA+ LA +  PD+I+MDIQ+ E+ GL
Sbjct: 1370 ARILLAEDNEINITAIGDYLSDKGYTLTIARNGREAVALAHETHPDLILMDIQMPELDGL 1429

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T+Q++        P+IA+TA AM GD ER    G   Y++KPISL   +  I++ +
Sbjct: 1430 SATRQLRATPTFATTPIIALTALAMPGDRERCLAAGANEYMAKPISLRSLVLVIEQLL 1487



 Score =  107 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++ED+E + +     +            G  AL+      PDVI +DIQL + SG E+ 
Sbjct: 1232 LVIEDSETSGEQIARYLGELRIDTTIHSRGAGALDRVLSVHPDVIFLDIQLPDQSGWEVL 1291

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            + +K D  L+ IPVI ++      D  R    G  AY+ KPI+  I   T+   
Sbjct: 1292 EHLKADPHLRSIPVIIISVLD---DRIRGMAAGASAYLVKPITRDILRHTLSSI 1342


>gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED     +L +D +E S +      +G + LE A ++  D+II+DI L  + G
Sbjct: 1   MSKVLIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+E    +EIP++ V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKQIRE---AKEIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLN 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1131

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
            K V++V+D+  N+     L+E +    +   +G EA++ L  Q + D+++MDI +  + G
Sbjct: 1011 KTVLLVDDDMRNVFSISTLLEENKLTVITASDGQEAIDTLISQSQIDLVLMDIMMPVMDG 1070

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T++I+ ++   ++P+IA+TA AM GD E+  + G   YI+KP+ ++  +  +  ++
Sbjct: 1071 YEATRKIRAENRFAKLPIIALTAKAMPGDREKCLEAGASDYITKPLDVNQLLSVMHTWM 1129



 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+     + +D   T GY  L    G E L  AR+++P  II+D+ L  + G+ + 
Sbjct: 744 LIIEDDARFASVVQDFARTKGYKTLVALQGDEGLAYARRYEPTAIILDLHLPALDGISVL 803

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           K +K+D +L  IPV  ++A     DE+++   G  AY+ KP++     + 
Sbjct: 804 KLLKDDKKLSSIPVHVMSA----SDEQQLVLPGALAYLQKPLTKQDLEDA 849


>gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 227

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D++    L +  +E  GY  L+  NG EAL +  ++  D++I+D+ +  + 
Sbjct: 1   MNINILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMINENDFDLVILDVMMPILD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+    +I+E+     +P+I ++A   + D+ +    G + Y+SKP      +  +K  +
Sbjct: 61  GISACIKIREN---YTMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|119487003|ref|ZP_01620875.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119455932|gb|EAW37066.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 125

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 75/122 (61%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE+N+ + +  +   GY  L   +G + +EL+R  +PD+I+MD+ L  + G
Sbjct: 1   MAKILLVEDNEMNLDMLKRRLSRKGYELLIAVDGAQGVELSRSDQPDIILMDMSLPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T++I+     + IPVIA+TA AM GD E+    GC+ Y +KPI     +E I+  + 
Sbjct: 61  WQATREIRNYPNTKHIPVIALTAHAMAGDREKCMAAGCDDYDTKPIEFPRLLEKIETLLK 120

Query: 122 EA 123
           +A
Sbjct: 121 KA 122


>gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + +++VED+   +      +   GY  LQ ++G   L  A    PD++++D+ L E++G
Sbjct: 5   TRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K++++    ++ PV+ ++A  M+ D+      G + Y+ KP  L   +  IK  + 
Sbjct: 65  FEVLKELRQ--RGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+    +L R  +E  GY  +QT +G+EA+++ RQ +PD++I+DI L ++ GL 
Sbjct: 6   TILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQRPDLVILDIMLPDLDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E      +P++ +TA  M  D       G + Y+ KP +    +  I+  +  
Sbjct: 66  VCQKVRE---FASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRR 121


>gi|229028377|ref|ZP_04184501.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732925|gb|EEL83783.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|153954118|ref|YP_001394883.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219854730|ref|YP_002471852.1| hypothetical protein CKR_1387 [Clostridium kluyveri NBRC 12016]
 gi|146346999|gb|EDK33535.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219568454|dbj|BAH06438.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 232

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D +  + + R  +E +GY      NG EA++L  +  P +I++D+ L +ISG 
Sbjct: 5   KKILVVDDEQKIVDVIRAYLEKAGYEVHSAYNGTEAVKLFEKISPALIVLDLMLPDISGE 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I K +++ S    +P+I +TA   +         G + Y++KP S    +  +  ++  
Sbjct: 65  DICKMLRKKSR---VPIIMLTAKVDEKTVLEGFNIGADDYVTKPFSPKQLVARVMAHLRR 121


>gi|16273290|ref|NP_439531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae Rd KW20]
 gi|68250104|ref|YP_249216.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|145629534|ref|ZP_01785332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|145632874|ref|ZP_01788607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145634311|ref|ZP_01790021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145639024|ref|ZP_01794632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148826862|ref|YP_001291615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229844161|ref|ZP_04464302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|229846768|ref|ZP_04466875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|260580787|ref|ZP_05848613.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260582709|ref|ZP_05850497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|319897031|ref|YP_004135226.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Haemophilus influenzae F3031]
 gi|1172480|sp|P45189|PHOB_HAEIN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB)
           [Haemophilus influenzae Rd KW20]
 gi|68058303|gb|AAX88556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|144978377|gb|EDJ88141.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|144986530|gb|EDJ93096.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145268291|gb|EDK08285.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145271996|gb|EDK11905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148718104|gb|ABQ99231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229810257|gb|EEP45976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|229813155|gb|EEP48843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|260092604|gb|EEW76541.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260094275|gb|EEW78175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|309750983|gb|ADO80967.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2866]
 gi|317432535|emb|CBY80895.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3031]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED     ++    +    Y  ++  +   A+   +++ P +I++D  L   S
Sbjct: 1   MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  + IK+      IP+I +TA + + D       G + YI+KP S  I +  I+   
Sbjct: 60  GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|292486595|ref|YP_003529463.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Erwinia amylovora CFBP1430]
 gi|292897832|ref|YP_003537201.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291197680|emb|CBJ44775.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291552010|emb|CBA19047.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora CFBP1430]
 gi|312170655|emb|CBX78918.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora ATCC BAA-2158]
          Length = 233

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  L   +G +AL L      D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDS-TVDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L+  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  LDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 233

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   G+  L+  NG EA++L   Q    +II+D+ + ++ G 
Sbjct: 13  KILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDLFFEQKDIALIILDVMMPKMDGW 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + I++     ++P+I +TA + + DE +    G + YISKP S  I +  ++  +  
Sbjct: 73  ETCRTIRK---YSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRR 129

Query: 123 A 123
           +
Sbjct: 130 S 130


>gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 228

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K VM+VED      L RD +E +G+      +G +A    +Q KP+++I+D+ +  + G
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
 gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
          Length = 227

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++E+SGY      +G +AL    +  PD++++D+ L  + 
Sbjct: 1   MSSKILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNRINPDLVLLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI ++I++      +P+I +TA     D     + G + Y+ KP      +  +   +
Sbjct: 61  GIEICRRIRQ---TSVVPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|47567165|ref|ZP_00237881.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49480172|ref|YP_034844.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52144720|ref|YP_082105.1| response regulator [Bacillus cereus E33L]
 gi|165871786|ref|ZP_02216430.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635708|ref|ZP_02394019.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640695|ref|ZP_02398956.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688522|ref|ZP_02879729.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|177653790|ref|ZP_02935891.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568207|ref|ZP_03021116.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035772|ref|ZP_03103175.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041367|ref|ZP_03108661.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046799|ref|ZP_03114021.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218901780|ref|YP_002449614.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222094337|ref|YP_002528396.1| response regulator [Bacillus cereus Q1]
 gi|225862556|ref|YP_002747934.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227816544|ref|YP_002816553.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228913274|ref|ZP_04076908.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925774|ref|ZP_04088858.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932013|ref|ZP_04094905.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944339|ref|ZP_04106712.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089647|ref|ZP_04220909.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154289|ref|ZP_04282409.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229182915|ref|ZP_04310148.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|254684337|ref|ZP_05148197.1| response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722139|ref|ZP_05183928.1| response regulator [Bacillus anthracis str. A1055]
 gi|254738801|ref|ZP_05196504.1| response regulator [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743813|ref|ZP_05201497.1| response regulator [Bacillus anthracis str. Kruger B]
 gi|254755025|ref|ZP_05207059.1| response regulator [Bacillus anthracis str. Vollum]
 gi|254762241|ref|ZP_05214085.1| response regulator [Bacillus anthracis str. Australia 94]
 gi|301052236|ref|YP_003790447.1| response regulator [Bacillus anthracis CI]
 gi|47556221|gb|EAL14556.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49331728|gb|AAT62374.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978189|gb|AAU19739.1| response regulator [Bacillus cereus E33L]
 gi|164712511|gb|EDR18044.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511410|gb|EDR86795.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528967|gb|EDR91723.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170667547|gb|EDT18303.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081182|gb|EDT66258.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560699|gb|EDV14675.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991739|gb|EDX55704.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022334|gb|EDX61019.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196027852|gb|EDX66465.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539177|gb|ACK91575.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221238394|gb|ACM11104.1| response regulator [Bacillus cereus Q1]
 gi|225790637|gb|ACO30854.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227002844|gb|ACP12587.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600539|gb|EEK58126.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228629113|gb|EEK85820.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693677|gb|EEL47378.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228815241|gb|EEM61489.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827596|gb|EEM73338.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833789|gb|EEM79342.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846325|gb|EEM91343.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374405|gb|ADK03309.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 243

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60
           ++++++V+D E  + + +  +E +GY+A    +  E  +  R+ +P D+II+D  L ++S
Sbjct: 1   MERILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHMLPDMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I K ++++     IP+I +TA   + +     + G + YI+KP         I+  +
Sbjct: 61  GLDICKILRQEGIT--IPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei]
          Length = 223

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D+     L    +E  G+  +   +G  A++ A     D II+D+ L +++
Sbjct: 1   MSNHILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVMLPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K I+E  E    PV+ +TA     D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GFEVLKAIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|146307499|ref|YP_001187964.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575700|gb|ABP85232.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 227

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN   +    D ++  G+     ++G+  L LA     D+I++DI L  I G +
Sbjct: 2   RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED    E+P++ +TA     D  +    G + Y+ KP +LS  +  I+  +  +
Sbjct: 62  VCKRLREDGR-SEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120


>gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 5/126 (3%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M  K   V+I+ED+    +L +  +E  GY+     +G   LE   +  PD I +DI L 
Sbjct: 1   MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           +I G E+ ++I+ D+  ++IP+I +T      D+ +    G + Y+ KP   +  +  +K
Sbjct: 61  KIDGWELCQEIRWDN--KKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMK 118

Query: 118 KYIGEA 123
             +  A
Sbjct: 119 AVMRRA 124


>gi|269958888|ref|YP_003328677.1| response regulator [Anaplasma centrale str. Israel]
 gi|269848719|gb|ACZ49363.1| response regulator [Anaplasma centrale str. Israel]
          Length = 456

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL +  +    Y  L   +G EA++LAR+  PD+I++D+ +  + 
Sbjct: 1   MTARILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLAREKHPDLILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  ++++ D     IPV+ VTA     D        G + +++KPI+       I+  
Sbjct: 61  GYETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISSGADDFLTKPINDVALFSRIRSL 120

Query: 120 IG 121
             
Sbjct: 121 TR 122



 Score = 57.8 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+MI++ +++  +    +++          N  + +        D+ I+D+      GL
Sbjct: 157 AKIMILDSDKVRSEHMNSVLQEYFQETAVLDNPSQDVNFQNAESYDLFIVDLNFGG-DGL 215

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEE---RIRKGGCEAYISKPISLSIFMET 115
            +    + ++  +  P++ +       D E   R  + G   YI  PI  +  +  
Sbjct: 216 RLCSNFRSNNNTRYTPILVL--LDESDDTEILSRAFEIGISDYIMAPIDSNELLAR 269


>gi|257094697|ref|YP_003168338.1| response regulator receiver protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047221|gb|ACV36409.1| response regulator receiver protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 122

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I +D +  +     L+   G+  L   +G EAL   R  +PD++++D+ +  ++
Sbjct: 1   MSKKILIADDEQNIVISIEFLLRREGFEVLVAGDGEEALARVRAERPDLVLLDVMMPRMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + ++ D +L    ++ +TA     +  +    G + Y++KP S    +  ++K +
Sbjct: 61  GFDVCQALRADPDLSGTRILMLTAKGRDTEVSKGLGLGADGYMTKPFSTKELLAEVRKLL 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
          Length = 232

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D      L    ++   Y   +  + MEALE   + + D+ I+DI L  + 
Sbjct: 1   MSEKILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREELDLAILDIMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       P+I +TA   + D+      G + Y++KP      +  +K  +
Sbjct: 61  GFSICQKIRERYTY---PIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D     +L +  +  +G+      +G+ AL  AR  +PD+II+D+ L  + G E+
Sbjct: 6   ILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQARTLRPDLIILDLMLPALDGFEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q++      +  ++ +TA   + D  +  + G + Y+ KP S    +  ++     
Sbjct: 66  CRQLR---TFSDAYILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRR 120


>gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 234

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++++D+ L  +     +E +G+      +  + L LA++  PD++++DI L  + 
Sbjct: 1   MSKSILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTPPDLVLLDINLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  ++ +E+      PVI VTA   + D+    + G + YI+KP   +I +  IK  +
Sbjct: 61  GLDALRRFREEVGA---PVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|229159665|ref|ZP_04287676.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623816|gb|EEK80631.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 223

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
 gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED           +   GY      +G     L      D++I+D  L    
Sbjct: 1   MSSRILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVED 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++ ++ +     PV+ +TA     +       G + Y++KP +    +  ++  +
Sbjct: 61  GIQLLRRFRQKNRT--TPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 224

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED        R  +   GY      +G +ALE+AR+  PD++++D+ L  I 
Sbjct: 1   MSA-ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++      ++P+I +TA     D     + G + Y+ KP +    +  I+  +
Sbjct: 60  GLEVARRLRA---ASDVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
 gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++ ED     +L    ++   Y      +G EAL +  +  PD++++D  L ++S
Sbjct: 1   MKPYVLVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWMLPKVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI ++++       +P+I +TA   + D  R    G + Y++KP S +  M  ++  +
Sbjct: 61  GIEICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|303327814|ref|ZP_07358254.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
            3_1_syn3]
 gi|302862175|gb|EFL85109.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
            3_1_syn3]
          Length = 1165

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +V++ EDNE+N ++  +L+E  G   +  ++G EA+EL R    D+I MDIQ+  + GL
Sbjct: 1041 ARVLLAEDNEINQEVALNLLEGLGMRVVLAKDGAEAVELCRGQSFDLIFMDIQMPIMDGL 1100

Query: 63   EITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T++I+    +   E P+IA+TA AM GD E+  + G   +I+KPI        +  ++
Sbjct: 1101 TATRKIRALPGIGPSEPPIIAMTAHAMSGDREKSLEAGMNDHITKPIDPRTLRRKLCAWL 1160

Query: 121  GE 122
              
Sbjct: 1161 AR 1162



 Score = 40.5 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 7/125 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNG-----MEALELARQHKPDVIIMDIQLQ 57
            ++V++   +     +   L++          +G          LA     D+ ++D  L 
Sbjct: 892  RRVLLAAGSPACRDVLARLLDDMRMTVRTVDSGTAALEAARAALAEGAPFDLALVDHHLP 951

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETI 116
               GL+    +   S      ++ V A  M    +      G    + KP+  +     +
Sbjct: 952  GEGGLDCAAALGRLSNGLLPRLLLVPASYMDQYHDAPGLDAG-TRILPKPVWRASLRNAV 1010

Query: 117  KKYIG 121
               +G
Sbjct: 1011 VAALG 1015


>gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D++   +L   +++  G+   +  NG +ALE   + K D+ ++DI + ++ G
Sbjct: 1   MNKILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEKIDLCVLDIMMPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  KQ +   E  ++P++ +TA +    + +  + G + Y++KP  +   +  IK  + 
Sbjct: 61  YEFCKQARRYYE--DMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G EALE A+ + PD++++D+ L ++ G
Sbjct: 1   MTRVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDN-PDLVLLDLGLPKVDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++   E + IPV+ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 60  LEVCRRLRA--EGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D+   ++L    +E +GY  L   +G   L LAR  +PD++++D+ L +  G
Sbjct: 1   MQTILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTERPDLLVLDLMLPDRDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I + ++ D  L  +P+I +TA     D     + G + YI KP +    +  ++  + 
Sbjct: 61  YSIVQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 239

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  +G+      +GM AL+L R  +PD++++D+ L ++ G 
Sbjct: 6   ARLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLPDMDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++E  + Q +PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 66  TVTRRMRE--KGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 123


>gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRKA 122


>gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + G
Sbjct: 1   MPTILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 61  FQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 656

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+E   K+    + +  Y      +G E + LA   K D+I++D  L +++G++
Sbjct: 2   RILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWMLPKLTGID 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + KQ++  +     P+I +TA     ++      G + Y+ KP+ +   +  I+  +  +
Sbjct: 62  LCKQLR--NARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRS 119



 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++IV+D+   +   R ++E  G+      +  +  E   Q  PD++I+D+Q+ E SG+
Sbjct: 523 AKLLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEFSGI 582

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + ++ D    E+PV+ ++A       +++   G + Y+ KPI     +  +   I  
Sbjct: 583 DLCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLNRIER 642

Query: 123 A 123
           +
Sbjct: 643 S 643



 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE--I 59
             +++IV+D+    +     +           +  +A +   +++PDV+++D+   +   
Sbjct: 397 SPRLLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARNRPDVVLLDLCFPDSAG 456

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +GLE+  ++K       + V+         +  R+ + G   ++ KP++    M+ I K 
Sbjct: 457 NGLELLAELKTTQPPVPVVVLT--VKESFAERVRVARLGGRGFLRKPVAPQKVMDAIAKA 514

Query: 120 IGEA 123
           + ++
Sbjct: 515 LQQS 518


>gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 261

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED +  ++  RD +E + Y  L   +G+ AL+LAR+ + D++++DI L  + G
Sbjct: 20  MATILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLAREKQIDLVLLDIGLPGLDG 79

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++ED     IP++ V+A     D+ +    G + YI KP S+   +  ++ ++ 
Sbjct: 80  FSVCRVLREDL---HIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHLR 136

Query: 122 E 122
            
Sbjct: 137 R 137


>gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL RD +    Y  L+  +G  AL++  ++    +II+D+ + +++G 
Sbjct: 5   KILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDIFYQEKNIALIILDVMMPKMNGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+E     ++P+I +TA   + DE    + G + YISKP S  I +  +   +  
Sbjct: 65  EVCREIRE---TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRR 121


>gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
 gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L RD +E SG+      +G   L+ A     D++I+D+ L    G
Sbjct: 1   MSKILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDYDLLILDLMLPGTDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I +Q++   +++  P++ V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FDICRQVR---DVKNTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED           +E+ GY      +G  AL      +P  I++D+ +  + GL 
Sbjct: 2   RVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPFMDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ D +    P++ +TA     D       G + Y+ KP  L   +  ++  +  +
Sbjct: 62  MCRRLRADGD--RTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRS 119


>gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED     ++    +   GY  ++  +   A++   + KP +I++D  L   SG
Sbjct: 1   MTKILVVEDESAIREMISLFLTQQGYDIIEAADYQSAVKKLVE-KPQLILLDWMLPGRSG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  + +K+  + + IPVI +TA + + D       G + YI+KP S  I +  I+  + 
Sbjct: 60  IQFIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAMLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|304319971|ref|YP_003853614.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
 gi|303298874|gb|ADM08473.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
          Length = 238

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D     +   D +    Y  L+ ++G+EA E+ R  +PD++++DI +    GL 
Sbjct: 5   KILIVDDEASIREPLADYLAGHHYDILRAKDGLEAREVCRTAQPDLVLLDIMMPGEDGLS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +   ++E       PVI +TA A   D     + G + Y++KP +    +  IK  +  A
Sbjct: 65  L---LREWQATGGPPVILLTAMADDTDRIVGLELGADDYVTKPFNPRELVARIKAVLRRA 121


>gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 230

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +++IVED     +L +  +E  GY       G E L   ++H  D++++D+ L E+
Sbjct: 1   MSKGRILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPEL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGLE+ ++I+ + +  + PVI +TA     D+      G   YI+KP  +      I+ +
Sbjct: 61  SGLEVLRRIRANDD--QTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVW 118

Query: 120 IG 121
           + 
Sbjct: 119 LR 120


>gi|255034345|ref|YP_003084966.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254947101|gb|ACT91801.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1324

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN+      R+L E+  +  L+  NG+  L+LA +H PD+++ DI + +++GL+
Sbjct: 1073 TILIVEDNDQLRVFIRELFESE-FNTLEAENGLRGLQLANEHLPDIVLSDIMMPDMNGLQ 1131

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   +K++     IPV+ +TA A           G + Y+ KP    I    ++  I 
Sbjct: 1132 LCSHLKKNITTSHIPVVLLTARAQNQQIIEGLASGADDYLVKPFDPRILELKVRNLIR 1189


>gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 247

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D     ++    +   GY  +   NG EAL+     +PD++++D+ + ++ G  +
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQFHNCEPDLVVLDVMMPKLDGYGV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  IQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 248

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D     ++    +   GY  +   NG EALE  R  +PD++++D+ + ++ G  +
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKFRNLEPDLVVLDVMMPKLDGYGV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++++S   ++P++ +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  IQELRKES---DVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125


>gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 230

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +++IVED     +L +  +E  GY       G E L   ++H  D++++D+ L E+
Sbjct: 1   MSKGRILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPEL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGLE+ ++I+ + +  + PVI +TA     D+      G   YI+KP  +      I+ +
Sbjct: 61  SGLEVLRRIRANDD--QTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVW 118

Query: 120 IG 121
           + 
Sbjct: 119 LR 120


>gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42]
 gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +  + L +  +E SGY  +   +G EALELA    PD+I++D+ L ++ 
Sbjct: 1   MNKKILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ KQ+++   +  +P++ +TA   + D+    + G + Y++KP S       +K  +
Sbjct: 61  GIDVCKQLRQQKMM--VPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAIL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 245

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+        D +E SGY  +   +G EAL +   + PD+I+ DI +  ++
Sbjct: 19  MPLTILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEVYHPDLIVTDIVMPRMN 78

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++    + +PVI +TA     +     + GC+ Y+ KP  L      I   +
Sbjct: 79  GYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIHNLL 138

Query: 121 GEA 123
             +
Sbjct: 139 ERS 141


>gi|313679062|ref|YP_004056801.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151777|gb|ADR35628.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 228

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED      +    +   G++  +   G  ALEL R  +PD+I++D+ L EI GL
Sbjct: 7   KRILVVEDEARIADVLERYLRAEGFVTERAATGKRALELWRAFRPDLILLDLMLPEIGGL 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I+  S   ++P++ VTA A + D     + G + YI+KP S    +  ++  +  
Sbjct: 67  EVARTIRAQS---DVPILMVTAKAEEVDRLVGLELGADDYITKPFSPREVVARVRAVLRR 123


>gi|295703661|ref|YP_003596736.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294801320|gb|ADF38386.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 917

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
           K+V+IV+D++ N+   +  +   G   +   NG+E LE+ +     D+I+MDI + ++ G
Sbjct: 797 KRVLIVDDDQRNIFALKTALAKQGMTIMTAHNGIECLEMMKNSEPFDLILMDIMMPQMDG 856

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  ++I+ + +L ++P+IA+TA AMK D E+  + G   YISKP+ L+     ++ ++
Sbjct: 857 YEAMQKIRGELKLVDLPIIALTAKAMKNDREKCLEAGASDYISKPLDLNQLFSVMRVWL 915


>gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii]
          Length = 228

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +M+VED      L  D +E +G+      +G +A    +Q KP+++I+D+ +  + G
Sbjct: 1   MKHIMLVEDEVELAHLVCDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1782

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 75/121 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1435 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1494

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T+ I++  EL  +PV+A+TA AM GD +   + G   +I+KPI +++  +T+ KY+  
Sbjct: 1495 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1554

Query: 123  A 123
            A
Sbjct: 1555 A 1555



 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + R  +E+ G+     R+G EA+        +V ++D ++  + GLE 
Sbjct: 1287 VLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346

Query: 65   TK-------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             +          +     +  ++ V+A A +    +I +     YISKPIS S  ++ I 
Sbjct: 1347 ARQIQLQAQSQSQSQPQSQPKILMVSAHADREFLTQIEQLALAGYISKPISASRLLDGIM 1406

Query: 118  KYIGE 122
              IG 
Sbjct: 1407 NAIGR 1411


>gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++IV+D    + + R   E  G+   +T +G +AL   R    D++I+DI L  I G
Sbjct: 1   MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +Q++ +   Q  PVI +TA A + D     + G + Y+ KP S    +  ++  + 
Sbjct: 61  FGVLRQMRAEGFEQ--PVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 228

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 4   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 64  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|259906787|ref|YP_002647143.1| DNA-binding transcriptional regulator CpxR [Erwinia pyrifoliae
           Ep1/96]
 gi|224962409|emb|CAX53864.1| Two-component response regulator [Erwinia pyrifoliae Ep1/96]
 gi|283476573|emb|CAY72401.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia pyrifoliae DSM 12163]
 gi|310765997|gb|ADP10947.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617]
          Length = 233

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  L   +G +AL L      D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDS-TVDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|213968683|ref|ZP_03396825.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301385668|ref|ZP_07234086.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061742|ref|ZP_07253283.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302133321|ref|ZP_07259311.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213926616|gb|EEB60169.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 783

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 63/118 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE       D+++MD  +  + G 
Sbjct: 660 ARVLLVEDNPVNQLVAKGILSKLGCEVIISSHGGEALEQLEHGHFDLVLMDCNMPVMDGY 719

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + T+QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 720 QATRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 777


>gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134]
 gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134]
          Length = 232

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    ++L +  +E +GY      NG EA+++A+   P +I+MDI + ++ G+E
Sbjct: 8   KVLVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAIKVAKTFLPQLILMDIMMPKMDGVE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +Q++E +E+ +  +I +TA   +  E      G + YI+KPI     +  I      
Sbjct: 68  AGRQLREMTEIADTYIIYLTARVEEYSELAAFDVGADDYITKPIRPRALLSRIAALFRR 126


>gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D E  ++     +   G+  L  + G EALE A + KP ++++D  L E+S
Sbjct: 1   MSHTLLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKAGEKKPALVVLDWMLPEMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++ S +    +I VTA   + D+    + G + YI+KP SL      I+  +
Sbjct: 61  GIEVCRELRKMSRMG---IIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 70/121 (57%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K+++V+D     KL +D +   GY+ L+  +GMEA++L  + K   +II+D+ + ++ G
Sbjct: 4   AKILVVDDESRMRKLVKDFLTREGYMVLEAGDGMEAMDLFYEDKDIALIILDVMMPKMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++E     ++P+I +TA + + DE +  + G + YISKP S  I +  +   + 
Sbjct: 64  WQVCREVRE---TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|260173192|ref|ZP_05759604.1| histidine kinase [Bacteroides sp. D2]
 gi|315921466|ref|ZP_07917706.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695341|gb|EFS32176.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1376

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN   + + R+      Y  +   +G EAL+   +  PD+II D+ +  ++G+E
Sbjct: 1133 TILLVDDNHEILMILREYFVKE-YNIIMAIDGQEALDKCNRSLPDMIISDVMMPRMNGIE 1191

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +   +K++ +   IP+I +TA +   D+    + G +AYI KP +  +    ++  + ++
Sbjct: 1192 LCATLKKNLQTCFIPIILLTAKSQIEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLNKS 1251


>gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 237

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   ++++VED +   +     +E + +  ++  +G EAL  ++  +P ++++DI L  
Sbjct: 1   MKGQERILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ ++++   E   I VI +TA     D+    + G + Y+ KP +    +  I+ 
Sbjct: 61  MDGLEVCRRLR--VESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRA 118

Query: 119 YIGE 122
            +  
Sbjct: 119 VLRR 122


>gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D     +L    +E  GY  ++  +G EA+ + +    D++I+DI + ++ G E+
Sbjct: 6   ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKMDGYEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   +  
Sbjct: 66  TRQIR---VKYNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQLRR 120


>gi|229171369|ref|ZP_04298954.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612073|gb|EEK69310.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 223

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED E        L+   G+  L   +G  ALE    +  D++++D+ L  +SG
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNVDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+E   K   + ++   Y+     +G +  +  +    D+II+D+ L +++G++
Sbjct: 2   RILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFSYDLIILDVMLPKLNGVD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  S  Q  PV+ +TA     D+ +    G + Y+ KP  L      I+  +  
Sbjct: 62  LCQRLR--SAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRR 118


>gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 247

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E    L R  +E  GY+      G EA    ++  PD++I+D  L  +S
Sbjct: 1   MSARIVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEADIRLKEEVPDLLILDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++  E + +P++ +TA   + +  R    G + Y+ KP S    +  ++  +
Sbjct: 61  GVELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAML 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|332711348|ref|ZP_08431280.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332349897|gb|EGJ29505.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 579

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 67/120 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++K++++ED E   +   +L++  G+  +   NG   + LA+   PD+II D+ + E+ 
Sbjct: 1   MMRKILVIEDEEFVRENIIELLDAEGFDVIGAENGRVGVNLAKGTIPDLIICDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  +   +++DS +  +P I +TA A K D  +  + G + YI+KP + +  + +I   +
Sbjct: 61  GYSVLTSLRQDSMMATVPFIFLTAKAAKNDFRQGMELGADDYITKPFTRAELLGSIASRL 120


>gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D    ++     +   G+      +GM A+ LA++  P VI++D+ +  + G E
Sbjct: 8   RILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVMMPGMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + IK+     E+ VI +TA     D  +    G + Y+ KP S    +  I+  + 
Sbjct: 68  TCRMIKK--GGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLR 123


>gi|301155678|emb|CBW15146.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Haemophilus parainfluenzae T3T1]
          Length = 234

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L  +++  +G+      NG EAL+        ++++D+ +  ++G
Sbjct: 1   MSKILLVDDDIELTDLLAEVLRLTGFEVEIANNGQEALDKLNSSH-QLVLLDVMMPVLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+I++      +PV+ +TA   + D     + G + Y+ KP +    +  IK  + 
Sbjct: 60  IETLKKIRQ---TSNVPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1]
 gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1]
          Length = 228

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K VM+VED      L RD +E +G+      +G +A    +Q KP+++++D+ +  + G
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMVLDLMVPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++E S   ++P+I VTA   + D       G + Y+ KP S    +  ++  + 
Sbjct: 61  LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D+E    + R  +   GY     +NG E L +     PD+II+D+ + ++ G E+
Sbjct: 5   ILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKVDGFEV 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++E      +PV+ +TA     +  +    G + Y+ KP +L   +  ++  +  
Sbjct: 65  CRRLREGGST--VPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRR 120


>gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|240143855|ref|ZP_04742456.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257204143|gb|EEV02428.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 195

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL RD +    Y  L+  +G  AL++  ++    +II+D+ + +++G 
Sbjct: 5   KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEAALDIFYQEKNIALIILDVMMPKMNGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+E     ++P+I +TA   + DE    + G + YISKP S  I +  +   +  
Sbjct: 65  EVCREIRE---TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
 gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
          Length = 228

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D +L +K  +  +E          +G EA E  + +  D++++DI +   +G
Sbjct: 1   MKKVLVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNSYDIVLLDIMIPVYTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + ++E      +P+I +TA     D+    + G + YI+KP ++      IK  + 
Sbjct: 61  IEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|319783843|ref|YP_004143319.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169731|gb|ADV13269.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 123

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 96/123 (78%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKVMIVEDNELNMKLFRDLIE SGY  ++TRNG+EAL+LARQH+PD+I+MDIQL E+S
Sbjct: 1   MPKKVMIVEDNELNMKLFRDLIEASGYETVRTRNGLEALDLARQHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED EL  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|298675086|ref|YP_003726836.1| response regulator receiver protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288074|gb|ADI74040.1| response regulator receiver protein [Methanohalobium evestigatum
           Z-7303]
          Length = 296

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    ++L  D +   GY  +   NG EA+ +      DVI++D+ + +I+G E
Sbjct: 9   KILIVDDEPELVELLADYL--DGYNTIAAYNGQEAINIIESDNIDVILLDVMMPDINGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   IK D  L  IPV+ +TA +   ++      G + +++KP+        ++  + 
Sbjct: 67  VCTHIKNDDSLNYIPVLMITALSDHDNKIHGLDSGADDFLTKPVDGEELNARVRSALR 124


>gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +     ++  GY      +G+  L  AR+  PD+I++D  L  IS
Sbjct: 1   MAAHILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K++++     ++P+I +TA     D       G + YI KP SL   +  ++  +
Sbjct: 61  GLEICKRLRQTGN--KVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|153808930|ref|ZP_01961598.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185]
 gi|149128263|gb|EDM19482.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185]
          Length = 1384

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++++EDNE  + L   L+    Y      NG E + +      D+I+ D+ + E+ G+E 
Sbjct: 1129 ILVIEDNEELLHLMTKLLRHE-YNVFTAENGKEGIAVLENEDIDLIVSDVMMPEMDGMEF 1187

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K   E+  IPVI +TA   + D     + G +A+ISKP +L++    I+  +
Sbjct: 1188 CKYVKGKLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLL 1243


>gi|28868988|ref|NP_791607.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852228|gb|AAO55302.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331016879|gb|EGH96935.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 783

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 63/118 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE       D+++MD  +  + G 
Sbjct: 660 ARVLLVEDNPVNQLVAKGILSKLGCEVIISSHGGEALEQLEHGHFDLVLMDCNMPVMDGY 719

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + T+QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 720 QATRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 777


>gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 253

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     ++    ++ SGY  +   +G EALE+     PD++++D+ L ++ G 
Sbjct: 11  ATILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVMLPKLDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 71  AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRR 127


>gi|116625704|ref|YP_827860.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228866|gb|ABJ87575.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 1134

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN    +    L+    Y      +G EAL  A  + P +I+ D+ +  + G  
Sbjct: 636 RILLADDNPDMREYVERLLRDR-YDVTAVASGEEALHAAISNPPGLILSDVMMPGLDGFG 694

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + K+++E  E + IP+I V+A A +         G + Y+ KP +    +  +  ++
Sbjct: 695 LLKELRERPETRTIPLILVSARAGEESRVEGLGAGADDYLIKPFTARELLARVGAHL 751


>gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 226

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           + K+++V+D+    +L +  +E +G    L+  +G+EAL +  Q   D+++MDI +  + 
Sbjct: 1   MAKILVVDDDPNIRELVKVFLEEAGMEEILEASDGVEALSVMDQASVDLVVMDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+ ++    IPV+ +TA        +  + G + Y+ KP   +  +  +K  +
Sbjct: 61  GWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
 gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ ++++VED+E   K+    +    Y      +G +  E       D+I++D+ L +++
Sbjct: 1   MM-RILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEALAYDLILLDVMLPKLT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + ++I++      IPV+ +TA     D+      G + Y+ KP  +   +  I+  +
Sbjct: 60  GIGLCQRIRQSGYT--IPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML+K++IV+D +  +   +D  E  GY  +   NG EA+E   +   D+I++DI +  I 
Sbjct: 1   MLEKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK-DIDIILLDIMMPNID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+   +    P+I ++A   + D+ +    G + YI KP S+      ++ ++
Sbjct: 60  GFQVCQKIR---DKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|145636091|ref|ZP_01791761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
 gi|145270613|gb|EDK10546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
          Length = 231

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED     ++    +    Y  ++  +   A+   +++ P +I++D  L   S
Sbjct: 1   MTRKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  + IK+      IP+I +TA + + D       G + YI+KP S  I +  I+   
Sbjct: 60  GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E    L +D +E S +       G   LE A   + D+II+D+ L  + G
Sbjct: 1   MSRILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K I+E    +++P++ V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEVCKHIREK---KDVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+EL  +     + +  Y      +G E  EL      D+I++D+ L ++ G+ 
Sbjct: 2   KILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTLPKLDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      ++P++ +TA     D+      G + Y+ KP         I+  +  
Sbjct: 62  LCQRLRSQGH--QMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRR 118



 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +VM+V+D+   + + R L+E  G   +   +  +  EL     PD++I+DI++ +ISG 
Sbjct: 512 ARVMVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGT 571

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++ DS    +P++ +TA +      ++   G + ++SKPI     +  I   +  
Sbjct: 572 ELCQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLER 631



 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 10/120 (8%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI-----S 60
           +IV+ +    K       T G+      N   A        PD+++++     I      
Sbjct: 390 LIVDRDRSLAKKLIAEATTWGFDLEVATNLTIARNKIGLKSPDLVLLE---PAIFPTAAE 446

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            L +  ++K+ +    IP I  T          + + G   ++ K +  S  ++ I + +
Sbjct: 447 SLTLLAELKKHA--PPIPAIIFTERDDLTTRLEVARLGEHTFLPKSVPPSQILDAINQVL 504


>gi|119485362|ref|ZP_01619690.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457118|gb|EAW38244.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 372

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+D   N+ L +  +E  G+  +   +G  ALE      P+++++D+ + E+ G E+
Sbjct: 12  ILAVDDLPDNLFLLKLALEQEGHNVVLVEDGKTALEQIEASPPNLVLLDVMMPEMDGYEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           TK+I+ + +   IP++ +TA   +         G + +I KP+ +      ++  + 
Sbjct: 72  TKRIRSNPKYPYIPILLITAH-EQSSVVEGLDAGADDFIRKPVQIDELQARVRSLLR 127


>gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  V+IV+D      + R  +   GY  L   NG++AL++ ++   DVI++D+ L E+S
Sbjct: 1   MMVTVLIVDDEATFRDVLRFNLNRDGYDVLTASNGVQALDVYKKA--DVILLDLMLPEMS 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I++ S    +P+I VTA   + D+    + G + Y++KP S    +  I+  +
Sbjct: 59  GEDVCRKIRQHS---SVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAIL 115

Query: 121 GE 122
             
Sbjct: 116 RR 117


>gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 4   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 64  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2]
 gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 224

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           ++  G+      +G    ++ +    D++I+DI + +I+G
Sbjct: 1   MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEPFDLLILDIIMPKING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +  ++    Q IPVI +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 61  LELCRLYRQMFGYQ-IPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
 gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
          Length = 231

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+          +++ GY   +  NG+EALE+  Q K   I+MD+ + ++ G++
Sbjct: 5   KILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQKIHCILMDVMMPKMDGIQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               I+E      IP+I ++A +   D+      G + YI+KP +    +  +K  +  
Sbjct: 65  AIMHIRE---TSNIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRR 120


>gi|220907491|ref|YP_002482802.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7425]
 gi|219864102|gb|ACL44441.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7425]
          Length = 379

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 56/120 (46%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+     L    +   GY     R+G+E LE A +  P ++I D  +  I G
Sbjct: 1   MFRILVIDDDPTTRLLLSRKLNQQGYGVEVARDGVEGLEQAAKFLPHLVICDWMMPMIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++K D        + +TA     D  +    G + ++SKP+ +      ++  + 
Sbjct: 61  LEVCRRLKADPRFATTFFVLLTAKDDIADRIQGLDAGADEFLSKPLEMDELRARVQAGLR 120


>gi|330940352|gb|EGH43458.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 187

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 59  RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 118

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 119 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 176


>gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G EAL+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +++ S    +PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRSLRQRS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|311745310|ref|ZP_07719095.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1]
 gi|126577843|gb|EAZ82063.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1]
          Length = 230

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++VED+     + ++ +E  GY     R+G E     ++ K D+ ++DI + + 
Sbjct: 1   MSKAKLLVVEDDPNLGDILQEYLEMKGYEPTLCRDGEEGWNKFKKDKYDLCLLDIMMPKK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+IK+  +   +P++ +TA   K D     K G + YI+KP S+   +  +   
Sbjct: 61  DGFTLAKEIKKVQD--NLPILFLTAKNQKDDIIEGLKIGADDYITKPFSMEELLLRVTAI 118

Query: 120 IGE 122
           +  
Sbjct: 119 LRR 121


>gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida
            KT2440]
          Length = 1155

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV++V+D+  N+      +E  G I    RNG EA+E   QH   D+++MD+ + E+ G
Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+ I++    +++P+IAVTA AMK D++R  + G   Y++KPI L      I+ ++ 
Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1150

Query: 122  E 122
            +
Sbjct: 1151 Q 1151



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E  ELA Q+ PD I++D++L + SGL +
Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTV 824

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D        G   Y  KP S     E   + 
Sbjct: 825 LQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876



 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED++L  +    LI              +AL L RQ+  D +I+D++L ++ G 
Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGN 944

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   +  +EE 
Sbjct: 945 ELLKRMTAEDIRAFPPVIVYTGRNLTREEEA 975


>gi|315122068|ref|YP_004062557.1| two component response regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495470|gb|ADR52069.1| two component response regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 123

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 112/123 (91%), Positives = 121/123 (98%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKVMIVEDNELNMKLFRDLIETSGY+++QTR+G+EALE+ARQHKPD+IIMDIQL EIS
Sbjct: 1   MPKKVMIVEDNELNMKLFRDLIETSGYMSIQTRSGLEALEIARQHKPDIIIMDIQLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEITKQIKED+ELQ+IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI
Sbjct: 61  GLEITKQIKEDNELQDIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120

Query: 121 GEA 123
           GEA
Sbjct: 121 GEA 123


>gi|294498311|ref|YP_003562011.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348248|gb|ADE68577.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 917

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
           K+V+IV+D++ N+   +  +   G   +   NG+E LE+ +     D+I+MDI + ++ G
Sbjct: 797 KRVLIVDDDQRNIFALKTALAKQGMTIMTAHNGIECLEMMKNSEPFDLILMDIMMPQMDG 856

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  ++I+ + +L ++P+IA+TA AMK D E+  + G   YISKP+ L+     ++ ++
Sbjct: 857 YEAMQKIRGELKLVDLPIIALTAKAMKNDREKCLEAGASDYISKPLDLNQLFSVMRVWL 915


>gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 251

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E    +    +E  GY       G +AL+   +H PD+I++D+ L ++ G E
Sbjct: 28  RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++       +PV+ +T      D  R    G + +++KP  L      ++  +  +
Sbjct: 88  VCRTLR--DRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRS 145


>gi|284036190|ref|YP_003386120.1| Crp/Fnr family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283815483|gb|ADB37321.1| transcriptional regulator, Crp/Fnr family [Spirosoma linguale DSM
           74]
          Length = 350

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++++EDN++  +   +++E SGY      NG   +ELA   +PD+II DI +  + G
Sbjct: 1   MKNILLIEDNDIIRENTAEILELSGYRVTTANNGKAGIELALVDRPDLIICDIMMPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +   + ++  L  IP I +TA + + D  R  + G + Y++KP S S  +  I+  + 
Sbjct: 61  YGVLHIVNKNPALTGIPFIFLTAKSERDDFRRGMELGADDYLTKPFSESELLSAIESRLN 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|291287962|ref|YP_003504778.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885122|gb|ADD68822.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 537

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63
           ++IV+D+  N+++  DL+ +  +     ++G  AL++      PD+I++DI +  + G E
Sbjct: 9   ILIVDDSPENIRVLADLLGSD-FDIKIAKDGATALKILASPPYPDLILLDIMMPGMDGYE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++IK+    + IPVI +TA ++  D     + G   YI+KP +    M  I+ ++
Sbjct: 68  VCREIKKSFNTRNIPVIFITAKSLTEDIVLGFELGGVDYITKPFNEKELMARIQTHL 124


>gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
 gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
          Length = 232

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D E    L    +++  Y  L+  NG +AL+   +   D+ I+D+ L +I 
Sbjct: 1   MAINILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKEDIDLAILDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E+      PVI +TA     D+      G + YI+KP  +   +  +K  +
Sbjct: 61  GFDICQKIREN---HHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1559

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ +DN         L+    Y      +G  AL L R  KPD+++ DI +  + G 
Sbjct: 637 ARVLLADDNADMRDYVMRLL-REHYDIAAVADGQAALALVRHWKPDLVLADIMMPGLDGF 695

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ + ++E    Q++PVI ++A A +       + G + Y+ KP S    +  ++  +
Sbjct: 696 ELLQALRESPATQQLPVILLSARAGEESRSEGLEAGADDYLIKPFSARELLARVQSQL 753



 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++VED+         L+   G+      +  EA  LA     D++I DI L + SG 
Sbjct: 1439 RRVLLVEDHAPTRSALESLLVRRGFSVTAAASATEARALAASEHFDLLISDIGLPDGSGY 1498

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            ++  + +E   L     IA+T + M+ D  R R+ G + +++KP+ +    + +   
Sbjct: 1499 DLMAEFRERYGLVG---IALTGYGMEEDVMRSRRAGFKMHLTKPVRIQHLDQALATL 1552


>gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus
           UQM 2246]
          Length = 236

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I+ED     +         GY    + +G+E L  A+   PDV+++D+ L  ++GL+
Sbjct: 5   RILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTALPDVVLLDLNLPGMNGLD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     ++IP+I +TA   + D+      G + Y+ KP +  I +  +K  +  A
Sbjct: 65  VCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRRA 124


>gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
 gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
          Length = 224

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           ++  G+      +G    ++ +    D++I+DI + +I+G
Sbjct: 1   MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGNTGWKILQDEPFDLLILDIIMPKING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +  ++    Q IPVI +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 61  LELCRLYRQMFGYQ-IPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED        +  ++ + +  ++   G E +E AR+HKPDV+++DI L  + G
Sbjct: 1   MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K +++  E   + +I +TA +   D+    + G + YI KP +       IK  + 
Sbjct: 61  LEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|126650812|ref|ZP_01723028.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592477|gb|EAZ86495.1| two-component response regulator [Bacillus sp. B14905]
          Length = 265

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++++ED+    ++ +D +E  GY+      G+E L   ++   D++++D  L E+ 
Sbjct: 34  MKVKLLLIEDDAAIGRIVKDTMEQEGYLVTWATTGLEGLADFQEQPFDLVLVDWMLPEMD 93

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+ +S   ++P++ ++A   + D+    + G + YI+KP SL      +  ++
Sbjct: 94  GLTVCQNIRWES---DVPILMMSARKEEADKVEGLQ-GADDYIAKPFSLEELKARVASHL 149

Query: 121 GE 122
             
Sbjct: 150 RR 151


>gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 241

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      +    +E  G  +    +G EAL+L R  +PD++++DI L  + G+++
Sbjct: 14  VLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLLRPDLVLLDIHLPGMDGIDV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I++DS+    PVI VTA A   D+    + G + Y+ KP +    +  ++  +  
Sbjct: 74  LRAIRDDSQT---PVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRR 128


>gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 1155

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV++V+D+  N+      +E  G I    RNG EA+E   QH   D+++MD+ + E+ G
Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+ I++    +++P+IAVTA AMK D++R  + G   Y++KPI L      I+ ++ 
Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1150

Query: 122  E 122
            +
Sbjct: 1151 Q 1151



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E  ELA Q+ PD I++D++L + SGL +
Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTV 824

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D        G   Y  KP S     E   + 
Sbjct: 825 LQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876



 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED++L  +    LI              +AL L RQ+  D +I+D++L ++ G 
Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGN 944

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   +  +EE 
Sbjct: 945 ELLKRMTAEDIRAFPPVIVYTGRNLTREEEA 975


>gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 992

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 66/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VEDN +N ++ R+L+E +G       +G  AL L  + +   ++MD+Q+  + GL
Sbjct: 648 RRVLVVEDNAINQQVARELLEQAGLSVDVAGDGEHALRLLARERYAAVLMDVQMPVMDGL 707

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  ++I+ D    ++PVIA+TA A+  D E     G   +I KP+        + +++
Sbjct: 708 ETARRIRSDPAFADLPVIAMTAHALARDREASLAAGMNDHIGKPVDPRELYAVLARWM 765



 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISGL 62
           +M+V+DN  ++++  D++ +  +       G EAL L    + D  ++++D ++  + G+
Sbjct: 506 IMVVDDNPTSLRILADMLRSMRFSVTTATGGEEALRLLEGAESDVRIVLLDWKMPGMDGM 565

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++I+  +  +   VI VTA+  +         G + ++ KP+  S+  +TI   +G 
Sbjct: 566 ECARRIRALALPRPPAVIIVTAYGREEIRHNAENAGVDGFLLKPVGRSVLFDTIAMTVGP 625

Query: 123 A 123
           A
Sbjct: 626 A 626


>gi|302795646|ref|XP_002979586.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
 gi|300152834|gb|EFJ19475.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
          Length = 862

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 76/120 (63%), Gaps = 5/120 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60
           K+V++VEDN +N K+   L++  G++ +   +G+EA+E  +      D+++MDIQ+  + 
Sbjct: 728 KRVLLVEDNLVNQKVASRLLQKYGHVVITVSDGLEAVEALKSDHKAYDLVLMDIQMPGMD 787

Query: 61  GLEITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           GLE T++I++D   S  Q+IP+I +TA AMKG ++   + G + Y+ KP  +   + TI+
Sbjct: 788 GLEATRRIRKDELGSGWQKIPIIGLTANAMKGYQDICYEAGMDGYLPKPFDIKQVLSTIR 847


>gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 231

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|261867362|ref|YP_003255284.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293390893|ref|ZP_06635227.1| transcriptional regulatory protein CpxR [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261412694|gb|ACX82065.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290951427|gb|EFE01546.1| transcriptional regulatory protein CpxR [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 231

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+    +L   L++  G+      NG EALEL   H  D+I++DI +  ++G
Sbjct: 1   MAKILLVDDDAELTELLAQLLDLEGFQVNVANNGKEALELL-DHSYDLILLDIMMPVLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  KQI+++      PV+ +TA     D     + G + Y+ KP +    +  IK  + 
Sbjct: 60  IETLKQIRKN---YSTPVMMLTARGDDIDRILGLELGADDYLPKPFNDRELVARIKAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 231

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++++DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMVLDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + 
Sbjct: 1   MIPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     EIP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 234

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV++V+D E   +L R  +E +GY     +NG+E L    ++ PD++I+D+ L  I G+
Sbjct: 10  QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+IKE      +P+I VTA + + +     + G + Y+ KP S    +  ++  +  
Sbjct: 70  DLCKKIKEK---YSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRR 126


>gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2]
          Length = 251

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     +L    +  +G+  +   NG EAL LA Q  PD++++D+ L ++ G 
Sbjct: 11  ATLLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPDMDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T+++++       PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 71  TVTRRLRQIGM--NAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128


>gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 62/118 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++++D+   + L +D +E  GY  +   NG EALE+  Q  PD+II D+ + E+ G 
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEQDVPDMIICDVMMPEMDGY 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +Q++++     IPV+ ++A     D  +    G + Y+ KP      +  ++  +
Sbjct: 80  TFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 137


>gi|332705121|ref|ZP_08425203.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332356071|gb|EGJ35529.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 276

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 60/116 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ +    +  +G+      +G  A+E    ++PD+I++D+ +  I G E 
Sbjct: 10  ILVVDDTPTNLSVISQALHNAGFTVAVETDGESAIEQVNYNQPDLILLDVMMPGIDGFET 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++K +   ++IPVI +TA     D+ +    G   YI+KP      +  ++ ++
Sbjct: 70  CKRLKANPSNRDIPVIFMTALTDTVDQVKGLSIGAVDYITKPFQQDEVLARVRIHL 125


>gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E  + L    +  +GY  ++ R+G EA++  R+H  D++++D+ + E+ G
Sbjct: 1   MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I+       +P++ VTA     D  +  K G + Y++KP   +  +  I+  + 
Sbjct: 61  WETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 232

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           + ++  +I +D      L    +E  GY  ++  +G EA+ +      D++I+DI + ++
Sbjct: 1   MNRISILIADDEAEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAQ---YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 55/119 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G +  E A+   PD+II D+ +   +G  
Sbjct: 16  RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTIFPDLIISDVMMPRANGYA 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ED +L   PVI +TA  M  D       G + YISKP         +K  I  
Sbjct: 76  LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134


>gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
 gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
          Length = 256

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EI 59
           M  K+++VED     +L    ++ S +  +Q  +   A       KPD+I++D  +    
Sbjct: 27  MNAKILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGE 86

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG++  +++K++    +IP+I +TA   + ++      G + YI+KP S    +  +K  
Sbjct: 87  SGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAV 146

Query: 120 IGE 122
           +  
Sbjct: 147 LRR 149


>gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 231

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL+    ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +++  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+ELN      ++    Y      +G+ A EL + +  D+I++D+ L  + G+ 
Sbjct: 2   KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVMLPRLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +QI+  S  +++P++ +T      ++      G + Y+ KP      +  ++  +  
Sbjct: 62  LCRQIR--SSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRR 118



 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KV+ V+D+   + + + L+   G   +   +  +  E  R   PD++I+D+++   +G+
Sbjct: 379 AKVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGI 438

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI------ 116
           E+ + ++ D +  E+P++ +T         ++   G + ++SKPI     +  I      
Sbjct: 439 ELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 498

Query: 117 KKYIGE 122
            K +  
Sbjct: 499 VKLLRR 504



 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++ +D+ L     + L+E  GY       G EA+  A    PDVI++D+ +  ++G E 
Sbjct: 1379 VLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWET 1438

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
               +KE +E + IP++  + +    + +  R      ++SKP+  S  + ++++ I ++
Sbjct: 1439 MAMLKESTETKHIPIVICSVYKPTSNHQPSRD--FVDWVSKPVQESYLLHSLRQAIAKS 1495



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++IVED+    +LF  L E         + G EA+ L+++  PD++I+D+ L E  G  
Sbjct: 1500 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1559

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYIGE 122
            +   +++   L  IPV+  +A  +   E +  K G   +++K  ++   F + + + +  
Sbjct: 1560 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQR 1619


>gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
            33406]
 gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
            33406]
          Length = 1222

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 74/117 (63%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++V+DN +N+ +  +++  +G       NG+EA++  +++   +++MDIQ+ ++ G+E
Sbjct: 969  KILLVDDNAINLFVASEILRKAGCEIDTAGNGLEAIQKVKENPYRMVLMDIQMPQMDGIE 1028

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T +I++ +     P+IA+TA++MK D++R    G + YI+KPI     +  +K ++
Sbjct: 1029 ATAEIRKLNLAYTPPIIAMTAYSMKEDKDRFMVNGMDDYIAKPIKAESLISKVKAWL 1085


>gi|296447289|ref|ZP_06889217.1| response regulator receiver modulated diguanylate cyclase
           [Methylosinus trichosporium OB3b]
 gi|296255154|gb|EFH02253.1| response regulator receiver modulated diguanylate cyclase
           [Methylosinus trichosporium OB3b]
          Length = 455

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D   N+KL    +    +  L   NG +AL L R  + D++++D  +  + 
Sbjct: 1   MTARILIVDDLAANVKLLEARLTAEYFDVLSATNGTDALRLCRDDRCDIVLLDAMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+  ++K D     +PVI VTA     D  R    G + +++KP+     +  ++   
Sbjct: 61  GFEVCSRLKADPATAHLPVIMVTALDQPSDRVRGLDAGADDFLTKPVDEVALLARVRSLA 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 92.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED   + +     +    +      +  EAL  A +   D+  + + L +   L 
Sbjct: 156 RILLIEDRAASAERIVSALRGL-HEVTIEADPQEALFRAAEGGFDMAAVSLDLSDFDALR 214

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +P++ +     +    R    G   YI +PI  +  +  ++  +  
Sbjct: 215 LCSQMRSLERTRALPILIIADLDDRQRILRGLDLGVNDYIVRPIDRNELVARVRSQLRR 273


>gi|254410199|ref|ZP_05023979.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183235|gb|EDX78219.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1855

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 72/116 (62%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDNE N +   D ++  GY  +  ++G EA++L+++ KPD+I+MDIQ+ E+ GL  
Sbjct: 1738 ILLAEDNEANTQTLSDYLQGIGYEMIMAKDGKEAVQLSQRRKPDLILMDIQMPELDGLSA 1797

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+QI+ +     IP+IA+TA AM GD E+    G   Y++KP++L      I   +
Sbjct: 1798 TQQIRANPRTATIPIIAITALAMSGDREKCLAAGVSYYMTKPVNLKKLATIINALL 1853


>gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED        +  ++ + +  ++   G E +E AR+HKPDV+++DI L  + G
Sbjct: 1   MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K +++  E   + +I +TA +   D+    + G + YI KP +       IK  + 
Sbjct: 61  LEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
 gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
          Length = 223

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D E    + +   +  G+  ++  +G++A+E+ R+   D+IIMD+ + E+ G
Sbjct: 1   MSRLLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKESFDLIIMDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++I++       PV+ ++A   + D+    + G + Y+ KP S    M  +   + 
Sbjct: 61  FSAVREIRK---TSSTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|119511790|ref|ZP_01630892.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463563|gb|EAW44498.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 378

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 58/117 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D+     L + ++E  GY  +   NG E +  A  ++P ++I D  +  ++GLE+
Sbjct: 4   ILVIDDDISIQTLLKRMLEKQGYKVVAASNGEEGIAQAIAYQPALVICDWIMPGLNGLEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            K++K D  L     I +T+     D  +    G + +ISKPI  +     ++  + 
Sbjct: 64  CKRMKTDPNLSTTFFIFLTSLDSIADRVKGLDAGADDFISKPIEQNELKARVRAGLR 120


>gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 229

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 69/125 (55%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y  L+ R+G EAL L  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++      +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRQA 122


>gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D +    L    ++   Y   +  NG +AL+   + K D+ I+D+ L ++ 
Sbjct: 1   MAANILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I +QI+E       PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GFSICRQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|167567698|ref|ZP_02360614.1| response regulator receiver protein [Burkholderia oklahomensis
           EO147]
          Length = 347

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+    D ++  GY  +   +G +AL+   +  PDV+++D  + ++ G E 
Sbjct: 37  ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 96

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +IK+D   + +PVI +TA        R  + G   Y++KP+        I  ++  +
Sbjct: 97  CLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRRS 155


>gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
 gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++V+D +L +K  +  +E          +G EA+E  + +  D++++DI +   +G
Sbjct: 8   MKKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDYDIVLLDIMIPVYTG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + ++E      +P+I +TA     D+    + G + YI+KP ++      +K  + 
Sbjct: 68  IEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILR 124

Query: 122 EA 123
            +
Sbjct: 125 RS 126


>gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC
           12478]
          Length = 1405

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 56/116 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ +DN    +    L+ ++ Y      +G +AL + R   PD++I D+ +  + GL
Sbjct: 646 ARVLVADDNADMREYLTRLLRSADYRVEAVSDGRQALAVIRAEVPDLVISDVMMPRLDGL 705

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +  Q++ D     +PV+ ++A A +         G + Y+ KP + +  +  ++ 
Sbjct: 706 ALVAQLRADPRTAAVPVLLLSARAGQEASVEGLDAGADDYLVKPFAATELLARVRA 761


>gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
 gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 4/122 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
            K+++V+D     KL +D +   GY  ++  +G +A+++       ++II+D+ + ++ G
Sbjct: 4   AKILVVDDESRMRKLVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVMMPKMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+  S    +P+I +TA + + DE +  + G + Y+SKP S  I M  ++  + 
Sbjct: 64  WQVCREIRRHS---TVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 219

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++++D     KL +D +   GYI  +  +G E +E    +  D++I+DI + +I G
Sbjct: 1   MKKILVIDDEWKIRKLIKDYLVREGYIVDEAGDGEEGIEKFFSNIYDIVILDIMMPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E+S+   +P+I +TA A + D+        + Y+ KP +  + +  +K  + 
Sbjct: 61  WSVCRKIREESQ---VPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 885

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 67/118 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN  N +L   L++  G+   +  NG EA+ +  + +P +I MD+++  + G E
Sbjct: 670 RILVVDDNWTNRQLVVKLLKPLGFEVQEAENGQEAISIWEKWQPHLIFMDMRMPVMDGYE 729

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ IK+  + Q   +IA+TA   + D   I   GC+ ++ KP  + +  E I K++G
Sbjct: 730 ATQYIKQHLQGQATVIIALTASVFQQDRTVILSAGCDDFVRKPFRVEVLFEKISKHLG 787


>gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 1397

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 3/120 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED+ +N  +   ++   GY+     NG EAL   R+   D++IMDIQ+ E+ GLE
Sbjct: 1278 RILLAEDSAVNQLVVTGILSKLGYVVDPVFNGQEALARLREFAYDLVIMDIQMPEMDGLE 1337

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ I++ +      ++PVIA+TA AM GD E   + G   Y+SKPI     +  IKK++
Sbjct: 1338 ATRIIRDQASAVLRHDVPVIALTAHAMHGDREICLQSGMNDYVSKPIDPPALIGVIKKWL 1397



 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
            ++++V+DN  N  + R L+ + G    +      A+E  RQ         + I+D+++ E
Sbjct: 1119 RLLVVDDNAENRNMLRMLLTSWGVRVSEVSCASTAIERLRQAAEEGDPFRIAIIDMEMPE 1178

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            I GL + + IK+++ L +  ++ + +   + D E++R+ G  +++ KP+  S    T+ +
Sbjct: 1179 IDGLMLGRSIKDETALADTALLMMNSIGRRPDNEKLRRSGFFSFLVKPVRQSELYNTVSE 1238

Query: 119  YI 120
             +
Sbjct: 1239 VL 1240


>gi|288959103|ref|YP_003449444.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911411|dbj|BAI72900.1| two-component response regulator [Azospirillum sp. B510]
          Length = 134

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D    +   + L++ +G+     R+G EAL       PD+I++D  + +  
Sbjct: 1   MKPTILVVDDEPSIVLSLQVLMQRAGFDVRIARDGDEALRSVETFTPDLILLDAMMPKRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + ++ +   + +P+I +TA +   + ++    G   YI+KP S    + T+++++
Sbjct: 61  GFDVCQTLRTNPAWKTLPIIMLTARSRDVERQKGLALGATDYITKPFSTRDLLATVRRHL 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|260221594|emb|CBA30315.1| hypothetical protein Csp_C22930 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 433

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
            V++V+D   N+ L + L+    Y      NG  AL++   +  PD+I++DI +  + G 
Sbjct: 59  TVLVVDDTPENLLLMQSLLRDD-YKVKGANNGERALKIVAGEAPPDLILLDIMMPGMDGY 117

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++IK D + + IPVI +TA +   DE      G   YI+KPIS  I +  ++  +
Sbjct: 118 EVCRRIKADPKARHIPVIFLTAKSQTEDEAFGLSLGAADYITKPISPPIVLARVRNQL 175


>gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
 gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL RD +    Y  L+  +G EAL++  ++    +II+D+ + +I+G 
Sbjct: 5   KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEEALDIFYKEKNIALIILDVMMPKINGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++E     ++P+I +TA + + DE    + G + YISKP S  I +  +   +  
Sbjct: 65  DVCREVRE---TSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1166

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G   L   NG + ++   +H   D+I+MD+ + E+ G
Sbjct: 1037 RTVLVVDDDARNLFALSGILELHGIQVLHAENGRKGIDALAEHPDIDLILMDVMMPEMDG 1096

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+      ++P++ VTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1097 YAATAEIRRMPAHADLPIVTVTAKAMPGDREKSLAAGASDYVTKPVDADDLIACVRRWL 1155


>gi|167574776|ref|ZP_02367650.1| response regulator receiver protein [Burkholderia oklahomensis
           C6786]
          Length = 345

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+    D ++  GY  +   +G +AL+   +  PDV+++D  + ++ G E 
Sbjct: 35  ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 94

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +IK+D   + +PVI +TA        R  + G   Y++KP+        I  ++  +
Sbjct: 95  CLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRRS 153


>gi|83648723|ref|YP_437158.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636766|gb|ABC32733.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 242

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D+    +L    +  +G+      +G    +L     PD+II+DI L    G 
Sbjct: 6   KHIVVVDDDLEIRQLLSQYLSKNGFDVSPAEDGETLFKLLEGVTPDLIILDIMLPGDDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I +++++ S    +P+I +TA A   D     + G + YI+KP +    +  +K  +  
Sbjct: 66  TICQRLRKSS---TVPIIMLTANADDTDRIVGLEMGADDYIAKPFNPRELLARMKAILRR 122


>gi|326567041|gb|EGE17164.1| two-component system response regulator [Moraxella catarrhalis
           12P80B1]
          Length = 240

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 64/126 (50%), Gaps = 4/126 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQE 58
           M K+++++ED+    +L  D +  + Y       G   L++    + D  +I++D+ L +
Sbjct: 1   MNKQILLIEDDPDLAELISDYLSINYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPD 60

Query: 59  ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G+E+ ++++  +++ + ++P++ +TA     D     + G + YI+KP      +  I
Sbjct: 61  MDGMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120

Query: 117 KKYIGE 122
           +  +  
Sbjct: 121 RAVLRR 126


>gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED+     L R  +E  GY      +G  AL+       D +I+D+ L  + G
Sbjct: 7   MKQILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLMLPNVDG 66

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++    + +P+I ++A + + D     + G + Y++KP S+   +  IK    
Sbjct: 67  LEICRRIRQM--TRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
 gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
          Length = 237

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     +G  AL+L  Q+   ++I+D+ + ++
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   +P++ +TA     D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 891

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           KKV+IV+D+  N+      +E+     L   NG+  L++ ++H   D+I+MDI L E+ G
Sbjct: 771 KKVLIVDDDMRNIYATTIALESKQVEVLFAENGLSCLKVLKEHPDVDLILMDIMLPEMDG 830

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  + +++      +P+IA+TA AMK D+++  + G   Y+SKP+ L      I  ++ 
Sbjct: 831 YETMRALRQMPGFGTLPIIALTAKAMKDDKDKCLEAGASDYMSKPVKLEQLFARIHSWLS 890

Query: 122 E 122
            
Sbjct: 891 R 891


>gi|126656662|ref|ZP_01727876.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
            CCY0110]
 gi|126621882|gb|EAZ92590.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
            CCY0110]
          Length = 1324

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--------HKPDVIIMDI 54
             K+++VEDN       + L++   Y      +G+EAL L R            D+I+ DI
Sbjct: 944  AKILLVEDNADMRNYLKRLLDPY-YEVETANDGLEALTLIRNVSDHNNHGAMYDLILTDI 1002

Query: 55   QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
             +  + G E+ + ++++SE+Q+IP+I ++A A +  +    + G + Y+ KP S    + 
Sbjct: 1003 MMPRLDGFELLQSLRDNSEMQKIPIIMLSARAGEEFQIEGLEAGADDYLWKPFSARQLLA 1062

Query: 115  TIKKYI 120
             +K ++
Sbjct: 1063 RVKTHL 1068


>gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 232

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + 
Sbjct: 3   MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  +
Sbjct: 63  GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 226

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D+E   ++   ++   G+      +G  AL    + +PD++++D+ L  I G+
Sbjct: 4   AKILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLMLPGIDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I+ +S   ++P++ +TA +   D  R  + G + Y+ KP   +  +  ++  + E
Sbjct: 64  EVCRLIRAES---DVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE 120


>gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
 gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
          Length = 227

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED E      +  +E  G+  L+  +G   +ELA ++ P V+I+D+ L  I G
Sbjct: 1   MSKILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K ++E  +L +I +I +TA     D     + G + Y+SKP +    +  IK  I 
Sbjct: 61  FEVCKILRE--KLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 232

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D+    +L ++  +  GY      NG EAL+      PD++I+D+ + E+ G
Sbjct: 1   MVKLLLADDDARLSELVKEYFDGEGYEVTHAWNGREALDCMAMEMPDIVILDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  K I+  S    +PVI +TA     D     + G + Y+SKP +    +  IK  + 
Sbjct: 61  FDTLKHIRAKS---SVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 234

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    + + GY   +  N  E LE+  Q +  ++++DI +  + GLE+
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYKVFKANNAKEGLEILDQEEIHLVLLDIMMPGMDGLEM 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      IP+I ++A +   D+      G + Y+ KP +       +K  +  
Sbjct: 66  CRKIRE---TNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120


>gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1424

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60
            + V++V+D+  N+     ++E  G+  L   NG + +E+   H PD+  ++MD+ + E+ 
Sbjct: 1304 RTVLVVDDDARNLFALSGVLELHGFRVLHADNGRKGIEMLLAH-PDISVVLMDVMMPEMD 1362

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G   T +I+   +  ++P+IAVTA AM GD+E+    G   Y++KP+     +  +++++
Sbjct: 1363 GYAATAEIRAMPQYADLPIIAVTAKAMPGDQEKSLASGANDYVTKPVDTGDLIARVRRWL 1422



 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 3    KKVMIVEDNELNMKLFRDLIETS-------------GYIALQTRNGMEALELARQHKPDV 49
            ++++++E  E    L   + E +             G   +      EA           
Sbjct: 1143 RRLLVIE--ERPRGLLTLVAERAVADLAYDSDDPHGGIDIITAVGAQEAASTLAADPCHC 1200

Query: 50   IIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC-E---AYISK 105
            +++++ ++   G +  + ++ DS L  +PV+  T   +   +E+  +    +    ++S 
Sbjct: 1201 VVLELGMRHDEGADFLEAMRGDSALDSVPVLIHTGHRVDLVQEQGLRALAGDRPLDFLS- 1259

Query: 106  PISLSIFMETIKKYI 120
              SL    E I  ++
Sbjct: 1260 --SLDDLRERITLHL 1272


>gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K V+++ED+    +L RD +E +G+      +G   L ++     D++I+D+ + +++
Sbjct: 1   MIKSVLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMIPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I+E    Q+IP++ VT+     D  R    G + YI+KP   +  +  +K ++
Sbjct: 61  GFEVCKKIREK---QDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHL 117

Query: 121 GE 122
             
Sbjct: 118 AR 119


>gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii]
          Length = 238

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED+     L +  +   GY       G   L      + D +++D+ L  I 
Sbjct: 1   MSKRILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K+ +  +     P+I  +A + +       + G + Y++KP S+   +  IK  +
Sbjct: 61  GLEICKRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|265752180|ref|ZP_06087973.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236972|gb|EEZ22442.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1441

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++V+DNE        ++    Y  ++  NG + LE+ R   PD+++ D+ +  + G+E
Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLELPDLVLSDVMMPCMDGIE 1233

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K++ +   IP + ++A +   D  R  + G + YI+KP S       I   +
Sbjct: 1234 LLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLL 1290


>gi|218439149|ref|YP_002377478.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218171877|gb|ACK70610.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 384

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 60/116 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   GY   +  NG  A+       PD+I++DI +  ++G ++
Sbjct: 8   ILVVDDTPDNLRLLAAMLSKKGYTVRKALNGQIAIATVHSVPPDIILLDINMPNMNGYQV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K D + ++IP+I ++A     D+ +    G   YI+KP      +  I+  +
Sbjct: 68  CQTLKADEQTKDIPIIFISALDDVIDKVKAFNMGGVDYITKPFQGEEVIARIENQL 123


>gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 232

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D++   +  +  ++  G    + ++G++AL L ++ +  +I+MDI + ++ G++ 
Sbjct: 6   VLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIKA 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E    ++IP+I ++A +   D+      G + Y++KP +    +  +K  +  
Sbjct: 66  TFKIREK---KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 120


>gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 233

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G 
Sbjct: 6   KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I  
Sbjct: 66  EICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 122


>gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 837

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED E N  + R ++E  G+      +G  A+E    +  D I+MDIQ+  + G+
Sbjct: 710 RRILLVEDEETNRDVARRMLEKFGWDVTVAADGQAAVEQVFANHFDCILMDIQMPVMDGV 769

Query: 63  EITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T+ I+      E + IP+IA+TA+AM GD E+    G + YISKP   +     ++K 
Sbjct: 770 AATRLIRTAVPLGEKRAIPIIAMTAYAMSGDREKFLACGMDEYISKPFEHTDLRAVVEKA 829

Query: 120 IGE 122
           +  
Sbjct: 830 LAR 832


>gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 226

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED +        ++   G+       G  ALE   +H  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+  S    +PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQIRAKS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
 gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
          Length = 232

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++VED+E    +  + +   G+      NG EAL+       D++I+DI + +++
Sbjct: 3   MQKHILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMIPKLN 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K I+E + L   P+I ++A     D+      G + YI+KP S+  F   +K  I
Sbjct: 63  GLEVLKVIREQAAL---PIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVI 119

Query: 121 GEA 123
             A
Sbjct: 120 RRA 122


>gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42]
 gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42]
          Length = 231

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED+     L  + +  SGY  L  ++G  AL+L      D++I+DI +  IS
Sbjct: 1   MTHRILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLVNDSL-DLVILDIMMPGIS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  + I++      +P++ +TA +   D+      G + Y++KP S       +   +
Sbjct: 60  GIETCQHIRK---TSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|124006366|ref|ZP_01691200.1| response Regulator Receiver Signal Transduction Histidine Kinase
           [Microscilla marina ATCC 23134]
 gi|123988023|gb|EAY27694.1| response Regulator Receiver Signal Transduction Histidine Kinase
           [Microscilla marina ATCC 23134]
          Length = 382

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 61/120 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D   N+ +    +   GY  L   +G  A+E     KPD+I+MDI +  ++
Sbjct: 9   MKGKILIVDDTPANIGVILSYLRDQGYKMLVAEDGESAIEQVGFMKPDLILMDIMMPGLN 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E    +K + E  +IP+I ++A     D+ +  + G   YI+KP      +  IK ++
Sbjct: 69  GFETCTSLKANKETADIPIIFMSALNETVDKVKGFQLGAVDYITKPFQQEEVLARIKTHL 128


>gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alistipes shahii WAL
           8301]
          Length = 223

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D    ++  R  +   GY      NG EAL++A + +P +I++D+ +  + 
Sbjct: 1   MSHRILLVDDEVDILEFVRYNLVREGYEVFTAENGAEALKVAAECRPHLILLDMMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  + I+ +  L++  V+ ++A   +G +      G + Y++KPI + + +  ++  +
Sbjct: 61  GAQTCRAIRRNPVLKDTMVVFLSALGEEGQQLAGFDVGADDYLTKPIKMKLLVSRVQAIL 120

Query: 121 GE 122
             
Sbjct: 121 KR 122


>gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1100

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VED  +N      L+E  G+  +   +G +ALE  R    D+++MDIQ+  + G+  
Sbjct: 976  VLLVEDEPVNRISVLRLLEKLGHAVVTAEDGFQALERVRSGTFDIVLMDIQMPGMDGMAA 1035

Query: 65   TKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ I++D  L     +P+IA+TA AMKGD E+    G + Y++KP+  +  +  +   + 
Sbjct: 1036 TRLIRDDDSLGNKALVPIIALTAHAMKGDREKFLDAGMDDYLAKPVDFTDLVRVLSGLVP 1095

Query: 122  EA 123
             A
Sbjct: 1096 RA 1097


>gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1375

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + +V++VED+E+++   + ++E SGY     ++G  A+        D+I+MD+Q+  + G
Sbjct: 1249 MHRVLLVEDDEISLHTVKRMLEKSGYAVSTAQDGQIAIGCLSDPDFDLILMDVQMPVLDG 1308

Query: 62   LEITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +E TK I+       +IP+IA+TA+AM GD+E+    G   YISKP+ ++   E I++ +
Sbjct: 1309 VEATKLIRASGASYADIPIIAMTAYAMTGDKEKFLAAGMNDYISKPVDMAALKEVIERVM 1368

Query: 121  GEA 123
             +A
Sbjct: 1369 EKA 1371


>gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 236

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED+    +L    +  +G+   +   G EA+    +H+PD++++D+ L +  G 
Sbjct: 12  ATLLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVMLPDFDGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+  S+    P++ +TA     D+ R    G + Y++KP SL   +  I+  +  
Sbjct: 72  EVARRIRSGSD--RTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRR 129

Query: 123 A 123
           +
Sbjct: 130 S 130


>gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + 
Sbjct: 1   MIPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
 gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
          Length = 228

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++V+IVED+E   +L +  + +  Y  +   NG +A +  + +K D+ I+D+ L  ++G
Sbjct: 1   MERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I K I+  + L+++PVI ++A   + D+      G + Y++KP S+      I+  + 
Sbjct: 61  YDILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLR 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|205372857|ref|ZP_03225666.1| DNA-binding response regulator [Bacillus coahuilensis m4-4]
          Length = 227

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D E    L    I+  GY  +   N   ALE  R+H+ D++++DI +    G
Sbjct: 1   MYRLLIIDDEEDMQHLIGLYIQNGGYETVFASNSESALEQMRRHEIDLVLLDIMMPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I  +    ++PVI ++A   + D+ +  K G + YI KP S    +  I+  + 
Sbjct: 61  FQVCEEICSE---YDVPVIFLSAKGEEWDKVKGLKLGADDYIVKPFSPGELLARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|42779728|ref|NP_976975.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217958170|ref|YP_002336714.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137383|ref|ZP_04265995.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|229194895|ref|ZP_04321678.1| Two-component response regulator [Bacillus cereus m1293]
 gi|42735645|gb|AAS39583.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217066134|gb|ACJ80384.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228588599|gb|EEK46634.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228646082|gb|EEL02304.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|324324624|gb|ADY19884.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q   D++++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIVLLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTIGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 260

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++V+D+     +    +  +G+      +G  AL  AR   PDV+++D+ L  + GL
Sbjct: 32  AHVLVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTPPDVVVLDLMLPGLGGL 91

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++ D +    P+I +TA   + D     + G + Y++KP S    +  +   +  
Sbjct: 92  EVCRALRADGDRP--PIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRR 149


>gi|291572094|dbj|BAI94366.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 378

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 63/120 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D+ +  +L +  ++  GY  +   NG E +E A++ +P ++I D  +  ++G
Sbjct: 1   MFKILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +Q+K   EL       +T+     D  +    G + ++SKPI ++     ++  + 
Sbjct: 61  IEVCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLR 120


>gi|198283275|ref|YP_002219596.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665852|ref|YP_002425862.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247796|gb|ACH83389.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518065|gb|ACK78651.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 243

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED E   +L R  ++ +G+      +   A  + +   P ++++D  L   +GL 
Sbjct: 9   RVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNGLA 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             + ++   E +++P+I +TA   +GD     + G + Y++KP S    +  +   +  +
Sbjct: 69  WCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLRRS 128


>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
 gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
          Length = 1629

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++I EDN +N KL   ++E  GY A    NG E +E  +    D+I+MD+Q+ E+ GL 
Sbjct: 1346 RILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEALKSKTYDLILMDVQMPEMDGLT 1405

Query: 64   ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T+ I ++   L+   +IA+TA AMKGD E   + G + Y+SKP+      + + K+
Sbjct: 1406 ATRYICQNWPRLERPFIIAMTANAMKGDREACLEAGMDDYLSKPVRFDDLQKALDKW 1462



 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            K  +IV+DN  N ++      T G  +    +G  ALEL       DV I+D  + E+ G
Sbjct: 1200 KHALIVDDNATNRRILSLQSATWGMSSHTVGSGKNALELIHSGMHFDVGILDFHMPEMDG 1259

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            L +  ++++  + Q++P++ +T+   +         G  A+++KPI  S   + +
Sbjct: 1260 LMLAMELRKLPQTQDLPLVMLTSAGNRETVSETVGVGFSAFLNKPIKQSQLYDVL 1314


>gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 232

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           + KV+I+ED E         ++ +G+  L+T NG EAL L +     D+ ++D+ +  I 
Sbjct: 1   MSKVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+E +E   I +I +TA   + D+      G + ++SKP S +  +  ++  +
Sbjct: 61  GFEVCRRIRETNE--RIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1767

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 77/119 (64%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLEQQSFDLVLMDCQMPVMDGY 1483

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T+ +++  EL E+PV+A+TA AM GD+E   + G   +I+KPI +++  +T+ KY+G
Sbjct: 1484 QATQALRKRPELTELPVVAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLG 1542



 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ +DN     + R  +E+ G+     R+G EA+    Q +  V ++D ++  + G+E 
Sbjct: 1284 ILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCIQQEYAVALIDWKMPNLDGIET 1343

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             KQIK+ ++ +   ++ V+A A +    +I + G   YISKPIS S  ++ I   +G A
Sbjct: 1344 AKQIKQQAK-KAPRILMVSAHANQDFLSQIEELGLAGYISKPISASRLLDGIINSLGRA 1401


>gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 225

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R  KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +PV+ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|255263715|ref|ZP_05343057.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Thalassiobium sp. R2A62]
 gi|255106050|gb|EET48724.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Thalassiobium sp. R2A62]
          Length = 149

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I +D+     + R  +E + +  ++  +G  AL+   +H PD+I++DI + E+ G
Sbjct: 1   MSRILIADDDATIRDVLRIALEQAHHDVVEVADGAAALDAVSEHAPDLIVLDIGMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++++        PV+ +TA + + D     + G + Y++KP S    +  IK  + 
Sbjct: 61  LQVCQELR---RTHATPVLFLTARSDEIDRIVGLELGADDYVTKPFSPREVVARIKAILK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|182412958|ref|YP_001818024.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177840172|gb|ACB74424.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1896

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +K+++V+D+  N+     ++E      +   NG +A+EL + H +   ++MDI + E+ G
Sbjct: 1776 RKILVVDDDARNIFALTTMLENYEMEVISAMNGRQAIELLQSHGEIGAVLMDIMMPEMDG 1835

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I++D     +P++A+TA AMKGD ++    G   YI+KP++ +  +  ++ ++
Sbjct: 1836 YETMREIRKDPRFSTLPILALTAKAMKGDRDKCLAAGASDYIAKPVNTNELLSLLRVWL 1894



 Score = 99.0 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++IVEDN +       L+       +    G EALE       D  ++D++L ++SG 
Sbjct: 1630 KRLLIVEDNAIERDSIVQLLAHDDIEIVTAGTGAEALEQLLDRPVDCCVLDLRLPDMSGF 1689

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+  +++ +  L+E+PV+  T   +  +EE   K   ++ + K + S     +
Sbjct: 1690 ELLDRVQREPALREVPVVVFTGKDLSTEEEHRLKTVAKSVLVKDVQSPERLFD 1742



 Score = 80.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVED+    ++   L    G+  +    G  AL LARQH+P  I +D+ L ++ G  
Sbjct: 1509 TLLIVEDDPHYARVLLGLARERGFKGIVATRGAAALALARQHQPTAITLDVLLPDMLGWT 1568

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKYI 120
            +   +K D   + IPV  ++   ++ +       G  AY  KP +        + IK+Y+
Sbjct: 1569 VLNNLKLDPATRHIPVQIIS---VEEERSHALAHGAFAYTVKPTTTEGLQQCFDRIKRYV 1625


>gi|170738018|ref|YP_001779278.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169820206|gb|ACA94788.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 312

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+    D ++  GY+ +   +G +AL+   +  PDV+++D  + ++ G E 
Sbjct: 2   ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +IK+D   + +PVI +TA        R  + G   Y++KP+        I  ++  +
Sbjct: 62  CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120


>gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 229

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|237726665|ref|ZP_04557146.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435191|gb|EEO45268.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1441

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++V+DNE        ++    Y  ++  NG + LE+ R   PD+++ D+ +  + G+E
Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLELPDLVLSDVMMPCMDGIE 1233

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K++ +   IP + ++A +   D  R  + G + YI+KP S       I   +
Sbjct: 1234 LLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLL 1290


>gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 227

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 56/122 (45%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D     +  +  +E SG+      N     EL +Q  PD++I DI + E+ 
Sbjct: 1   MTGHLLLVDDEPGLREAVQAYLEDSGFTVDVASNAKAGWELLQQRIPDLVISDIMMPEVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   Q++ED     +P++ +TA  M  D       G +AY+SKP      +  +   +
Sbjct: 61  GYQFLAQLREDPRFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLL 120

Query: 121 GE 122
             
Sbjct: 121 TR 122


>gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1989

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV++V+D+  N+     L+E      +   NG   +   +     D+++MD+ +  + G
Sbjct: 1870 KKVLVVDDDVRNIFALTSLLERHRMQVIPAENGAAGIAYLQNTPDIDLVLMDVMMPGMDG 1929

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  K I++  +   +P+IA+TA AMKGD ++    G   YI+KP+     +  ++ ++
Sbjct: 1930 YETMKTIRKIPQFHSLPIIALTAKAMKGDRDKCLDAGASDYITKPVDTEQLLSILRVWL 1988



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++I+ED+    +L  +++   G+  L        L + ++H P  +I+DI L   SG 
Sbjct: 1598 RTIVILEDDINFARLLLEVVREQGFKGLIAMRCSSGLAMIQKHHPCAVILDICLPGDSGW 1657

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119
             +  +IK D   + IP I ++         R +K G   Y  KP+      + I   K++
Sbjct: 1658 TVLDRIKHDPYSRHIPAIIMSVKDE---RYRGQKLGAYRYYQKPMIKEKLTQIIVDLKQF 1714

Query: 120  IGE 122
            I  
Sbjct: 1715 IER 1717



 Score = 37.0 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 11   NELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLEITKQI 68
            +E  +   RD+I +S             +E     Q K D +++D +L  +  L + ++ 
Sbjct: 1728 DEGLLTDLRDIIGSSDVRIDTANTIAAGIERISNTQDKIDCVVLDAKLPAMDNLAVFEEQ 1787

Query: 69   KEDSELQEIPVIA 81
             +  + +E+P++ 
Sbjct: 1788 LQSLKNRELPIVI 1800


>gi|167950458|ref|ZP_02537532.1| Response regulator receiver [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 283

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MLKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M  K+  +I++D+    KL    +  SG       +G   + +A+Q +PD+I++D+++  
Sbjct: 1   MSDKINVLIIDDDRFVQKLISKTLAASGLSTRTADDGESGIAIAQQEQPDLILLDVEMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I+G E+  +++   E Q+IPV+ +++     +  +  + G + Y+ KP      +  I  
Sbjct: 61  INGYEVCDRLRSLPETQDIPVVFLSSHGTLRERLQGYEVGADDYLVKPFEAEHLLARINV 120

Query: 119 YIG 121
            + 
Sbjct: 121 LMR 123


>gi|30260742|ref|NP_843119.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525860|ref|YP_017209.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183580|ref|YP_026832.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170708227|ref|ZP_02898673.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229603745|ref|YP_002865187.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|30254191|gb|AAP24605.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501008|gb|AAT29684.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177507|gb|AAT52883.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170126883|gb|EDS95764.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229268153|gb|ACQ49790.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|325273777|ref|ZP_08139968.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324101090|gb|EGB98745.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 210

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++   +L +  +  SG+      +G            D++I+D+ L +  G 
Sbjct: 6   KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGAGFRRALDSSPCDLVILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + +++      +P+I +TA + + D     + G + Y+ KP S       +K  +  
Sbjct: 66  SLCRWVRQHPRRARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARLKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|281209484|gb|EFA83652.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1067

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 5/121 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++V+DN +N ++   ++++ G       +GMEAL+   +   D+I +DI +  + G +
Sbjct: 936  RVLVVDDNMVNRQVAYKMLQSMGCNVDVVSSGMEALDRIEKVTYDMIFLDIMMPGMDGFQ 995

Query: 64   ITKQIKEDS-----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +TK+I+E         + IP+IA+TA A K DE +    G + Y+SKPI ++ F   + K
Sbjct: 996  VTKEIRERELKRSNGTKHIPIIAMTANAFKEDEVKCINSGMDDYLSKPIKITEFRLLMSK 1055

Query: 119  Y 119
            +
Sbjct: 1056 W 1056



 Score = 36.6 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           +V+++E N          +         T +  +A+ +             II+D+    
Sbjct: 784 RVLLIERNANQRNFLTQQMGVWNIFLDSTDDVNDAIVMCEHAIAMLRPYSFIIIDLATVG 843

Query: 59  ISGLEITKQIKEDSELQE--IPVIAVTAFAM--KGDEERIRKGGCEAYISKPISLSIFME 114
              L + +++ E S+     + +I +    M     EE  RK G    ++KPI +S+ ++
Sbjct: 844 NDALLLAQKLTEQSKASGHMLQLILLVPLKMRSPQLEEEARKSGFGEIVTKPIRMSVLLD 903

Query: 115 TIKKY 119
           ++K  
Sbjct: 904 SLKSL 908


>gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3]
 gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3]
          Length = 231

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++++DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQIISTYEVDLMVLDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEMRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
 gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
          Length = 1611

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 67/116 (57%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDNELN  + ++L+  +G       NG EA+    + + DV++MD+Q+  + G   
Sbjct: 1272 VLLVEDNELNQIVAQELLRDAGMHVDVASNGQEAIACIDRRRYDVVLMDMQMPVMDGETA 1331

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+Q++ D     +P+IA+TA AM+ D ER    G   ++ KPI   +   T+ +++
Sbjct: 1332 TRQLRADPRHAGLPIIAMTANAMQADRERCFAAGMNDHVPKPIDPDVLWATLVRWL 1387



 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 68/126 (53%), Gaps = 7/126 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
            +V++V+DN    ++  D+++T G  A Q  +G++AL+  R     Q    ++++D  +  
Sbjct: 1125 RVLVVDDNHTAAQVLVDMLQTMGLQATQVHSGVQALQALRDAVAEQRPYGLLLLDWHMPG 1184

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G+E+ ++I+    L  IP ++ VTA       +  R  G +  + KP+S S+  +T+ 
Sbjct: 1185 MDGIELARRIRGLG-LAHIPQMLMVTAHGRDEVMDAARSAGIDNVLVKPVSASVLFDTLM 1243

Query: 118  KYIGEA 123
            + + +A
Sbjct: 1244 QPLAQA 1249


>gi|218670388|ref|ZP_03520059.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli GR56]
          Length = 231

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D      +    +E  G  +   R G EA+   R+   D+II+DI + ++ 
Sbjct: 1   MAPRILVVDDEPHIRDVICFALERGGLTSTAVRGGTEAMAAFRRGNIDLIILDIGMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +QI++      +P++ ++A   + D     + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCRQIRQ---TSALPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 233

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G 
Sbjct: 6   KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I  
Sbjct: 66  EICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 122


>gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED      L +D +E SG+      +G   L  A     D+ I+D+ L  I G
Sbjct: 1   MSRILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+E    +  P++ V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICKQIREK---KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB]
 gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 243

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L    +   G+      +G +  +L  +    +I++D+ +    GL 
Sbjct: 9   HILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQMDKLRSREHYHLIVLDLMMPGEDGLT 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++   +  + P+I +TA   + D     + G + Y+ KP +    +  I   +  
Sbjct: 69  ICRRLRGQGD--QTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRR 125


>gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
 gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
          Length = 229

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I +DN+  + +  +  + + +      +G  AL+   +++ D+I++D+ + +  G
Sbjct: 1   MYKVLIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVMMPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +Q++       +P+I +TA     ++    + G + YI KP S    +  I   + 
Sbjct: 61  FDVCRQVR---TFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   GY      NG +AL    ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI++      +PVI V+A   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQIRQ---TSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
 gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
          Length = 221

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   +++VED++   +L +  + T  Y  +   +G+E +    +   D++++D+ +  +
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPNL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G E+ K I+  S    IP+I +TA   + D+ +    G + YI+KP S  + +  ++  
Sbjct: 61  NGFEVAKMIRSQS---NIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|330967661|gb|EGH67921.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            actinidiae str. M302091]
          Length = 1170

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATTEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED++L       LI              +AL+L R H  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDDLQRDSIARLIGDDDIEITAVGFAQQALDLLRDHIYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 230

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +L    +   G+ A+Q  +   AL    +  PD+I++D  L   SG+E+
Sbjct: 6   ILLVEDEPAIQELLAFNVAQCGFRAIQAYDVPSALVEINRALPDLILLDWMLPGTSGVEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+  ++IP+I +TA   + D+    + G + YI+KP S    M  I+  +  
Sbjct: 66  ARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIRAVLRR 123


>gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1322

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 62/117 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+DN +N+ +   ++   GY      +G  AL+      PD+I++DI + +++G E+
Sbjct: 13  ILVVDDNPVNLVILSKVLSKYGYKVRSAPDGEMALKSVEAKLPDLILLDIMMSDMNGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             ++K + + ++IPVI ++A     D+ +    G   YI+KP      +  ++  + 
Sbjct: 73  CNRLKTNEKTRDIPVIFISALEEPLDKVKAFTLGGADYIAKPFQTQEVIARVENQLR 129



 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++IVE+   + +   +L+   G+      NG E +EL ++ +P +I MDIQ+  ++G E
Sbjct: 1104 RLLIVENQWESQQFLAELLVPLGFEVYTAENGQEGVELWQRCQPHLIFMDIQMPVMNGYE 1163

Query: 64   ITKQIKEDSE------LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             T++I+          LQ   +IA+TA A +     I   GC+ +I KP      +  + 
Sbjct: 1164 ATQKIRAMEMNNLTDILQPTKIIALTASAFEEQRTYILSIGCDDFICKPFREEFLLNKLA 1223

Query: 118  KYIG 121
            +++G
Sbjct: 1224 EHLG 1227


>gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+    +L    ++   Y     R+G EAL L ++ K D+I++D+ L +++
Sbjct: 1   MQKRILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLMLPKVN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+E     ++PV+ ++A     D+      G + YISKP S+      ++  I
Sbjct: 61  GMELLKHIRE---TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D +    L    +   G+   +  N  +A    +    D+ I+D+ L +++
Sbjct: 1   MQDKILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENLDLAILDVMLPDMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+E  +    PVI +TA     D+      G + YI+KP      +  +K  +
Sbjct: 61  GFELCQKIREKYQY---PVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|167645462|ref|YP_001683125.1| response regulator PleD [Caulobacter sp. K31]
 gi|167347892|gb|ABZ70627.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter sp. K31]
          Length = 454

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N++L    +    Y      +G  AL +A    PDVI++D+ +  + 
Sbjct: 1   MSARILVVDDIEANVRLLEAKLSAEYYQVSVAYDGPTALAMAADELPDVILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++KED   + IPV+ VTA   + D     + G   +++KPI   +    ++   
Sbjct: 61  GFTVCRKLKEDPTTRHIPVVLVTALDGRADRIAGLEAGASDFLTKPIDDVMLFARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+DNE   +     +    +  +   + ++A +++     D++I++   +   GL 
Sbjct: 155 RVLVVDDNERQAQRVAAELAVE-HRPVVESDPVKA-QISAGGPVDLVIINAAAKGFDGLR 212

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               ++ D   + +P++A+     +    +  + G    + +PI        +K  I  
Sbjct: 213 FAASLRSDERTRHLPILAMVDTDDRPRLVKALEIGINDILPRPIDPQELSARVKTQIQR 271


>gi|152986132|ref|YP_001349017.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150961290|gb|ABR83315.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 651

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 67/117 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  +   ++ + GY      +G++A+  A + + D I+MD +L  + G   
Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRHAERQQYDAILMDCRLPVLDGYAA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+     +++P+IA+TA A++GD E     G   Y++KP   +     ++++IG
Sbjct: 577 TREIRAQENGRQVPIIALTANALQGDRENCLHAGMNDYLAKPFKRAELQRILQRWIG 633


>gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 226

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED        +  +E  G+      +G EAL  A +   DVI++D+ L  ++G E
Sbjct: 2   RVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPVLNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E       P++ +TA   + DE      G + Y++KP S  I +  I+  +  
Sbjct: 62  VCRRLREREVW--TPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRR 118


>gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931]
 gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED E        L+   G+  +   NG++A+    +  PD++++D+ L  +SG
Sbjct: 1   MTKILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFEREDPDLVLLDVMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K+I+  S    +P+I +TA   + D+    + G + Y++KP S    M  I+  + 
Sbjct: 61  MEVCKKIRASS---SVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218131895|ref|ZP_03460699.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697]
 gi|217986198|gb|EEC52537.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697]
          Length = 1239

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN    +     +    +      +G +A E+  + +PD+++ D+ +  + G E
Sbjct: 995  HILIVEDNHALREFMVHPL-REHFRVTTADDGQQAWEMMNELQPDLVVSDVVMPRMDGFE 1053

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++IK   E   IPVI +TA + K ++    + G + Y++KP  +++    I   I 
Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIR 1111


>gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 248

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D     ++    +   GY      +G+EAL++     PD+II+D+ + ++ G  +
Sbjct: 15  ILVADDEVPIRRILGTRLSKIGYQVYTAADGVEALDVFYDQCPDLIILDVMMPKLDGYGV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++      +P+I +TA +   D     + G + Y+ KP S       ++  +  
Sbjct: 75  CQAVRK---TSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRR 129


>gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 225

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++  +   +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCKKMR--TSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 914

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 74/124 (59%), Gaps = 2/124 (1%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++VEDN +N ++   ++E +G+      +G+ ALE  ++   DV+ MDIQ+  +
Sbjct: 660 MGKARVLLVEDNLVNQRVAVRILEKAGHTVHVAGDGLVALEAVKKDNYDVVFMDIQMPGM 719

Query: 60  SGLEITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            G   T  I++      E+P+IA+TA AMKGD E+    G + YISKP+     ++ +++
Sbjct: 720 DGYAATATIRKMAPRFSELPIIAMTAHAMKGDREKCIASGMDDYISKPVKPKGLLKMVQR 779

Query: 119 YIGE 122
           + G+
Sbjct: 780 WAGK 783



 Score =  114 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
            V+IV+DN  N  +    + + G    +  +G EA+EL  Q        D +++D Q+ E
Sbjct: 510 HVLIVDDNATNRTILNKTLVSFGCFPEEAESGGEAMELLAQRMAEGRPFDAVLLDHQMPE 569

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G  + + I+     +   ++ +T+   +GD  R +  GC AY++KP+  S+ ++ + +
Sbjct: 570 MDGEAVVRAIRSKPGNENTRILILTSVGERGDARRFKDLGCCAYLNKPVRQSLLLDALAE 629

Query: 119 YI 120
            +
Sbjct: 630 TL 631


>gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7]
 gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7]
          Length = 233

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    + +    +    +   +  NG+EALE     +P++I++D+ L +ISG  
Sbjct: 2   KILIVDDEPKILDIVEAYLTIKRFQVFRASNGIEALEKFELVQPNLIVLDLMLPDISGTV 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++I++     ++P+I +TA + + D     + G + YI KP S    +  ++  +  +
Sbjct: 62  ICQKIRK---TSDVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVLRRS 118


>gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10]
 gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003]
 gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10]
 gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004]
 gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038]
 gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003]
 gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 235

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I EDN        +++   GY  +   NG++AL L RQ +PD II+DI + E+ G +
Sbjct: 2   KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGYK 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++     + P+I ++A   + D     + G + YISKP  +      IK  +  
Sbjct: 62  VCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRR 118


>gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 238

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E   +     +E  GY  +   +G++A+EL  +H  D++++D+ L  + G
Sbjct: 1   MTRILLVEDEESYREPLTYQLEREGYEVVAAADGLQAIELFEEHGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      ++PVI +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRRLR---LTSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ +D     ++    +   G+  L   NG EALEL R  +PD++++D+ + E+ G  
Sbjct: 14  KILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVMMPELDGFA 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+  SE   +P+I +TA     D     + G + Y+ KP S       I+  +  A
Sbjct: 74  VVERIRAQSE---VPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRA 130


>gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides
           fragilis 638R]
          Length = 224

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           ++  G+      +G    E  RQ   D++I+DI + +++G
Sbjct: 1   MAKILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQEAFDLLILDIIMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +  ++       PVI +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 61  LELCRLYRQQYGYL-TPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 225

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 61/118 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++++D+   + L +D +E  GY  +   NG EALE+     PD+II D+ + E+ G 
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEHEVPDMIICDVMMPEMDGY 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +Q++++     IPV+ ++A     D  +    G + Y+ KP      +  ++  +
Sbjct: 80  TFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 137


>gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED+    +     +   G+       G + +   R+  PD++++D+ L  I G E 
Sbjct: 4   VLVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKLRERAPDLVVLDLMLPGIDGFET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+   +   +P+I +TA +   D     + G + Y+ KPI   +    I+  +  
Sbjct: 64  CRRIRALGQ---VPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVLRR 118


>gi|254514188|ref|ZP_05126249.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
 gi|219676431|gb|EED32796.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
          Length = 236

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++V+D      + R  +E   Y  L+  N  +A  +    +PD++++D  L   SG+
Sbjct: 4   RTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLPGGSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D   +EIPVI +TA   + +  +  + G + Y++KP +    +  IK  +  
Sbjct: 64  ELLRRLKRDETTREIPVIMLTAKTAEDNVIQGLEVGADDYMTKPFAPRELIARIKALLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|153805826|ref|ZP_01958494.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185]
 gi|149130503|gb|EDM21709.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185]
          Length = 1376

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN   + + R+      Y  +   +G EAL+   +  PD+II D+ +  ++G+E
Sbjct: 1133 TILLVDDNHEILMILREYFVKD-YNIIMAIDGQEALDKCNRSLPDIIISDVMMPRMNGIE 1191

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +   +K++ +   IP+I +TA +   D+    + G +AYI KP +  +    ++  + ++
Sbjct: 1192 LCATLKKNLQTCFIPIILLTAKSQVEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLNKS 1251


>gi|289679969|ref|ZP_06500859.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae FF5]
          Length = 182

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 54  RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 113

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 114 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 171


>gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 1159

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+ + R L++  GY  L + +G +AL    Q   D+I++D+ +  +SG ++
Sbjct: 752 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPVDLILLDVMMPTLSGFDV 811

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---- 120
            +++++    +++PV+ +TA     D E     G   Y+ KP         ++  +    
Sbjct: 812 CRRLRQQHPKEKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVRALLEASA 871

Query: 121 GEA 123
           G A
Sbjct: 872 GRA 874


>gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1211

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +K++IV+D+  N+      +E+     L   NG + +E  + +   ++++MDI + E+ G
Sbjct: 1091 RKILIVDDDLRNIFALTSFLESYQMQVLFAENGRDGIERLQTNPDINIVLMDIMMPEMDG 1150

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T+ I++  + + +P+IA+TA AM GD E+  + G   YI+KP+     +  ++ ++
Sbjct: 1151 YETTRAIRQQQQFRSLPIIALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWL 1209



 Score =  110 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 4   KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++ I+ED+E   ++  D+    G+ A+      + L LA+Q KPD I++DI + E+ G 
Sbjct: 823 RILLIIEDDEKFARILLDMAREQGFKAIVALQSKQGLALAQQFKPDAIMLDIYMPEMDGW 882

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +  ++K   + + IPV  ++   +   ++R  + G   Y+ KP+S     + +
Sbjct: 883 TVLDRLKHKPDTRHIPVHILS---VDERQQRGLQLGAITYLQKPVSPEALTQVL 933



 Score = 83.6 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++IVED+ +  +   +LI      +     G EAL + R    D +++D+ L ++SG 
Sbjct: 945  RNLLIVEDDPVQAQSIIELIGNGDVQSTAVGTGAEALLILRSQHFDCMVLDLGLPDMSGF 1004

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
             + +QIK++  L ++P+I  T   +   EE   +G  E  I K + S    ++
Sbjct: 1005 ALIEQIKQEPRLLKLPIIVYTGKELSRQEETQLRGLAETIIIKNVRSPERLLD 1057


>gi|317474497|ref|ZP_07933771.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316909178|gb|EFV30858.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1239

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN    +     +    +      +G +A E+  + +PD+++ D+ +  + G E
Sbjct: 995  HILIVEDNHALREFMVHPL-REHFRVTTADDGQQAWEMMNELQPDLVVSDVVMPRMDGFE 1053

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++IK   E   IPVI +TA + K ++    + G + Y++KP  +++    I   I 
Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIR 1111


>gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 220

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA +     +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++  +   +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCKKMR--TSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC
           35316]
          Length = 235

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED+     L R  +E  GY      +G  AL L  +   D +I+D+ L  + G
Sbjct: 1   MKQILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLMLPSVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++    + +PVI ++A + + D     + G + Y++KP S+   +  IK    
Sbjct: 61  LEICRRIRQM--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|220909969|ref|YP_002485280.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
 gi|219866580|gb|ACL46919.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
          Length = 1002

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN         L+ +  +      NG  ALE  +Q  PD+++ D+ + E+ G +
Sbjct: 647 RILLVDDNADMRDYVGRLL-SERWQVETAANGAIALERLQQDLPDLVLTDVMMPEMDGFQ 705

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + ++ D   Q IPVI ++A A +         G + Y+ KP S    +  ++  +
Sbjct: 706 LLQVLRSDPLTQSIPVILLSARAGEVATIAGLAAGADDYLIKPFSARELIARVETQL 762


>gi|320332983|ref|YP_004169694.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754272|gb|ADV66029.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 249

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED+    +     +   G+       G E L    +H  D++++D+ L    G  
Sbjct: 31  RILIVEDDPGIREYLSLGLRYEGFDVRSAATGGEGLTQYAEHGADLVVLDVMLPGPDGFA 90

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             + ++       +PV+ +TA     D     + G + Y++KP +    +  I+  +  A
Sbjct: 91  FLRDLRARDA---VPVVMLTARDSVDDRILGLESGADDYLTKPFAFGELVARIRTVLRRA 147


>gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 232

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + 
Sbjct: 3   MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  +
Sbjct: 63  GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 232

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G 
Sbjct: 5   KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I  
Sbjct: 65  EICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 121


>gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
 gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
          Length = 229

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED      L +D +E SG+      +G   L  A     D+ I+D+ L  I G
Sbjct: 1   MSRILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+I+E    +  P++ V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICKRIREK---KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I +D +    L +  +E   Y      +G  AL L  ++K D+ I+D+ + +I G+E
Sbjct: 11  RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGIE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E +    +P++ +TA   + D+      G + YI+KP S++  +  +K  +  
Sbjct: 71  VCRKLREKT---NVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126


>gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I+ED++L  +L RD +E SG+      NG + L  A   + D+I++D+ L    G
Sbjct: 1   MRKILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFALNREFDLILLDLMLPSKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+I+ +   +EIP++ VTA     D+ +    G + YI KP   S  +  +  ++ 
Sbjct: 61  FQLCKEIRSN---KEIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHLS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IVED+E    + +  ++   +   +  NG +A E+    KPD++I+D+ L +I+G
Sbjct: 1   MEKILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLMLPDING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I K I+   +    P+I +TA     D+      G + YI+KP +    M  +K  + 
Sbjct: 61  LNICKSIRTKYKY---PIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121]
          Length = 219

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED +   +     +    Y      +G   L+ A     D+II+D+ L  I+G
Sbjct: 1   MTNILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLMLPNING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +QI++    Q  P+I +TA +   D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LEICRQIRQQ---QTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330875680|gb|EGH09829.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 641

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VEDN +N  + + ++    Y      +G EA+  A      +I+MD +L  + G 
Sbjct: 513 RKILLVEDNPVNRTVVQAMLHHMDYEVDVAVDGAEAVVKAGTGHYALILMDCRLPVMDGY 572

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
           E T++I++ S L  IP+IA+TA A++GD +   + G + Y++KP   +   + + +++  
Sbjct: 573 EATRRIRQLSGLDRIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQKVLLRWLAF 632

Query: 122 EA 123
            A
Sbjct: 633 RA 634


>gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
 gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+    ++    +    +  ++  +G +AL    +   D++++D+ L  I G
Sbjct: 1   MARVLVVDDDLTVREVLASYLRAGSHDVVEAGDGEQALRAMSERPADIVVLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++  E   +P+I +TA   + D     + G + Y+ KP S    +  +   + 
Sbjct: 61  LEVCRRLRQAGE---VPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|323138821|ref|ZP_08073885.1| response regulator receiver modulated diguanylate cyclase
           [Methylocystis sp. ATCC 49242]
 gi|322395969|gb|EFX98506.1| response regulator receiver modulated diguanylate cyclase
           [Methylocystis sp. ATCC 49242]
          Length = 457

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D   N+KL    +    +  +   NG EALEL R  + D++++D+ +  + 
Sbjct: 1   MTARVLIVDDLLPNIKLLEARLSAEYFDVVTATNGPEALELCRDGRCDIVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+  ++K D+    +PV+ VTA     D  R  + G + +++KP+     +  ++   
Sbjct: 61  GFEVCTRLKADAATMHLPVVMVTALDQPADRVRGLECGADDFLTKPVDELALIARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED   +       +    +      +  EAL  A ++  +++I+ + L +   L 
Sbjct: 157 RILLVEDRAGSSDRIVAALRDL-HDVEIEPHPQEALFRAAENGYELVIVSLNLTDFDALR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  Q++     + IP++ +   A   D     R    G   YI +PI  +  +  ++  +
Sbjct: 216 LCSQLRSLERTRSIPILLL---ADLEDRPRILRGLDLGVNDYIVRPIDRNELVARVRTQL 272

Query: 121 GE 122
             
Sbjct: 273 RR 274


>gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 69/125 (55%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y  L+ R+G EAL L  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++      +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLL 117

Query: 121 --GEA 123
              +A
Sbjct: 118 ESRQA 122


>gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 283

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED      L R  +   GY      +G +A+  A +   D I++D+ L  + G E
Sbjct: 31  RVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGFE 90

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E       PV+ +TA     D  R    G + Y+ KP S       ++  +  
Sbjct: 91  VCRRLREAGRWA--PVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 147


>gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649]
 gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649]
          Length = 226

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED          L+   GY      NG +AL        D++++D+ L  +SG
Sbjct: 1   MTRILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGADLVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ + +++ S    +PVI +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  VDVCRALRQRS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 223

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   G+  ++  NG EA++L   Q    +II+D+ + ++ G 
Sbjct: 5   KILVVDDEARMRKLVKDFLSVKGFSVVEASNGEEAVDLFFEQKDIVLIILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  K I++     ++P+I +TA + + DE +    G + YISKP S  I +  ++  +  
Sbjct: 65  ETCKTIRK---YSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51]
 gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 263

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 63/107 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D E   +L R  +E  GY  L   +G EAL +  + +P+++++DI L  ISGLE+
Sbjct: 40  ILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILEEKQPELVVLDIMLPGISGLEV 99

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
             QI++  +  E+PVI +TA   + D+    + G + YI+KP S   
Sbjct: 100 LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 146


>gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 232

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQMLSMYEIDLMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +Q++E +    +P++ ++A A   D+      G + Y+ KP +    M  +K  +
Sbjct: 61  GLEVCQQVREHNNT--VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
 gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
          Length = 231

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   G+   +  NG E LEL   +  D+I++D+ + +++G
Sbjct: 1   MPHILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELL-SNDIDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E+ E    PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
 gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
          Length = 227

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN   +    D +E  GY     ++G+  L LA   + D+I++DI L  I G +
Sbjct: 2   RILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQYDLIVLDIMLPGIDGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D    E P+I +TA     D  +    G + Y+ KP +LS  +  I+  +  
Sbjct: 62  VCERLRRD-AGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRR 119


>gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
 gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D+    +L    ++  G+      +G EAL+L R HK D+ ++D+ L + S
Sbjct: 1   MNEKILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEALKLIRDHKFDLAVLDVMLPDCS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+        PVI +TA     D+      G + YI+KP +       +K  +
Sbjct: 61  GFHLCEEIRSHYNY---PVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|116623387|ref|YP_825543.1| response regulator receiver protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226549|gb|ABJ85258.1| response regulator receiver protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 125

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 73/122 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VEDNE+N  +    +   G+      +G   ++ A   KPD+++MD+ L  + G
Sbjct: 1   MAKVLLVEDNEMNRDMLSRRLMRQGFEVTVAVDGQAGVDAAHSGKPDIVLMDMSLPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+Q+K +   + IPVIA+TA AM GD ++    GC+ Y +KPI L   +E +++ +G
Sbjct: 61  WEATRQLKANDATRAIPVIALTAHAMAGDRQQALDAGCDDYDTKPIELPRLLEKMRRLLG 120

Query: 122 EA 123
           EA
Sbjct: 121 EA 122


>gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378]
          Length = 225

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+E  ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCKKLR--ISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 221

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     +  ++++ SGY+     +G+ A+E+ R+   D+II+D+ L +I 
Sbjct: 1   MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S    +P+I +TA   + DE +  +   + YI+KP S+++ ++ ++  +
Sbjct: 61  GFVVCEIIRKES---SMPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IVED +    L R  +E  G+  +Q R+G++AL LAR  +PD+II+D+ L  I GL
Sbjct: 4   RTLLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSEQPDLIILDLMLPGIDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+  +++      +  V+ +TA A + D     + G + Y++KP S    +  ++     
Sbjct: 64  EVCHRLR---TFSDAYVLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRR 120


>gi|300864101|ref|ZP_07109000.1| Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
 gi|300337917|emb|CBN54146.1| Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
          Length = 315

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 67/116 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++E  GY      +G +ALE  +   PD+I++D  +  ++GLE+
Sbjct: 11  ILVVDDVTENLQLIALILEKRGYETTFATSGKQALERVQTANPDLILLDFMMPHMNGLEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K + ++ EIP+I +TA   +    +  + G   YI+KP S +  +  ++ ++
Sbjct: 71  CEQLKANPDVAEIPIIFLTASHEQEHLIQAFEKGAVDYITKPFSTAELLVRVRTHL 126


>gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K   
Sbjct: 60  GYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1]
 gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1]
          Length = 234

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G +
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 73  VCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128


>gi|111224670|ref|YP_715464.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111152202|emb|CAJ63932.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Frankia alni ACN14a]
          Length = 259

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED    ++  R  + + G+      +G  AL  A  H PD++++D+ L ++ G++
Sbjct: 18  RILIVEDEPQLLRAMRINLHSRGHEVRTAVDGAHALREAASHPPDLVVLDLGLPDLDGID 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++       +P+I ++      D+      G + Y++KP S+   +  I+     A
Sbjct: 78  VIRGLR---GWTRVPIIVLSGRTSGHDKIAALDAGADDYVTKPFSVEELLARIRAVTRRA 134


>gi|91977507|ref|YP_570166.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91683963|gb|ABE40265.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 121

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 80/121 (66%), Positives = 102/121 (84%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T NG EAL+L R+  PD+I+MDIQL ++S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYQTAGTSNGYEALDLVRKLHPDLILMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET++++I
Sbjct: 61  GLDVTRWIKDDPELRHIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4]
          Length = 234

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
           K+++VEDNE    +        G+      +G E   L   +    D I++D  L  + G
Sbjct: 2   KILVVEDNESVCSMIEMFFLKEGWEGAFATDGKEGWALFESNPTGYDFILLDWMLPGMDG 61

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + ++I+     + +PVI +TA     D+    + G + Y++KP S    M  IK    
Sbjct: 62  ITLCRKIR--GVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAVRR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|167839921|ref|ZP_02466605.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Burkholderia thailandensis
           MSMB43]
          Length = 709

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++V+D   N++L    +E  G   L  ++G EA+  A+   PD++++D+ +  I G 
Sbjct: 13  QTVLVVDDTPANLELAVSALEADGLEVLVAQSGEEAIRRAQLVVPDLVLLDVMMPGIDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
           E  +++K     ++ PVI +TA +   D+      G   Y++KP  +      +K ++  
Sbjct: 73  ETCRRLKAIDHTRDAPVIFMTALSDVQDKVAGFAAGGIDYLTKPFQIVELAARVKTHLAL 132

Query: 122 EA 123
            A
Sbjct: 133 RA 134


>gi|119492435|ref|ZP_01623756.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC
           8106]
 gi|119453101|gb|EAW34270.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC
           8106]
          Length = 377

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L  + +   GY      NG  AL   +   PD+I++DI++  + G E+
Sbjct: 13  ILIVDDLPDNLRLLSETLSDRGYEVQCAINGKLALMAVQNAPPDLILLDIKMPGLDGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K       IPVI ++A     D+ +  + G   YI+KP  +   +  ++  +
Sbjct: 73  CAELKSQVSTSNIPVIFLSALDDVFDKVKAFRVGGVDYITKPFQVEEVLARVENQL 128


>gi|118476273|ref|YP_893424.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415498|gb|ABK83917.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 227

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q   D+I++D+ +  + G
Sbjct: 5   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 65  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|17228133|ref|NP_484681.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17129983|dbj|BAB72595.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 438

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 57/116 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+++  + +  +G+      +G  AL+   +  PD+I++D+ +  I G E 
Sbjct: 26  VLIVDDTPTNLEVVSETLGDAGFDVAIATSGDRALQQVERRLPDLILLDVMMPGIDGFET 85

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +     IP+I +TA      + +  + G   YI KP      +  +  ++
Sbjct: 86  CRRLKANDRTCHIPIIFMTALCDSESKVKALELGAVDYIVKPFYEKEVLARVSTHL 141


>gi|114319830|ref|YP_741513.1| response regulator receiver protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226224|gb|ABI56023.1| response regulator receiver protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 123

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D    +     L++ +GY      +G EALE   + KPD++++D+ +   +
Sbjct: 1   MPKRILIVDDEANIVLSLEFLMKQAGYEVETATDGDEALEAIERAKPDLVLLDVMMPRKN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+   + ++I V+ +TA     + E+    G + YI+KP S    ++ +++ +
Sbjct: 61  GYEVCETIRASDDWKDILVVMLTAKGRDVEREKGLSLGADDYITKPFSTQEVIDKVRELL 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL
           J1-208]
          Length = 225

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|218780205|ref|YP_002431523.1| response regulator receiver protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761589|gb|ACL04055.1| Protein with response regulator receiver domain [Desulfatibacillum
           alkenivorans AK-01]
          Length = 305

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 63/118 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D  +  +L  + ++ S Y     ++G + LE+ +QH+PD++++DIQ+  + G   
Sbjct: 6   ILITDDEPMQRELLEEYLKLSHYRVTHAKDGNQCLEMMQQHEPDLVLLDIQMPGMDGFAT 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             QI++   + + PV+ +++   +  + +  + G + YI+KP      +  +K  +  
Sbjct: 66  LTQIRKIPAIADTPVLFLSSLDRQHLKVKGLELGADDYITKPFHPPELLARVKASLRR 123


>gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 233

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++++ED     +L RD +E + +      +G   L++A Q   D+II+DI L +++G 
Sbjct: 6   KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I  
Sbjct: 66  EICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 122


>gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9605]
 gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9605]
          Length = 245

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E    A+Q  PDV+I D+ +  + G  
Sbjct: 20  RLLLVDDEPGLRAAVQAYLEDEGFEVTTAVDGEEGFAKAQQMLPDVVISDVMMPRLDGYG 79

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + ++++ D  L   PVI +TA  M  D  +    G + YI KP      +  ++  
Sbjct: 80  LLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 135


>gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|330875153|gb|EGH09302.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            morsprunorum str. M302280PT]
          Length = 1170

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLDEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATTEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED++L       LI              +AL+L R H  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDDLQRDSIARLIGDDDIEITAVGFAQQALDLLRDHIYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 217

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E   K+ +  +E  G+   +  +G EA+E  +     V+I+D+ L +  G  
Sbjct: 2   KILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++     + PVI +TA     D+    + G + Y+ KP+S    +  +K  +  
Sbjct: 62  VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117


>gi|228937822|ref|ZP_04100452.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228951077|ref|ZP_04113195.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228970703|ref|ZP_04131345.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977280|ref|ZP_04137676.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229068272|ref|ZP_04201575.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077897|ref|ZP_04210508.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229148925|ref|ZP_04277170.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634465|gb|EEK91049.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228705415|gb|EEL57790.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714733|gb|EEL66605.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228782419|gb|EEM30601.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789005|gb|EEM36942.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228808594|gb|EEM55095.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228821857|gb|EEM67855.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938303|gb|AEA14199.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q + D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M++K  ++IV+D+    K+    ++  GY  +   + +EALE  R    D+II+DI L +
Sbjct: 1   MMQKEKILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G+E   +I+E     ++P+I ++A     D+ +    G E YI+KP +    M  IK 
Sbjct: 61  MDGIEACLKIREQ---YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKS 117

Query: 119 YIGE 122
            +  
Sbjct: 118 QLRR 121


>gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 235

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I EDN        +++   GY  +   NG++AL L RQ +PD II+DI + E+ G +
Sbjct: 2   KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGYK 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++     + P+I ++A   + D     + G + YISKP  +      IK  +  
Sbjct: 62  VCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRR 118


>gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262]
 gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262]
 gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023]
          Length = 225

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+E  ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCKKLR--ISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 224

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           ++  G+      +G    ++ +    D++I+DI + +I+G
Sbjct: 1   MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDKPFDLLILDIIMPKING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +  ++    Q IPVI +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 61  LELCRLYRQMFGYQ-IPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|269140794|ref|YP_003297495.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|267986455|gb|ACY86284.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|304560554|gb|ADM43218.1| Copper-sensing two-component system response regulator CpxR
           [Edwardsiella tarda FL6-60]
          Length = 232

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L++  G+  +   +G +AL +      D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDA-SIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 232

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + 
Sbjct: 3   MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  +
Sbjct: 63  GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +  ++L R+ +   G+  + + NG++AL++A   + D +++D+ L  + G E
Sbjct: 2   RILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + +++P++ +TA   + D  R    G + Y++KP S S  +  ++     
Sbjct: 62  VARRLRH--KGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRR 118


>gi|23016749|ref|ZP_00056502.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 242

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IV+D+     L    +   GY      +G    +       D++I+D+ L    G
Sbjct: 1   MTHVLIVDDDPEICALLTQFLTGQGYTVATAGDGDTMRQALVNEAADLVILDLMLPGEDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++       +P+I +TA   + D     + G + Y++KP S    +  I+  + 
Sbjct: 61  LSLCRHLRA---TTSLPIIMLTAMGSETDRVVGLEMGADDYLAKPFSTRELLARIRAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1]
 gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V++V+D     +L    ++   Y     ++G  ALE     +PD +++D+ L ++ 
Sbjct: 1   MMPRVLVVDDEPQLARLLVINLKARKYDVDCAQDGGTALETVATCRPDAVLLDLGLPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQ++      ++PV+ V+A     ++ +    G + YI+KP S+   M  +   I
Sbjct: 61  GIEVIKQLR---GWSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  V++ +D++         ++  GY  ++  +G+EAL+    ++  +II+DI +  +
Sbjct: 1   MTKLTVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLEALDKLENNEVHLIILDIMMPNM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+  T +I+ +   + IP+I ++A A  GD+      G + Y++KP      +  +K  
Sbjct: 61  DGITATFKIRAE---RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
 gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
          Length = 235

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED+    +L  D +E++GY      +G +AL   + +  D+I++D+ L   SG
Sbjct: 1   MSRILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHYDLILLDLMLPGCSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I ++I+++    +IP++ VTA     D  R    G + YI+KP   S  +  ++ ++ 
Sbjct: 61  YDICRKIRDEI---DIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|119493450|ref|ZP_01624119.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
 gi|119452694|gb|EAW33873.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
          Length = 215

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++M+V+D+   + L RD +E  GY      NG++ALEL     PD+II DI + E+ G 
Sbjct: 10  KQLMLVDDDPNLVLLVRDYLEFRGYEVSTAENGLKALELLELQLPDLIICDIMMPEMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K I+ED     IPV+ ++A  +  D+ +    G + YI KP      +  ++  + +
Sbjct: 70  SLVKVIREDPRTGWIPVLFLSAKGLSQDKVKGLNTGADVYIVKPFEPEELVAQVESSLRQ 129

Query: 123 A 123
           A
Sbjct: 130 A 130


>gi|186685534|ref|YP_001868730.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186467986|gb|ACC83787.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 439

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++I++D+  N+++  D ++ +GY  L   +G   +E  + + PD+I++D+ +  I G 
Sbjct: 8   QTILIIDDHPTNIEVLYDALDQAGYKVLVEMDGWHGIETVKSYPPDLILLDVMMPGIDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--I 120
           E  +Q+K      EIP+I +TA     D+ +    G   YI+KP      +  I  +  +
Sbjct: 68  ETCRQLKSQQTTCEIPIIFMTALNDTTDKVKGLGLGAVDYITKPFQQEEVLARIGIHLKL 127

Query: 121 GEA 123
             A
Sbjct: 128 RRA 130


>gi|294638284|ref|ZP_06716537.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
 gi|291088537|gb|EFE21098.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
          Length = 232

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L++  G+  +   +G +AL +      D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDA-SIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|260463924|ref|ZP_05812120.1| response regulator receiver protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030299|gb|EEW31579.1| response regulator receiver protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 138

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 95/123 (77%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKVMIVEDNELNMKLFRDLIE SGY  ++TRNG+EAL+LARQH+PD+I+MDIQL E+S
Sbjct: 16  MPKKVMIVEDNELNMKLFRDLIEASGYETVRTRNGLEALDLARQHRPDLILMDIQLPEVS 75

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED +L  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK Y+
Sbjct: 76  GLEVTKWLKEDDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 135

Query: 121 GEA 123
           G+A
Sbjct: 136 GDA 138


>gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268]
 gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268]
          Length = 228

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 65/119 (54%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED ++  K  + ++E + Y      +G EALE A+    D++I+D+ + +++G +
Sbjct: 2   RILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++++     +P++ +TA +   D     +GG + Y++KP      +  I   +  
Sbjct: 62  VARQLRKEKNG--LPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRR 118


>gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1145

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+ + R L++  GY  L + +G +AL    Q   D+I++D+ +  +SG ++
Sbjct: 738 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPVDLILLDVMMPTLSGFDV 797

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---- 120
            ++++E     ++PV+ +TA     D E     G   Y+ KP         +K  +    
Sbjct: 798 CRRLREQHPKDKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVKALLEASA 857

Query: 121 GEA 123
           G A
Sbjct: 858 GRA 860


>gi|119486748|ref|ZP_01620723.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119456041|gb|EAW37174.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 456

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ L   ++   GY   Q  +G  AL+   +  PD+I++DIQ+ E+ G   
Sbjct: 12  ILVVDDYLDNLTLLTIILNNLGYQVRQADSGKTALKAVEEKLPDLILLDIQMPEMDGYSC 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K + + ++IP+I ++AF    D+ +  + G E YI+KP  L   +  ++K +
Sbjct: 72  CQQLKANPKTKDIPIIFLSAFNNAVDKVKGFEVGGEDYITKPFLLEEVIARVEKQL 127


>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
          Length = 2062

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N +L   L+E  G+      NG++A+  ++  K D+I+MD+Q+    G E 
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQLRKFDLILMDVQMPHCGGFEA 1790

Query: 65   TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T QI++    Q    P+IA+TA A+  D  +  + G + YISKPI+       I+KY+
Sbjct: 1791 TAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYL 1848



 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEIS 60
            +IV+DN+  +K+ + ++   G  +  + N  +A  +           + I +D QL    
Sbjct: 1592 LIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTKPFEFIFVDAQL---- 1647

Query: 61   GLEITKQI-KEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            G  +   + +++    +  +I + +    +G  +         Y+SKP+S S   + + +
Sbjct: 1648 GTSLIDMMVEKNMNHCKTKIIMLISGGGQRGYPDSSSNF-ITGYLSKPVSPSEIFDILTR 1706


>gi|107026084|ref|YP_623595.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116692732|ref|YP_838265.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|105895458|gb|ABF78622.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
 gi|116650732|gb|ABK11372.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
          Length = 312

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+    D ++  GY+ +   +G +AL+   +  PDV+++D  + ++ G E 
Sbjct: 2   ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +IK+D   + +PVI +TA        R  + G   Y++KP+        I  ++  +
Sbjct: 62  CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120


>gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 222

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D     ++ R+  E +G+   +  NG+ A+E  +    D +I+D+ +  + G
Sbjct: 1   MAKILIVDDEANIREVVREYCEINGFETEEAENGLVAIEKVKNTHFDCVILDVMMPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               KQIK   +   +PVI ++A   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  FSTCKQIKSIDQ---VPVIMLSARQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVLE 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
 gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
          Length = 1382

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 57/116 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ +DN    +    L+ ++G+      +G  AL+ AR H PD+++ D+ +  + GL
Sbjct: 631 ARVLVADDNADMREYLTRLLRSAGHEVRAVADGRAALDAARAHTPDLVVSDVMMPRLDGL 690

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++   ++ D      PV+ ++A A +       + G + Y+ KP   +  +  ++ 
Sbjct: 691 QLVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRA 746


>gi|300869424|ref|ZP_07114009.1| hypothetical protein OSCI_4080003 [Oscillatoria sp. PCC 6506]
 gi|300332554|emb|CBN59207.1| hypothetical protein OSCI_4080003 [Oscillatoria sp. PCC 6506]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDNE N+      ++  GY  L  +NG EA+ L     PD+I+MDIQ+  + GLE 
Sbjct: 109 ILLAEDNEANISTVSSYLKAKGYRILLAKNGAEAIALTNSENPDLILMDIQMPGMDGLEA 168

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              I+       +P+IA+TA AM  D +R    G   Y++KP+ L     TI++ +
Sbjct: 169 IDHIRSAPNSVNVPIIALTALAMTSDRDRCLAAGANDYLTKPVKLKQLATTIQQLL 224


>gi|209523935|ref|ZP_03272487.1| response regulator receiver modulated serine phosphatase
           [Arthrospira maxima CS-328]
 gi|209495607|gb|EDZ95910.1| response regulator receiver modulated serine phosphatase
           [Arthrospira maxima CS-328]
          Length = 394

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 63/120 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D+ +  +L +  ++  GY  +   NG E +E A++ +P ++I D  +  ++G
Sbjct: 17  MFKILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTG 76

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +Q+K   EL       +T+     D  +    G + ++SKPI ++     ++  + 
Sbjct: 77  IEVCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLR 136


>gi|206967861|ref|ZP_03228817.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229177114|ref|ZP_04304503.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188792|ref|ZP_04315827.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|206736781|gb|EDZ53928.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228594693|gb|EEK52477.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606295|gb|EEK63727.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 223

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL L  Q + D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
 gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
 gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2062

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N +L   L+E  G+      NG++A+  ++  K D+I+MD+Q+    G E 
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQLRKFDLILMDVQMPHCGGFEA 1790

Query: 65   TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T QI++    Q    P+IA+TA A+  D  +  + G + YISKPI+       I+KY+
Sbjct: 1791 TAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYL 1848



 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEIS 60
            +IV+DN+  +K+ + ++   G  +  + N  +A  +           + I +D QL    
Sbjct: 1592 LIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTKPFEFIFVDAQL---- 1647

Query: 61   GLEITKQIKEDS-ELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            G  +   + E +    +  +I + +    +G  +         Y+SKP+S S   + + +
Sbjct: 1648 GTSLIDMMVEKNMNHCKTKIIMLISGGGQRGYPDSSSNF-ITGYLSKPVSPSEIFDILTR 1706


>gi|90424800|ref|YP_533170.1| response regulator receiver domain-containing protein
           [Rhodopseudomonas palustris BisB18]
 gi|90106814|gb|ABD88851.1| response regulator receiver domain protein (CheY-like)
           [Rhodopseudomonas palustris BisB18]
          Length = 121

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 82/121 (67%), Positives = 103/121 (85%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T NG EALEL R+ +PD+I+MDIQL ++S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSNGYEALELVRKLRPDLILMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET++++I
Sbjct: 61  GLEVTRWIKDDPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 237

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  +++I +D++    L +  +E   Y+     +G  AL+L  Q+   ++I+D+ + ++
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++++   +   +P++ +TA     D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRKLR---DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKAL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|307151036|ref|YP_003886420.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
 gi|306981264|gb|ADN13145.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
          Length = 121

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  V++VED     +L    +  +GY  +   +G EA+E     KPDVI+ D+ +  ++
Sbjct: 1   MMTTVLVVEDTLSEQELISLYLRKAGYTVITANDGKEAIEKTLAQKPDVIVTDVVMPNMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + IK++ + Q++PVIA T+     D     K G + Y++KP +    +  +K   
Sbjct: 61  GFELCRSIKKNPQTQKLPVIACTSKTQDLDRLWGMKQGIDVYVTKPFTPEELIRAVKSVA 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|162456898|ref|YP_001619265.1| response regulator [Sorangium cellulosum 'So ce 56']
 gi|161167480|emb|CAN98785.1| response regulator [Sorangium cellulosum 'So ce 56']
          Length = 270

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++I+ED    +    D +E  G+       G + + LARQ KPD I++D+ L + +G 
Sbjct: 45  KKILIIEDEPHIVLGLTDALEFEGFSVASASKGKDGVLLARQEKPDAILLDLMLPDTNGF 104

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + ++       +P+I +TA   + D+ R    G + Y++KP S+   +  ++     
Sbjct: 105 KVCEDLRRWDAF--VPIIMLTARGQEIDKIRGLDAGADDYVTKPFSVGELIARLRALFRR 162

Query: 123 A 123
           A
Sbjct: 163 A 163


>gi|110635445|ref|YP_675653.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286429|gb|ABG64488.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 64/120 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+M+VED+E    L R  +E  GY       G EA    +++ PD++++D  +  ISG+E
Sbjct: 5   KIMVVEDDEPLCVLLRYNLEAEGYQVEVVTRGDEAEVRLQENVPDLLVLDWMVPAISGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K   E + +P+I +TA   + D  R    G + Y+ KP S   F+  ++  +  A
Sbjct: 65  LCRRLKMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFIARVRALLRRA 124


>gi|330503212|ref|YP_004380081.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328917498|gb|AEB58329.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 656

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N  +   ++ + GY      +G +A++   Q     I+MD +L  + G E 
Sbjct: 537 VLLVEDNPVNQTVIEAMLRSLGYQVSLVGDGQQAVQSCSQQDYAAILMDCRLPLMDGYEA 596

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+QI++  + +++P+IA+TA A++GD E   + G   Y++KP   +     + +++
Sbjct: 597 TRQIRQLEQGRQVPIIALTANALQGDREACLEAGMNDYLAKPFKRADLQRILLRWL 652


>gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IV+D +    L    ++  GY   +  NG++ALE     K D+ I+D+ L +I 
Sbjct: 1   MSEQILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQKMDLAILDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       P+I +TA     D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFRICQKIREQYFY---PIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 238

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++V+D+     + R  +E  G     + +G +AL  A +  PD++++D+ +  + 
Sbjct: 7   MGRYVLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEPPDLVVLDLMMPGLD 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++      L  +PV+ +TA   + D     + G + Y++KP S    +  I+  +
Sbjct: 67  GIEVCRR--LRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVL 124

Query: 121 GEA 123
             A
Sbjct: 125 RRA 127


>gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +KV++VED+EL  +   D  +   +   + ++G  A+EL   H  D++++DI + E+ 
Sbjct: 1   MKRKVLLVEDDELIREFVSDYFKKEAWEVYEAQHGKMAMELFALHSVDLVVLDIMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S   +IP+I +TA     D+    + G + Y++KP S  + +   K  +
Sbjct: 61  GWSVCRKIRQQS---DIPIIIITARVDDDDQLMGFELGADEYVTKPFSPKVLVARAKALM 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|330873088|gb|EGH07237.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 705

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D+     L   L++  GY  L   +G +AL +  +  PD+I++DI +  + G 
Sbjct: 6   ATILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDERAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+   +K       IP+I ++A   +G      + G E Y+SKP+  +     ++  + 
Sbjct: 66  EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLR 124


>gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 227

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+ IV+D+    ++    +E  G+  ++  +G+ AL   ++  P +II+D+ L  I G+
Sbjct: 5   KKIYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKIKEELPLLIILDLMLPGIDGM 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K++++      +P+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 65  TLCKEVRK---FTNVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRR 121


>gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D++  ++     +E  GY   +  NG+EALEL   ++  +IIMDI + ++ GL  
Sbjct: 3   ILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNEIHLIIMDIMMPKMDGLRA 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E+   + IPVI ++A +   D+      G + YI+KP +    +  IK  +  
Sbjct: 63  TMKIREE---KNIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRR 117


>gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
 gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
          Length = 1078

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED  +N    R L+E +G+     +NG E L+L R+   D ++MD+Q+  +SG+E
Sbjct: 954  RLLLAEDEAINQLAMRTLLEKAGHRVSIAQNGQEVLDLLREEDFDCVLMDVQMPVMSGIE 1013

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T++I+   EL   +++P+IA+TA AM GD E   + G + Y+SKP+ L   ++ I K  
Sbjct: 1014 ATRRIRTSPELAARKDVPIIALTAHAMSGDRESFLQAGMDDYLSKPVGLDDLVKAIAKLK 1073

Query: 121  GEA 123
              +
Sbjct: 1074 SRS 1076


>gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
 gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
          Length = 244

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I ED      +    +++ GY  ++  +G +AL+        ++++DI + +  G
Sbjct: 23  MIKILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDNFSLVLLDIMMPKRDG 82

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+  +I++   L ++P+I +TA   + DE    + G + YISKP S  I +  +K  + 
Sbjct: 83  LEVCAEIRK---LSDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILK 139

Query: 122 EA 123
            A
Sbjct: 140 RA 141


>gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +  R ++   GY      NG   L+LA  H  D++I+D  L  +SGLE
Sbjct: 2   RILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGYDLLILDWMLPYLSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I +Q++   +    PV+ +TA     D       G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQQLRSQGKT--TPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRRS 119


>gi|167645461|ref|YP_001683124.1| response regulator receiver protein [Caulobacter sp. K31]
 gi|167347891|gb|ABZ70626.1| response regulator receiver protein [Caulobacter sp. K31]
          Length = 127

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 85/122 (69%), Positives = 105/122 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL+E  GY  LQTR G++AL +AR+H+PD+I+MDIQL EIS
Sbjct: 6   MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLQALSIAREHRPDLILMDIQLPEIS 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED +L  IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+S F++TI++ +
Sbjct: 66  GLEVTKWLKEDDDLSHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVSHFLDTIRRLL 125

Query: 121 GE 122
             
Sbjct: 126 ER 127


>gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1199

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 59/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   L+   GY   +  NG  AL     + PD+I++DI +  + G E+
Sbjct: 13  ILIVDDQPDNLRVLSALLRKRGYECRRAINGQLALRACNSNPPDLILLDIVMPVVDGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            KQ+K   +  +IPVI ++A     ++ +    G   YISKP      +  ++  +
Sbjct: 73  CKQLKSGEKTCDIPVIFLSAKGEVFEKVKAFAAGGADYISKPFHSEEVLARVEHQL 128



 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 68/108 (62%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV++V+DN++N  + R+L+E  G+  ++  +G E L  A + KPDVI+MD+ +  + G 
Sbjct: 970  RKVLVVDDNQINRDILRNLLEPLGFEIIEAADGKECLNKAVEFKPDVILMDLVMPVMDGF 1029

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110
            E T++++   EL++I ++A++A A    +     GG + ++ KPI + 
Sbjct: 1030 EATRRLRYLPELKDIVLLAISASAFDNTKLDFLLGGSDNFLIKPIEVK 1077


>gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268]
 gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +   +L    + + GY   +  N  E L++  Q +  ++++D+ +  ++GLE+
Sbjct: 6   ILVVDDEKEIAELVEIYLVSDGYKVFKAYNAEEGLQILSQEEIHLVLLDVMMPGMNGLEM 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E S    IPVI ++A +   D+     GG + Y++KP +       +K  +  
Sbjct: 66  CRKIRESS---NIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120


>gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 232

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 1   ML---KKVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M+    KV++V+D     +  +  ++    +      N  EA +L  Q  P+++I DI +
Sbjct: 1   MMDTPAKVLLVDDEPGVRESVQAYLQYGDEFEVRTASNANEAWDLLNQEIPELVISDIMM 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            ++ G +  K+++ED+  Q IPV+ +TA  M  D  +    GC+AY+SKP         I
Sbjct: 61  PQVDGYQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALI 120

Query: 117 KKYIGE 122
           K  I  
Sbjct: 121 KSLIER 126


>gi|89519308|gb|ABD75785.1| putative signal transduction histidine kinase [uncultured bacterium]
          Length = 1323

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K +++V+D+  N+     ++E  G   L   +G +A+EL  Q+   D+++MDI + E+ G
Sbjct: 1204 KTILMVDDDMRNVFALSSILEEKGMQVLIGEHGQDAMELLDQNPDIDLVLMDIMMPEMDG 1263

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  +QI++  + + +P+IA+TA AMKGD ++    G   Y+SKP+     +  ++ ++
Sbjct: 1264 YEAMRQIRQQPKFKTLPIIALTAKAMKGDRQKCIDAGANDYLSKPVDTDKLLSLLRVWL 1322



 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 14/126 (11%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+    K+  DL    G+  L   +G   L+LA Q+ P  I++DI L  + G  + 
Sbjct: 939  LIIEDDPNFAKILFDLAREKGFKGLIAGDGAAGLQLAYQYIPSAILLDIALPGMDGWMVM 998

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME----------- 114
            +++K++ E + IPV  ++ +A      +  K G   Y++KP++L    E           
Sbjct: 999  EKLKQNPETRHIPVHFISVYAQS---LKAMKMGAVGYLTKPVTLETLDEAFTTIEHAISK 1055

Query: 115  TIKKYI 120
            TIKK +
Sbjct: 1056 TIKKLL 1061



 Score = 80.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 1/115 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK++IVE++E   +   +L+  +    L T+ G +A  L +  + D +++D+ L +ISG 
Sbjct: 1058 KKLLIVENDETTSQGMLELLSGADVDILTTQTGEDAYTLLKSDEFDGMVLDLGLADISGF 1117

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI 116
            E+ ++I++D+ +  +PVI  TA  +  DEE       E+ I K + S    ++ +
Sbjct: 1118 ELLERIRDDTTMSSLPVIVYTAKDLTKDEEMKLTKHAESIIIKGVKSQDRLLDEV 1172


>gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 238

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED     +L    +  +G+       G  AL+LA + +PD++++D+ L ++ G 
Sbjct: 7   ATLLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPDMDGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            IT++++E    Q +PV+ +TA     D+ +    G + Y++KP SL   +  I+  +  
Sbjct: 67  TITRRLRERD--QHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRR 124

Query: 123 A 123
           +
Sbjct: 125 S 125


>gi|114798852|ref|YP_760979.1| response regulator PleD [Hyphomonas neptunium ATCC 15444]
 gi|114739026|gb|ABI77151.1| response regulator PleD [Hyphomonas neptunium ATCC 15444]
          Length = 455

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N +L +  +E   +  L   NG +ALE+A++  P++I++D+ +  + 
Sbjct: 1   MTARILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALEVAQRENPEIILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D     IPV+ VTA +   D  +    G E +++KP+   +    I   +
Sbjct: 61  GYEVCQRLKADPTTSYIPVVMVTALSEMEDRVKGLAAGAEDFLTKPVDDFLLNSRITALM 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQLQEISG 61
           ++ IV+D+  +     + +   G+        MEA ++      + DV+I+ +  +    
Sbjct: 155 RIFIVDDDARSSGRLANTLRAQGHK---ATTLMEAGDMGELATERVDVLILSLFARSFDP 211

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
           L++    K +   + I VI +     K    R  + G    I+ PI       
Sbjct: 212 LKLIAHFKMNPVTRSISVILICDPHDKAKALRGLEIGASDMITIPIDRQELAA 264


>gi|89899322|ref|YP_521793.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344059|gb|ABD68262.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 234

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++++ED+    ++  + +  SG++     +G   L   +   PD++I+D+ L ++ 
Sbjct: 1   MTQHLLMIEDDTRLAQMVSEYLAQSGFVVGHAGDGQTGLTDLQSDPPDLVILDLMLPDMD 60

Query: 61  GLEITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           GLE+ ++I+     L +IPV+ +TA     D     + G + Y+ KP      +  I+  
Sbjct: 61  GLEVCRRIRSLPGALAQIPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|312886453|ref|ZP_07746062.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311301081|gb|EFQ78141.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1346

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN+      ++ +E S Y   +  NG +  + A    PD+++ D+ +  + G+E+
Sbjct: 1085 ILLVDDNDDFRNYLKESLEKS-YTVTEATNGKDGWQKALSGHPDLVVSDVSMPVMDGIEL 1143

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++IK D     IPVI +TA   + D  R  +     Y++KP S  I    IK  I
Sbjct: 1144 CRKIKTDKRTSFIPVILLTALGREEDHIRGLQTEANDYLTKPFSFEILNTRIKNMI 1199


>gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R  KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           + KV+I+ED E         ++ +G+  L+  +G EAL   +     D+ ++D+ +  I 
Sbjct: 1   MSKVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+E +E   I +I +TA   + D+      G + ++SKP S +  +  I+  +
Sbjct: 61  GFEVCRRIRETNE--RIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G +
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGYD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 67  VCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 221

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     +  ++++ SGY+     +G+ A+E+ R+   D+I++D+ L +I 
Sbjct: 1   MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIVLDVMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S    +P+I +TA   + DE +  +   + YI+KP S+++ ++ ++  +
Sbjct: 61  GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 233

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV++V+D E   +L R  +E +GY     +NG+E L    ++ PD+II+D+ L  I G+
Sbjct: 10  QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLIILDLMLPGIGGM 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+IKE      +P+I VTA + + +     + G + Y+ KP S    +  ++  +  
Sbjct: 70  DLCKKIKEK---YSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRR 126


>gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 243

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+     L R  +   G+  +   +G     +  +   D+I++D+ +    GL 
Sbjct: 10  KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  ++    P+I +TA     D     + G + Y+ KP +    +  +   +  
Sbjct: 70  VCRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126


>gi|300866673|ref|ZP_07111359.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335347|emb|CBN56519.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 425

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 61/115 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N+ +    ++ + Y      +G +AL    +H P++I++DI++  + G E 
Sbjct: 9   ILIVDDNTTNLSVLSQALKAAQYKVRMATDGEDALAQVERHHPELILLDIEMPNMDGFET 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            ++++ +   Q IP+I +T+ A    + +    G   YI+KP   S  +  IK +
Sbjct: 69  CRRLQANPTTQGIPIIFMTSLADTEKKVKGLSLGAVDYITKPFEASEVLARIKVH 123


>gi|119490634|ref|ZP_01623039.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
           8106]
 gi|119453799|gb|EAW34956.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
           8106]
          Length = 329

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 69/116 (59%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D   N+++  D++E  GY      +G +ALE A+  +PD+I++D+ + +++GLE+
Sbjct: 10  VLVVDDITRNLQVLADMLEQVGYEVTFATDGQQALERAKVAEPDLILLDLMMPKMNGLEV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D +L EIPVI +TA   K       K G   YI+KP      +  ++ ++
Sbjct: 70  CQKLKNDEKLCEIPVIFLTASEEKEHLLEAFKQGAVDYITKPFYAPELLARVRVHL 125


>gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 239

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + +V+D+     L    +   GY      +G     +  +  PD++++DI +    GL 
Sbjct: 6   HIAVVDDHRDIRDLVGKYLTHQGYRVSVAESGEALRRILEKGAPDLVVLDIMMPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++      E+PVI +TA A   D     + G + YI+KP +    +  I+  +  
Sbjct: 66  VCRQLR---TTTELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRR 121


>gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 229

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M++K  ++IV+D+    K+    ++  GY  +   + +EALE  R    D+II+DI L +
Sbjct: 1   MMQKEKILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G+E   +I+E     ++P+I ++A     D+ +    G E YI+KP +    M  IK 
Sbjct: 61  MDGIEACLKIREQ---YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKS 117

Query: 119 YIGE 122
            +  
Sbjct: 118 QLRR 121


>gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 1307

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++ +DN       R ++  + +      +G  AL++AR+  PD++I D+ +  + G
Sbjct: 653 SARILLADDNADMRMYVRRIL-DARWTVEAVSDGAAALDVARRSPPDLVIADVMMPGLDG 711

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI- 120
             + + ++ D   + +PVI ++A A +         G + Y+ KP S    +  +  ++ 
Sbjct: 712 FGLLRALRADPVTRCVPVIMLSARAGEESRVEGLAAGADDYLVKPFSARELIARVATHLQ 771

Query: 121 ----GEA 123
                 A
Sbjct: 772 LGEHRRA 778



 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 61/115 (53%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++V+DN   ++L  + +   GY      +G  AL +A +  PDV ++DI L  + G 
Sbjct: 1185 RRILLVDDNLDAVELLAESLGAMGYTTRVAPDGPSALRIAEEFAPDVALLDIGLPVMDGY 1244

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E+ ++++E    + + +IA+T +  + D  R    G E ++ KPI +      ++
Sbjct: 1245 ELARRLREQPAGERVRLIAITGYGQEADFRRSEGAGFETHLVKPIQIERLTSLLE 1299


>gi|260777826|ref|ZP_05886719.1| pole remodelling regulatory diguanylate cyclase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605839|gb|EEX32124.1| pole remodelling regulatory diguanylate cyclase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 376

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN  N  L   L++   +  L    G++A+ + +Q KPD++++D+ + E+ G E+
Sbjct: 8   VLVVDDNAENRVLLSGLLKPH-HRVLVATGGVQAINICKQKKPDIVLLDVMMPEMDGYEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +++  D E  +IPVI +TA +   DE+R    G   YI KPIS  I +  I  ++ 
Sbjct: 67  CERLTSDPETHDIPVIFLTAKSQIEDEQRGFAAGAVDYILKPISPPILISRINTHLR 123


>gi|121998680|ref|YP_001003467.1| response regulator receiver protein [Halorhodospira halophila SL1]
 gi|121590085|gb|ABM62665.1| response regulator receiver protein [Halorhodospira halophila SL1]
          Length = 125

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 67/120 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IV+D +  +     L++ +G+     ++G +A+E      PD++++D+ +    
Sbjct: 1   MSQEILIVDDEDNIVLSLEFLMKQAGFEVRTAQDGEQAIEALEARIPDLVLLDVMMPRKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ SE   +PV+ +TA     + E+    G + YI+KP S    +ET++  +
Sbjct: 61  GYEVCQEIRQRSEWAHLPVVMLTAKGRDVEREKGLAMGADDYITKPFSTQEVVETVQHIL 120


>gi|297565188|ref|YP_003684160.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849637|gb|ADH62652.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 223

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     ++  D +   GY   + ++G  ALEL R  +PD+I++D+ L  + 
Sbjct: 1   MSTSILIVEDEIRLAEILEDYLRREGYKTERAKDGGRALELWRVAQPDLILLDLMLPVLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+ +S   ++P+I +TA   + D+      G + Y+ KP S    +  +K  +
Sbjct: 61  GLEVARRIRAES---DVPIIMLTARDDEVDKLVGLGLGADDYVVKPYSPREVVARVKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268]
 gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268]
          Length = 224

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D E   KL +D ++   Y  L   NG EA++L  ++    +II+D+ + ++ G 
Sbjct: 5   KILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEKSIALIILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              K I+E S+   +PVI +TA + + DE +    G + YISKP S  I +  ++  +  
Sbjct: 65  TALKTIREHSK---VPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|224537165|ref|ZP_03677704.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521220|gb|EEF90325.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1288

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IV+DN+      +   E   Y  L+  NG EA EL ++  P++II D+ + ++ G E+
Sbjct: 1043 ILIVDDNKDLRNFLKCSFENQ-YNILEAGNGNEAWELLQKESPELIISDVMMPDMDGFEL 1101

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             K IK   E   IPVI +T+   K D+      G E YI+KP  +S+  + IK  + 
Sbjct: 1102 CKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMR 1158


>gi|172036101|ref|YP_001802602.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
 gi|171697555|gb|ACB50536.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
          Length = 1349

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--------HKPDVIIMDI 54
             K++IVEDN       + L++   Y      +G+EAL L R            D+++ DI
Sbjct: 959  AKILIVEDNGDMRDYLKKLLDPY-YEVETVNDGLEALTLIRNVSDHNNNGGMYDLVLTDI 1017

Query: 55   QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
             +  + G E+ + ++   E Q+IP+I ++A   +  +    + G + Y+ KP S    + 
Sbjct: 1018 MMPRLDGFELLRSLRNKPETQKIPIIMISARTGEESQVEGLEAGADDYLGKPFSARQLLT 1077

Query: 115  TIKKYI 120
             ++ ++
Sbjct: 1078 RVESHL 1083


>gi|157151302|ref|YP_001449801.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157076096|gb|ABV10779.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 228

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED     ++    +E  GY      NG EAL LA Q+  +VII+DI +  ++GLE
Sbjct: 2   RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTYNVIILDIMMPIMTGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             K+I+         VI +TA A   D       G + Y++KP SL   +  ++     A
Sbjct: 62  ALKEIRATGNTTH--VIMLTAMAEVDDRVNGLDAGADDYLTKPFSLKELLARLRSMARRA 119


>gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED +    +    +   GY      +G     +ARQ+  DVII+DI L  ++G +
Sbjct: 2   RLLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIMLPGMNGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E       P++ +TA   + DE      G + Y++KP S  +    I+  +  +
Sbjct: 62  VCRKLREAEV--RTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRS 119


>gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 243

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++ED     +L    +   G+      +G    E A QH+ D+I++D+ L  ++
Sbjct: 1   MTQRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++++ +      P+I +TA   + +  +  K G + YI+KP  +S  +  +   +
Sbjct: 61  GFQILEKLRSNGIT--TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  YI  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|109899128|ref|YP_662383.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109701409|gb|ABG41329.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 720

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVEDNE+N ++ + ++E +GY  +   +G +AL+     + D+I+MD+ +  + G+ 
Sbjct: 604 KILIVEDNEINAEVVKVMLEGAGYQIVIATDGEKALQACIFEQYDLILMDMHMPVMDGIT 663

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++++ +      P+IA++A A   D E   + G   +ISKP+     + TIK++I
Sbjct: 664 ATQKLRREMNFTN-PIIALSANAFVEDREHCIEAGMNDFISKPVEKQALLATIKRHI 719



 Score = 55.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 13/119 (10%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           IV+D + + +  + ++ + G +     N  + L      + DV+++D+ + EI+G+++ +
Sbjct: 474 IVDDLQTSREYIQHIVTSLGCLPNTFDNAEDFLAS-DISQFDVLLLDLSMPEITGVDVVE 532

Query: 67  QIKEDSELQEIP-VIAVTAFAMKGD-----EERIRKGGCEAYISKPISLSIFMETIKKY 119
            ++ D +L ++P +I V+A     D      + I +        KPI        +KK 
Sbjct: 533 TLR-DRQLSKLPHIIIVSAVIEHLDCSTSVRDLIWRTHA-----KPIVRQELESDLKKL 585


>gi|325299898|ref|YP_004259815.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324319451|gb|ADY37342.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1366

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED+E         +  + Y      NG EALE+  + +P +II D+ + E+ GL +
Sbjct: 1100 ILVVEDDEEIRNYISREL-AADYHVGTCSNGKEALEVIFKQEPALIISDVMMPEMDGLTL 1158

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K++   + IP+I +TA     D     + G +AY++KP ++ I   T++  I
Sbjct: 1159 CRMVKQNLHKRHIPIILLTAKTRDEDNIEGLETGADAYLTKPFNMKILRHTVENLI 1214


>gi|299146270|ref|ZP_07039338.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
 gi|298516761|gb|EFI40642.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
          Length = 1411

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K V++VEDNE      +  +E   Y  L+  NG +A E+  +  PD+++ DI +  I GL
Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1208

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+   IK + +   IPVI +TA  M    +     G + Y+ KP ++ + +  I   + +
Sbjct: 1209 ELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1268


>gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 222

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+++ED E    + +  +E + + A    +G   +++ + +  D++++D+ L ++SG
Sbjct: 1   MAKVLVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVMLPDMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K I+E S+   IPV+ +TA + + D     + G + Y+ KP S    +  IK  + 
Sbjct: 61  WNVLKTIRESSK---IPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILS 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + 
Sbjct: 3   MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  +
Sbjct: 63  GFQVCKTIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 242

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 55/119 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G +  E A+   PD+II D+ +   +G  
Sbjct: 16  RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAKTIFPDLIISDVMMPRANGYA 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ED +L   PVI +TA  M  D       G + YISKP         +K  I  
Sbjct: 76  LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134


>gi|160883701|ref|ZP_02064704.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483]
 gi|156110786|gb|EDO12531.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483]
          Length = 1411

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K V++VEDNE      +  +E   Y  L+  NG +A E+  +  PD+++ DI +  I GL
Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1208

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+   IK + +   IPVI +TA  M    +     G + Y+ KP ++ + +  I   + +
Sbjct: 1209 ELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1268


>gi|330888167|gb|EGH20828.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 645

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y++KP   +   + + +++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQVLHRWL 634


>gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 229

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
 gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
          Length = 228

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED +   +  +  +E   Y     ++G E +E  + +  D+I++D+ + + SG
Sbjct: 1   MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKFKNNFYDIILLDLMMPKFSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K I++      IP+I +TA     ++  +   G + Y++KP  +      I+  + 
Sbjct: 61  EEVCKIIRK---TSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALR 117


>gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G   Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLL 117


>gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 242

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 55/119 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G +  E A+   PD+II D+ +   +G  
Sbjct: 16  RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTVFPDLIISDVMMPRANGYA 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ED +L   PVI +TA  M  D       G + YISKP         +K  I  
Sbjct: 76  LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134


>gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeovibrioides DSM 265]
          Length = 236

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 61/117 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED+    KL    +E +GY  L + NG +A +   +   D++++D+ L  I G E+ 
Sbjct: 7   LVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVMLPGIDGFEVC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I++    ++IP+I +TA   + D+    + G + Y+ KP S       I+  +  
Sbjct: 67  RKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKR 123


>gi|262197840|ref|YP_003269049.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262081187|gb|ACY17156.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 235

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IVED    ++  RD ++  G+       GME L+ A +  PD +++D+ L + +G 
Sbjct: 11  RKILIVEDEPDIVRGLRDALQFEGFQVEARGTGMEGLDAAAEWGPDCVLLDLMLPDENGY 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++    +  +P+I +TA +   D+ R  + G + Y++KP S++  +  I      
Sbjct: 71  RVCETLRSRDPV--VPIIILTAKSQDVDKVRGLEAGADDYVTKPFSVAELIARINAIFRR 128


>gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264]
 gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264]
          Length = 229

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M++K  ++IV+D+    K+    ++  GY  +   + +EALE  R    D+II+DI L +
Sbjct: 1   MMQKEKILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNKTIDLIILDIMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G+E   +I+E     ++P+I ++A     D+ +    G E YI+KP +    M  IK 
Sbjct: 61  MDGIEACLKIREQ---YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKS 117

Query: 119 YIGE 122
            +  
Sbjct: 118 QLRR 121


>gi|307152144|ref|YP_003887528.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306982372|gb|ADN14253.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 360

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 70/116 (60%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L  D+++ SGY      +G +A E  R   PD+I++D+ + E++GL++
Sbjct: 55  ILVVDDLSKNLQLVVDILDHSGYATTFATSGQQAFERVRTAHPDLILLDLMMPEMNGLQV 114

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + E QEIP+I +TA   +GD     K G   Y++KP   +  +  +K ++
Sbjct: 115 CEKLKSNQEYQEIPIIFLTASDEEGDLLEAFKLGAVDYVTKPFRAAELLARVKNHL 170


>gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 233

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E      +  +E  GY  +  ++G EALEL ++ KP +I++D  L    G+ 
Sbjct: 7   KILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWMLPVYDGIT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ SE   +P+I +TA     D       G + YI+KP  +      I+  +  
Sbjct: 67  VLRRIRKKSE---VPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRR 122


>gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51]
 gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D +    L    ++   Y   +  NG +AL+   + K D+ I+D+ L ++ 
Sbjct: 1   MAANILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I +QI+E       PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GFSICRQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34]
 gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34]
 gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR
 gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34]
 gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34]
 gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in
           Cd(II), Zn(II), Co(II) resistance [Cupriavidus
           metallidurans CH34]
          Length = 225

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED     +  +  +  SG++     NG + L +A +   DVII+D+ L  + G  
Sbjct: 2   RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+  SE    PV+ +TA     D  R  + G + Y+ KP + +  +  I++ + ++
Sbjct: 62  VIKSIRSKSET---PVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQS 118


>gi|254504929|ref|ZP_05117080.1| response regulator receiver domain, putative [Labrenzia alexandrii
           DFL-11]
 gi|222441000|gb|EEE47679.1| response regulator receiver domain, putative [Labrenzia alexandrii
           DFL-11]
          Length = 123

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 85/122 (69%), Positives = 106/122 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  G+  LQTR G+EAL+LAR+++PD+I+MDIQL E+S
Sbjct: 1   MAKTVLIVEDNELNMKLFHDLLEAHGFDTLQTRTGIEALKLARENRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IKED  +  IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+S F++T+K ++
Sbjct: 61  GLEVTKWIKEDESIASIPVVAVTAFAMKGDEERIRQGGCEAYISKPISVSKFLDTVKSFL 120

Query: 121 GE 122
           GE
Sbjct: 121 GE 122


>gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+D     ++ +  +E  GY      NG +A+    +  PD+II+D+ L +ISG 
Sbjct: 6   RKILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGYNEFNPDLIILDLMLPDISGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI K+I++ S    +P+I +TA     +       G + Y+ KP S    +  +   +  
Sbjct: 66  EICKRIRKISL---VPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLRR 122


>gi|146305210|ref|YP_001185675.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145573411|gb|ABP82943.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1168

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +++++V+D+  N+      +E  G      RNG EAL    +H   D+++MD+ + E+ G
Sbjct: 1044 RRLLLVDDDVRNIFALSSALEQKGAAVEVARNGFEALAKLDEHDDIDLVLMDVMMPEMDG 1103

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T++I++      +P+IAVTA AMK D+ER R+ G   Y++KPI L      I+ ++ 
Sbjct: 1104 YEATRKIRQQPRWNNLPIIAVTAKAMKDDQERCRESGANDYLAKPIDLDRLFSLIRVWMP 1163

Query: 122  E 122
            +
Sbjct: 1164 K 1164



 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED     ++  DL    GY  L   +  E LELARQ++PD I++D++L + SGL
Sbjct: 776 RRVLVVEDEVRFARILFDLAHELGYACLVATSADEGLELARQYRPDAILLDMRLPDDSGL 835

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            + +++K+D++ + IPV  V+   ++   E     G   Y  KP S     E 
Sbjct: 836 GVLQRLKDDAQTRHIPVHVVS---VEDHSEAALHLGAVGYALKPTSRDQLKEV 885



 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++VED+ L       LI              EALE  R    D +I+D++L ++ G 
Sbjct: 898 KRVLLVEDDPLQRNSIARLIGDEDIEISAVALAGEALEKLRDTVFDCMIIDLKLPDMLGN 957

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ +++ E+      PVI  T   +  +EE 
Sbjct: 958 ELLRRMAEEDICSFPPVIVYTGRNLTREEEA 988


>gi|289628096|ref|ZP_06461050.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646717|ref|ZP_06478060.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867455|gb|EGH02164.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 645

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y++KP   +   + + +++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQVLHRWL 634


>gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++  ++  +  +   GY    + NG EAL      K D+I+MDI + +I 
Sbjct: 1   MNYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K I++   L    +I +TA   + D+ +    GC+ YI+KP  L      +   +
Sbjct: 61  GFEAIKIIRK---LTNTLIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 226

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +    Y      +G  A+E  R   PD+II+D+ L  + G E 
Sbjct: 6   ILVVDDEPDVAQLLSLQLTMEKYRVQIAYDGPTAIEYVRSLTPDLIILDVMLPAMDGYET 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ +TA             G + Y++KP S S  +  ++  +  
Sbjct: 66  CRRIRE---FSNVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRR 120


>gi|73538429|ref|YP_298796.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72121766|gb|AAZ63952.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 396

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+IV+D+    +L R+ ++  GY A    +G          +PD+I++D+ L    
Sbjct: 1   MPGHVLIVDDDAETRRLLREYLQKQGYRATAVADGRALRAALGTARPDLIVLDLMLAGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++  S    +P+I +TA   + D     + G + Y+ KP +    +  IK  +
Sbjct: 61  GLELCRDLRTRS---NLPIIMLTARDEETDRVVGLEMGADDYVVKPFNPRELLARIKSVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
 gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
          Length = 223

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I +D    + L +D  E +GY+    +NG EA++ A   +PD+I++DI + E  G
Sbjct: 1   MYKILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIKQA-SRQPDIILLDINMPEADG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+   +    P++ +TA     D+      G + YI KP SL      I  +I 
Sbjct: 60  IEVCRRIR---DYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius CECT 5713]
          Length = 233

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D +    L +  +E +GY      NG +AL+     K D II+D+ L  I G
Sbjct: 1   MAKVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK+I+++       ++ +TA   + D+    + G + Y++KP S    +  +K    
Sbjct: 61  IEVTKRIRQEKIT--TYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 224

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEG-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K   
Sbjct: 59  GYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|126658457|ref|ZP_01729605.1| CheY subfamily protein [Cyanothece sp. CCY0110]
 gi|126620199|gb|EAZ90920.1| CheY subfamily protein [Cyanothece sp. CCY0110]
          Length = 121

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 70/121 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V++VED+    K+   +++ +G+  +   +G +ALE  +   PD+I++DI + +++G
Sbjct: 1   MRAVLVVEDSPAQQKMIATILKKNGWQVIIAEDGFQALESIKDSSPDLIVLDIVMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++IK +   Q +P++  ++   + D     K G +AYISKP      + TI++ + 
Sbjct: 61  YEVCRRIKTNPSTQNVPIVMCSSKGEEFDRYWGIKQGADAYISKPFEDIELIGTIQQLLR 120

Query: 122 E 122
           +
Sbjct: 121 Q 121


>gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 222

 Score =  156 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E    + +  +   GY      +G EA   A+    D+II+DI L +  G+ 
Sbjct: 2   KILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIMLPKKDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I++++     P++ +TA    GD  +    G + Y+ KP         ++  +  
Sbjct: 62  VCQNIRKENI--NTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRR 118


>gi|94270843|ref|ZP_01291837.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450645|gb|EAT01750.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 483

 Score =  156 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ EDN  N ++ + +++  G  A    NG EA+E  +    D+++MD+Q+ E+ GL
Sbjct: 222 ARILLAEDNISNQQVAQGILKKLGLSADAVANGREAIEALKTLPYDLVLMDVQMPEMDGL 281

Query: 63  EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T+QI+        + IP+IA+TA AM+GD E+    G   Y++KP+S     E ++K+
Sbjct: 282 EATRQIRNPKSPIPNRNIPIIAMTAHAMQGDREKCLAAGMNDYVAKPVSPQDLAEALEKW 341

Query: 120 IGE 122
           + E
Sbjct: 342 LPE 344


>gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 217

 Score =  156 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED E   K+ +  +E  G+   +  +G EA+E  +     V+I+D+ L +  G  
Sbjct: 2   KILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++     + PVI +TA     D+    + G + Y+ KP+S    +  +K  +  +
Sbjct: 62  VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRS 118


>gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  156 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ ++ +   GY  L+  +G +AL L ++H+  +II+D+ L E+ 
Sbjct: 1   MAKTILIVEDQQVLREIMKEYLMDEGYEVLEAGDGSQALTLFQEHEVHLIILDVMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++   +  +P++ +TA + + D     + G + Y+ KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---VSNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLL 117


>gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX]
          Length = 225

 Score =  156 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +ALE  R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLPGAD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +QI+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIDVCRQIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|17989004|ref|NP_541637.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23500356|ref|NP_699796.1| polar differentiation response regulator [Brucella suis 1330]
 gi|62317532|ref|YP_223385.1| DivK, polar differentiation response regulator [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269512|ref|YP_418803.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|161620674|ref|YP_001594560.1| hypothetical protein BCAN_B0613 [Brucella canis ATCC 23365]
 gi|163844764|ref|YP_001622419.1| hypothetical protein BSUIS_B0609 [Brucella suis ATCC 23445]
 gi|189022787|ref|YP_001932528.1| Response regulator receiver [Brucella abortus S19]
 gi|225629102|ref|ZP_03787135.1| two component response regulator [Brucella ceti str. Cudo]
 gi|225686398|ref|YP_002734370.1| hypothetical protein BMEA_B0587 [Brucella melitensis ATCC 23457]
 gi|237817080|ref|ZP_04596072.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|254691029|ref|ZP_05154283.1| polar differentiation response regulator [Brucella abortus bv. 6
           str. 870]
 gi|254695664|ref|ZP_05157492.1| polar differentiation response regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|254698813|ref|ZP_05160641.1| polar differentiation response regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254699848|ref|ZP_05161676.1| polar differentiation response regulator [Brucella suis bv. 5 str.
           513]
 gi|254702986|ref|ZP_05164814.1| polar differentiation response regulator [Brucella suis bv. 3 str.
           686]
 gi|254705892|ref|ZP_05167720.1| polar differentiation response regulator [Brucella pinnipedialis
           M163/99/10]
 gi|254711120|ref|ZP_05172931.1| polar differentiation response regulator [Brucella pinnipedialis
           B2/94]
 gi|254712421|ref|ZP_05174232.1| polar differentiation response regulator [Brucella ceti M644/93/1]
 gi|254715493|ref|ZP_05177304.1| polar differentiation response regulator [Brucella ceti M13/05/1]
 gi|254720403|ref|ZP_05182214.1| polar differentiation response regulator [Brucella sp. 83/13]
 gi|254732260|ref|ZP_05190838.1| polar differentiation response regulator [Brucella abortus bv. 4
           str. 292]
 gi|256015389|ref|YP_003105398.1| polar differentiation response regulator [Brucella microti CCM
           4915]
 gi|256029501|ref|ZP_05443115.1| polar differentiation response regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256043508|ref|ZP_05446435.1| polar differentiation response regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256059196|ref|ZP_05449402.1| polar differentiation response regulator [Brucella neotomae 5K33]
 gi|256111465|ref|ZP_05452485.1| polar differentiation response regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|256157696|ref|ZP_05455614.1| polar differentiation response regulator [Brucella ceti M490/95/1]
 gi|256253332|ref|ZP_05458868.1| polar differentiation response regulator [Brucella ceti B1/94]
 gi|256256214|ref|ZP_05461750.1| polar differentiation response regulator [Brucella abortus bv. 9
           str. C68]
 gi|256262462|ref|ZP_05464994.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|260167408|ref|ZP_05754219.1| polar differentiation response regulator [Brucella sp. F5/99]
 gi|260544768|ref|ZP_05820589.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564703|ref|ZP_05835188.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260568101|ref|ZP_05838570.1| response regulator receiver [Brucella suis bv. 4 str. 40]
 gi|260756625|ref|ZP_05868973.1| response regulator receiver protein [Brucella abortus bv. 6 str.
           870]
 gi|260760055|ref|ZP_05872403.1| response regulator receiver protein [Brucella abortus bv. 4 str.
           292]
 gi|260763294|ref|ZP_05875626.1| response regulator receiver protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882442|ref|ZP_05894056.1| response regulator DivK [Brucella abortus bv. 9 str. C68]
 gi|261216064|ref|ZP_05930345.1| response regulator receiver protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|261217228|ref|ZP_05931509.1| response regulator DivK [Brucella ceti M13/05/1]
 gi|261220448|ref|ZP_05934729.1| response regulator DivK [Brucella ceti B1/94]
 gi|261313322|ref|ZP_05952519.1| response regulator DivK [Brucella pinnipedialis M163/99/10]
 gi|261318711|ref|ZP_05957908.1| response regulator DivK [Brucella pinnipedialis B2/94]
 gi|261320099|ref|ZP_05959296.1| response regulator DivK [Brucella ceti M644/93/1]
 gi|261323145|ref|ZP_05962342.1| response regulator DivK [Brucella neotomae 5K33]
 gi|261750321|ref|ZP_05994030.1| response regulator DivK [Brucella suis bv. 5 str. 513]
 gi|261753595|ref|ZP_05997304.1| response regulator DivK [Brucella suis bv. 3 str. 686]
 gi|261756818|ref|ZP_06000527.1| response regulator receiver [Brucella sp. F5/99]
 gi|265985421|ref|ZP_06098156.1| response regulator DivK [Brucella sp. 83/13]
 gi|265986509|ref|ZP_06099066.1| response regulator DivK [Brucella pinnipedialis M292/94/1]
 gi|265989926|ref|ZP_06102483.1| response regulator DivK [Brucella melitensis bv. 1 str. Rev.1]
 gi|265992969|ref|ZP_06105526.1| response regulator DivK [Brucella melitensis bv. 3 str. Ether]
 gi|265996201|ref|ZP_06108758.1| response regulator DivK [Brucella ceti M490/95/1]
 gi|294853591|ref|ZP_06794263.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297249571|ref|ZP_06933272.1| polar-differentiation response regulator divK [Brucella abortus bv.
           5 str. B3196]
 gi|306839020|ref|ZP_07471841.1| response regulator receiver protein [Brucella sp. NF 2653]
 gi|306845945|ref|ZP_07478512.1| response regulator receiver protein [Brucella sp. BO1]
 gi|81320204|sp|Q7BBW0|DIVK_BRUAB RecName: Full=Polar-differentiation response regulator divK
 gi|81751298|sp|Q8FW53|DIVK_BRUSU RecName: Full=Polar-differentiation response regulator divK
 gi|81850387|sp|Q8YC73|DIVK_BRUME RecName: Full=Polar-differentiation response regulator divK
 gi|123545928|sp|Q2YKN1|DIVK_BRUA2 RecName: Full=Polar-differentiation response regulator divK
 gi|223635106|sp|B2SB45|DIVK_BRUA1 RecName: Full=Polar-differentiation response regulator divK
 gi|223635107|sp|A9MBQ2|DIVK_BRUC2 RecName: Full=Polar-differentiation response regulator divK
 gi|223635113|sp|A9WYT1|DIVK_BRUSI RecName: Full=Polar-differentiation response regulator divK
 gi|223635147|sp|A5VUU3|DIVK_BRUO2 RecName: Full=Polar-differentiation response regulator divK
 gi|19223931|gb|AAL86375.1|AF411569_1 response regulator DivK [Brucella abortus]
 gi|17984842|gb|AAL53901.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23463973|gb|AAN33801.1| polar differentiation response regulator [Brucella suis 1330]
 gi|62197725|gb|AAX76024.1| DivK, polar differentiation response regulator [Brucella abortus
           bv. 1 str. 9-941]
 gi|82939786|emb|CAJ12794.1| Response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|161337485|gb|ABX63789.1| Hypothetical protein BCAN_B0613 [Brucella canis ATCC 23365]
 gi|163675487|gb|ABY39597.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021361|gb|ACD74082.1| Response regulator receiver [Brucella abortus S19]
 gi|225615598|gb|EEH12647.1| two component response regulator [Brucella ceti str. Cudo]
 gi|225642503|gb|ACO02416.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237787893|gb|EEP62109.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|255998049|gb|ACU49736.1| polar differentiation response regulator [Brucella microti CCM
           4915]
 gi|260098039|gb|EEW81913.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260152346|gb|EEW87439.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260154766|gb|EEW89847.1| response regulator receiver [Brucella suis bv. 4 str. 40]
 gi|260670373|gb|EEX57313.1| response regulator receiver protein [Brucella abortus bv. 4 str.
           292]
 gi|260673715|gb|EEX60536.1| response regulator receiver protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676733|gb|EEX63554.1| response regulator receiver protein [Brucella abortus bv. 6 str.
           870]
 gi|260871970|gb|EEX79039.1| response regulator DivK [Brucella abortus bv. 9 str. C68]
 gi|260917671|gb|EEX84532.1| response regulator receiver protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919032|gb|EEX85685.1| response regulator DivK [Brucella ceti B1/94]
 gi|260922317|gb|EEX88885.1| response regulator DivK [Brucella ceti M13/05/1]
 gi|261292789|gb|EEX96285.1| response regulator DivK [Brucella ceti M644/93/1]
 gi|261297934|gb|EEY01431.1| response regulator DivK [Brucella pinnipedialis B2/94]
 gi|261299125|gb|EEY02622.1| response regulator DivK [Brucella neotomae 5K33]
 gi|261302348|gb|EEY05845.1| response regulator DivK [Brucella pinnipedialis M163/99/10]
 gi|261736802|gb|EEY24798.1| response regulator receiver [Brucella sp. F5/99]
 gi|261740074|gb|EEY28000.1| response regulator DivK [Brucella suis bv. 5 str. 513]
 gi|261743348|gb|EEY31274.1| response regulator DivK [Brucella suis bv. 3 str. 686]
 gi|262550498|gb|EEZ06659.1| response regulator DivK [Brucella ceti M490/95/1]
 gi|262763839|gb|EEZ09871.1| response regulator DivK [Brucella melitensis bv. 3 str. Ether]
 gi|263000595|gb|EEZ13285.1| response regulator DivK [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092198|gb|EEZ16495.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|264658706|gb|EEZ28967.1| response regulator DivK [Brucella pinnipedialis M292/94/1]
 gi|264664013|gb|EEZ34274.1| response regulator DivK [Brucella sp. 83/13]
 gi|294819246|gb|EFG36246.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297173440|gb|EFH32804.1| polar-differentiation response regulator divK [Brucella abortus bv.
           5 str. B3196]
 gi|306273580|gb|EFM55425.1| response regulator receiver protein [Brucella sp. BO1]
 gi|306405926|gb|EFM62184.1| response regulator receiver protein [Brucella sp. NF 2653]
          Length = 123

 Score =  156 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 92/123 (74%), Positives = 110/123 (89%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K VMIVEDNELNMKLFRDLIE SGY  ++TR+G+EAL+LAR+H PD+I+MDIQL E+S
Sbjct: 1   MTKSVMIVEDNELNMKLFRDLIEASGYETIRTRSGLEALDLAREHHPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKDDEELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 227

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED +   +     +   GY      +G E L+ A +   DVI++D+ L +++G
Sbjct: 1   MKRILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLMLPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++++   +E PVI +TA     D       G + YI KP ++   +  ++    
Sbjct: 61  LEVCRRLRQE---KETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 241

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D      L    +  +GY  L   +G EAL LA   KPD++I+D+ L ++ G 
Sbjct: 10  ARLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPDMDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++      ++P++ +TA     D+    + G + Y++KP  L   +  I   +  
Sbjct: 70  TVTRKLRASGI--DMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 127


>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
 gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
          Length = 1761

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 76/121 (62%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V++VEDN++N ++  + +E  G +     NG  ALE       D+++MD Q+  + G 
Sbjct: 1421 KRVLLVEDNDMNQEVATEFLEQVGVVLSIAENGQVALEKLATQSFDLVLMDCQMPVMDGY 1480

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T+++++   L+++PVIA+TA AM GD+E   + G   +I+KPI ++    T+ +Y+G+
Sbjct: 1481 QATRELRKMPGLEKLPVIAMTANAMAGDKEMCLRVGMNDHIAKPIEVARLYSTLLQYLGD 1540

Query: 123  A 123
            +
Sbjct: 1541 S 1541



 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ +DN     + R  +E+ G+     ++G EA+E  +     V ++D  + E++G+E
Sbjct: 1280 RILVADDNATARDIMRTTLESMGFKVDAVKSGAEAIEHCQHTDYPVALIDWLMPEMNGIE 1339

Query: 64   ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I   S  +  P ++ V+A A     E++      +YI+KPIS S  ++ I   +G+
Sbjct: 1340 AAQKI--LSGKEHPPKILIVSAHANAEFIEQVEHSDIASYITKPISASRLLDGIMSSLGQ 1397


>gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
          Length = 229

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +L +D +E SG+      +G   L+ A +   D++I+D+ L    G
Sbjct: 1   MSKILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDYDLLILDLMLPGTDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+++E   ++  P+I V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKRVRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|104782644|ref|YP_609142.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95111631|emb|CAK16352.1| putative sensor histidine kinase/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 642

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N  +   ++ + GY      +G +A+E   Q +   ++MD +L  + G E
Sbjct: 515 RILLVEDNPVNQSVIEAMLRSLGYEVSLAIDGAQAVEQVGQQRFVAVLMDCRLPHVDGYE 574

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+   +  ++P+IA+TA A +GD ER    G   Y+SKP   +     +++++
Sbjct: 575 ATRRIRLLPQHADLPIIALTASAQQGDRERCLAAGMNDYLSKPFKRTDLQRILRRWL 631


>gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 230

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++I +DN   +K+ +  IE   +  +   +G EAL     + P ++++DI +  I 
Sbjct: 1   MDRNILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFDHYNPQLVLLDIMMPLID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+E S     P+I +TA +   D+      G + YI KP S    +  IK  +
Sbjct: 61  GIEVCNRIREKS---NTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|254247533|ref|ZP_04940854.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184]
 gi|124872309|gb|EAY64025.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184]
          Length = 256

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 16  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 75

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 76  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 133

Query: 121 GE 122
             
Sbjct: 134 RR 135


>gi|119513098|ref|ZP_01632151.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119462232|gb|EAW43216.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 378

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D   N+ L + ++E+ GY      +G+ AL+   +  PD+I++D+ +  I G E
Sbjct: 11  RILAVDDTRDNLILVQTILESEGYEIDLVADGLTALQQIEKSPPDLILLDVMMPGIDGYE 70

Query: 64  ITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+++ +     IP++ +TAF            G + +I KP      +  ++  + 
Sbjct: 71  VTRRIRKNPQFNASYIPILLITAFHQSS-VVEGLDAGADDFIRKPFDTDELLARVRSLLR 129


>gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 229

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 219

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED +   +     +    Y      +G + L+ A  H  D+II+D+ L  I+G
Sbjct: 1   MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYYDLIILDLMLPSING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++    Q  P+I +TA +   D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|320160493|ref|YP_004173717.1| putative two-component response regulator receiver protein
           [Anaerolinea thermophila UNI-1]
 gi|319994346|dbj|BAJ63117.1| putative two-component response regulator receiver protein
           [Anaerolinea thermophila UNI-1]
          Length = 363

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E+      DL+E  GY   +  +G +AL+L  Q+ PD+I+ D+++  + G
Sbjct: 1   MTRILVVEDEEMVRANIVDLLEAEGYETQEASDGEQALQLIWQNPPDLILCDVRMPRVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
                +I ++  L+ IP I +TA   + D+      G + YI+KP +    +  +++ +
Sbjct: 61  FTFLARISQEPRLRAIPFIFLTARVEREDQRLGMNLGADDYITKPFTRKDLLTAVQRRL 119


>gi|238921655|ref|YP_002935170.1| DNA-binding transcriptional regulator CpxR [Edwardsiella ictaluri
           93-146]
 gi|238871224|gb|ACR70935.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Edwardsiella ictaluri 93-146]
          Length = 232

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L++  G+  +   +G +AL +      D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAILDA-SIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|163850399|ref|YP_001638442.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|188580174|ref|YP_001923619.1| response regulator receiver protein [Methylobacterium populi BJ001]
 gi|240137476|ref|YP_002961947.1| putative response regulator receiver [Methylobacterium extorquens
           AM1]
 gi|254559653|ref|YP_003066748.1| response regulator receiver [Methylobacterium extorquens DM4]
 gi|163662004|gb|ABY29371.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|179343672|gb|ACB79084.1| response regulator receiver protein [Methylobacterium populi BJ001]
 gi|240007444|gb|ACS38670.1| putative response regulator receiver [Methylobacterium extorquens
           AM1]
 gi|254266931|emb|CAX22730.1| putative response regulator receiver [Methylobacterium extorquens
           DM4]
          Length = 126

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 83/122 (68%), Positives = 106/122 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  L+T NG+EA+ELAR H PD+I+MDIQL E+S
Sbjct: 1   MKKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARAHHPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D +L+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T+++YI
Sbjct: 61  GLEVTKWLKDDDDLRNIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRRYI 120

Query: 121 GE 122
           G+
Sbjct: 121 GD 122


>gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241]
 gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241]
          Length = 229

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|332524525|ref|ZP_08400732.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107841|gb|EGJ09065.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 663

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED+ +N ++   L+  +G       +G++ALE   +   D+++MD+Q+  + GL
Sbjct: 534 RTVLLVEDDAVNREVTSCLLAEAGLAVELAEDGLQALECVARRSYDLVLMDMQMPGLDGL 593

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+++++     ++PV+A+TA A   D  R    G + +I+KP+  +   E +   +
Sbjct: 594 EATRRLRQLPRGHDVPVVALTANAFAEDRGRCLAAGMDDFITKPVDPARLFEAVLARL 651


>gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D +  +K  +  +E          +G EALELA+  + D+I++D+ L +I G
Sbjct: 8   MSRVLVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLMLPKIDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + +QI+E      +P+I +TA     D+    + G + YI+KP ++      +K  + 
Sbjct: 68  LSVCRQIRE---FSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D  L    
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 61  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I +D +    L +  +E   Y      +G  AL L  ++K D+ I+D+ + +I G+E
Sbjct: 11  RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGIE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E +    +P++ +TA   + D+      G + YI+KP S++  +  +K  +  
Sbjct: 71  VCRKLREKT---NVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126


>gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEIDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 231

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D     +  ++ ++ SG+      N  E  ++ +   PD++I DI + ++ 
Sbjct: 1   MSAQLLLVDDEPGLREAVKEYLQESGFKVQTASNAREGWDMMQHSIPDLVISDIMMPQVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    KQ+++D+  Q +PV+ +TA  M GD  +  + G +AY++KP      +  ++  +
Sbjct: 61  GYHFLKQMRDDARFQALPVVFLTAKGMTGDRIQGYQAGVDAYLAKPFDPDELVAIVENLL 120


>gi|32491287|ref|NP_871541.1| DNA-binding transcriptional regulator CpxR [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166494|dbj|BAC24684.1| cpxR [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 231

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D++  + L ++L+E  G+      NG +AL        D++++DI + + +G
Sbjct: 1   MNKLLLVDDDKELISLLKELLEKEGFEIQVAYNGEQALSKLND-TIDLLLLDIIMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K+I+++   Q +P+I +TA   + D+    + G + YISKP +    +  IK  + 
Sbjct: 60  IDTLKEIRKNK--QHLPIIMLTARGSELDKIIGLELGADDYISKPFNKRELVARIKAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|317129755|ref|YP_004096037.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 230

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D +   KL R  +    Y+  +  NG EA++       D+I++DI + E+ 
Sbjct: 1   MNDRILLVDDEQEMRKLLRVCLTPYSYLLDEASNGEEAIDKISADFYDLILLDIMMPEVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++E  + +  PVI +TA           K G + Y+ KP         ++  I
Sbjct: 61  GFELLKTLREHLDNK-TPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVI 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 238

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED E+     +D  E   Y      +G EA+      +P +I++D+ L + SG E
Sbjct: 5   RILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I++  +  E  +I +TA   +  +      G + Y++KP S+   +  +K ++  
Sbjct: 65  VCRIIRK--KHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRR 121


>gi|298528058|ref|ZP_07015462.1| response regulator receiver protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511710|gb|EFI35612.1| response regulator receiver protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 378

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 70/116 (60%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+ LN ++ R ++  +GY   +  +G++A E+AR+H PD+I++D+ +    G + 
Sbjct: 12  ILIVDDSPLNRRMLRVVLNKAGYRIQEAEDGLQAREMAREHLPDLILLDVMMPHEDGFDT 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K+ S  Q+IP+I ++A     +  +  + G   YISKP + +  M  I+ ++
Sbjct: 72  CIKLKKQSSTQDIPIIFISALNDTENIVKGLELGGVDYISKPFAQTEVMARIRVHL 127


>gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E         +   G+       G +ALE+  ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++  S    +PVI +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRELRARS---NVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|262195404|ref|YP_003266613.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262078751|gb|ACY14720.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 395

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+DN  N+    + +E  G+  L   +G EAL  A    PD+I++D+ +  I G +
Sbjct: 22  TVLIVDDNPENLGFLFEYLEECGFKVLVALDGEEALSYATHALPDMILLDVMMPGIDGFD 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IG 121
              ++K   E ++ PVI ++A +   D+ R  + G   Y++KPI+    +  I  +  + 
Sbjct: 82  TCARLKTMPEARDTPVIFMSALSDPQDKLRAFELGGVDYVTKPINKEEVLARINAHVSLR 141

Query: 122 E 122
            
Sbjct: 142 R 142


>gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ D++I+DI + + +
Sbjct: 12  MNKNILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 71

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 72  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 128

Query: 121 GEA 123
             +
Sbjct: 129 RRS 131


>gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M KK +MI++D    ++L    ++  GY  +   +  +AL+  ++   D+ I+DI L  +
Sbjct: 1   MAKKTIMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQELKEKDVDMFIVDIMLPNM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E  + I+   + +  PVI ++A   + D+    + G + YI KP S+   +  I+  
Sbjct: 61  DGFEFVRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAV 120

Query: 120 IGE 122
              
Sbjct: 121 FRR 123


>gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
 gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
          Length = 241

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      +  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDARLRSLLERYLNEQGFQVRVASDAEQMDRLLTRENYHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K++++ +    IPVI +TA   + D     + G + Y++KP +    +  I+  +  
Sbjct: 67  ICKRLRQTNNT--IPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRR 123


>gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D      + R+  E  GY   +  +GMEA+E+ +    D+I+MDI +  + G
Sbjct: 1   MAKILAVDDEAKIRTIIREYAEFEGYEVAEAADGMEAVEMVKNDDFDIIVMDIMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+I++   +++IPVI ++A   + D+    + G + Y+ KP S    M  ++  + 
Sbjct: 61  YSACKEIQK---IKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLN 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 238

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++V+D+     + R  +E  G     + +G +AL  A +  PD++++D+ +  + 
Sbjct: 7   MGRYVLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALATAEEEPPDLVVLDLMMPGLD 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++      L  +PV+ +TA   + D     + G + Y++KP S    +  I+  +
Sbjct: 67  GIEVCRR--LRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVL 124

Query: 121 GEA 123
             A
Sbjct: 125 RRA 127


>gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
 gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I +D +    L +  +E   Y      +G  AL L  ++K D+ I+D+ + +I G+E
Sbjct: 11  RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGIE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E +    +P++ +TA   + D+      G + YI+KP S++  +  +K  +  
Sbjct: 71  VCRKLREKT---NVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126


>gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41]
 gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+++++D+     L    +E  G   ++  + ++ LE  + +  D+II+DI + ++ 
Sbjct: 1   MIPKILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDVDLIILDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++   +I+E+   + +P+I ++A +   D+ +    G + Y+SKP +    +  +K  +
Sbjct: 61  GIQACLKIREE---KSMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|163792858|ref|ZP_02186834.1| diguanylate cyclase [alpha proteobacterium BAL199]
 gi|159181504|gb|EDP66016.1| diguanylate cyclase [alpha proteobacterium BAL199]
          Length = 377

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    + +  +  L   NG EAL +  +  PD++++D+ +  + 
Sbjct: 1   MPGRVLVVDDILPNVKLLEAKLSSEYFDVLTASNGPEALAVIERENPDIVLLDVMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++IK D     +PV+ VTA +   D  R  + G + +++KP+  S      +  +
Sbjct: 61  GFEVCRRIKADPRTTHLPVVMVTALSDVADRVRGIEAGADDFLTKPVVDSALFARFRSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 93.3 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 47/113 (41%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++I+EDN ++     + +        +  +G    E A +  PD++I  + L++   
Sbjct: 154 SARLLIIEDNAIDAFNMIESLSVDNGEVKRVASGRAGFEAATRQDPDLVICSLNLEDDDA 213

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
           L +  Q + +   + +P++ V          +    G   Y+ KP+  +  + 
Sbjct: 214 LRLLSQFRANEATRHLPILMVGEEDQTDKLAKALDLGANDYLMKPVDRNELLA 266


>gi|71905882|ref|YP_283469.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71845503|gb|AAZ44999.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 1005

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 64/118 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN +N ++  +L++  G       +G +A+ELA  +  D+I+MDIQ+  + G+E
Sbjct: 660 RVLLAEDNPINQEVALELLKDVGLRVDIAEDGRQAVELAAANDYDLILMDIQMPNMDGIE 719

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T  I+   +    P++A+TA A   D +     G   +I+KP+      E + ++I 
Sbjct: 720 ATHAIRHLPQRTATPILAMTANAFNEDRDACLGAGMNDHIAKPVDPQKLYEALLRWIR 777



 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQEI 59
           +++++D+   ++    +++          +G   L      LA     D+++ D  +  +
Sbjct: 515 ILLIDDDPNALEAISHMLKAYDARITTADSGEAGLNCVHSALAEGRHFDLVLTDWAMPGM 574

Query: 60  SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPI 107
            G+E +++I+E   L + P ++ VTA+  +   ER+R+ G    I+KP+
Sbjct: 575 DGIETSRRIREI--LPQAPRIVLVTAYGREWPMERLREAGIVYQINKPV 621


>gi|332882310|ref|ZP_08449938.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679694|gb|EGJ52663.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 230

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ ED +      R  ++  G+      +G  A  + ++   D++++D+ + ++ G
Sbjct: 6   MAKILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQKGVFDLLVLDVIMPKMDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q +   E    P I +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 66  LEVCRQFR-LKEGYHTPAIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|330876995|gb|EGH11144.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 783

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE       D+++MD  +  + G 
Sbjct: 660 ARVLLVEDNPVNQLVAKGILSKLGCEVIISSHGGEALEQLEHGHFDLVLMDCNMPVMDGY 719

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP  L+     + ++I
Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRLTELAGILDQWI 777


>gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 988

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 73/116 (62%), Gaps = 2/116 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN++N  +  ++++  G       NG+EA+++AR    DVI+MDIQ+ E+ G+E
Sbjct: 873 RVLLAEDNDINQIVATEILKMKGIAVDVASNGLEAVDMARSGAYDVILMDIQMPELDGIE 932

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I+    L +IP+IA+TA  MKGD E+  + G + +I+KPI        +++ 
Sbjct: 933 ATRRIRAF--LPDIPIIAMTAHTMKGDAEKCLEAGMQDHIAKPIDPETLFAALQRA 986


>gi|312622039|ref|YP_004023652.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202506|gb|ADQ45833.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 234

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M    V IV+D +  ++L  + +   GY      NG   L+   + +PD++I+DI L +I
Sbjct: 1   MSAYTVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G EI K+I+++SE   +P+I ++A   + D+    + G + YI KP SLS     IKK 
Sbjct: 61  DGYEICKRIRKNSE---VPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|300868140|ref|ZP_07112774.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillatoria sp. PCC 6506]
 gi|300333875|emb|CBN57954.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillatoria sp. PCC 6506]
          Length = 440

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M KK  V+IV+DN  N+ +  DL++ + +     ++G  A+E      PD+I++DI +  
Sbjct: 5   MEKKDIVLIVDDNSNNLGVLYDLLDNASFEVWVAQDGESAIEKVGYALPDLILLDIMMPG 64

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G E   ++K +    +IPVI ++A +   D+ +    G   YI+KP      +  +K 
Sbjct: 65  IDGFETCNRLKANPLTADIPVIFMSAMSESIDKVKGLSLGAVDYITKPFQQEEVLARVKL 124

Query: 119 YI 120
           ++
Sbjct: 125 HL 126


>gi|228983785|ref|ZP_04143982.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775980|gb|EEM24349.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EA++L  Q   D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEAIKLIEQKDFDIILLDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
          Length = 225

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|224535689|ref|ZP_03676228.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522699|gb|EEF91804.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1113

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++++IVEDN+       + +    Y+     NG EALE+  + KPD+++ DI + E+SG
Sbjct: 843 SRRILIVEDNDDLRIYLVNTL-GEDYLVQSCHNGKEALEILSEFKPDLVLSDIMMPEMSG 901

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   IK + E   IPV+ +TA   + +     K G + Y++KP S+SI   +I + I
Sbjct: 902 DELCAAIKGNIETSHIPVLLLTALGDEKNMLEGLKIGADDYMAKPFSISILKASINRLI 960


>gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 247

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED        +  +E+ G+    +  G  ALE+  Q +  ++++DI L +++G E
Sbjct: 6   RILVVEDEPSIADTLQYSLESEGFAVQISGTGASALEILGQEEFALVVLDIGLPDMTGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++     + +PVI +TA + + D     + G + Y+ KP S       ++  +  
Sbjct: 66  VCRQVRTS---KNVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRR 121


>gi|110633700|ref|YP_673908.1| response regulator receiver protein [Mesorhizobium sp. BNC1]
 gi|110284684|gb|ABG62743.1| response regulator receiver protein [Chelativorans sp. BNC1]
          Length = 123

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 93/123 (75%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKVMIVEDNELNMKLFRDLIE SGY  ++TR+G++AL+LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MPKKVMIVEDNELNMKLFRDLIEASGYETVRTRDGLQALDLARRHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED EL  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKEDDELHSIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVQSFIETIKSYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|303248282|ref|ZP_07334544.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490307|gb|EFL50219.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 825

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 71/119 (59%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N ++ R+++E  G +      G EA+E+AR    D ++MD+Q+  + GL  
Sbjct: 320 ILLVEDNSINQQVAREMLERFGAVVDVAGGGREAVEMARLAFYDAVLMDVQMPVMDGLAA 379

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           T+ I+      ++P++A+TA A+ GD +R  + G   Y++KPI  +  +  + ++I  A
Sbjct: 380 TRAIRRLPGCGDLPIVALTAHALSGDRQRCLEAGMNDYLTKPIDPARLLAALGQWIAPA 438



 Score =  114 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 61/129 (47%), Gaps = 12/129 (9%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58
           KV++V+D +LN  +F  ++ ++G+  +   NG +A      + A     D I+MDI++ E
Sbjct: 588 KVLLVDDAKLNRAIFSQILRSAGHEVVTAVNGKDACRALFGQKASGRPFDCILMDIEMPE 647

Query: 59  ISGLEITKQIKED-------SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           + G   T+ I++            +IP++A+T+     +  R  + G +  + K      
Sbjct: 648 LDGPAATRIIRKLLADGVSPPCPPDIPIMALTSHDAAPELARGLEAGMDGCLRKVFEYEE 707

Query: 112 FMETIKKYI 120
            +  + + +
Sbjct: 708 LLAALGRVM 716


>gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
 gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
          Length = 1381

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 57/116 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ +DN    +    L+ ++G+      +G  AL+ AR H PD+++ D+ +  + GL
Sbjct: 630 ARVLVADDNADMREYLTRLLRSAGHEVQAVADGRAALDAARAHTPDLVVSDVMMPRLDGL 689

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++   ++ D      PV+ ++A A +       + G + Y+ KP   +  +  ++ 
Sbjct: 690 QLVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRA 745


>gi|227823949|ref|YP_002827922.1| putative two-component sensor protein/histidine protein kinase
           [Sinorhizobium fredii NGR234]
 gi|227342951|gb|ACP27169.1| putative two-component sensor protein/histidine protein kinase
           [Sinorhizobium fredii NGR234]
          Length = 123

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 69/119 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VEDNE+N  +    +   G+  L   NG + +E+A   +PD+I+MD+ L  + G
Sbjct: 1   MTRILLVEDNEMNRDMLSRRLSRRGFDVLIAENGKDGVEIAASERPDLILMDMSLPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+QIK +     IPVIA+TA AM  D +     GC+ Y SKPI L   +  I++ +
Sbjct: 61  WEATRQIKANPVTCGIPVIALTAHAMASDRDMALDAGCDDYDSKPIDLPQLVRKIEQLL 119


>gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 225

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           KV++V+D     KL  D +   GY  L+  +G  AL++  +     +II+D+ + ++ G 
Sbjct: 5   KVLVVDDESRMRKLVSDFLTKQGYEVLEAGDGEAALDIFYKDKDIQLIILDVMMPKLDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++DS+   IP+I +TA   + DE    + G + YISKP S  I +  ++  +  
Sbjct: 65  GVCREIRKDSK---IPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121


>gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
 gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
          Length = 237

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ +D +    L    +   GY  ++ ++G EAL++      D++++DI + +++G+E
Sbjct: 10  KILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDIIENEDVDLLVLDIMMPKVNGIE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++++   + +P++ ++A +   D+ +    G + Y++KP +   F   +K  +  +
Sbjct: 70  VCKKVRQN---KNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRS 126


>gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++V+D     ++    +    Y+ L+  NG EAL   R+   D++I+D+ L ++ G
Sbjct: 1   MKTILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQAVDLVILDLMLPDMEG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+       +P++ +TA   +         G + YI KP      M  IK  + 
Sbjct: 61  ERVCQEIR---TFSSVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|310825369|ref|YP_003957727.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398441|gb|ADO75900.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1002

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +DN       R L+E+  +      +G EAL  A    PD+++ D+ +  + G  
Sbjct: 633 HILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEARLPDLVLSDVMMPGMDGFA 691

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++ +       +P I ++A A +       + G + Y+ KP S    +  ++  +  A
Sbjct: 692 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRLA 751


>gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
 gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
          Length = 231

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59
           +K++++ ED ++        +E SGY  +   NG +AL+   + K   D+ ++DI +  I
Sbjct: 1   MKRILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGDFDIALLDIMMPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ K+++E S    I +I +TA   + D+ R    G + Y++KP S S  +  +   
Sbjct: 61  DGFEVCKRLRERSST--IGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAI 118

Query: 120 IGE 122
              
Sbjct: 119 HRR 121


>gi|297582644|ref|YP_003698424.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141101|gb|ADH97858.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+D    + L    +   G+  L+  +G  A+        D++I+D+ + +++G
Sbjct: 1   MATILIVDDETRMLDLVALYVAPYGHRVLKESDGEAAVNRVADEPVDLVILDVMMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+      ++P+I +TA   K D  +  + G + Y++KP      M  +   + 
Sbjct: 61  WEVCQDIRS---FSDVPIIMLTARDGKEDVVKGLRYGADDYVTKPFDEGELMARVDALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|160885580|ref|ZP_02066583.1| hypothetical protein BACOVA_03582 [Bacteroides ovatus ATCC 8483]
 gi|156109202|gb|EDO10947.1| hypothetical protein BACOVA_03582 [Bacteroides ovatus ATCC 8483]
          Length = 1459

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN        +++  + Y  L+  NG E L+ A+Q+ PD+II D+ +  + GL++
Sbjct: 1198 ILIVEDNNELRHFLWNILSET-YTVLEATNGKEGLKYAQQYIPDLIISDVMMPVMDGLDM 1256

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K IK D +   IP+I ++A +   D     + G + YI+KP S +     I   + +
Sbjct: 1257 VKAIKADHDTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTRILSLLRQ 1314


>gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 236

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG  AL+ AR+ +PD II+D+ +  + G 
Sbjct: 10  ARVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 70  GLLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 127

Query: 123 A 123
           +
Sbjct: 128 S 128


>gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 226

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D        R+  E  G+   +  +GMEA+ + R+   D IIMD+ + ++ G
Sbjct: 1   MSKILIVDDETNIRAGLREYAEFEGHEVTEAGDGMEAVTICREQDFDAIIMDVMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+I++    ++IPV+ ++A   + D+    + G + Y+ KP S    M  ++  I 
Sbjct: 61  FSACKEIRK---TKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVIIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 227

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+ IV+D+    ++    +E  G+  ++  +G+ AL   ++  P +II+D+ L  I G+
Sbjct: 5   KKIYIVDDDRNICEIISLYLEKEGFATVRIGDGVTALNKIKEELPLLIILDLMLPGIDGM 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K++++     ++P+I +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 65  TLCKEVRK---FTDVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRR 121


>gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 245

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED++      R  +   G+  ++  +G   LEL      DV+++D+ L +I G E
Sbjct: 20  RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++  S   ++P+I VTA     D     + G + Y++KP  +      I+  +  +
Sbjct: 80  CCRRLRRSS---DVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS 136


>gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++++ED +   K+ +  +E   Y   Q  +G E LE+      D++++D+ + +I
Sbjct: 1   MNKIKILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESEDIDLVLLDLMIPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG ++ K+I+  S    +PVI VTA   + D     K G + Y++KP S    M+ IK  
Sbjct: 61  SGEDLIKEIRNKS---NVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1964

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
            KKV+IV+D+  N+     L+E      +   NG   +   +     D+++MD+ +  + G
Sbjct: 1845 KKVLIVDDDVRNIFALTSLLERYQMQVIPAENGAAGIACLQNSTDIDLVLMDVMMPGMDG 1904

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  K I++  + Q +P+IA+TA AMKGD ++    G   YI+KP+     +  ++ ++
Sbjct: 1905 YETMKAIRKLQQFQSLPIIALTAKAMKGDRDKCLDAGASDYITKPVDTEQLLSILRVWL 1963



 Score = 87.9 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IV+D+    +L  ++    G+  L       AL + ++++P  + +DI L   SG  I
Sbjct: 1578 ILIVDDDLNFARLVLEIARGQGFKGLIALRSSTALAMLQKYQPCAVTLDICLPGDSGWTI 1637

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKYIG 121
              +IK D +   IP I ++      D +R +K G  +Y  KP++    ++    +K++I 
Sbjct: 1638 LDRIKHDPKTVHIPGIIMSVNN---DRQRGQKLGAYSYYQKPLTRENLVKIMAGLKQFIE 1694

Query: 122  E 122
             
Sbjct: 1695 R 1695


>gi|209523400|ref|ZP_03271955.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
 gi|209496142|gb|EDZ96442.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
          Length = 438

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++ V+D   N+ L  DL+   GY      +G  A+ELA  + PD++++DI + +++G E
Sbjct: 7   HILWVDDEPANLVLLEDLLMAEGYDTTLAESGPRAIELATNNPPDLVLLDIMMPDMNGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  +++E   LQ  P+I +TA   +    +  +   + YI+KPI++ + +  I   I
Sbjct: 67  VCDRLREHDILQTTPIIFLTALDDEESRLKGLEKMGDDYITKPINIKLLLAKIHNII 123


>gi|254415604|ref|ZP_05029363.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177554|gb|EDX72559.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1156

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+ +N  +  + ++  GY      NG EAL   +    D++ MD Q+  + G E
Sbjct: 819 KILLVDDHPINQTVIVNQLQMLGYQPECASNGSEALAKLQAQSYDIVFMDCQMPVLDGYE 878

Query: 64  ITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+++ +++   +   VIA+TA A++ D E+    G + ++SKP         I+++
Sbjct: 879 ATRELRRQEGSNRHTIVIALTASALESDREKCLAVGMDDFLSKPFDQDTLQAMIERW 935



 Score = 65.5 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 11  NELNMKLFRDLIETSGYIALQTRNG---MEALELA--RQHKPDVIIMDIQLQEISGLEIT 65
           N    +  R  +E  G    +  +    M+AL  A  R H  DV I+D+QL    G  I 
Sbjct: 679 NATTRQTVRSHLEAWGMQIDEATDSTSTMDALRNAVSRCHPYDVAILDLQLPGSQGESIV 738

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             I+ +  L    +I +T        + +       Y++KP+  S   E++   +
Sbjct: 739 PMIRCNPSLASTKLIVITTMHQLDTVQELESMEILGYLTKPMKASQLWESLLAAV 793


>gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 477

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 62/117 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+  N+K+   ++    Y   +  NG  AL  A    PD+I++DI + E+ G ++
Sbjct: 13  ILIVDDHPENLKILTQMLSQKNYKLRKAINGEMALNAAFSKPPDLILLDIVMPEMDGYQV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + IKE+    EIPVI ++A     ++ +  + G   YI+KP  +   +  ++  + 
Sbjct: 73  CQHIKENPITSEIPVIFISALDEAFNKVKAFEMGGVDYITKPFQIKEVLARVQLQLR 129


>gi|71908504|ref|YP_286091.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848125|gb|AAZ47621.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 858

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 66/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++VED  +N  + ++ ++ +G       NG +ALELA     D+I+MD+Q+  + GL
Sbjct: 736 AKILLVEDEPVNQAIAKEFLQGAGLNVTLANNGRKALELAESRAFDLILMDMQMPVMDGL 795

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + T+QI+      E+P+IA+TA A   D  +    G   +I KP+   +F   + K++
Sbjct: 796 QATRQIRALPGYSEVPIIAMTANAFTEDRTKCLLAGMNDFICKPVEPEVFFSMLLKWL 853



 Score = 77.1 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           ++ ++ +D ++   +   L+   G       +G  A+   ++         ++++D+ + 
Sbjct: 589 RRALVADDLQITQMVHCHLLRQLGLSPEAVVSGPAAIAAIQKADAENDPFSILLLDLLMP 648

Query: 58  EISGLEITKQIKEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
              G++   +I++ S L   P+  + TA          R  G    + KPI+ SI    +
Sbjct: 649 GQGGMDTLAKIQKLS-LNRPPICMLVTASGDSSIAISARAAGFADVLVKPINQSILKAAL 707

Query: 117 K 117
            
Sbjct: 708 A 708


>gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 225

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 61/118 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++++D+   + L +D +E  GY  +   NG EALE+     PD+II D+ + E+ G 
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEHDVPDMIICDVMMPEMDGY 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +Q++++     IPV+ ++A     D  +    G + Y+ KP      +  ++  +
Sbjct: 80  TFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 137


>gi|330963168|gb|EGH63428.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 705

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D+     L   L++  GY  L   +G +AL +  +  PD+I++DI +  + G 
Sbjct: 6   ATILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDERAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+   +K       IP+I ++A   +G      + G E Y+SKP+  +     ++  + 
Sbjct: 66  EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLR 124


>gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
 gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++VED E   ++    +   GY   +  +G   LE A   K D++++DI L ++S
Sbjct: 1   MAEKILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++ +S   ++PVI +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  GMEVLRRLRRES---DLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAAL 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|299147450|ref|ZP_07040515.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298514728|gb|EFI38612.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1459

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN        +++  + Y  L+  NG E L+ A+Q+ PD+II D+ +  + GL++
Sbjct: 1198 ILIVEDNNELRHFLWNILSET-YTVLEAANGKEGLKYAQQYIPDLIISDVMMPVMDGLDM 1256

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K IK D     IP+I ++A +   D     + G + YI+KP S +     I   + +
Sbjct: 1257 VKAIKADHNTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTRILSLLRQ 1314


>gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D    ++  +  +   GY      +G EALE   +H+PD+I++D+ L  ISGL
Sbjct: 6   ARILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRHRPDLILLDLGLPGISGL 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++E S    +P+I ++    + D+ +    G + Y+SKP  L+  +  ++  +  
Sbjct: 66  EVCRKVREQS---NLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALRH 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 220

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+E   +L +  + T  YI     +G+E ++   +H  D+I++D+ +  ++
Sbjct: 1   MNYHILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+   I+  S    IP+I +TA   + D+ +    G + YI+KP S  +F+  ++  +
Sbjct: 61  GFEVANIIRNQS---NIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 222

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+++ED E    + +  +E + + AL   +G   + + + +  D++++D+ L ++SG
Sbjct: 1   MAKVLVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPDMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K I+E S+   IPV+ +TA + + D     + G + Y+ KP S    +  IK  + 
Sbjct: 61  WNVLKTIRESSK---IPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILS 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|315919226|ref|ZP_07915466.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693101|gb|EFS29936.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1381

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K V++VEDNE      +  +E   Y  L+  NG +A E+  +  PD+++ DI +  I GL
Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1178

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+   IK + +   IPVI +TA  M    +     G + Y+ KP ++ + +  I   + +
Sbjct: 1179 ELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1238


>gi|260170896|ref|ZP_05757308.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2]
          Length = 1381

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K V++VEDNE      +  +E   Y  L+  NG +A E+  +  PD+++ DI +  I GL
Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1178

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+   IK + +   IPVI +TA  M    +     G + Y+ KP ++ + +  I   + +
Sbjct: 1179 ELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1238


>gi|284040223|ref|YP_003390153.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819516|gb|ADB41354.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 236

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    +L ++ +   GY   +  +G + L+L    K D+ I D+ + +  G
Sbjct: 1   MATILLVEDDPNLGQLVQEYLTMKGYPTDRAIDGNQGLQLFMAGKYDLCIFDVMMPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K+++ D   +++P+I +TA +M+ D  +  K G + Y++KP S+   +  I+  + 
Sbjct: 61  FTLAKEVRMD--HRDVPIIFLTAKSMQEDTIQGFKAGADDYMTKPFSMEELLLRIQAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
 gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
          Length = 243

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 6/126 (4%)

Query: 1   MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M K     +++V+D     +L    +  +GY      +G EA+E+  + +PD+II+D+ L
Sbjct: 1   MSKPIEATIVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVML 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I G  +T++I+++    + PV+ +TA     D+      G + Y++KP SL   +  I
Sbjct: 61  PDIDGFTVTRRIRQEGI--DAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 118

Query: 117 KKYIGE 122
           +  +  
Sbjct: 119 RAILRR 124


>gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 226

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL RD +   G+  ++  +G EA++    Q    ++++D+ + ++ G 
Sbjct: 5   KILVVDDEARMRKLVRDFLTNKGFTVIEAGDGEEAVDTFFAQKDIALVLLDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K I++     ++PVI +TA + + DE +    G + YISKP S  I +  +   +  
Sbjct: 65  EVLKTIRK---YSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|209525497|ref|ZP_03274036.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209493996|gb|EDZ94312.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 598

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L   ++   GY   +  +G  ALE      PD+I++DI + +I G  +
Sbjct: 14  ILIVDDTPGNLHLLSRILRKKGYQVREAIDGKTALEEVNNKLPDLILLDIMMPDIDGYTV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             Q+K D    E+P+I ++A     D+ +  + G   YISKP      +  +K  +
Sbjct: 74  CNQLKSDPNTAEVPIIFLSALDDIFDKVKAFESGGVDYISKPFQFQEVLIRVKNQL 129


>gi|119944737|ref|YP_942417.1| response regulator receiver modulated diguanylate cyclase
           [Psychromonas ingrahamii 37]
 gi|119863341|gb|ABM02818.1| response regulator receiver modulated diguanylate cyclase
           [Psychromonas ingrahamii 37]
          Length = 322

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV+IV+D + N+K+  DL++   Y      NG +ALELA+   PD+I++DI + E+ G 
Sbjct: 7   QKVLIVDDIKDNIKVLIDLLKPE-YKTFFATNGEKALELAQNMSPDIILLDIVMPEMDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K +    +IPVI ++A +  GDE +  + G   YI+KPIS +I    +K ++
Sbjct: 66  EVCQKLKSNPITCDIPVIFISAMSDIGDETKGLEVGAVDYITKPISPAIVKARVKNHL 123


>gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 230

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  V++ +D++         ++  GY  ++  +G++AL+    ++  +II+DI +  +
Sbjct: 1   MTKLTVLVTDDDQDIRDGIEIYLKNEGYHVIKAADGLDALKKLENNEVHLIILDIMMPNM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+  T +I+E+   + IP+I ++A A  GD+      G + Y++KP      +  +K  
Sbjct: 61  DGITATFKIREE---RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1]
 gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
 gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 243

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L R  +   G+  +   +G     +  +   ++I++D+ +    GL 
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVELIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 70  ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126


>gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED     +L RD +E+ GY A     G   L  A   + D+II+D+ L    G
Sbjct: 1   MKTILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLMLPNTDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++I+++    +IP+I ++A   + D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICRRIRQE---ADIPIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 232

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED+       R L+E  GY   +  +G E L+       D++I+DI +  ISG
Sbjct: 1   MNKLLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQKFDS-TFDLLIIDIMMPNISG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ ++I+E S    +P++ +TA +++ D+      G + Y+ KP S    +  I+  I 
Sbjct: 60  IDVCRKIREKS---YVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 956

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDNELN ++  +L++  G       NG EA+E  +  + D+++MD+Q+  + GL
Sbjct: 617 ARVLLVEDNELNQEVATELLQGVGVEVAVAHNGQEAVEQVQAGRFDLVLMDMQMPVMDGL 676

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ I+ D  L  +P+IA+TA AM  D E     G   +++KPI       ++  ++
Sbjct: 677 TATRTIRRDEALSGLPIIAMTANAMASDREACLAAGMNDHLAKPIEPEHLFASLLHWL 734



 Score = 88.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           K+V++V+DN+    L + +++    +A     G  AL+   +        +++ +D Q+ 
Sbjct: 470 KRVLVVDDNDSARTLLQTMLQDLNLVAEAVDAGPAALDAVYKSAQAGQPFEIVFLDWQMP 529

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            +SG+E+ ++++         ++ VT +  +         G +  + KP+S S+  +++ 
Sbjct: 530 GMSGVELAQRLQALPLEVTPRLVLVTGYGREEVLSSAEAAGIQTVLVKPVSASMLFDSVA 589

Query: 118 K 118
           +
Sbjct: 590 R 590


>gi|224540766|ref|ZP_03681305.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224517633|gb|EEF86738.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1377

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + V++VED+E         +    Y+  +  NG EAL     H PD+II D+ + E+ GL
Sbjct: 1135 RHVLVVEDDEEIRHYICRELSNDFYM-TECSNGKEALASILSHTPDLIISDVMMPEMDGL 1193

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + ++I+++  +  +P+I +TA   + D       G +AY+ KP S+ +  +T+   I  
Sbjct: 1194 TLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNLIRR 1253


>gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 233

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +  +  +E S +      N  E  EL +Q  P+V+I DI + ++ G +
Sbjct: 7   KILLVDDEPGLRESVQAYLEDSDFEVRVASNAQEGWELLQQEIPNVLISDIMMPQVDGYQ 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-GE 122
             KQ++ED+  Q +PV+ +TA  M  D  +  + G +AY+ KP      +  +   I   
Sbjct: 67  FLKQVREDARFQALPVVFLTARGMTSDRIQGYQAGADAYLPKPFDPEELVAIVTSLIERR 126

Query: 123 A 123
           A
Sbjct: 127 A 127


>gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 229

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 239

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++V+D +   K+  D +   G+ +    +G  AL L  + + D++++D+ +  + G
Sbjct: 5   TQRILVVDDEKELAKMICDYLSAMGFTSESASDGPRALRLIGEKEWDLLVLDVMMPGLDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++ D   + +P+I +TA A + D     + G + Y++KP S+      I+  + 
Sbjct: 65  FDVARKVRAD---RGLPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLR 121

Query: 122 EA 123
            +
Sbjct: 122 RS 123


>gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED+    +L +D     GY A    +G + L+ A     D+II+DIQL  +SG
Sbjct: 1   MTRILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K I+E     ++P++ V+A   + D+ R    G + +++KP S +  +   K ++ 
Sbjct: 61  FEICKTIRERL---DVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
 gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
          Length = 233

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59
           +K++++VED +   +     ++ +GY  ++  +G  AL+   ++    DV I+DI +  I
Sbjct: 1   MKRILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K++++ S    + +I +TA   + D+      G + Y++KP S S  +  +   
Sbjct: 61  DGLTVCKELRKKSG--NLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSL 118

Query: 120 IGE 122
              
Sbjct: 119 YRR 121


>gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium
           sticklandii DSM 519]
 gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium
           sticklandii]
          Length = 230

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I+ED E   ++    ++  GY  L   +G+E L L R   PD++I D+ +  I 
Sbjct: 1   MSFKILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALFRDSNPDLVISDVMMPTID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+    + ++PVI +TA   + D  +  + G + Y++KP S    +  +   +
Sbjct: 61  GLEVLREIR---LISDVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVML 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T17]
          Length = 289

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +   G+      +G  A+        D +++D+ L  I G E
Sbjct: 2   RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++        PV+ +TA     D      GG + Y++KP +L      ++     
Sbjct: 62  VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 118


>gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 225

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    ++L    +   GY  +   +G EA+          I++DI ++++ G E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMRKMDGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I VTA     D  +  K G + Y++KP         I+  +  
Sbjct: 64  CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118


>gi|44004551|ref|NP_982220.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|190015016|ref|YP_001966750.1| DNA-binding response regulator [Bacillus cereus]
 gi|190015282|ref|YP_001967074.1| DNA-binding response regulator [Bacillus cereus]
 gi|218848201|ref|YP_002455136.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|296506624|ref|YP_003667858.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
 gi|42741617|gb|AAS45062.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|116584692|gb|ABK00807.1| DNA-binding response regulator [Bacillus cereus]
 gi|116584963|gb|ABK01072.1| DNA-binding response regulator [Bacillus cereus]
 gi|218540252|gb|ACK92648.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|296327211|gb|ADH10138.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
          Length = 227

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    + L    +   GY  ++  +G EA+ L    +  ++++DI + E++G E 
Sbjct: 4   ILLVDDEPRMLDLLSLYLTPRGYHCIKATSGKEAISLVEAKEFRLLLLDIMMPEMNGWET 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+E      +P+I +TA     D  +  K G + Y++KP      +  I+  +  
Sbjct: 64  CNKIRE---FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRR 118


>gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
 gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
          Length = 1969

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 76/120 (63%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++ EDN LN ++  +++E+ G       +G+EA+ELARQH  D+I+MDIQ+  + GL
Sbjct: 1617 QHLLLAEDNPLNQEVALEMLESLGLNVEVVEDGLEAVELARQHDFDLILMDIQMPVMDGL 1676

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E T++I+     +  P++A+TA A + D++   + G  A+I+KP+   +  + + +++ E
Sbjct: 1677 EATRRIRTLPGCKNTPILAMTANAFEEDQKNCSEAGMNAHIAKPVDPELLYKMLLEWLPE 1736



 Score = 80.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
            +V++ +D+   +++   ++            G+EA+             ++++MD ++ +
Sbjct: 1473 RVLVADDHPEALEILVYMLTQLQCSVTAVSGGLEAVGAVSMADHTHTPFELVLMDWEMPK 1532

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             +GL+  + I  +       +I ++   +K  E  ++K G   +I+KPI+      ++++
Sbjct: 1533 TNGLDAAQLILSEKLTAPPKLILISGTHLKNSEI-LKKYGFIGFIAKPITPVSLKTSLEE 1591

Query: 119  YIGE 122
             + +
Sbjct: 1592 ILNQ 1595


>gi|329889207|ref|ZP_08267550.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328844508|gb|EGF94072.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 453

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N++L    +    Y  L   +G  A+ LA   +PD+I++D+ +  + 
Sbjct: 1   MSARILVVDDVEANVRLLEAKLTLEYYDVLTCHDGATAIALAGAEQPDLILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++IK  ++ + IPV+ VTA   + D  +  + G + ++SKP+   I M  ++   
Sbjct: 61  GFETCRRIKAAADTRHIPVVLVTALDGRHDRIKGLEAGADDFLSKPLDDVILMARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+DN L  ++    +    +  L   +    LE AR    D++I++I  +   GL 
Sbjct: 155 RVLIVDDNTLQAQVMAQELSRE-HRPLIEPSAEAGLETAR-GPVDLVIVNITSERFDGLR 212

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  Q++     + +P++AV       D     +  + G    + +PI        ++  +
Sbjct: 213 LIAQLRSKEPTRRLPILAV---VDTQDRPRLLKALELGAHDLLIRPIDPEELAARVRTQV 269

Query: 121 GE 122
             
Sbjct: 270 RR 271


>gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 238

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++VED+E    L R  ++  GY  +   +G +AL    +   D +I+D+ L  + 
Sbjct: 1   MAKTILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI ++I++    + +PVI ++A   +       + G + Y++KP SL   +  +K   
Sbjct: 61  GLEICRRIRQM--TRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALF 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|121605101|ref|YP_982430.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594070|gb|ABM37509.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 242

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   +V+IVED     +L +  ++  G+I +   + + A        PDVI++D  L  
Sbjct: 1   MKHLPRVLIVEDEPAIAELIQVNLKHGGFIPVLAYDSVAAQRELDTMLPDVILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SGL + +  ++    + IP++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  QSGLSLARLWRKQERTRSIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
 gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
          Length = 239

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           K++++V+D      L    +   G+        G EAL   +++ PDV+I+DI L ++ G
Sbjct: 7   KRILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAACKENAPDVVILDIMLPDMDG 66

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + I+E       PV+ ++A     D+      G + YI+KP S    +  +K  + 
Sbjct: 67  IEVCRAIRE---FSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLR 123

Query: 122 E 122
            
Sbjct: 124 R 124


>gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +   +L    ++  GY  ++  NG+E LE+      D+II+DI + ++ G+E
Sbjct: 5   TILVVDDEKEIRELIEIFLKNEGYTVVKATNGVETLEILENTIVDLIILDIMMPKMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               I+++   + +P+I ++A     D+      G + Y+ KP +    +  +K  +  
Sbjct: 65  ACLNIRKN---RNMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRR 120


>gi|256396664|ref|YP_003118228.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362890|gb|ACU76387.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 273

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED     +     +   G+      +G  A+  A++H PD+I++D+ L    G
Sbjct: 1   MTSILVVEDEPTLAEAIAARLRAEGFATHLAGDGPAAVRTAQEHLPDLIVLDVMLPGFDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+ +   + +PV+ VTA   + D     + G + Y++KP S+   +  +   + 
Sbjct: 61  LEVCRRIQAE---RAVPVLMVTARDDESDLIEGLRTGADDYLTKPFSMRELIARVHALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|212213466|ref|YP_002304402.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011876|gb|ACJ19257.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
          Length = 245

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L    +   G+ A   +NG E   +  +   D++I+DI +    GL 
Sbjct: 6   HILIVDDDSDIRDLLGKFLRRHGFEASLAKNGSEMQAILLKQAVDLVILDIMMPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ +S    IP++ +TA + + D     + G + Y+SKP +    +  ++  +  +
Sbjct: 66  LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122


>gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 231

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K   +++V+D     +  +  +E    +      +  +A E+ +++ PD++I DI + 
Sbjct: 1   MSKQANILLVDDEPGVRESVQAYLEYADDFQVQVASHANQAWEILQKNPPDLVISDIMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G +  K++++D   + IPV+ +TA  M  D  +    GC+AY+SKP         +K
Sbjct: 61  EVDGYQFLKKLRDDPRYEAIPVVFLTARGMTTDRIQGYNAGCDAYLSKPFDPEELEAIVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 NLLER 125


>gi|144897363|emb|CAM74227.1| two-component transcriptional regulator, winged helix family
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 243

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L    +   G      R+G E  +L   H  D++++D+ +    GL 
Sbjct: 6   HILVVDDDHEIRDLLARFLAKHGLHVSTARDGAEMTKLLDAHGIDLVVLDLMMPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +T++++       +P+I +TA A   D     + G + Y+ KP +    +  IK  +  A
Sbjct: 66  LTRRLRAQGCT--LPIIMLTAMAEDTDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRA 123


>gi|75908369|ref|YP_322665.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75702094|gb|ABA21770.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 443

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+++  + +  +G+      +G +ALE  +   PD+I++D+ +  + G E 
Sbjct: 11  ILVVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQSRVPDLILLDVMMPVMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K +K   E  +IPVI +TA      +      G   YI+KP   +  +  I  ++
Sbjct: 71  CKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISAHL 126


>gi|332881353|ref|ZP_08449003.1| response regulator receiver domain protein [Capnocytophaga sp. oral
            taxon 329 str. F0087]
 gi|332680729|gb|EGJ53676.1| response regulator receiver domain protein [Capnocytophaga sp. oral
            taxon 329 str. F0087]
          Length = 1328

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVED E      ++ +    +I     NG EAL++ R+   D++I D+ + E++G E+
Sbjct: 1056 ILIVEDEESIRNFMKERLSPL-FIVETASNGKEALDIIRKEHIDLVISDVMMPEMNGYEL 1114

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               IK D  L  IP+I +TA      + +  K G EAYI KP S       I   +
Sbjct: 1115 CTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLL 1170


>gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 248

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL+    ++ D++I+DI + + +
Sbjct: 18  MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 77

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 78  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 134

Query: 121 GEA 123
             +
Sbjct: 135 RRS 137


>gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
 gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
          Length = 227

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   GY  L+  +GMEA+E+   +    +II+D+ +  + G 
Sbjct: 5   KILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYDEKDIALIILDVMMPRMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +++++ S+   +P+I +TA + + DE +    G + YISKP S  I +  +   +  
Sbjct: 65  QVCREVRQSSK---VPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRR 121

Query: 123 A 123
           A
Sbjct: 122 A 122


>gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA
           regulates genes involved in folding/degrading
           periplasmic proteins OmpR family protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila]
 gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 230

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL+       D++++DI +   +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALQYIDS-SIDLLLLDIMMPRKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K++++     + PVI +TA     D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IETLKELRQ---YHQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1]
 gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 243

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L R  +   G+  +   +G     +  +   D+I++D+ +    GL 
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 70  ICRRLRSAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126


>gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 842

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 74/117 (63%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDNE+N  L  +L++  G+     ++G +ALE+  + + D+++MD+Q+ ++ G E
Sbjct: 718 RILLAEDNEINRFLAVELLKGLGHEVTTVQDGRQALEILSKERFDLVLMDVQMPQMHGDE 777

Query: 64  ITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +T++I+        +P++A+TA+A+KGD ER    G + Y+SKPI +      +K+ 
Sbjct: 778 VTRRIRAGEAGDPHVPIVALTAYALKGDRERFLAAGMDDYLSKPIDMQELERVLKRI 834


>gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 231

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IV+D +    L    ++  G+   +   G EA++  R  + D+ I+DI L +I 
Sbjct: 1   MKKQILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMDCIRTTRLDLAILDIMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       PVI +TA     D+      G + YI KP +    +  +K  +
Sbjct: 61  GFTICQKIREKYFY---PVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
 gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
          Length = 231

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+   V+IVED    ++L      TSG    +  N  EA +     KPD+I++D  L + 
Sbjct: 1   MMTTSVLIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAKPDIILLDWMLPDC 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +GL+  ++++     + +PVI +TA   + D  R  + G + Y++KP S    +  I+  
Sbjct: 61  AGLDWLRELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAV 120

Query: 120 IGE 122
           I  
Sbjct: 121 IRR 123


>gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 229

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E        L+   G+ A     G +ALE   ++  D++++D+ L  +SG
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ+++ S    +PVI VTA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|198274925|ref|ZP_03207457.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135]
 gi|198272372|gb|EDY96641.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135]
          Length = 1373

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + V+I+EDN    +  RDL++   Y  L+  NG E +++A +  PD+++ D+ +  + G 
Sbjct: 1119 QTVLIIEDNTDMRRYLRDLMKKH-YRVLEAENGEEGVKVAVEQVPDLVLSDVMMPVMDGF 1177

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
                ++++  E   IP++ +TA A   D       G + Y+ KP +  + +  +   +
Sbjct: 1178 TCCAELRKRKETAHIPILLLTAKAEDKDSVEASYRGADDYVRKPFNPEVLLAKVAHLL 1235


>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 962

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED+    ++   +++   ++     +G   +E  RQ + D+I+MD+Q+  + G +
Sbjct: 841 RLLIAEDDATIRQVLAAMLQKLQFVVDFAEDGETVVEKWRQGEYDLILMDVQMPRLDGFQ 900

Query: 64  ITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            T+ I+  E  +   IP+IA+TA AMK D+ R    G + YISKPI+    +E +K
Sbjct: 901 ATRAIREQEQEQGARIPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKECIEKVK 956


>gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 228

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+E    L    +E   +  ++  N  EA+++  + + +++++DI + +I G+E 
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQIDGIEA 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++D   + +P+I ++A +   D+      G + YI+KP +    +  +K  +  
Sbjct: 65  CMRIRKD---KNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119


>gi|254251724|ref|ZP_04945042.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158]
 gi|124894333|gb|EAY68213.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158]
          Length = 256

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 16  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 75

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 76  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 133

Query: 121 GE 122
             
Sbjct: 134 RR 135


>gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain [Bradyrhizobium sp. BTAi1]
          Length = 1299

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +DN       R L+    Y      +G  ALE  R+ +PD+++ D+ +  + G  
Sbjct: 646 RVVLADDNPDMRDYVRRLLGQD-YEVEAVGDGGAALEAMRRRRPDLVLTDVMMPGMDGFG 704

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + + ++ D  L++IPV+ ++A A +  +      G   Y+SKP S    +  ++ 
Sbjct: 705 LLQAMRSDPRLRDIPVVMLSARAGEEAKVEGLDAGASDYLSKPFSARELLARVRA 759



 Score = 98.7 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 61/124 (49%), Gaps = 12/124 (9%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62
            V++VEDN    +    L+E  GY  +  R+G++AL +   +    D+++ D+ +  + G+
Sbjct: 1174 VLVVEDNPEIGEFSTQLLEDLGYRTVLARSGIDALRMLDDNPKRFDLVLSDVVMPGMDGV 1233

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY--ISKPISLSIFMETIKKYI 120
             + ++I+    L  IP++  + ++       +  GG   +  I KP S+      +++ +
Sbjct: 1234 TLGQEIRR--RLPTIPIVLNSGYSDV-----LADGGRHGFSLIHKPYSVDELSRVLRQVM 1286

Query: 121  -GEA 123
             G A
Sbjct: 1287 AGRA 1290


>gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
 gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens
            CN-32]
          Length = 1771

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 76/120 (63%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V++VEDNE+N+++  + +E  G I     NG  AL+   Q   D+++MD Q+  + G 
Sbjct: 1424 KRVLLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLSQQSYDLVLMDCQMPVMDGY 1483

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T  I++  EL  +PVIA+TA AM GD+E   + G   +I+KPI ++I  +T+ KY+G+
Sbjct: 1484 QATMAIRQRPELAHLPVIAMTANAMAGDKEMCLRAGMNGHIAKPIEVNILYQTLLKYLGD 1543



 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + R  +E+ G+     R G EA+    QH+  V ++D ++  + GLE 
Sbjct: 1284 VLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCIQHEYAVALIDWKMPSMDGLEA 1343

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +QI++ ++     ++ V+A A      +I + G   YISKPIS S  ++ I   +G A
Sbjct: 1344 ARQIQQQAKAAP-RILMVSAHANHEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRA 1401


>gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 231

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED +      R  +   GY+     +G E L  A++   D+I++D+ L  + G +
Sbjct: 2   KVLVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVMLPGMDGFQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++ S    +PVI ++A     D  R  + G + Y+ KP SL+  M  I      
Sbjct: 62  LLRELRKKSR---VPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARR 117


>gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
          Length = 223

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+M+V+D     +L R  ++ +G+  ++  N  EAL++      D+ ++DI +  + 
Sbjct: 1   MKSKIMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQYIDLAVVDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +Q+++    +E PVI +TA +   D+ R    G + Y++KP      M  +K  +
Sbjct: 61  GFELVEQMRQ---YREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110]
 gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 243

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+     L R  +   G+  +   +G     +  +   D+I++D+ +    GL 
Sbjct: 10  KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  ++    P+I +TA     D     + G + Y+ KP +    +  +   +  
Sbjct: 70  VCRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126


>gi|148979053|ref|ZP_01815298.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
 gi|145962026|gb|EDK27314.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
          Length = 1129

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 60/114 (52%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           I +D  +++++    ++  GY      +G E +EL  + KP+++++DI +  +SG ++ +
Sbjct: 727 IADDEPVSLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCE 786

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++  +  ++P+I +TA     D  R  + G   Y+SKP +       I  ++
Sbjct: 787 TLRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL 840


>gi|75763996|ref|ZP_00743615.1| Transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488517|gb|EAO52114.1| Transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 156

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D +   +L +  +E   Y   +  NG  ALE+A Q+  D+I++D+ +    G+E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 66  VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122


>gi|186682033|ref|YP_001865229.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464485|gb|ACC80286.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 421

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N+ +    + + G+      +G  A+  A +++P++I++D+Q+  I G E 
Sbjct: 10  ILIVDDNPTNLSVLCAALNSEGFRFRVAVDGETAIAQAERNQPELILLDVQMPGIDGFET 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +   Q IP+I  TA A    + +    G   YI KP +    +  ++ ++
Sbjct: 70  CRRLKANPATQNIPIIFTTALADTESKTKGFSLGAVDYIPKPFAQEEVIARVRVHL 125


>gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 222

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED     ++ RD +   G      R+G EALEL  +   D +++D+ +  + G
Sbjct: 1   MDRILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDYDAVVLDVLMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++  S    +P++ +TA   + +  R    G + Y++KP SL++ +  ++  I 
Sbjct: 61  FGVCRAVRRQS---SVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii]
 gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii]
          Length = 823

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60
           K+V++VEDN +N K+   L++  G++ +   +G+EA+E  +      D+++MDIQ+  + 
Sbjct: 689 KRVLLVEDNLVNQKVASRLLQKYGHVVITVTDGLEAVEALKSDHKAYDLVLMDIQMPGMD 748

Query: 61  GLEITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           GLE T++I++D   S   +IP+I +TA AMKG ++   + G + Y+ KP  +   + TI+
Sbjct: 749 GLEATRRIRKDELGSGWHKIPIIGLTANAMKGYQDICYEAGMDGYLPKPFDIKQVLSTIR 808


>gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 224

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    K+    +   G+  +   +G  AL    Q  PD++I+D+ L    G
Sbjct: 1   MAHILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + ++        P++ +TA   + D       G + Y++KP   +  +  ++  + 
Sbjct: 61  RDVCRALRLRHAT---PILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
 gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED     +  +  ++  GY   Q  +G E L+ A   K D+I++DI L +++G+E
Sbjct: 8   RILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKYDLILLDIMLPKLNGME 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   + +IP+I +TA     D       G + YI+KP ++   +  I+  +  
Sbjct: 68  VCRRIRQ---ISDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKR 123


>gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 228

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+E    L    +E   +  ++  N  EA+++  + + +++++DI + +I G+E 
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQIDGIEA 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++D   + +P+I ++A +   D+      G + YI+KP +    +  +K  +  
Sbjct: 65  CMRIRKD---KNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119


>gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 230

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D+   +KL    +   G+  +   +G EAL   +++  D II+DI +  + 
Sbjct: 1   MQKKILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCALKENHIDFIILDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + I++      +P++ ++A     D+    + G + Y++KP S+      I+   
Sbjct: 61  GLDVCRSIRKS---YNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANF 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|16264091|ref|NP_436883.1| putative histidine kinase protein [Sinorhizobium meliloti 1021]
 gi|307300056|ref|ZP_07579841.1| response regulator receiver protein [Sinorhizobium meliloti BL225C]
 gi|307316591|ref|ZP_07596034.1| response regulator receiver protein [Sinorhizobium meliloti AK83]
 gi|15140216|emb|CAC48743.1| putative two-component response regulator [Sinorhizobium meliloti
           1021]
 gi|306897789|gb|EFN28532.1| response regulator receiver protein [Sinorhizobium meliloti AK83]
 gi|306904945|gb|EFN35528.1| response regulator receiver protein [Sinorhizobium meliloti BL225C]
          Length = 121

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 69/119 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE+N  +    +   G+  L   NG   +ELA   KPD+I+MD+ L  + G
Sbjct: 1   MTKILLVEDNEMNRDMLSRRLSRRGFDVLIAENGRAGVELAESQKPDLILMDMSLPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T++IK +     IPVIA+TA AM  D E   + GC+ Y SKP+ L   +  I++ +
Sbjct: 61  WEATRRIKANPLTSAIPVIALTAHAMASDREMALEAGCDDYDSKPVDLPQLVRKIEQLL 119


>gi|255689849|ref|ZP_05413524.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260624453|gb|EEX47324.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1373

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  +   NG E  + A  H PD+I+ DI +  + G+ + 
Sbjct: 1115 LIVEDNEEIQKYIAESFSDS-FAVITADNGEEGKQQALSHIPDIIVSDIMMPIMDGITLC 1173

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED     IP+I +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1174 RQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1228


>gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
          Length = 245

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 1   MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M K     +++V+D     +L    +  +GY      +G EA+E+  + KPD+II+D+ L
Sbjct: 1   MSKATEATIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I G  +T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I
Sbjct: 61  PDIDGFTVTRRIRQEGITA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 118

Query: 117 KKYIGE 122
           +  +  
Sbjct: 119 RAILRR 124


>gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis]
          Length = 245

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 1   MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M K     +++V+D     +L    +  +GY      +G EA+E+  + KPD+II+D+ L
Sbjct: 1   MSKATEATIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I G  +T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I
Sbjct: 61  PDIDGFTVTRRIRQEGITA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 118

Query: 117 KKYIGE 122
           +  +  
Sbjct: 119 RAILRR 124


>gi|34557247|ref|NP_907062.1| two-component hybrid sensor and regulator [Wolinella succinogenes
           DSM 1740]
 gi|34482963|emb|CAE09962.1| TWO-COMPONENT HYBRID SENSOR AND REGULATOR [Wolinella succinogenes]
          Length = 372

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++ V+D E+N+ +   +++   Y  +   +G EALE+ +  K D+I++DI + E+ G 
Sbjct: 6   ATILAVDDTEVNVDILMGILK--NYDVIPALSGKEALEIVKNEKIDLILLDIMMPEMDGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K +   + IP+I +TA   + D +   + G   Y++KP +    +  +  ++
Sbjct: 64  EVCRRLKSEEATRSIPIIFITAKTTESDIKEGFERGAVDYVTKPFNPIELISRVDTHL 121


>gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 236

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L    +   G+     ++  E  E  +    D+II+DI L   SGL+
Sbjct: 6   HILIVDDDAEIRRLAGKFLREHGHKVTTAQDAREMREAMKAGPVDLIILDIMLPGASGLD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+       +P+I +TA     D     + G + Y+SKP +    +  I   +  
Sbjct: 66  LCRDIR---RTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVLRR 121


>gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium
           resistens DSM 45100]
          Length = 231

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ +D++   +  R  +  +GY  +   +G EALE+    +PD+ I+D+ +    GLE
Sbjct: 2   KILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVMMPRRDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   +  +IP++ +TA     +       G + Y+ KP +L   +   +     A
Sbjct: 62  VCRELRSHGD--DIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRA 119


>gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
          Length = 242

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 55/119 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G +  E A+   PD+II D+ +   +G  
Sbjct: 16  RILLVDDEPGLRAAVKTFLEDEGFEIFIAVDGEDGWEKAKTIFPDLIISDVMMPRANGYA 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ED +L   PVI +TA  M  D       G + YISKP         +K  I  
Sbjct: 76  LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134


>gi|78061250|ref|YP_371158.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77969135|gb|ABB10514.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 246

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E   +     PD+I++D+ +    GL 
Sbjct: 6   HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLDDGAPDLIVLDLMMPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + + +PV+ +TA   + D     + G + Y++KP ++   +  I+  +  A
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124


>gi|56477307|ref|YP_158896.1| DNA-binding response regulator ColR [Aromatoleum aromaticum EbN1]
 gi|56313350|emb|CAI07995.1| DNA-binding response regulator ColR [Aromatoleum aromaticum EbN1]
          Length = 227

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN   +    D ++  GYI    ++G+  L LA   + D+I++DI L  + G +
Sbjct: 2   RILVIEDNRDILVNVLDYLQLKGYIVDCAQDGLSGLHLAVTEQYDLIVLDIMLPGVDGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED   ++ P+I +TA     D  R    G + Y+ KP +LS  +  I+  +  +
Sbjct: 62  VCKRLRED-AGRDTPIIMLTARDALDDRLRGLNAGADDYLIKPFALSELVARIEAILRRS 120


>gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D          ++   GY      NG    ELA     D++I+D  L  ISGLE
Sbjct: 2   RILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAYDLLILDWMLPHISGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I +Q++        PV+ +TA     D       G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQQMRSHDAT--TPVLFLTAKDTVDDRVMGLDAGADDYLVKPFELRELLARVRALLRRS 119


>gi|319652565|ref|ZP_08006680.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317395819|gb|EFV76542.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 223

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I++D     KL  D  E +GY  +  ++G EA+  A +  PD+I++DI + EI+G
Sbjct: 1   MKKILIIDDEADMRKLLADYFEVNGYHIMTAKDGNEAVRQAEKQ-PDIILLDINMPEING 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++I+        P++ +TA     D+    + G + YI KP S+      +  ++ 
Sbjct: 60  LDVCRKIRS---YVSCPILFLTARVEDADKISGFQAGGDDYIQKPFSIHELGARVDAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 267

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY     ++G  AL+   Q   D++++D+ L  + G
Sbjct: 43  MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDG 102

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++       IP++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 103 LEVARRLRAGGHT--IPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 160

Query: 122 E 122
            
Sbjct: 161 R 161


>gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
 gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
          Length = 232

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           + ++  +I +D      L    +E  GY  ++  +G EA+ +      D++I+DI + ++
Sbjct: 1   MNRISILIADDEVEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+QI+       +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRQIRAQ---YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
 gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
          Length = 239

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 3/116 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED++      R  +E  GY  +    G  ALE A   +PD++I+DI L  + G
Sbjct: 1   MPTILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFARPDLVILDIMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            ++ +Q++E S    +P++ +TA   + D     + G + Y++KP S+   +  +K
Sbjct: 61  FQVCRQLREQS---TVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVK 113


>gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
 gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
          Length = 1343

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++I EDN    +   + +  S Y  LQ  NG EAL + ++   D+I+ D+ +  + GL+
Sbjct: 1098 TILIAEDNTDIRQYLCEELGKS-YHILQASNGEEALAILKEQDTDLILTDVMMPVMDGLQ 1156

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + KQIK+      IPVI ++A     ++    + G + YI KP S+++    IK    
Sbjct: 1157 LCKQIKQSLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMAMVAAKIKNLFR 1214


>gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 235

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L +  ++  G+     ++G  AL+  R   PDV+++DI +  + GL 
Sbjct: 11  RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDGLG 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K++++D    + P + +TA     D+      G + Y++KP SL   +  I   +  +
Sbjct: 71  LLKRLRQDGI--DAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRS 128


>gi|330962179|gb|EGH62439.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 705

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 58/119 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D+     L   L++   Y  L   +G  ALE+   H PD+I++DI +  + G 
Sbjct: 6   ATILIVDDDVHVRDLLEVLLQNQNYRTLTAESGEVALEMVELHAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K +     IP+I ++A   +       + G E Y++KP+  S     ++  + 
Sbjct: 66  EVASQLKANKSTANIPIIMLSALDQQSARLSGLEAGAEEYLNKPVDSSELWLRVRNLLR 124


>gi|309791916|ref|ZP_07686398.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308226034|gb|EFO79780.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 484

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 60/116 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++++DN     +  DL+    Y      NG E L+LA QH+PD++++D+ +  + G  
Sbjct: 5   TILLIDDNPQIHSIISDLLRPLDYQIFAALNGQEGLDLAHQHRPDLVLLDVMMPGMDGFA 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + + ++ D++L ++PVI +TA   +G   R  + G + +I KP         +   
Sbjct: 65  VCQALRSDAQLSKVPVIMITALDDRGSRLRGFESGADDFIGKPFDTIELRARVATV 120


>gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +   +L    + + GY   +  N M+ L++  +++  ++++DI +  + G+E+
Sbjct: 7   ILVVDDEKEIAELVEIYLVSDGYKVFKANNAMDGLDILDKNEIHLVLLDIMMPGMDGMEM 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      IP+I ++A +   D+      G + Y++KP +       +K  +  
Sbjct: 67  CRKIRE---TNNIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLRR 121


>gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
 gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
          Length = 228

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           + +VED+E   +L    ++  G+      N  EA    +   PD+I++DI L ++ GLE 
Sbjct: 4   IYVVEDDEDINELLVYNLKKEGFSVRSFLNSKEAYRNIKSDYPDLIVLDIMLPDMDGLEF 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K +K D + +EIP+I +TA + + D+    + G + Y++KP S+   +  IK  +  +
Sbjct: 64  CKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVLKRS 122


>gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 234

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 229

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++++D +    L    +   GY   +  +  +ALE  + ++ D+ ++D+ + EIS
Sbjct: 1   MQTKILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNNRVDLALLDVMMPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI + I+E       PVI +TA     D+ +    G + YI+KP +    +  +K  +
Sbjct: 61  GFEICRIIREKYMF---PVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|115376893|ref|ZP_01464114.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366072|gb|EAU65086.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 986

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +DN       R L+E+  +      +G EAL  A    PD+++ D+ +  + G  
Sbjct: 617 HILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEARLPDLVLSDVMMPGMDGFA 675

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++ +       +P I ++A A +       + G + Y+ KP S    +  ++  +  A
Sbjct: 676 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRLA 735


>gi|113476325|ref|YP_722386.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167373|gb|ABG51913.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1119

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
            V+IV+D  +N+++ R+ +    Y   +  NG+EALE+  +   PD+I++D+ +  ++G 
Sbjct: 717 TVLIVDDEPVNLQVIRNNLALQNYAITEANNGIEALEMIEKGLMPDLILLDVMMPHMTGY 776

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ K+++E     E+P+I +TA  +  D       G   Y+ KP S    +  IK +I 
Sbjct: 777 EVAKKLREKYLHIELPIIMLTAKPLVSDLVEGFVSGANDYLIKPFSKQELLARIKIHIR 835


>gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 221

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I+ED        +  +E  GY      +G + +EL R  KPD+I++D  L ++ G
Sbjct: 1   MQHILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ K I+++     IP++ +TA     D     + G   YI KP S    +E IK +  
Sbjct: 61  IDVCKAIRQEDI--NIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERIKIHFR 118

Query: 122 EA 123
            +
Sbjct: 119 NS 120


>gi|313682761|ref|YP_004060499.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155621|gb|ADR34299.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 428

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
           +K++IV+D  LN+ +  +++    Y  L   NG +AL++     KPD+I++DI +  ++G
Sbjct: 7   QKILIVDDEPLNISIVAEILNHE-YDLLVATNGEKALQIVSLDPKPDLILLDIMMPGMNG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ K++KE  E  +IP+I +TA        +  + G   ++SKP      +  IK  +
Sbjct: 66  FEVAKRLKEIPETFQIPIIFLTAKHDSESIIKGFEAGAVDFVSKPFQKEELLARIKNTL 124


>gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 227

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V +VED E    L R  +E  G+       G EA    ++  PD++I+D  L  +S
Sbjct: 1   MIPRVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +P+I +TA   + +  R    G + Y+ KP S    +  +K  +
Sbjct: 61  GIELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAML 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040153|gb|ACT56949.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 123

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS
Sbjct: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI
Sbjct: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120

Query: 121 GEA 123
           GEA
Sbjct: 121 GEA 123


>gi|330950940|gb|EGH51200.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 709

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G  AL + +Q  PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGEMALAMVKQQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K +     IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVATQLKAEKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 225

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +K  V+++ED +   +     +   GY      +G+  L   R+  PD++I+D+ L  
Sbjct: 1   MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ ++I++       P+I +TA     D+      G + Y+ KP S+   +  ++ 
Sbjct: 61  LDGLEVARRIRK---TSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRA 117

Query: 119 YIGE 122
           ++  
Sbjct: 118 HLRR 121


>gi|315500124|ref|YP_004088927.1| response regulator receiver modulated diguanylate cyclase
           [Asticcacaulis excentricus CB 48]
 gi|315418136|gb|ADU14776.1| response regulator receiver modulated diguanylate cyclase
           [Asticcacaulis excentricus CB 48]
          Length = 454

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 69/121 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++V+D   N++L +  +E   Y  +   +G EA+E A   +PD+I++D+ +  + 
Sbjct: 1   MTAKVLVVDDIPANVRLLQAKLEADYYDVVTAHSGQEAIETAIIEQPDIILLDVMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T+Q+KE +E + IP+I VTA   + D     + G + +++KP+   I    +K  +
Sbjct: 61  GYEVTRQLKELAETRHIPIILVTALDGRDDRLSGLEAGADDFLTKPLDDVILFARLKALV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 58.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++D     +     +    +      +   AL++A   + D++++++  ++   L  
Sbjct: 157 VLILDDQVRQAERLMVALGEQ-HRCAYETDPKAALKIAL-GRVDLLVLNLAARDFDPLRF 214

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++     +++PV+ +     +    +  + G    + +P+ +   +   +  I  
Sbjct: 215 VAHLRSSELTRQLPVLGLFNPDERPTLLKGLELGVSDVLPRPVDIQELLARARGQIRR 272


>gi|94263964|ref|ZP_01287766.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455636|gb|EAT05818.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 302

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++ V+D+ +N+K+  D++    Y  +    G +AL +A    PD+I++DI + E+ G 
Sbjct: 8   ATILAVDDSPMNIKILHDILNQD-YRVIFATGGADALTIAADSLPDLILLDIMMPEMDGY 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K D   Q IP+I VTA   + DE +  + G   YI+KP++ ++    +K ++
Sbjct: 67  EVCRRLKADPRTQRIPIIFVTAMTEREDEAKGLELGAIDYITKPVNQAVVKARVKNHL 124


>gi|13471003|ref|NP_102572.1| response regulator [Mesorhizobium loti MAFF303099]
 gi|14021746|dbj|BAB48358.1| response regulator [Mesorhizobium loti MAFF303099]
          Length = 123

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 94/123 (76%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKVMIVEDNELNMKLFRDLIE SGY  ++TRNG+EAL+LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MPKKVMIVEDNELNMKLFRDLIEASGYETVRTRNGLEALDLARKHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED +L  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKEDDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+IVED +    + +  +E   Y A+ T NG EA+++ +Q   D +I+D+ L  +SG 
Sbjct: 6   KRVLIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQSFDFVILDLMLPGLSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI  +I+  S   ++P++ +TA   + D+      G + Y++KP S    M  ++  +  
Sbjct: 66  EICNRIRLQS---DVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRR 122


>gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 222

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  D ++ +GY+ +   +G+ AL   ++ +PD+I++D  +  + G E 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGISALLRIQRRRPDLILLDAMMPGMDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +QIK+  +   IPV+ +TA           + G   Y++KPI  +  +  +  ++  A
Sbjct: 73  CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVTKPIQCNEMIARVASHLRTA 131


>gi|327405721|ref|YP_004346559.1| integral membrane sensor hybrid histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327321229|gb|AEA45721.1| integral membrane sensor hybrid histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 1052

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED E   K   + +    Y  ++  NG++ +E+A+++ PD++I D+ + E++G+E+
Sbjct: 804 VLVVEDQEQLRKFICECLGDQ-YRYMEAENGIQGVEMAKEYLPDILISDVMMPEMNGVEL 862

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             ++K +     IP+I +TA + + D+E   + G + Y++KP S++     ++  + 
Sbjct: 863 CGELKNNDLTSHIPIILLTAKSDQEDKEVGLEIGADDYLTKPFSVAELKLRVRNILR 919


>gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
 gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
          Length = 230

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED     +  R  +E SGY     R+G+E +   ++ + D+I++DI L +I G
Sbjct: 1   MSKILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRYDLILLDIMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+++S    IPVI +TA + + ++ R      + YI+KP S+ + +  I   + 
Sbjct: 61  FAVCELIRKES---NIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 683

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N  L   L+E +G+       G E L    + + D+++MD+Q+ E+ G+ 
Sbjct: 379 RILLAEDNPVNRILAVRLLEKAGHTVAVAGTGREVLVTLEREQFDLVMMDVQMPEMDGIS 438

Query: 64  ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T  I+E        +P++A+TA AM GD ER    G + Y+SKPI      E I +   
Sbjct: 439 ATAAIRERERGSGAHLPILALTAHAMNGDRERCLAAGMDDYLSKPIQAKALYEAIARLCA 498

Query: 122 EA 123
            A
Sbjct: 499 RA 500


>gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +E   +  L+  +G EA+++   +    ++I+D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+++S+   +P+I +TA   + DE    + G + YISKP S  I +  ++  +  
Sbjct: 65  EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121


>gi|255523233|ref|ZP_05390204.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296186196|ref|ZP_06854601.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255513101|gb|EET89370.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296049464|gb|EFG88893.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 779

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 74/115 (64%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED++LN ++   +++  GY+     NG+EA+++    K D+I+MDIQ+  ++G+E 
Sbjct: 544 ILLVEDDKLNQQVIGRMLKERGYLVDIAGNGLEAIKMYENKKYDIILMDIQMPVMNGIET 603

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           TK I+E      IP+IA+TA+A+KGD+E+    G + YI KP+ +      I+ +
Sbjct: 604 TKIIREKEIENHIPIIAITAYALKGDKEKFLSKGMDDYIPKPVKMDKLFNVIESH 658


>gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL    + K D++I+DI +  + G +
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALRKIDEVKVDMVILDIMMPNMDGFD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 67  VCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|146298307|ref|YP_001192898.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146152725|gb|ABQ03579.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 227

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K   K+++V+D    +++    +   GY  +   NG +A+  A++  P++IIMD+ + 
Sbjct: 1   MKKTQTKILLVDDEPDILEIVGYNLAQEGYQIVTASNGKDAIAKAQKELPELIIMDVMMA 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ G+E  + I++  EL  + +  +TA +    +      G + YI+KPI   + +  +K
Sbjct: 61  EMDGMEACEHIRKIPELNNVIITFLTARSEDYSQVAGFDAGADDYITKPIKPKLLVSKVK 120

Query: 118 KYIGE 122
             +  
Sbjct: 121 ALLRR 125


>gi|222054285|ref|YP_002536647.1| response regulator receiver modulated serine phosphatase [Geobacter
           sp. FRC-32]
 gi|221563574|gb|ACM19546.1| response regulator receiver modulated serine phosphatase [Geobacter
           sp. FRC-32]
          Length = 383

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           ++++V+D   N++L  +++  S Y  +   NG  AL  A     PD+I++DI + ++ G 
Sbjct: 5   RILLVDDTPENLELLAEILGES-YATISAGNGEAALVAASTQPLPDLILLDINMPDMDGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ +++KED  L+EIPVI ++      D+ +  K G   YI+KP         +  ++ 
Sbjct: 64  EVCRRLKEDPLLREIPVIFLSGLDATQDKVKAFKAGGVDYITKPFQFDEMQARVTTHVR 122


>gi|327470410|gb|EGF15866.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 234

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++      +IPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKMRA--SFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|149908632|ref|ZP_01897294.1| transcriptional regulator CpxR [Moritella sp. PE36]
 gi|149808466|gb|EDM68403.1| transcriptional regulator CpxR [Moritella sp. PE36]
          Length = 288

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D+    +L  + +    +      +G   L   R ++ D++++D+ + +++G
Sbjct: 62  MTKLLLIDDDRELAELLAEFLSLEDFDVDMVHDGEAGLAAIRGNQYDMVLLDVMMPKLNG 121

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++ D+    IPV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 122 FEVLKKLRVDN---NIPVLMLTAKGDEIDRVLGLEMGADDYLPKPFSERELLARIRAVLR 178

Query: 122 E 122
            
Sbjct: 179 R 179


>gi|71909165|ref|YP_286752.1| response regulator receiver [Dechloromonas aromatica RCB]
 gi|71848786|gb|AAZ48282.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain [Dechloromonas aromatica RCB]
          Length = 384

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            +++V+D   N+ L   +++   Y   +  +G++AL + R    PD+I++DI + ++ G 
Sbjct: 12  TILVVDDTPFNLTLMSAVLKKH-YNVKEASSGIDALTMIRSGPLPDLILLDIMMPKMDGY 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +QIK D     +PVI +TA     DEE+    G   YI+KPI   + +  IK ++
Sbjct: 71  EVCRQIKADPATANVPVIFLTANVSSDDEEKGFALGAVDYITKPIRQRVVLARIKTHL 128


>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
 gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
          Length = 1235

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 70/118 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IV+D+ LN ++  + +   G       NG +AL++  Q+  D+++MD+Q+  + GL
Sbjct: 879 KKVLIVDDSILNREVASEFLLDVGIQVSTANNGQQALDMINQYHYDLVLMDVQMPVMDGL 938

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             TKQ++++   +++P+IA+TA A   D  R    G   +++KPI   +   T+ ++I
Sbjct: 939 TATKQLRKNPLHKQLPIIAMTAHASADDYRRSLDAGMNDHLNKPIDHQLLYLTVTRWI 996



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58
           + ++V+DN +  ++  D++ + G       +G   ++       +Q   DV+ +D  +  
Sbjct: 728 RALVVDDNAMAREVLADILTSLGLEVTTVADGYAGIDELEKACSKQTPYDVVFLDWNIPG 787

Query: 59  ISGLEITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110
           I+G+E   +I +     +   ++ VTA+ +   E        +  ISKP+  S
Sbjct: 788 INGVETASKIERNVHITKPAAMLMVTAYDVDKFESDAHNVNIKKIISKPVDAS 840


>gi|330840625|ref|XP_003292313.1| hypothetical protein DICPUDRAFT_157014 [Dictyostelium purpureum]
 gi|325077455|gb|EGC31166.1| hypothetical protein DICPUDRAFT_157014 [Dictyostelium purpureum]
          Length = 1589

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 7/127 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57
            +KV++ EDN +N KL + L+   G+     ++G +AL+   + K      D I+MDIQ+ 
Sbjct: 1436 QKVLVAEDNTMNQKLIKTLLTKKGFDITIAKDGKQALDFYHESKVKSTLYDCILMDIQMP 1495

Query: 58   EISGLEITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             ++GLE T  I+E    E   IP+IAVTA AMKGD+E+  + G + Y++KPI+  +  E 
Sbjct: 1496 NLNGLEATSAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINPKLLYEV 1555

Query: 116  IKKYIGE 122
            I   IG+
Sbjct: 1556 INTQIGK 1562


>gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+   +   R  +E   Y      NG +AL+   +   D+I++DI L  + GL +
Sbjct: 8   ILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGLSV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K +++       PV+ +TA     D  +    G + Y++KP S++  M  I+  +  
Sbjct: 68  LKHMRQAGL--NTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR 123


>gi|307155194|ref|YP_003890578.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985422|gb|ADN17303.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 358

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+DN  N+ L +  +E  GY      +G+ AL   +   PD+I++D+ +  I G E+
Sbjct: 12  ILAVDDNPDNLFLIKLALEQEGYKVHLVEDGLTALAQIQYSPPDLILLDVMMPGIDGFEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+++  +  IP++ +TA+  +    +    G + +I KPI +      ++  + 
Sbjct: 72  TRRIRQNPNIPFIPILLITAY-EEPSLIQGLDVGADEFIRKPIQIDELQARVRSLLR 127


>gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D +    L    ++  GY   +  NG +AL+       D++I+D+ L ++ 
Sbjct: 1   MNENILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNLDLVILDVMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       P+I +TA     D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFRICQKIREQYFY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|221199375|ref|ZP_03572419.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221205723|ref|ZP_03578738.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221211588|ref|ZP_03584567.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221168949|gb|EEE01417.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221174561|gb|EEE06993.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180660|gb|EEE13063.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 241

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRQLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED+   +      +   GY  LQ ++G   L  A    PD++++DI L E++G 
Sbjct: 6   QRILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIMLPELNGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K++++    ++ PV+ ++A  M+ D+      G + Y+ KP  L   +  IK  +  
Sbjct: 66  DVLKELRQ--RGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRR 123


>gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 227

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V +VED E    L R  +E  G+       G EA    ++  PD++I+D  L  +S
Sbjct: 1   MIPRVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +P+I +TA   + +  R    G + Y+ KP S    +  +K  +
Sbjct: 61  GIELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAML 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|186685002|ref|YP_001868198.1| AraC family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467454|gb|ACC83255.1| two component transcriptional regulator, AraC family [Nostoc
           punctiforme PCC 73102]
          Length = 289

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 70/126 (55%), Gaps = 6/126 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK++++ED+ +   LF +++E  G+  +   +G+  ++ A++H PD++I DIQ+ ++ G
Sbjct: 6   SKKILVIEDDAVTRNLFLEVLEAQGFDTIGAEDGVAGIQKAQEHLPDLVICDIQMPDMDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI----- 116
             +  ++++D     IP I +T    + D  +  + G + Y++KP S+  F+  I     
Sbjct: 66  YTVLARLRQDPHTAIIPFIFLTGSNTQTDVRKGMESGADDYLTKPSSIEDFLRAIAVRLE 125

Query: 117 -KKYIG 121
            + ++ 
Sbjct: 126 KQAFLR 131


>gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
          Length = 234

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTREGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R  KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +PV+ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|118593260|ref|ZP_01550645.1| two-component response regulator [Stappia aggregata IAM 12614]
 gi|118434151|gb|EAV40807.1| two-component response regulator [Stappia aggregata IAM 12614]
          Length = 240

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D+     +    ++ + Y+     +G EAL+ A    P +I++DI L E+ GL
Sbjct: 4   QTILVVDDDPHIRDVICFALQKASYVFEVAADGKEALDKALLCNPSLIVLDIGLPEMDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + ++      E+P++ ++A   + D     + G + Y++KP S    +  +   +  
Sbjct: 64  DVCRHLR---RTSEVPILFLSARDDEIDRIVGLELGADDYVTKPFSPRELIARVGAILKR 120


>gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++++ G+       G +A +  ++  PD++++D+ L    
Sbjct: 1   MNARILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQKVNPDLVLLDLMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+E   +  +P+I +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GLEVCREIRE---ISSVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED+    +L    +  +G+  +   +G  A+E A +H+PD+I++D+ L +  G 
Sbjct: 17  ARLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVMLPDFDGF 76

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++  S     PV+ +TA    GD       G + Y++KP SL   +  I   +  
Sbjct: 77  AVVRRLR--SGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRR 134

Query: 123 A 123
           A
Sbjct: 135 A 135


>gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 231

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D      +    ++   + A++  NG +AL    + KPD+ I+D+ L +I 
Sbjct: 1   MPGKILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEKPDLAILDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       PVI +TA     D+      G + YI KP +    +  +K  +
Sbjct: 61  GFTILQKIRETYTF---PVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 238

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED     ++    +   GY      +G  AL L +QH+PD++I+D  L ++ GLE
Sbjct: 7   TILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I++    +  PV+ +TA + + D     + G + Y++KP  +   +  ++  +  
Sbjct: 67  VLRTIRQ---TKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRR 122


>gi|107025470|ref|YP_622981.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|254249878|ref|ZP_04943198.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|105894844|gb|ABF78008.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|124876379|gb|EAY66369.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 246

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E         PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALDDGAPDLIVLDLMLPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + + +PV+ +TA   + D     + G + Y++KP ++   +  I+  +  A
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124


>gi|270295181|ref|ZP_06201382.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274428|gb|EFA20289.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1303

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN   +K   + +    Y  L+  NG  AL +  +   D+++ DI + E+ GLE
Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKEDIDLVVSDIMMPEMDGLE 1112

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   IK D     IP+I +TA A +  +      G + YI+KP ++ +    I K I
Sbjct: 1113 LCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKII 1169


>gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 227

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D E   +L    I+  GY   +  NG +AL++      D+ I+D+ + ++ G
Sbjct: 1   MASVLVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMADMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +  +I++ S    IP+I ++A     D+      G + Y++KP +    +  +K  + 
Sbjct: 61  ITLCMEIRKKS---NIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML+K++IV+D +  +   +D  +  GY  +   NG EA+E   +   D+I++DI +  I 
Sbjct: 1   MLEKILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDK-DIDIILLDIMMPNID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+   +    P+I ++A   + D+ +    G + YI KP S+      ++ ++
Sbjct: 60  GFQICQKIR---DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|170737378|ref|YP_001778638.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819566|gb|ACA94148.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 246

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E         PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALDDGAPDLIVLDLMLPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + + +PV+ +TA   + D     + G + Y++KP ++   +  I+  +  A
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124


>gi|160891726|ref|ZP_02072729.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492]
 gi|317478215|ref|ZP_07937381.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
 gi|156859133|gb|EDO52564.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492]
 gi|316905608|gb|EFV27396.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
          Length = 1303

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN   +K   + +    Y  L+  NG  AL +  +   D+++ DI + E+ GLE
Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKEDIDLVVSDIMMPEMDGLE 1112

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   IK D     IP+I +TA A +  +      G + YI+KP ++ +    I K I
Sbjct: 1113 LCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKII 1169


>gi|139439532|ref|ZP_01772964.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC
           25986]
 gi|133775085|gb|EBA38905.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC
           25986]
          Length = 259

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +     +E  GY      +G  A++LA +   D+I++D+ L +++G
Sbjct: 1   MARILIVEDEEKIARFVTLELEHEGYQVEHAADGRTAVDLALERNYDLILLDVLLPQLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +++++    +++PVI VTA     D+      G + Y++KP ++      I+  + 
Sbjct: 61  MEVLRRVRKH---KDVPVIMVTARDAVMDKVAGLDAGADDYLTKPFAIEELFARIRVALK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D+  N+KL   L+E +GY  ++  +G   L+   Q+ PD+I++D+ + + +G ++
Sbjct: 3   ILVADDDLPNVKLTAFLLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVMMPKTNGFDV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +QI+      ++P+I ++A +   D     + G + Y+ KP   S  +  ++  +  
Sbjct: 63  CRQIR---RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRR 117


>gi|291569174|dbj|BAI91446.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1009

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 64/118 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N  L   L++  G+   +  NG EA+ L +Q  P +I MD+ +  I G E
Sbjct: 792 RILVVEDNPVNRLLLTTLLQDVGFEVREAENGQEAIALWQQWHPHLIFMDMHMPVIDGFE 851

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ IK+        V+A+TA A     +     GC+ +ISKP      +ET+ KY+G
Sbjct: 852 ATQYIKQSEVDAIPVVVAITASAFTEQRQNCIDAGCDDFISKPFRREQVLETLTKYLG 909


>gi|153010999|ref|YP_001372213.1| response regulator receiver protein [Ochrobactrum anthropi ATCC
           49188]
 gi|223635114|sp|A6X580|DIVK_OCHA4 RecName: Full=Polar-differentiation response regulator divK
 gi|151562887|gb|ABS16384.1| response regulator receiver protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 123

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 93/123 (75%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K VMIVEDNELNMKLFRDLIE SGY  ++TRNG+EAL+LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MPKSVMIVEDNELNMKLFRDLIEASGYETIRTRNGLEALDLAREHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKDDDELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E        L+   G+ A     G EALE   ++  D++++D+ L  +SG
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ+++ S    +PVI VTA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +     ++  GY      +G+  L  AR+  PD+I++D  L  ISGLE
Sbjct: 5   RILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLPGISGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K++++     ++P+I +TA     D       G + YI KP +L   +  ++  +  
Sbjct: 65  ICKRLRQTG--SKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121


>gi|38232907|ref|NP_938674.1| two-component regulatory protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199165|emb|CAE48790.1| two-component regulatory protein [Corynebacterium diphtheriae]
          Length = 233

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 59/120 (49%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    +++    +E  G+  L   +     +L  +++ D++I+D+ L + SG  
Sbjct: 5   RVLVVDDEPQMVQIISYALELEGWEVLSASSAQRGWQLLNEYRCDLVILDVMLPDASGYA 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   ++   PVI +TA     +     + G + Y++KP S    +   +  +  +
Sbjct: 65  LCERIRAAGDVAGTPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRRS 124


>gi|325971498|ref|YP_004247689.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324026736|gb|ADY13495.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 224

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    +L R  + ++GY  L+  +G +AL++      D+II+DI +  + G
Sbjct: 1   MNTILVVEDDSDIRELERYTLTSNGYAVLEAEHGKQALQVLGTQTVDLIILDIMMPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L   K ++  S     P+I V+A   + D     + G + Y++KP S+++    I+  + 
Sbjct: 61  LSFIKTLR-FSLNDTTPIIVVSAKGDESDIITALELGADDYLTKPFSMNVLSSKIRAVLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +  +   +D  E  GY  +   NG EA+E   +   D+I++DI +  I 
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I+   +    P+I ++A   + D+ +    G + YI KP S+      ++ ++
Sbjct: 60  GFQVCQNIR---DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
 gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
          Length = 236

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      + R  +E + +  ++T N  +A  L    +PD++++D  L   SG+E
Sbjct: 5   KILVVDDEYAIRDMLRMALEIADFDCIETDNISDAHSLVVDERPDLVLLDWMLPGGSGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K     + IPVI +TA + + +  +  + G + Y++KP +    +  IK  +  +
Sbjct: 65  LLRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKALLRRS 124


>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus ATCC 19977]
 gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus]
          Length = 247

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KV++V+D    ++L    ++  G+      +G  AL+LAR  +PD +I+D+ +  + G 
Sbjct: 21  AKVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVMMPGMDGF 80

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 81  GVLRRLRADGI--DAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRR 138

Query: 123 A 123
           +
Sbjct: 139 S 139


>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
            AK-01]
 gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1152

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 5/124 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VEDN++N  + + ++   GY  L   NG EALE   + + D+I+MDIQ+  + GLE
Sbjct: 905  TVLLVEDNQVNQMVAKGILRKLGYKTLVVENGQEALEFLAEKQVDIILMDIQMPVMDGLE 964

Query: 64   ITKQIKEDSELQEI----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T++I+ D   + +    P+IA+TA AMKGD E+    G + YI+KPI  +     +   
Sbjct: 965  ATRRIR-DGRHKVLDPGAPIIAMTARAMKGDREKCLDAGMDDYITKPIDPAALAAVMASR 1023

Query: 120  IGEA 123
            +G A
Sbjct: 1024 LGGA 1027



 Score = 73.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           KK++IV+D          +++  G +  +   G  ALE  ++        + +++D  + 
Sbjct: 758 KKILIVDDCPATRTSISLILQQWGCLCREASGGRSALEQLQRAVDKHAPFNAVLVDQAMP 817

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTA-FAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           ++ G  + + IKE+   +    +A+ A     G +         A ++KP+        +
Sbjct: 818 DMDGSALIQSIKENPAYEGAR-LALMAPLGAPGLKAAKSNQDAAAVLTKPVRKKQLYNLL 876

Query: 117 KKYIGEA 123
               G A
Sbjct: 877 LDLFGNA 883


>gi|51245645|ref|YP_065529.1| two-component system sensory/regulatory protein [Desulfotalea
            psychrophila LSv54]
 gi|50876682|emb|CAG36522.1| related to two-component system sensory/regulatory protein (hybrid
            family) [Desulfotalea psychrophila LSv54]
          Length = 1358

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +K+++V+D+  N+     ++E  G   +  R+G+E LE  ++    D ++MDI +  + G
Sbjct: 1239 RKILLVDDDMRNVFALSSVLEERGINIVVARDGIECLEKLKEQDHFDAVLMDIMMPRMDG 1298

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+++ + +++P+IA+TA AMKGD  +  + G   Y++KP+     +  ++ ++
Sbjct: 1299 YEAMQEIRKNIQHKKLPIIALTAKAMKGDRSKCIEAGASDYLAKPVDADKLISMLRVWL 1357



 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 6/125 (4%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K ++I+ED+E   ++ RD+    G+  +   +G   L LA  + P  II+DI L  I G
Sbjct: 970  SKSLLIIEDDENFSRVLRDIGRDRGFACILASDGETGLALADHYTPSAIILDIGLPGIDG 1029

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKK 118
              + +++K++S+L+ IPV  ++A     D     + G   Y++KP+S+      +  ++ 
Sbjct: 1030 WTVMERLKDNSKLRHIPVHFMSASDSSMD---AMRMGAIGYLTKPVSMEKVEETLAKLEN 1086

Query: 119  YIGEA 123
             I  +
Sbjct: 1087 VISRS 1091



 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VED+++  +   +LI  S        +G  A+    + + D +I+D+ L ++SG 
Sbjct: 1093 KRLLLVEDDKIQRESIIELIGNSDVKTTAVDSGAGAILELNRERYDCMILDLGLGDMSGF 1152

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ ++I++   L  +P+I  T   +   EE       E  I K + S    ++
Sbjct: 1153 ELLEKIRQSESLYRLPIIIYTGRDLTQTEEAQLNKYAETIIVKGVKSPERLLD 1205


>gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I++D E+ +K  +  +   GY      +G E LE  +    D++I+D+ L +I G
Sbjct: 1   MENILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKIKNGNYDLVILDLMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + K+++       IP+I +TA     D+    + G + Y++KP +    +  I+    
Sbjct: 61  LTLCKEVRS---FSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 222

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I+ED E   KL RD    S +  L+  +G++AL++ +++  D++I+DI +  + G  
Sbjct: 2   KILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVFKENSVDIVILDIMIPYLDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+++S+   +P+I +TA   + D+    + G + Y++KP S  + +  +K  +  +
Sbjct: 62  VCKSIRQNSK---VPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRS 118


>gi|158333299|ref|YP_001514471.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158303540|gb|ABW25157.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
          Length = 343

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ +    +   G+      +G  AL+      PD+I++DIQ+  ++GLE 
Sbjct: 10  ILIVDDVPTNLTILAQTLRDQGFTVWVATSGNAALKQLAHGLPDLILLDIQMPGMNGLET 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K D   Q+IPVI ++A + + ++      G   YI+KP   +  +  +K ++
Sbjct: 70  CAKLKADLRTQDIPVIFMSALSEQANKVEGLSLGAVDYITKPFQEAEVLARVKVHL 125


>gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+ +  +  R  +E  GY  +   +G+  LE AR+ +PD++I+D+ L  + G
Sbjct: 3   MSTILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRDQPDMVILDVMLPRLDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++++SE   +P++ +TA   + D     + G + Y++KP SL   +  ++  + 
Sbjct: 63  FSVCRILRQESE---VPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
 gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
          Length = 1259

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 72/123 (58%), Gaps = 5/123 (4%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DNE+N  + ++++++ G+      NG +A+E  +  + D+++MD ++ E+ G   
Sbjct: 989  ILVVDDNEINRIVAKEILQSEGFQVSLAENGRQAVEKIQSGQFDLVLMDCEMPEMDGFAA 1048

Query: 65   TKQIKE-----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I+        EL  +P++A+TA A+ GD+ER    G   Y+ KP++ S  ++TI   
Sbjct: 1049 TRMIRNLAENGHPELANLPIVALTAQAVLGDKERCLAAGMNGYVMKPVNRSELIDTIVDC 1108

Query: 120  IGE 122
            +  
Sbjct: 1109 LSR 1111



 Score = 87.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58
           +V+ V+DN +N+++ ++ +++ G       NG  AL L      R     + I+D  + E
Sbjct: 841 RVLAVDDNHMNLQVIKEQLQSWGVEVSTAGNGRRALALLEDAAKRNVPYQLAILDHLMPE 900

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GL +   I +   L E  ++ +T++        ++K      + KP+  +  ++ +  
Sbjct: 901 LDGLRLAHLINDHQMLHETRLLMLTSYEHTIPHAELKKLEMV-CLPKPVRQTRLLDALVA 959

Query: 119 YIGE 122
             GE
Sbjct: 960 LTGE 963


>gi|67924947|ref|ZP_00518336.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
 gi|67853208|gb|EAM48578.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
          Length = 122

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L   L++ +G+      +G EALE  +   PD+II+D+ +  ++G
Sbjct: 1   MPTILVADDSPAQRELIAGLLKENGFSVATAIDGAEALEKLKSLAPDLIILDVVMPNLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  + IK D + + IPVI  +    + D     K G +AYI KP      + T+K+ + 
Sbjct: 61  YQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIVKPFPHDELLGTVKQLLR 120

Query: 122 EA 123
            +
Sbjct: 121 NS 122


>gi|332879261|ref|ZP_08446958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682681|gb|EGJ55581.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1414

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VED++       + ++   +  ++ R+G+E  + AR   PD+I+ D+ +  + G+
Sbjct: 1156 KKILVVEDHDEFRHFLMEQLQKD-FCVVEARDGVEGEQAARTELPDLIVSDLMMPRMDGM 1214

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ +++K D +   IP I +TA +         + G ++YISKP +  +    I++ I +
Sbjct: 1215 ELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIEQ 1274


>gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
 gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
          Length = 233

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDNE    +        GY  +   +G +  E   + + D++I+D  L  + G+ 
Sbjct: 2   KILVVEDNESVCSMLEMFFMKEGYHGVFVHDGQQGFEHFNKERWDLLIVDWMLPIMDGVT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E   L ++P+I +TA   + D+    + G + Y++KP S    M  IK     
Sbjct: 62  LCRKIRE---LSKVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRR 117


>gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 235

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IV+D +    L    ++  GY   +  NGM+AL+       D+ I+D+ L +I 
Sbjct: 1   MSEQILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       P+I +TA     D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFRICQKIREQYYY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122]
 gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122]
          Length = 238

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +D+   +++   L+ + GY     R+G+EAL LAR H  D+ I+D+ + + SGL
Sbjct: 11  ARILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALAR-HPFDLAILDVMMPKASGL 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++        P++ +TA +   D+      G + Y+ KP S    +  +K  +  
Sbjct: 70  EVCERLR---LSSNAPILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRR 126


>gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +MIV+D +   ++    +++ GY  +   +G  AL L +   PD+I++DI++  + G
Sbjct: 1   MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+       IPVI ++      D+    + G + Y++KP         IK  I 
Sbjct: 61  LEVCREIRSQL---SIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIR 117


>gi|330968269|gb|EGH68529.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 783

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 63/118 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N  + + ++   G   + + +G EALE       D+++MD  +  + G 
Sbjct: 660 ARVLLVEDNPVNQLVAKGILSKLGCEVIISSHGGEALEQLEHGHFDLVLMDCNMPVMDGY 719

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E ++QI+       +P++A+TA AM  + ER +  G   Y++KP   +     + ++I
Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRTELAGILDQWI 777


>gi|291519045|emb|CBK74266.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 223

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEIS 60
           +KK+++V+D E    + R   E  GY   +  +GM+A++  +++   DVIIMD+ + E+ 
Sbjct: 1   MKKILVVDDEEKIRSIIRKYGEFEGYEVSEACDGMDAIQKVKENSDYDVIIMDVMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G     +IK+   +++IPVI ++A   + D     + G + Y+ KP S    M  +    
Sbjct: 61  GFSACSEIKK---IKDIPVIMLSARGEEYDRIHGFEAGVDDYVVKPFSPKELMMRVNVVT 117

Query: 121 GEA 123
             +
Sbjct: 118 SRS 120


>gi|220906186|ref|YP_002481497.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219862797|gb|ACL43136.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 406

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D  +N  L    +E  G+    + NG +AL+L      D++++D+ + +++GLE
Sbjct: 175 KILVVDDTLINRDLLSRRLERQGHTVKLSENGQQALQLLESQSFDLVLLDVIMPKMNGLE 234

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K+    ++IPVI ++A        R  + G E Y++KP +  +    IK  +
Sbjct: 235 LLRLMKDTPNWKDIPVIMISALDEVESAVRCIELGAEDYLTKPFNTILLKARIKACL 291


>gi|119493837|ref|ZP_01624404.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119452429|gb|EAW33618.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 374

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 63/115 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     ++  D++E   +  +   NG E + LA +H PD++I D+ + E+ G
Sbjct: 1   MKRILVIEDESDVREIILDILEAEEFSVIGAENGKEGVRLALEHLPDLVICDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            ++ K ++E+     IP + +TA A + +  +    G + Y++KP S    +  I
Sbjct: 61  YDVLKILREEKTTSTIPFVFLTAKATRENIRQGMNLGADDYLTKPFSRKDLLGAI 115


>gi|302188802|ref|ZP_07265475.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 705

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G  AL + ++  PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  QIK +     IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQIKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|295103423|emb|CBL00967.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 224

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I +D    + +     E+ G+  L   NG EAL+   +  PD+I++DI +    
Sbjct: 1   MNAKILIADDESDIVSMLGSFFESKGFRVLPAFNGAEALKQVEKQ-PDIILLDINMPGTD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+I+   +    P++ +TA     D+ +    G + YI KP SL      ++ ++
Sbjct: 60  GLEVCKRIR---DHISCPILFLTARIEDTDKVKGFTVGGDDYIVKPFSLMELEARVRAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 228

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED     +     ++  GY      +G   LE A +   D++++D+ L  +SG
Sbjct: 1   MAKILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSDIDLVLLDVMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+ +S+   +P+I +TA     D+      G + Y++KP ++   +  I+  + 
Sbjct: 61  IEVCRRIRMESQ---VPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae]
 gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae]
          Length = 231

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   ++I +D+     L    +E  GY  ++  +G E +++ +    D++I+DI + ++
Sbjct: 1   MKNITILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T++I+E      +P+I ++A     D+ +    G + Y++KP      +  +   
Sbjct: 61  DGFEVTRRIREK---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|134292232|ref|YP_001115968.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135389|gb|ABO56503.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 246

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E   L     PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRAIRELIADYLEKNGMRVSVAANGREMRNLLDDGAPDLIVLDLMLPGEDGLA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++     + +PV+ +TA   + D     + G + Y++KP ++   +  I+  +  A
Sbjct: 66  LCRDLRA-GRFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124


>gi|300867489|ref|ZP_07112140.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300334483|emb|CBN57308.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 427

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K   ++IV+D   N++    L+   GY   +  NG  AL   +   PD+I++DI +  
Sbjct: 1   MTKTADILIVDDTPDNIRFLSSLLVEQGYNVRKALNGKMALTAVKAVLPDLILLDINMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G E+ + +K D++   +PVI ++A     D+ +  + G   YI+KP  L   +  I+ 
Sbjct: 61  MNGYEVCEHLKNDAKTSAVPVIFLSALDGVVDKVKAFQIGGVDYITKPFQLEEILARIQS 120

Query: 119 YI 120
            +
Sbjct: 121 QL 122


>gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +L +D +E SG+      NG   L+ A +   D++I+D+ L  + G
Sbjct: 1   MSRILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEEDFDLLILDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++++E    +  P+I V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICRKVRE---AKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218781447|ref|YP_002432765.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762831|gb|ACL05297.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 242

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED        +  +E +GY      +G+EALE  R   PD+I++DI L +I GL
Sbjct: 10  RRILVVEDEAHIADGLKLNLELNGYEVEIAVDGVEALEKYRFWGPDLIVLDIMLPQIDGL 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+ +   Q IP++ ++A     D+      G + Y+SKP +L  F+  +++ I  
Sbjct: 70  SVLRNIRLND--QHIPILILSAKGAPEDKITGFSYGTDDYLSKPFNLQEFLLRVERLISR 127

Query: 123 A 123
           A
Sbjct: 128 A 128


>gi|84387714|ref|ZP_00990730.1| Response regulator [Vibrio splendidus 12B01]
 gi|84377397|gb|EAP94264.1| Response regulator [Vibrio splendidus 12B01]
          Length = 242

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           ++++V+D++   +L  + +  SG+      +G+E     + Q  PD+I++D+ L    G 
Sbjct: 6   RILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++ S    +P+I +TA + + D+    + G + YI+KP S    M  IK  +  
Sbjct: 66  TLCQRVRKQS---NVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122


>gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D +         ++  G   L+ ++G+EALE+  +++  +I++D+ +  + G+ 
Sbjct: 5   TVLVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEMLHENEVHLILLDVMMPRLDGIS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+E+   + IP+I ++A +   D+    + G + Y++KP +    +  +K  +  
Sbjct: 65  ATHRIREE---KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120


>gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
 gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
          Length = 227

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML K+ +VED E    L R  +E+ GY       G EA    ++  PD++I+D  L  +S
Sbjct: 1   MLPKIAVVEDEEALSVLLRYNLESEGYEVETILRGDEAELRLQERVPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   + + +P+I +TA   + +  R    G + Y+ KP S    M  +K  +
Sbjct: 61  GIELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|300726984|ref|ZP_07060404.1| putative histidine kinase [Prevotella bryantii B14]
 gi|299775707|gb|EFI72297.1| putative histidine kinase [Prevotella bryantii B14]
          Length = 1366

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+D++   +  R+ +    Y  ++  NG  ALE   +H+P +I+ D+ +  + G E 
Sbjct: 1112 VLLVDDSDDFREFMREELSDH-YEVVEAENGKVALEKIAEHRPHIILSDVMMPVMDGNEF 1170

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K +     IPVI +TA      +    + G + YI+KP S+ +    +   +
Sbjct: 1171 CRLLKGNPATANIPVIMLTARLTMLQKIEGLEHGADDYITKPFSMDLLRLRMANLM 1226


>gi|296272695|ref|YP_003655326.1| response regulator receiver modulated diguanylate cyclase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096869|gb|ADG92819.1| response regulator receiver modulated diguanylate cyclase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 290

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++V+D  +N+K+  +L+    Y  +    G  A+ +A   +PD+I++DI +  + G
Sbjct: 1   METILVVDDTNINIKILVELLGDK-YDIIVAIGGESAINIASSEQPDLILLDIMMPVMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++K++ +  +IP+I +TA   +   ER  + G   YI KP      M  +K ++
Sbjct: 60  FEVCRRLKQNPKTNDIPIIFLTAKTDEDSIERAYEMGGSDYILKPFKPKELMARVKTHL 118


>gi|75909821|ref|YP_324117.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75703546|gb|ABA23222.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 393

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+  N+ L + ++E  GY      NG+ AL   +    D++++D+ +  + G E
Sbjct: 10  KILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGMDGYE 69

Query: 64  ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++++ + +LQ+ IP++ +TA     +       G + +I KP+++   +  ++  + 
Sbjct: 70  VTRRVRGEMKLQQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 127


>gi|186681324|ref|YP_001864520.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186463776|gb|ACC79577.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 379

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 65/119 (54%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+  N+ L + ++E  GY      NG+ AL   +    D++++D+ + ++ G E
Sbjct: 10  KILVVDDSPDNVFLIKTILEEEGYTISTAENGISALAELKASPCDLVLLDLMMPDMDGYE 69

Query: 64  ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +TK I+ D +L + IP++ +TA     +       G + +I KP+++   +  ++  + 
Sbjct: 70  VTKHIRGDMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 127


>gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 231

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D      L    ++   ++  +  +  EA     + + D+ ++DI + +IS
Sbjct: 1   MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+I+E       P+I +TA   + D+ +    G + YI+KP      +  +K  +
Sbjct: 61  GLELCKKIRERYNY---PIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E   K     ++  GY      +G   L+ A ++  DVI++D+ L E++G
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E    ++ P+I +TA     D       G + Y+ KP ++   +  I+  + 
Sbjct: 61  LEVARRLRE---TKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60
           +K+V+IVED E   +     ++ +G+  ++  +G EAL + +  K  D++++DI L  I 
Sbjct: 1   MKRVLIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K+ +E++    I VI +TA + + D+      G + YI KP S    +  I   +
Sbjct: 61  GYKVLKKTRENN--SSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++      +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLL 117


>gi|254507777|ref|ZP_05119908.1| response regulator [Vibrio parahaemolyticus 16]
 gi|219549302|gb|EED26296.1| response regulator [Vibrio parahaemolyticus 16]
          Length = 240

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEI 59
           M  K+++V+D++   +L  + +  SGY+     +G +  L L +   P+++++D+ L   
Sbjct: 1   MSAKILVVDDDQEIRELLDEYLTKSGYLVDTVADGEQLKLHLEQTGYPELVLLDVMLPGD 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + + I+ +S    +P+I +TA + + D+    + G + YI+KP +    +  IK  
Sbjct: 61  DGFTLCQYIRRES---SVPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|206564292|ref|YP_002235055.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198040332|emb|CAR56317.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 246

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E         PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALDDGAPDLIVLDLMLPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + + +PV+ +TA   + D     + G + Y++KP ++   +  I+  +  A
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124


>gi|220909913|ref|YP_002485224.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
 gi|219866524|gb|ACL46863.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
          Length = 406

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ +D   N  L   ++E  GY      +G EAL       P ++++D+ + E+ G E
Sbjct: 14  KILVADDAPDNRFLIEAILEEQGYALDFAEDGREALTKIEAAPPQLVLLDVMMPEMDGYE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++++++  L  IP++ +TA+  +         G + +I KP+        ++  + 
Sbjct: 74  VTRRVRQNPNLSYIPILLITAY-EQVTVAAGLDTGADDFIRKPLEPEELSARVRSLLR 130


>gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 235

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++ ED E  ++  +  +E  GY      NG +AL+  ++ + +++I+D+ + EI G 
Sbjct: 5   KRILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKFKEERFNLVILDVMMPEIDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+   E  E+P++ +TA     D+    K G + Y++KP +L   +  +   +  
Sbjct: 65  VVAETIR--LENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKR 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +         ++   + +    NG +ALE A++   D+ I+DI L  + G E
Sbjct: 7   RILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIMLPGMDGYE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        PV+ ++A   + D+    + G + Y+SKP  L   +  ++  +  
Sbjct: 67  LCRRLRS---FTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRR 122


>gi|189424183|ref|YP_001951360.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
 gi|189420442|gb|ACD94840.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
          Length = 452

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+  N+ + RD +    Y  L   +G  A++ A   +PD+I++D+ +  I G E 
Sbjct: 18  ILVVDDDANNLAVVRDCLVAFNYTILVAEDGESAVKRADYARPDLILLDVMMPGIDGYET 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K       IPV+ +TA A  G++ +  + G   YI+KP      +  I  ++
Sbjct: 78  CRRLKALKSTHAIPVLFMTALAETGNKVKGLEAGAVDYITKPFQREELLARIAVHL 133


>gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 909

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++V+D E N  L    ++   +  +Q  NG EA+E       D+I+MDIQ+  + G
Sbjct: 787 SARILVVDDTEDNRFLLLTYLKKLPFEVVQAENGKEAVEKVLAEPFDLILMDIQMPVMDG 846

Query: 62  LEITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
              T++I++  +   L+ IP+IAV+A AM  D ++    GC  +++KPI  S  +E I +
Sbjct: 847 YAATRKIRQWEKDQGLKPIPIIAVSANAMAEDMQKSLDVGCSEHVTKPIKKSALLEMIHR 906

Query: 119 YIG 121
           Y+G
Sbjct: 907 YLG 909


>gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+    +L    ++   Y     R+G EAL L ++ K D+I++D+ L +++
Sbjct: 1   MQKRILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLMLPKVN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I+E     ++PV+ ++A     D+      G + YISKP S+      ++  I
Sbjct: 61  GMELLKHIRE---TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 247

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L    +   G+      +GM A+  ARQ +PD +++D+ L ++ G E
Sbjct: 22  RVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPDLDGFE 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ED     +PV+ +TA     +       G + Y++KP SL   +  ++  +  +
Sbjct: 82  VLRKLREDDAT--VPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS 139


>gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
          Length = 234

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K++IV+D+    +L    +E  G+   +  +G++AL    + K D+ I+DI +  + 
Sbjct: 1   MIPKILIVDDDPHIRELVSVFLEKEGFQTYEAVDGLDALRRIEEVKVDMAILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     ++P++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDLCYELRK---YYDMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1200

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K V+I +D+  N+      +E      L   +G EAL+  +++   DV+++D+ + ++ G
Sbjct: 1078 KTVLIADDDVRNIFSLSKSLENYKMNVLTALDGKEALQKLQENPSVDVVLLDMMMPQMDG 1137

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  K+I+E+ + + +PVIAVTA AM GD E+    G   YI+KP+ +   M  ++ ++
Sbjct: 1138 YETAKRIRENPQWRNLPVIAVTAKAMTGDREKCINAGASDYITKPVDIDQLMSLLRVWL 1196



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IVED+    K   D     GY  + +  G E LELAR  KP  I++DIQL  +SG 
Sbjct: 809 KTILIVEDDTFFAKSLLDYTRKQGYKGIVSVRGDEGLELARTFKPMGILLDIQLPVLSGW 868

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI---SLSIFMETIKKY 119
           E+  Q+K D E + IPV  +++  M   +    + G   +I KP+    +      I+  
Sbjct: 869 EVMDQLKNDPETRHIPVHIMSSHRM---KNESLQKGAIDFIDKPVAIEKMDEIFRKIEYV 925

Query: 120 IGE 122
           I +
Sbjct: 926 ISK 928



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 51/104 (49%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KKV+IVEDN ++ K     + T    +    +  E ++    ++ D +I+D+ + +   
Sbjct: 930  SKKVLIVEDNSMHAKALAYFLGTFEIHSELKSDIHEGIQALSGNEVDCVILDMGIPDKKA 989

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
             ++ ++ K++   + IP+I  T  ++   EE   K   ++ I K
Sbjct: 990  YDMLEEAKKNPGFEHIPIIIFTGKSLSMTEELRIKQYADSIIVK 1033


>gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 299

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D      L    ++   ++  +  +  EA     + + D+ ++DI + +IS
Sbjct: 69  MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+I+E       P+I +TA   + D+ +    G + YI+KP      +  +K  +
Sbjct: 129 GLELCKKIRERYNY---PIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQL 185

Query: 121 GE 122
             
Sbjct: 186 RR 187


>gi|254429432|ref|ZP_05043139.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195601|gb|EDX90560.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 227

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED     +L  D ++ + Y   QT +   A+ LAR+     +++D+ L +  G
Sbjct: 1   MSRILIVEDEPRLSQLVADYLQHAHYQTEQTDSAKAAIALAREQSFQAVLLDLMLPDGDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K I++ S    +P++ VTA   + D     + G + YI KP S    +  +K  + 
Sbjct: 61  MEVCKAIRQHS---NVPILMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|161899047|ref|YP_198017.2| response regulator PleD [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 458

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N+KL    ++   Y  +   +  EA++L  + +PD+I++DI + +I+
Sbjct: 1   MTARILVVDDVPSNVKLLEARLKAEYYTVIVAHDSEEAIDLVAKQQPDIILLDIMMPKIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K +K       IP+I VTA     D  +    G + +++KPI  +     IK   
Sbjct: 61  GFKVCKNLKSTPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPIDETALSARIKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 53/113 (46%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+++    +   ++++    +     + MEAL++  +   D+II D+Q  E  GL +
Sbjct: 159 ILVVDEDIFQAEQIHNVLKQRFKLINILNDPMEALKVGIEDNYDLIISDMQFSETDGLRL 218

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             + +   E +  P++ ++    K +  +    G   Y++ P+  S  +  + 
Sbjct: 219 CSEFRSKVETRYTPILILSEDYNKNNLVKALDVGANDYLTVPLDESELIARVN 271


>gi|75910334|ref|YP_324630.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75704059|gb|ABA23735.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 440

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 66/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+DN  N+K+  D I + G+ AL   +G  A+E A   +PD+I++D+ +  I G 
Sbjct: 10  ATILIVDDNPTNLKVLSDAISSLGWEALIATDGESAIEEAEYAQPDIILLDVMMPGIDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +   ++K+ S  + IPVI +TA   + D+      G   YI+KP +L   +  I+ ++
Sbjct: 70  QTCTELKKKSSTKHIPVIFLTALTDQFDKVLGLVTGGVDYITKPFNLDEVLARIQVHL 127


>gi|254248175|ref|ZP_04941495.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124874676|gb|EAY64666.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 347

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+    D ++  GY+ +   +G +AL+   +  PDV+++D  + ++ G E 
Sbjct: 37  ILIVDDTPENLAFLSDTLQARGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 96

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +IK+D   + +PVI +TA        R  + G   Y++KP+        I  ++  +
Sbjct: 97  CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 155


>gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+I+ED +    + +  ++   Y A+ T NG EA+ + +Q   D +I+D+ L ++SG 
Sbjct: 6   KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI K+I+  S+   +P++ +TA   + D       G + Y++KP S    +  ++  +  
Sbjct: 66  EICKRIRLQSQ---VPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRR 122


>gi|312129598|ref|YP_003996938.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311906144|gb|ADQ16585.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1259

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED+        + +    +  +   NG E L LA++H P++II D+ +  + G+ +
Sbjct: 1014 ILVVEDHTDLRDYIAETL-KEKFQVIVAANGQEGLRLAKEHMPELIITDLMMPVMDGMSL 1072

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++++E+     IP+I +TA     D     + G  +Y++KP S  + +  I+  +
Sbjct: 1073 SRKLRENIHTSHIPIILLTAKDTTEDRIEGYELGIASYLTKPFSAQLVISRIENLL 1128


>gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 224

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +    +    ++ + +      +G EALE       D+II+DI L +++G E
Sbjct: 2   KILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++ +    E PV+ +TA     D+ +    G + Y+ KP      +  I+  +  
Sbjct: 62  VVKNLRANKN--ETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR 118


>gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44]
 gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44]
          Length = 243

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L R  +   G+  +   +G     +  +   D+I++D+ +    GL 
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 70  ICRRLRSAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126


>gi|29655289|ref|NP_820981.1| transcriptional regulatory protein [Coxiella burnetii RSA 493]
 gi|161829818|ref|YP_001595970.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
 gi|29542561|gb|AAO91495.1| two-component response regulator [Coxiella burnetii RSA 493]
 gi|161761685|gb|ABX77327.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
          Length = 245

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L    +   G+ A   ++G E   +  +   D++I+DI +    GL 
Sbjct: 6   HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIMMPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ +S    IP++ +TA + + D     + G + Y+SKP +    +  ++  +  +
Sbjct: 66  LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122


>gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++V+D E    L    +E  GY  L+ ++G EA++L ++   D++++DI + E+ G
Sbjct: 1   MKTILLVDDEERMKNLLALFLEPHGYKCLRAKDGYEAIQLVKRTHVDMLLLDIMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  ++I+E      +P+I +TA     D  +    G + Y++KP    + +  +     
Sbjct: 61  LETCRKIRE---FSNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 237

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D    + L    +  SG+  +   +G EA      H  D++++D+ L   SG
Sbjct: 1   MATILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHPIDLMLLDVMLPGKSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++T++++   E   IP+I +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  VDLTRELR--GEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|304391595|ref|ZP_07373537.1| response regulator PleD [Ahrensia sp. R2A130]
 gi|303295824|gb|EFL90182.1| response regulator PleD [Ahrensia sp. R2A130]
          Length = 457

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N++L    +    +  +   NG +A+ + +  + DVI++D+ +  + 
Sbjct: 1   MTARILVVDDVEANVRLLEARLLAEYFEVVTASNGPDAIAICQAGRCDVILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+  ++K D +   IP+I VTA     D  +    G + +++KP+        +K   
Sbjct: 61  GYEVCTRLKADPKTAHIPIIMVTALDQASDRVQGLDAGADDFLTKPVDDLAMTTRVKSLA 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 88.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   + +   + + T  +      +  E L  A     D II+ + ++    L 
Sbjct: 157 KILIVDDRASSYERSVNALTTE-HSVAVVTDPQEGLFRAADDDFDAIIISLGIENFDPLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +P++ V     +    R    G   YI++P+ ++     ++  +  
Sbjct: 216 LCSQLRSLDRTRLVPILLVAQKEDQAVLIRAIDLGVNDYITRPLDVNELRARVRSQVRR 274


>gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 69/120 (57%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           KV++V+D     KL +D +   GY  L+  +GMEA+++  + K   ++I+D+ + ++ G 
Sbjct: 5   KVLVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+E     ++P+I +TA + + DE +  + G + YISKP S  I +  +   +  
Sbjct: 65  QVCREIRE---TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRR 121


>gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1225

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 1/120 (0%)

Query: 3    KK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+ ++IVED   N  L   L+   G+   +  +G EA+E+    +PD+I+MD+++  ++G
Sbjct: 1007 KRSILIVEDQPNNRLLMIKLLSEIGFEVREASSGQEAIEICSTWQPDLILMDMRMPVMNG 1066

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+QI   S  ++  +IA+TA   + +++ I   GC+ +I KP      +E I+KY+G
Sbjct: 1067 FEATQQINAMSFAKKPIIIALTANTFEAEKQAIFNAGCDDFIGKPFQREELLEMIRKYLG 1126


>gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 239

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    + L R  +   G+  L    G  ALELA   +PD++I+D+ L +I G E
Sbjct: 6   RVLVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVMLPDIDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++ D     +PV+ ++A     D+      G + Y++KP ++   +  ++  +  
Sbjct: 66  ICRRLRADGH--PVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRR 122


>gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
 gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 71/120 (59%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   GY+ L+  +GMEA++L  + K   ++I+D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVKDFLTREGYLVLEAGDGMEAMDLFYEDKDIALVILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+E S+   +P+I +TA + + DE +    G + YISKP S  I +  ++  +  
Sbjct: 65  QVCREIREHSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 121


>gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 61/121 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED     +L    ++ +G+ +    N   A +  +   P ++++D  L + SG
Sbjct: 21  MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSG 80

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L +  +I+ D +LQ++ VI +TA +M+ D+      G + YI+KP S       IK  + 
Sbjct: 81  LHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLR 140

Query: 122 E 122
            
Sbjct: 141 R 141


>gi|261819497|ref|YP_003257603.1| DCpxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261603510|gb|ACX85996.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 67/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D++    L ++L+E  G+  +   +G +AL++   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDKELTALLKELLEMEGFNVVVAYDGEQALQIV-DNTIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|256821452|ref|YP_003145415.1| response regulator receiver protein [Kangiella koreensis DSM 16069]
 gi|256794991|gb|ACV25647.1| response regulator receiver protein [Kangiella koreensis DSM 16069]
          Length = 121

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 66/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IV+D+     +   ++E +G+  +   +G   +  A+ + PDVI+MD+ +  ++G
Sbjct: 1   MARVLIVDDSPTEAHILTGMLEKNGHQVITAPDGESGIVSAKANHPDVILMDVVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T+Q+K+D     IP+I V+  +   D     + G   YI+KP+  +  +E++   +G
Sbjct: 61  FQATRQLKKDPATSSIPIIIVSTKSQATDRVWGMRQGANDYITKPVDEASLLESVNNVLG 120


>gi|227329683|ref|ZP_03833707.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL++   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQIL-DNTIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
 gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   G+  ++  +G EA+++        ++++D+ + ++ G 
Sbjct: 5   KILVVDDEARMRKLVKDFLTNKGFQVIEAGDGEEAVDIFFADKDIALVLLDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K I++     ++PVI +TA + + DE +    G + YISKP S  I +  +   +  
Sbjct: 65  EVLKTIRK---YSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|189465368|ref|ZP_03014153.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM
            17393]
 gi|189437642|gb|EDV06627.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM
            17393]
          Length = 1295

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++ ++DN+   +L + ++    Y      N ++ LEL +    D+II DI + +++GLE 
Sbjct: 1050 ILFIDDNKDLRELIQHILSKK-YQIFIAENALQGLELLKSTPVDIIICDIMMPQMNGLEF 1108

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +QIK D +   IP+I +TA     D+    K G E+YI+KP  + I    I   +
Sbjct: 1109 CRQIKGDIQTNHIPIIMLTAKNAVDDQIECYKAGAESYIAKPFEMKILQARIDNLL 1164


>gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
 gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
          Length = 1370

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G+  L   NG + ++    H    +++MD+ + E+ G
Sbjct: 1250 RTVLVVDDDARNLFALSGILELHGFQVLHAENGRKGVDTLLAHPEVCLVLMDVMMPEMDG 1309

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+      ++P+IAVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1310 YAATAEIRGLPRYADLPIIAVTAKAMPGDREKSLLSGASDYVTKPVDAGELIARVRRWL 1368


>gi|320324907|gb|EFW80979.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329273|gb|EFW85270.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 645

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCKVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y++KP   +   + + +++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQVLHRWL 634


>gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei
            87.22]
 gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces
            scabiei 87.22]
          Length = 1424

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60
            + V++V+D+  N+     ++E  G+  L   NG   +E+   H PD  +++MD+ + E+ 
Sbjct: 1304 RTVLVVDDDARNLFALSGMLELHGFQVLHADNGRRGIEMLLAH-PDISLVLMDVMMPEMD 1362

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G   T +I+   +  E+P+IAVTA AM GD+E+    G   Y++KP+  +  +  +++++
Sbjct: 1363 GYSATSEIRSMPQYAELPIIAVTAKAMPGDQEKSLASGANDYVTKPVDTNDLIGRVRRWL 1422



 Score = 55.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 21/134 (15%)

Query: 3    KKVMIVEDNELNMKLFRDLIETS------------GYIALQTRNGMEALELARQHKPDVI 50
            +++++VED      L   + E +                +      EA  +        +
Sbjct: 1144 RRLLVVEDRP--RGLLTLVAERAVADLAPGDDPPGAIDIITAIGAQEAASMLAAEPCHCV 1201

Query: 51   IMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE----AYISKP 106
            ++++ + +  G  + + ++ DS L  +PV+  T   +   +E+  +   E     ++S  
Sbjct: 1202 VLELGMPDGEGARLLEAMEGDSALASVPVLVHTGHRVDLAQEQTLRTRAEGRPLDFLS-- 1259

Query: 107  ISLSIFMETIKKYI 120
             SL    E I  ++
Sbjct: 1260 -SLDELRERITLHL 1272


>gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59
           +KKV+IVED ++  +         GY  +   +G   L+L   ++H   ++I+DI L  +
Sbjct: 1   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+++S    +P+I +TA + + D     + G + Y++KP   SI +   K+ 
Sbjct: 61  DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117


>gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator
           [Lactobacillus sakei subsp. sakei 23K]
 gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in
           phosphate regulation) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 237

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++V+D    + L R  +E   +  +   +G +AL +A Q K D II+D+ L ++ G
Sbjct: 1   MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +TK+I+E     + P++ +TA   + D+    + G + Y++KP S    +  I+    
Sbjct: 61  IAVTKKIREAKL--KTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIER 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1548

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 66/119 (55%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VEDNELN ++   L+  +G +     +G +A+ +  +   D+++MD+Q+  + G E
Sbjct: 1139 RVLLVEDNELNREVALGLLAEAGLVPDAAEDGAQAVRMVMEGDYDLVLMDVQMPVMDGYE 1198

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T+ I+   E   +P++A+TA AM+ D E     G   +++KPI        + +++  
Sbjct: 1199 ATRIIRRSREADSLPIVAMTANAMRSDREACLAAGMNDHVAKPIDPDELFAALIRWLPR 1257



 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
            +V++V+DN     +   ++E   +  +    G  AL+L R+         ++ +D Q+  
Sbjct: 992  RVLVVDDNPQARMVLAHMLEGMTFRPVMADGGETALDLLREARDADTPFGMVFLDWQMPG 1051

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            + GLE  + I+  +   ++PV  VTA   +         G  A + KP+  S+  +T  +
Sbjct: 1052 MDGLETARNIRTLA--PDLPVAIVTAHGREEIFAASEGVGVSAVLVKPVQPSLLFDTAMR 1109

Query: 119  YIG 121
             +G
Sbjct: 1110 LLG 1112


>gi|162448476|ref|YP_001610843.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Sorangium cellulosum
           'So ce 56']
 gi|161159058|emb|CAN90363.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Sorangium cellulosum
           'So ce 56']
          Length = 1143

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +DN    +    ++    +      +G EAL  AR+  P +++ D+ +  + G  
Sbjct: 648 RVLLADDNADMREYVGRVLRER-WTVEAVADGAEALASARRSPPALVLTDVMMPNLDGFG 706

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + ++ D   + +PV+ ++A A +       + G + Y+ KP S    +  +  ++
Sbjct: 707 LLRALRADERTRAVPVVMLSARAGEESRVEGLEAGADDYLPKPFSARELVARVATHL 763


>gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
          Length = 234

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|50123231|ref|YP_052398.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613757|emb|CAG77208.1| two-component response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL++   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQIV-DNTIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 228

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   +++VED++   +L +  + T  Y  +   +G+E ++   +   D+I++D+ +  +
Sbjct: 8   MKNYHILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNL 67

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G E+ K I+  S    IP+I +TA   + D+ +    G + YI+KP S  + M  ++  
Sbjct: 68  NGFEVAKMIRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAV 124

Query: 120 IGEA 123
           +  +
Sbjct: 125 LRRS 128


>gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED E      +  +   G++    ++G EA+ L+  +  DVII+D+ L   +G E
Sbjct: 9   RILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIKNGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++        PV+ +TA     +  +    G + Y+ KP +    +  +   +  
Sbjct: 69  VCSELRASGN--HTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRR 125


>gi|304407980|ref|ZP_07389630.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
 gi|304342999|gb|EFM08843.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
          Length = 880

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 77/119 (64%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDNE+N ++  +++   G       NG+EAL L    + DV++MD+Q+  + G+E
Sbjct: 625 RILLVEDNEINRQVAFEMLSGMGAAVDLASNGVEALRLLEHKRYDVVLMDLQMPVMDGME 684

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++I+E  +L  +P+IA+TA AMKG +E++ + G  AY++KP   +   E +++ + E
Sbjct: 685 ASRRIREREDLNNMPIIAMTADAMKGVKEKVLENGMNAYLTKPFDPASLYELLQRLMPE 743



 Score = 57.4 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
            V++V D    + + R  +E   +          A+E   +  + D++I+D +LQ+   +
Sbjct: 481 HVLLVCDEPEMLMVLRSQLEQFQFHITVAETEDAAIEQLYKGTRYDLVIVDWKLQDADPI 540

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
           ++ +++K+        ++ V+A+     ++RIR 
Sbjct: 541 QLAERMKQFGSSSLQVIVLVSAYHDLALQQRIRN 574


>gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 224

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           K++I +D     KL  D ++  GY  ++  +G +AL+L    +  D+II+D+ +    G 
Sbjct: 5   KILIADDEARMRKLVADFLKKEGYAIIEAADGRQALDLFYGNNDIDLIILDVMMPGYDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++ S+   +P+I +TA   + DE      G + YI+KP SL I    I+  +  
Sbjct: 65  TVCREIRKSSQ---VPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRR 121


>gi|253686544|ref|YP_003015734.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753122|gb|ACT11198.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL++   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQVL-DNTIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL+     K D++I+DI +  + G +
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 67  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|15598388|ref|NP_251882.1| two-component response regulator GltR [Pseudomonas aeruginosa PAO1]
 gi|107102722|ref|ZP_01366640.1| hypothetical protein PaerPA_01003788 [Pseudomonas aeruginosa PACS2]
 gi|116051181|ref|YP_789988.1| two-component response regulator GltR [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890616|ref|YP_002439480.1| two-component response regulator GltR [Pseudomonas aeruginosa
           LESB58]
 gi|254236153|ref|ZP_04929476.1| two-component response regulator GltR [Pseudomonas aeruginosa
           C3719]
 gi|254241879|ref|ZP_04935201.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192]
 gi|296388322|ref|ZP_06877797.1| two-component response regulator GltR [Pseudomonas aeruginosa PAb1]
 gi|313108507|ref|ZP_07794508.1| two-component response regulator GltR [Pseudomonas aeruginosa
           39016]
 gi|9949311|gb|AAG06580.1|AE004743_3 two-component response regulator GltR [Pseudomonas aeruginosa PAO1]
 gi|1621045|gb|AAC44475.1| GltR [Pseudomonas aeruginosa PAO1]
 gi|115586402|gb|ABJ12417.1| two-component response regulator GltR [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168084|gb|EAZ53595.1| two-component response regulator GltR [Pseudomonas aeruginosa
           C3719]
 gi|126195257|gb|EAZ59320.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192]
 gi|218770839|emb|CAW26604.1| two-component response regulator GltR [Pseudomonas aeruginosa
           LESB58]
 gi|310881010|gb|EFQ39604.1| two-component response regulator GltR [Pseudomonas aeruginosa
           39016]
          Length = 242

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 56/121 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D++   +L    +  +G+       G +  +   + +  + I+D+ L +  G 
Sbjct: 6   RSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEASLAILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+    L  +P+I +TA + + D     + G + Y+ KP S    +  IK  +  
Sbjct: 66  SLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 237

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D    ++L    +  +G+  +   NG +AL  A    PD+ ++D+ L +I G 
Sbjct: 8   AKLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVMLPDIDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++     +  P++ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 68  SVTRKLRA--AGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125


>gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 228

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +++++ED E   +    ++   G++     +G E LEL  +   D++++D+ L  +S
Sbjct: 1   MVTQLLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGADLVLLDLMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++++E S    +P+I +TA   + D+    + G + Y++KP S    +  I+  +
Sbjct: 61  GTDVCRRLRERS---NVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|323483016|ref|ZP_08088410.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum
           WAL-14163]
 gi|323691539|ref|ZP_08105808.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum
           WAL-14673]
 gi|323403645|gb|EGA95949.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum
           WAL-14163]
 gi|323504433|gb|EGB20226.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum
           WAL-14673]
          Length = 242

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D++  +++  + ++   +  L   NG +AL L  +   D+II+DI +Q + G
Sbjct: 17  MKKILIVDDDKRVVRMLEEYMKLYNFQTLCAGNGKDALALYDE-TVDLIILDINMQGMDG 75

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I++      +P+I ++A A   D+      G + YI KP      +  ++ +IG
Sbjct: 76  VEVCRRIRKQG---NVPIIMLSANAASFDKVEALGAGADDYIVKPFDPVELLARVRAHIG 132

Query: 122 E 122
            
Sbjct: 133 R 133


>gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+D     +     +    Y      +G  ALE       D+I++D+ L E  G  
Sbjct: 2   RVLIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADPFDLIVLDLMLPEKDGFT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ +    + PV+ +TA        +    G + Y+ KP S++  +  I+  +  +
Sbjct: 62  VLRELRAEGV--KTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRS 119


>gi|297621214|ref|YP_003709351.1| putative transcriptional regulator [Waddlia chondrophila WSU
           86-1044]
 gi|297376515|gb|ADI38345.1| putative transcriptional regulator [Waddlia chondrophila WSU
           86-1044]
          Length = 129

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K   ++++VED+ +N+++  ++++  G I     NG EAL+   ++  D I MD+Q+ 
Sbjct: 1   MTKQEYRILVVEDHFINLEMISEMLKRLGCIVDTASNGKEALDCVTKNFYDAIFMDLQMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G E T+ I+ED   Q+IP+IA+TA  +K D +R  + G + Y++KP  L      +K
Sbjct: 61  VMDGYETTRLIREDKTRQKIPIIALTANHVKSDLDRCLESGMDGYLTKPFELKDLNNVLK 120

Query: 118 KYI 120
           KY+
Sbjct: 121 KYL 123


>gi|296506631|ref|YP_003667865.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296327218|gb|ADH10145.1| Two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59
           +KKV+IVED ++  +         GY  +   +G   L+L   ++H   ++I+DI L  +
Sbjct: 1   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+++S    +P+I +TA + + D     + G + Y++KP   SI +   K+ 
Sbjct: 61  DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117


>gi|229495757|ref|ZP_04389485.1| DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317331|gb|EEN83236.1| DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 969

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVEDN          +    Y      NG+E LE A++  PD+II D+ + E+ GLE
Sbjct: 711 HLLIVEDNRDIAAYIGSQLANH-YAISYAANGLEGLEKAQELVPDLIITDLMMPEMDGLE 769

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +Q++++  +  IP+I VTA   + +  +  + G +AY++KP +       ++K +
Sbjct: 770 LCRQVRKNEIISHIPIIVVTAKISEEERIKGIEAGADAYLAKPFNSDELRTRVEKLL 826


>gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
 gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
          Length = 227

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 73/122 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++++D    ++L +  +E +GYI   + +  E    A++ KP++I++D  L  IS
Sbjct: 1   MEEKILVIDDEMHIVELLKFNLEVNGYIVDYSLDSFEGYHKAKELKPNLILLDWMLPNIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K+I+ED +L++ PVI +TA  M+ D+ +  + G + YI+KP  +   +  I   +
Sbjct: 61  GIDVLKKIREDEDLKDTPVIMLTAKNMERDKVKGLEEGADDYITKPFGIKELLARINSVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 66/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   G+  ++  +G EA+++   Q    ++++D+ + ++ G 
Sbjct: 5   KILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVFFAQKDIALVLLDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I++     ++PVI +TA + + DE +    G + YISKP S  I +  ++  +  
Sbjct: 65  EVLRTIRK---YSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121


>gi|119900234|ref|YP_935447.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672647|emb|CAL96561.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1064

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 3/121 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN  N K+ R ++E  G+      +G EAL    Q   D+++MD ++ E+ G  
Sbjct: 803 RILLAEDNATNQKIARTMLERQGHRVHVAGDGAEALAALVQGDYDLVLMDCRMPEVDGFA 862

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I++    +    IP++A+TA AM+GD ER+   G + Y++KPI  +    T++ ++
Sbjct: 863 ATRAIRDGLGGARHAAIPIVAMTADAMEGDRERVLAAGMDDYLTKPIDAARLEATVRHWL 922

Query: 121 G 121
           G
Sbjct: 923 G 923



 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           +++++V+DN  + +    L+   G   L+  +G  AL L  +        D  I+D+++ 
Sbjct: 657 RRLLVVDDNASSREQLGLLLGAWGCELLEAADGDAALALLAREAETGGTIDGAILDLRMP 716

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G  + ++IK D  L  +P++ +T  AM+ D ER+R GG  AY++KP+   +    ++
Sbjct: 717 GMDGEALGRRIKADPALAHLPLLLLTPVAMRPDAERLRAGGFAAYLAKPVRADLLERALR 776

Query: 118 KYIGE 122
             + +
Sbjct: 777 TLLRQ 781


>gi|300866045|ref|ZP_07110777.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300335960|emb|CBN55935.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 352

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 65/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DNE+N  L    ++  G+      +G+ ALE+ R H  D++++DI + +++G ++
Sbjct: 8   VLVVDDNEVNRDLLARRLQRQGHKVQVAEDGILALEMMRSHPFDLVLLDIMMPQMNGYQV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K D +L+ IPVI ++A        R  + G E Y+SKP +  +    I   +
Sbjct: 68  LEHLKADDKLRYIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPVLLKARISACL 123


>gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 234

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    + + GY   +  N  E L++  +    ++++DI +  + GLE+
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGLEM 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      IP+I ++A +   D+      G + Y+ KP +       +K  +  
Sbjct: 66  CRKIRE---TNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120


>gi|171909724|ref|ZP_02925194.1| sensory box histidine kinase/response regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 835

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++ +DN +N ++ ++ +E  G       +G EAL+LAR+   +VI++D Q+  + G
Sbjct: 575 SARILVADDNPVNQRVLKNQLEYLGMQVTPCSDGAEALKLAREGGHEVILLDCQMPVMDG 634

Query: 62  LEITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            E T++I+E   L   + +P+IAVTA  M GD E   + G + Y+ KP+ +    + +  
Sbjct: 635 FEATRKIREWESLTGAKRVPIIAVTAHVMAGDAELCLEAGMDGYLPKPVEVDRLQQALLA 694

Query: 119 YI 120
           ++
Sbjct: 695 WL 696


>gi|186476911|ref|YP_001858381.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193370|gb|ACC71335.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 241

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     L RD +   G       +         + +PD+I++D+ +  + 
Sbjct: 1   MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDASSLERRIERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   ++++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 224

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED +   +L +  +   GY  L+  +G EALE+  ++   ++I+DI L  + 
Sbjct: 1   MSESILIVEDEDRMRELIKAYLRREGYSVLEAADGKEALEMFDRNSISLVILDIMLPLLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  +   I+E SE   +P+I +TA + + D+    + G + Y++KP S  +    +K  +
Sbjct: 61  GWTVCTNIREKSE---VPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|323700307|ref|ZP_08112219.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio sp. ND132]
 gi|323460239|gb|EGB16104.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio desulfuricans ND132]
          Length = 400

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M ++  V++V+DN LN+ L  D+++   Y  L   NG+ ALE+ R   PD+I++DI + E
Sbjct: 1   MSERATVLVVDDNRLNIDLLVDVLKDD-YKLLVALNGVSALEVIRHTLPDIILLDIMMPE 59

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E+ +++K D     +PVI +TA +   DE +    G   YI+KP++ +I    I+ 
Sbjct: 60  MDGYEVCRRLKSDERTSPVPVIFITAKSQTEDEAKGLALGAVDYITKPVNPAIVQARIRT 119

Query: 119 YI 120
           ++
Sbjct: 120 HL 121


>gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 236

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++MIVED+E    + ++ +E  GY      +G E LE  + ++  ++++DI L E+ 
Sbjct: 1   MGERLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+  +E  +IPV+ ++A   + D+ +  K G + YI+KP SL      I+ ++
Sbjct: 61  GFTLCKNIRWINE--DIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 334

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      L R  +   GY     R+G+  L+  R  +P ++++D+ L  I GLE+
Sbjct: 112 VVVVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRTLRPSLVLLDVGLPGIDGLEV 171

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++   +    PV+ VTA   + D     + G + Y++KP S    +  +   +  +
Sbjct: 172 CRRLRAADDW--TPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRRS 228


>gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D ++ +K  +  +           +G EALE  R +K D+I++DI L ++ 
Sbjct: 10  MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +QI+E      +P+I +TA     D+      G + YI+KP ++      +K  +
Sbjct: 70  GLSVCQQIRE---FSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAIL 126

Query: 121 GE 122
             
Sbjct: 127 RR 128


>gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1201

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K V++ +D+  N+      +E      +   +G EAL+   ++   DV+++D+ + ++ G
Sbjct: 1079 KTVLVADDDVRNIFSLSKALEQFNMTVIAALDGKEALQKLDENPGIDVVLLDMMMPQMDG 1138

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+E  + + +PVIAVTA AM GD E+  + G   YI+KP+ +   +  ++ ++
Sbjct: 1139 YETARKIREHYQWKNLPVIAVTAKAMTGDREKCIQAGASDYITKPVDIDQLISLLRVWL 1197



 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IVED+    K   D     GY  +    G E L+LA  + P  I++DIQL  +SG 
Sbjct: 810 KTILIVEDDPNFAKSLLDYARKKGYKGIVAVQGDEGLKLASVYNPLGILLDIQLPVMSGW 869

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME---TIKKY 119
           E+   +K + + + IPV  +++  +   +      G   ++ KP++     E    I+  
Sbjct: 870 EVMDALKANPKTRPIPVHIMSSHKL---KNESLLKGAIDFVDKPVAFEQLQEVFKKIEYV 926

Query: 120 IGE 122
           +  
Sbjct: 927 LNR 929



 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 51/103 (49%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KKV+IVEDN  + K     +ET    +    N  E ++  ++ + D +I+D+ + +    
Sbjct: 932  KKVLIVEDNPKHAKALAYFLETFNITSELKSNITEGIDALKRKEVDCVILDMGVPDSKAY 991

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            E  +  K+D  L+ +P+I  T  ++   EE   K   ++ I K
Sbjct: 992  ETLEVAKKDPGLENLPIIIFTGKSLSMSEELKIKKYADSIIVK 1034


>gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
 gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
          Length = 1400

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 56/116 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+I +DN    +    L+  +G+      +G  AL+ AR   PD+II D+ +  + GL
Sbjct: 647 ARVLIADDNADMREYLARLLRGAGHRVSAVTDGYAALDRARAETPDLIISDVMMPGLDGL 706

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +   ++ D     IPV+ ++A A +       + G + Y+ KP S +  +  ++ 
Sbjct: 707 RLVADLRADGRTAGIPVLLLSARAGQEASIEGLEAGADDYLVKPFSAAELLARVQT 762


>gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1186

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 10/126 (7%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++ ED+  N    + ++E  G+I L  +NG EALE  ++H  D I+MDI +  + G+E
Sbjct: 1056 RVLLAEDDPSNRFFMQKVLEREGHIPLIAQNGQEALEQFQKHAFDCILMDINMPVMDGME 1115

Query: 64   ITKQIK----------EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
             TK+I+          ED     IP+IA+TA AM GD ER  + G   Y+SKP+ +    
Sbjct: 1116 ATKEIRRLEAGGSRQEEDGTYPAIPIIALTAHAMGGDRERFLEMGMNDYLSKPVQVQELR 1175

Query: 114  ETIKKY 119
              + K 
Sbjct: 1176 TALDKI 1181


>gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   +++VED++   +L +  + T  Y  +   +G+E +    +   D+I++D+ +  +
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G E++K I+  S    +P+I +TA   + D+ +    G + YI+KP S  + +  ++  
Sbjct: 61  NGFEVSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 225

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           KV++V+D E   KL  D ++   +  L+  +G EA++L   +    ++I+D+ + ++ G 
Sbjct: 5   KVLVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDLFFEEKDISLLILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K I+E S    +PVI +TA + + DE R  + G + YISKP S  I +  ++  +  
Sbjct: 65  AVLKSIREHSR---VPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|257486369|ref|ZP_05640410.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330987453|gb|EGH85556.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331010647|gb|EGH90703.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 645

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y++KP   +   + + +++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQLLHRWL 634


>gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CNPAF512]
          Length = 227

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V +VED E    L R  +E  G+       G EA    ++  PD++I+D  L  +S
Sbjct: 1   MIPRVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +P+I +TA   + +  R    G + Y+ KP S    +  +K  +
Sbjct: 61  GIELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAML 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|28869899|ref|NP_792518.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            tomato str. DC3000]
 gi|28853144|gb|AAO56213.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            tomato str. DC3000]
          Length = 1170

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED++L       LI              +AL+L R H  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDDLQRDSIARLIGDDDIEITAVGFAQQALDLLRDHIYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|224370278|ref|YP_002604442.1| two-component response regulator [Desulfobacterium autotrophicum
           HRM2]
 gi|223692995|gb|ACN16278.1| two-component response regulator [Desulfobacterium autotrophicum
           HRM2]
          Length = 244

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++++ED +   +  +  +   GY      +G+  LEL RQ  PD+II+DI L  I GL
Sbjct: 7   KRILVIEDEQHIAEGIKLNLNMQGYGVRIAPDGVAGLELWRQWHPDLIILDIMLPMIDGL 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+ + E  ++PV+ ++A     D  R  + G + Y++KP  L  F+  + + +  
Sbjct: 67  TVLKKIRSEDE--KLPVLILSAKGNAEDRVRGLRCGVDDYLAKPFDLDEFLLRVDRLLAR 124


>gi|182412781|ref|YP_001817847.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177839995|gb|ACB74247.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 372

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D E N+++  D++   GY  +   +G +AL        D+I++D+ +  + G 
Sbjct: 11  ARILVVDDQETNLRVLGDMLAHLGYDIVPALDGEQALRRLSSRPVDLILLDVLMPGLDGF 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++I+ +    +IP+I ++A   K    R  + G   YI+KP + +  +  ++ ++
Sbjct: 71  EVCRRIRSNVAWIDIPIIFLSAADDKSLIVRALESGGVDYITKPFNAAELLSRVRTHL 128


>gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 63/120 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D      + R  +ET+GY  L+      A       +PD++++D  L   SG+E
Sbjct: 5   KVLIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIVDDRPDIVLLDWMLPGGSGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++IK     Q++PVI +TA A + +  +    G + YI+KP +L   +  IK  +  A
Sbjct: 65  LLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYITKPFALRELLARIKALLRRA 124


>gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I +DN     +     +    + +   +G EA+ + RQ+ P V+++D+ + +  G
Sbjct: 1   MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+  S   ++PVI +TA     ++      G + YI KP S S  M  I+  + 
Sbjct: 61  YEVCRKIRAKS---DVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 234

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQ 55
           + +++IV+D++       + +   G+      +G +A++     +       D++++D+ 
Sbjct: 1   MPRLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLM 60

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           L  + GL++ + ++        P++ V+A   + D     + G + Y+ KP  L   +  
Sbjct: 61  LPGVGGLDVCRHLRRSD--PHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVAR 118

Query: 116 IKKYIGEA 123
            +  +  +
Sbjct: 119 CRALLRRS 126


>gi|319795506|ref|YP_004157146.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315597969|gb|ADU39035.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 234

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED      + +D +  SGY      +G  ALE      PD+ ++DI L  + G
Sbjct: 1   MTRIVVVEDEIDIASVVQDYLRHSGYETAHFADGQSALESIVAAPPDLTLLDIMLPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++ +E +     P+I +TA   + D     + G + Y+ KP S    +  ++  + 
Sbjct: 61  IEVLRRAREHTAH---PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
 gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
          Length = 226

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED      + +D +    Y       G +A+E+  + KP ++I+D+ L  ++G
Sbjct: 1   MSRILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI + I+       IP++ ++A   + D+ +    G + YI+KP      +  +   + 
Sbjct: 61  YEICQNIR---IKSTIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|119487283|ref|ZP_01621034.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119455838|gb|EAW36973.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 519

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 63/115 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D   N++L +D++   GY      +G  AL    + +PD+I++DI + ++ G 
Sbjct: 14  AKILVVDDLPENLRLLQDILVQQGYDVRFANSGKLALLSLSRFQPDLILLDIMMPDLDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + +Q+K + E + IPVI ++A     ++ +  + G   YI+KP      +  I+
Sbjct: 74  TVCQQLKANRETENIPVIFMSALDDGSNKVKGFQVGGNDYITKPFITEEVLARIR 128


>gi|115377600|ref|ZP_01464797.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820429|ref|YP_003952787.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365401|gb|EAU64439.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393501|gb|ADO70960.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1020

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN    +    L+    +      +G  AL++A    PD+++ D+ +  + G  
Sbjct: 634 RILLADDNADMREYVARLLSPR-WTVEAVADGAAALDVALARPPDLVLTDVMMPRLDGFG 692

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + ++  +  + IPVI ++A A +       + G + Y+ KP S    +  +   +
Sbjct: 693 LLRALRSQASTRAIPVIMLSARAGEEARVEGMEAGADDYLVKPFSARELLARVSARL 749


>gi|30018772|ref|NP_830403.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218232832|ref|YP_002365383.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218895640|ref|YP_002444051.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899271|ref|ZP_04063534.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228906332|ref|ZP_04070217.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228957004|ref|ZP_04118779.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228963678|ref|ZP_04124822.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229042443|ref|ZP_04190189.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108192|ref|ZP_04237814.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126017|ref|ZP_04255040.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143310|ref|ZP_04271741.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296501346|ref|YP_003663046.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894313|gb|AAP07604.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218160789|gb|ACK60781.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218544181|gb|ACK96575.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228640117|gb|EEK96516.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657442|gb|EEL13257.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675208|gb|EEL30430.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726897|gb|EEL78108.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228796026|gb|EEM43490.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228802635|gb|EEM49477.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228853355|gb|EEM98127.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228860302|gb|EEN04699.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296322398|gb|ADH05326.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q + D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPSMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|82617296|emb|CAI64201.1| probable response regulator (CheY-like receiver domain and
           DNA-binding HTH domain) [uncultured archaeon]
          Length = 170

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    +      +E   Y  +   +G EAL       PD+I++D+ L +++G E
Sbjct: 49  KILVVDDEPDTLLPLTRALEADNYAVVGAVDGAEALIKVSNETPDLILLDLMLPKLNGYE 108

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++KE+   + IPVI ++A     D+    + G + Y++KP  L      I+  +  
Sbjct: 109 VCMKLKENPATRHIPVIMLSAKGEIKDKVLGIEIGADDYVTKPFDLLELKARIRALLRR 167


>gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
 gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
          Length = 236

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63
           ++IV+D     ++    ++ +G+  LQ  +  +A ++    +P +I++D  L   +SG++
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMLPGGVSGVD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K D  L EIPVI +TA   +  + +    G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125


>gi|330959044|gb|EGH59304.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 652

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 526 RKILLVEDNPVNRTVVQAMLHQMGCEVDVAVDGAEAVLKAGTGYYALILMDCRLPVMDGY 585

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L  IP+IA+TA A++GD +   + G + Y++KP   +   + + +++
Sbjct: 586 EATRRIRQLSGLDRIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQKVLLRWL 643


>gi|318060148|ref|ZP_07978871.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333026707|ref|ZP_08454771.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746559|gb|EGJ77000.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 227

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+E   +     +   G+      +G E L       PDV+++D  L  + G
Sbjct: 1   MSRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++   E   +P++ VTA     D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  LEVCRRLR-TPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     +     +   GY      +G +AL+L R  +PD +I+D+ +  + GL+
Sbjct: 2   HILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDVTMPVLGGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + ++   +    PV+ +TA A   D       G + Y++KP +L   +  ++  +  
Sbjct: 62  ACRALRASGDT--TPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRR 118


>gi|213967062|ref|ZP_03395212.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            tomato T1]
 gi|301385247|ref|ZP_07233665.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            tomato Max13]
 gi|302063302|ref|ZP_07254843.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            tomato K40]
 gi|302130188|ref|ZP_07256178.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            tomato NCPPB 1108]
 gi|213928384|gb|EEB61929.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            tomato T1]
          Length = 1170

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEMRFAQILFDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED++L       LI              +AL+L R H  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDDLQRDSIARLIGDDDIEITAVGFAQQALDLLRDHIYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 225

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D+    +L R  ++  G+  L+ ++G EA  L  Q   D+ I+D+ +    G E+
Sbjct: 3   ILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETVDLAIVDVMMPNKDGYEL 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+      +IPVI +TA     D+E+  + G + Y+ KP      +  IK  +  
Sbjct: 63  CREIR---RYYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRR 117


>gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905]
 gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905]
          Length = 247

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED +   +     ++  GY       G E L LA     DV+++D+ L  I+G+
Sbjct: 25  KKILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVMLPGINGI 84

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++++  S+   +P+I +TA     D       G + YI KP ++   +  I+  +  
Sbjct: 85  EICRRVRTQSQ---VPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR 141

Query: 123 A 123
           A
Sbjct: 142 A 142


>gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9902]
 gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9902]
          Length = 245

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 54/116 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E    A+Q  PDV+I D+ +  + G  
Sbjct: 20  RLLLVDDEPGLRTAVQAYLEDEGFDVTTAVDGEEGFTKAQQMLPDVVISDVMMPRLDGYG 79

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + K++++D  L   PVI +TA  M  D  +    G + YI KP      +  ++  
Sbjct: 80  LLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNV 135


>gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 69/120 (57%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +  +GY  L+ ++G EA++     K  +++++D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSTKGINLLVLDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I++   + ++P+I +TA   + DE    + G + YISKP S  I +  ++  +  
Sbjct: 65  EVVKEIRK---VSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRR 121


>gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 65/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +L    ++++G+  +   +G +A    ++ +PDV+++D  L ++SGL +
Sbjct: 8   ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+E  E++ +PVI +TA  ++ D+      G + YI+KP S    +  I   +  
Sbjct: 68  LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR 125


>gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
 gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
          Length = 230

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|225570853|ref|ZP_03779876.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
           15053]
 gi|225160315|gb|EEG72934.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
           15053]
          Length = 224

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I +D +  ++L +D  E  GY  L+  NG E LE   + KPD+I++D+ +  I 
Sbjct: 1   MEYKILIADDEQGIIQLLKDYFEIQGYRVLEALNGAEVLEKLAR-KPDIILLDVSMPGID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+        P++ +TA   + D     K G + YI KP S+      ++ ++
Sbjct: 60  GFEVCRRIRSHI---SCPILFLTARIEEQDRINGLKLGGDDYIMKPFSIEELGARVEAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
 gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
          Length = 234

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 65/120 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED +    + R  +E + Y  ++  N  +A  L    +PD++++D  L   SGLE
Sbjct: 5   TVLVVEDEKAIRDMLRMALEVAKYRFIEAENIRDAHVLIVDERPDIVLLDWMLPGGSGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K +   +EIPVI +TA A + +  +  + G + Y++KP +    +  I+  +  +
Sbjct: 65  LLRRLKREDNTREIPVIMLTAKAAEDNVIQGLEVGADDYVTKPFAPRELIARIQALLRRS 124


>gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 227

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V +VED E    L R  +E  G+       G EA    ++  PD++I+D  L  +S
Sbjct: 1   MIPRVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +P+I +TA   + +  R    G + Y+ KP S    +  +K  +
Sbjct: 61  GIELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAML 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 232

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +    L+   GYI     +G    E A+    D++I+D  L   +GLE
Sbjct: 2   RILLVDDEVELTEPLSRLLTREGYIVDAAFDGTIGSEYAQAGSYDLLILDWMLPGKTGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I +Q++   +    PV+ +TA     D  +    G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQQLRRQGKT--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 119


>gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
          Length = 234

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 227

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED     +L RD +E + +      +G + LE A     D++I+DI L ++SG
Sbjct: 1   MKKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ KQI+     ++IP+I V+A   + D+ R    G + YI+KP S    +  +K ++ 
Sbjct: 61  FEVCKQIRA---AKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228919441|ref|ZP_04082806.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840228|gb|EEM85504.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 223

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL L  Q + D+I++D+ +  + G
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVMMPSMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 61  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
          Length = 231

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 70/124 (56%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+++ ++I++D++  ++L    +   GY   +  +G EAL +   H+ D++I+DI + + 
Sbjct: 1   MMERNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLHQIDLMILDIMMPKR 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +GLE+ +Q++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  
Sbjct: 61  NGLEVCQQVREEN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKAL 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 225

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED     +  +  +  SG++     NG + L +A +   DVII+D+ L  + G  
Sbjct: 2   RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+  SE    PV+ +TA     D  R  + G + Y+ KP + +  +  I++ + ++
Sbjct: 62  VIKSIRSKSET---PVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQS 118


>gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 236

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEI 59
           M   ++IVED           ++  G+ A     G E + +A  +  PD++++D+ L  +
Sbjct: 1   MSVNILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLMLPGV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ ++++E+   + +PVI +TA   + D+    + G + Y+ KP  +   +  I+  
Sbjct: 61  SGIEVCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAI 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22]
 gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 239

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+    ++    ++ +GY   +  +G  AL  A  H+PD++++D+ L  + GLE+ 
Sbjct: 2   LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPAALARAAAHRPDLVVLDLMLPGMDGLEVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           ++++       +PVI +TA   + D     + G + Y++KP S    +  ++  +  A
Sbjct: 62  RRLRARGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRA 116


>gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 239

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  KV++V+D+     L    +   G++     NG +A  L  +    ++++D+ L  
Sbjct: 1   MSQQYKVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL I ++++E     +IPV+ +TA   + D     + G + Y+ KP +    +  I+ 
Sbjct: 61  EDGLSICRRLRE--AGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRA 118

Query: 119 YIGE 122
            +  
Sbjct: 119 VLRR 122


>gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
 gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
          Length = 226

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN     +        G       +G+E  E  ++   D++I+D  L  + G+ 
Sbjct: 2   RILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGHDLLILDWMLPGMDGIA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E  E   +P+I +TA   + D+    + G + Y++KP S    M  IK     
Sbjct: 62  LCRKIRE--EGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRR 118


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+EL      + +    Y      +G  A +L   ++ D+I++DI L ++ G+ 
Sbjct: 2   KILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVLPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+  S  + +P++ +T      D+      G + Y+ KP      +  ++  +  
Sbjct: 62  LCKKIR--SSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118



 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++V+D+   ++L + L+   G   +   +  +  E   + +PD++I+DI++  +
Sbjct: 371 MNKTKILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDIEMPTM 430

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+E+ K I+   + +E+P++ +T  +      ++   G + ++SKPI +S     I   
Sbjct: 431 SGIELCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNR 490

Query: 120 IGE 122
           +  
Sbjct: 491 LER 493



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++ +D+ +  +   +L+   GY  L   +G +A+  A    PDVI++D+ +  ++G E 
Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1123

Query: 65   TKQIKEDSELQEIPVIAVT--------AFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
               +K+ S+ ++IP++  +        +   +       K     ++SKP+  +    ++
Sbjct: 1124 MAGLKKCSDTRDIPIVICSVYKSSQNNSNYQQDSNSEGVK--FADWLSKPVEETDLFNSL 1181

Query: 117  KKYI 120
            +K +
Sbjct: 1182 RKVV 1185



 Score = 69.4 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++I+ED+     L   L           + G EA+ L+++  PD++I+D+ L E  G  
Sbjct: 1193 KILIIEDDHDLADLLATLFGRHEIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1252

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYIGE 122
            +   +K+  +L  +PV+  +A  +   E    K G   + +K  ++   F + +   +  
Sbjct: 1253 VVDWLKQHDQLFSVPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTTQEFEQRVMDLLQR 1312


>gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 870

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++I ED+    ++   ++    Y      +G +A++  +Q   D+IIMD+Q+  + G 
Sbjct: 750 RRLLIAEDDPTIRQVLGTMLARFEYQVEYAEDGHQAVQRWQQSPYDMIIMDVQMPGLDGF 809

Query: 63  EITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+ I+  E      +P++A+TA AMK DE+R    G + YISKPI     +  I   +
Sbjct: 810 EATRAIRQKELERGGRLPILAMTAHAMKEDEQRCIAAGMDDYISKPIDFRECLGKIGALL 869

Query: 121 G 121
           G
Sbjct: 870 G 870


>gi|253682308|ref|ZP_04863105.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
 gi|253562020|gb|EES91472.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
          Length = 232

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D++   +  +  ++  G    + ++G++AL + ++ +  +I+MDI + ++ G++ 
Sbjct: 6   VLVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKA 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E    ++IP+I ++A +   D+      G + Y++KP +    +  +K  +  
Sbjct: 66  TFKIREK---KDIPIIMLSAKSEDTDKVLGLNIGADDYVTKPFNPLELIARVKSQLRR 120


>gi|298492712|ref|YP_003722889.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298234630|gb|ADI65766.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 437

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 60/116 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN  N+K+  + I+  G+ AL   +G  A+       PD+I++D+ +  + G E 
Sbjct: 12  VLLVDDNPNNLKVLSEAIQRCGWKALMATDGESAIRQTEYAHPDLILLDVMMPGLDGFET 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +      PVI +TA     D+ +  + G   YI+KP      +  +K ++
Sbjct: 72  CRRLKANPLTYNTPVIFMTALCDPTDKVKGLEIGAVDYITKPFQHEEVIARLKLHL 127


>gi|28868489|ref|NP_791108.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968377|ref|ZP_03396521.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato T1]
 gi|301384643|ref|ZP_07233061.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058904|ref|ZP_07250445.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato K40]
 gi|302133017|ref|ZP_07259007.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28851727|gb|AAO54803.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927015|gb|EEB60566.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato T1]
 gi|331015226|gb|EGH95282.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 705

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 57/119 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D+     L   L++  GY  L   +G +AL +     PD+I++DI +  + G 
Sbjct: 6   ATILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDARAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+   +K       IP+I ++A   +G      + G E Y+SKP+  +     ++  + 
Sbjct: 66  EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLR 124


>gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 227

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    ++   ++   G       +G  AL   R+ +PDV+++D+ L  I GLE
Sbjct: 6   RVLVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAFRETRPDVVLLDVMLPGIDGLE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ +S    +P++ +TA     D     + G + Y+ KP      +  ++  +  
Sbjct: 66  VCRRIRAESG---VPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRR 121


>gi|317475518|ref|ZP_07934781.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908349|gb|EFV30040.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1347

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN    +   + +    Y  L+ +NG +ALE+ ++ + ++I+ D+ +  + GL++
Sbjct: 1101 ILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIMKEQEINLILTDVMMPVMDGLQL 1159

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             KQIK++     IPVI ++A A   ++      G + YI KP SL++    I+    
Sbjct: 1160 CKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFR 1216


>gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
 gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
          Length = 1034

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 72/119 (60%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              +++ EDNE+ + +  D +    +  +  RNG EA+E A++++P +I++DIQ+  + GL
Sbjct: 900  ATILLAEDNEMTIDVVSDYLHYLNFEVVVARNGYEAIERAQEYRPALILIDIQMPVMDGL 959

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++++     +  P+IA+TA AM+GD ER    G   Y+SKPISL   +E I++ + 
Sbjct: 960  HAIRELRALPAFRTTPIIALTALAMQGDRERCLAAGANEYLSKPISLHGLVEVIQQILR 1018


>gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 241

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   +L +  +E   Y+  +  +G EALE A  +  DVI++D+ L    G+E
Sbjct: 9   RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + K+I+E    +  P++ +TA   + +  +  + G + YI KP S    +  +K
Sbjct: 69  VCKEIREQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119


>gi|218128694|ref|ZP_03457498.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
 gi|217989149|gb|EEC55464.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
          Length = 1347

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN    +   + +    Y  L+ +NG +ALE+ ++ + ++I+ D+ +  + GL++
Sbjct: 1101 ILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIMKEQEINLILTDVMMPVMDGLQL 1159

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             KQIK++     IPVI ++A A   ++      G + YI KP SL++    I+    
Sbjct: 1160 CKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFR 1216


>gi|161520008|ref|YP_001583435.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353810|ref|YP_001949437.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160344058|gb|ABX17143.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189337832|dbj|BAG46901.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 246

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E   +     PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRSVLDDGAPDLIVLDLMLPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + + +PV+ +TA + + D     + G + Y++KP ++   +  I+  +  A
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRA 124


>gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++ ++D    + L    +E  G+      +  +AL    +   D++++DI + E+ G
Sbjct: 1   MKTILCIDDEPRMLDLLTLYLEP-GFQCRAMSSIQDALIYLEEEHVDLVLLDIMMPEMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I++      +P+I +TA     D  +    G + YI KP      +  I   + 
Sbjct: 60  FQVCEEIRK---FWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Frankia alni ACN14a]
 gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Frankia alni ACN14a]
          Length = 240

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    + L R  +   G+  L    G  AL+LA Q +PD++I+D+ L ++ G E
Sbjct: 6   RVLVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVMLPDVDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++     Q +PV+ +TA     D+      G + Y++KP ++   +  ++  +  
Sbjct: 66  VCRTLRA--GGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRR 122


>gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 222

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 70/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED++   KL  + +   G+  ++  +G+ A+E  + +  D+I++D+ L +++G
Sbjct: 1   MNKILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKFKNNNIDLIVLDLMLPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +  +I+E   + ++ +I +TA + + D+    + G + YI+KP S  + +  IK  + 
Sbjct: 61  ITVCSKIRE---ISDVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218440571|ref|YP_002378900.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7424]
 gi|218173299|gb|ACK72032.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7424]
          Length = 380

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D+    KL    +  S +  +   NG E +E A + +PD+II D  +  + G
Sbjct: 1   MAQILIIDDDSAIQKLLSRALTRSHHEVILASNGTEGIEKAIKLRPDLIICDWLMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ +Q+K   EL     I +TA     D       G + ++ KPI ++     ++  + 
Sbjct: 61  IQVCRQVKMIPELSTTFFILLTALGSVEDRIIGLDAGADDFLCKPIEINELQARVRSGLR 120


>gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118]
 gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I +D+     L R  +   G+  LQ  +G     L  +   D+I++D+ +    GL 
Sbjct: 10  KILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKSLTRLLVREPVDLIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 70  ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126


>gi|71908559|ref|YP_286146.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71848180|gb|AAZ47676.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 777

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D  +N ++ + L+E   +      NG EAL LA  +  D+I+MD+Q+  + GLE
Sbjct: 643 RVLLVDDEPINREITQILLEDLHFRIDSAENGEEALALACIYPYDLILMDMQMPVMDGLE 702

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+   +     +IA+TA A   D ER    G + + +KPI    F   I + +
Sbjct: 703 ATRRIRALPDGHRFLIIAMTANAFSEDRERCLAAGMDDFTTKPIDPEAFFSLIHRQL 759


>gi|29346092|ref|NP_809595.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29337986|gb|AAO75789.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 245

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ ED           ++  G+      +G     + ++   D++I+DI + +I+G
Sbjct: 22  MAKILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKING 81

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+    ++    Q  PVI +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 82  LELCHLYRQMFGYQA-PVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 140

Query: 122 E 122
            
Sbjct: 141 R 141


>gi|39936196|ref|NP_948472.1| CheY-like response regulator receiver [Rhodopseudomonas palustris
           CGA009]
 gi|192291912|ref|YP_001992517.1| response regulator receiver protein [Rhodopseudomonas palustris
           TIE-1]
 gi|316933636|ref|YP_004108618.1| response regulator receiver protein [Rhodopseudomonas palustris
           DX-1]
 gi|39650051|emb|CAE28574.1| response regulator receiver (CheY-like protein) [Rhodopseudomonas
           palustris CGA009]
 gi|192285661|gb|ACF02042.1| response regulator receiver protein [Rhodopseudomonas palustris
           TIE-1]
 gi|315601350|gb|ADU43885.1| response regulator receiver protein [Rhodopseudomonas palustris
           DX-1]
          Length = 121

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/121 (66%), Positives = 104/121 (85%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T NG EAL+L R+ +PD+I+MDIQL ++S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYQTAGTSNGYEALDLVRKLRPDLILMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ IK+D+EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET++++I
Sbjct: 61  GLEVTRWIKDDAELRHIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1261

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 68/118 (57%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++VEDNE+N ++  +L+   G+      NG+ ALE    +   +++MD+Q+ E+ G+
Sbjct: 925  ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T  I+++    ++P++A+TA  M+GD ER  + G   ++ KPI        +  +I
Sbjct: 985  EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKLLHWI 1042



 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA----RQHKPD-VIIMDIQLQ 57
           K+V++V+DN+    + +DL+E   ++     +G EAL       R++ P  ++ +D Q+ 
Sbjct: 771 KRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMP 830

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + GLE+ +++K      +  +  VTA+  +    + +  G +  + KPIS S+  +++ 
Sbjct: 831 NMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLA 890

Query: 118 KYIGE 122
           + +G+
Sbjct: 891 RVLGD 895


>gi|330969228|gb|EGH69294.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 705

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G  AL + ++  PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K +     IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2483

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV++V+D+  N+     ++E  G   +   NG  A+E+  +++  DV++MDI + E+ G
Sbjct: 2363 KKVLVVDDDMRNIFALTSVLENQGLQVIFAENGRAAIEMLEKNRDVDVVLMDIMMPEMDG 2422

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             E  + I+++ +  ++P+IA+TA A+K D E+    G   Y+ KP+     +E I+
Sbjct: 2423 YETMQAIRQNLQYAQLPIIAITAKALKDDREKCMAAGASDYLPKPVDTDKLIELIR 2478



 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 4    KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++ I+ED+    ++   +    G+  L    G   L +A ++ P  I +DIQL  + G 
Sbjct: 2093 RILLIIEDDLKFARIMAQMAREKGFKVLVASRGDSGLAMANEYLPHAITLDIQLPVVDGW 2152

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKY 119
             + +++K +   + IPV  ++      D+      G   Y++KP+S   L      +  +
Sbjct: 2153 SVLERLKRNGRTRHIPVHVIS----VMDKHLGNTHGAFGYLTKPVSKEGLERVFSQLAHF 2208

Query: 120  IGE 122
            +  
Sbjct: 2209 LER 2211



 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 2    LKKVMIVEDNELNMKLFRDLI-ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
             ++++++ED+++       L+ E S         G EAL    + + D +++D+ L ++ 
Sbjct: 2213 SRRLLLIEDDDIQRDSLVKLLSEGSDVEVTGVATGQEALHKLEEGEYDCLVIDLLLPDMD 2272

Query: 61   GLEITKQIKEDSELQEIPVIA-----VTAFAM 87
            G ++ +++K     +++P++      +TA   
Sbjct: 2273 GAKLVEEVKTQPRFRDLPIVIYTGKELTAKDE 2304


>gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes]
 gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes]
 gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes]
 gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes]
 gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes]
 gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes]
 gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E+T
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 62  KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116


>gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 235

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D      L +  +E +G++     +GM  L+LA +    +I++D+ L E+ 
Sbjct: 1   MKDKIIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDAALIVLDLMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K++++       P++ +TA   + D+    + G + Y++KP S    +  +K  +
Sbjct: 61  GLEVCKRLRQQKI--NTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 234

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
          Length = 234

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED E   K  +  +   GY  +   +G+  L  AR  +PD++++D  +  ++G+E
Sbjct: 7   RILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWMMPGLTGVE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++    +  +PVI +TA     D       G + Y+ KP S+   +  ++ ++  
Sbjct: 67  VCRRLRATGAM--MPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRR 123


>gi|119488955|ref|ZP_01621890.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119454911|gb|EAW36054.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 262

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY   Q  +G++   LA Q  PD+II+D+ L ++ G
Sbjct: 1   MPRILVIDDDPAIAELVAINLEMAGYEVSQAEDGIKGQALALQLLPDLIILDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IP++ +TA     ++      G + Y++KP  L   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTSDIPIVMLTALGQTQNKVEGFNSGADDYLTKPFELEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++IVED+    +L RD +E + Y      +G   L+ A Q    +I++D+ L +  G
Sbjct: 1   MKRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ + ++    ++ +P+I V+A     D+ R    G   YI KP + S  +  +K  I
Sbjct: 61  FQVCRNLRA---VKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQI 116


>gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
 gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
          Length = 232

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M +  ++IV+D+   ++L    ++  G+   +  NG+EAL++   +   + I+DI +  +
Sbjct: 1   MKQHSILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSNDIQLTILDIMMPAM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ ++I+E      IPV+ ++A   + D+      G + YI+KP S+   +  +K  
Sbjct: 61  DGIEVCRRIREQ---YNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|222082591|ref|YP_002541956.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727270|gb|ACM30359.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 240

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 2   LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +++   V++V+D++    L    +  +G        G E  +  R    D++++DI +  
Sbjct: 1   MQRTPHVLVVDDHKEIRDLLAKYLAKNGLRVSTANGGAEMRQQLRTATIDLVVLDIMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL + + +++      +P++ +TA + + D     + G + Y++KP +    +  I+ 
Sbjct: 61  EDGLSLCRSLRQ---TSMVPIVLLTAVSDETDRIIGLELGADDYVTKPFNPRELLARIRA 117

Query: 119 YIGEA 123
            +  A
Sbjct: 118 LLRRA 122


>gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 653

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 74/118 (62%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+  N  L   L+ T G++    +NG EALE+ ++  P +I MDI++  + GLE
Sbjct: 446 RILVVEDHADNRCLLVTLLATIGFLVKSAQNGQEALEICQEWHPHLIWMDIKMPLMDGLE 505

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T++I+   ++ +  +IA+TA A   D+ER    GC+ ++ KP + +I +E + +++G
Sbjct: 506 ATQRIRAMPQIPQPVIIALTANAFDEDKERALTCGCDDFLHKPCNETIILEKMTQHLG 563


>gi|330880822|gb|EGH14971.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 636

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCKVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y++KP   +   + + +++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQVLHRWL 634


>gi|320328955|gb|EFW84954.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            glycinea str. race 4]
          Length = 1170

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 94.0 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 217

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED E   K+ +  +E  G+   +  +G EA+E  +     V+I+D+ L +  G  
Sbjct: 2   KILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++     + PVI +TA     D+    + G + Y+ KP+S    +  +K  +  
Sbjct: 62  VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117


>gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
 gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
          Length = 226

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+   +++  D +   GY+  +  N  EA    + + PD++I+D+ +    
Sbjct: 1   MSQKILVVDDDLEILEMLYDALNDEGYLVYKASNSFEARSQLKVN-PDLMILDVMMPGQD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K+I+    +   P+I +TA   + D  +    G + Y++KP SL      +  ++
Sbjct: 60  GFEFCKEIRS---VVSCPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLRELRARVAAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|225017492|ref|ZP_03706684.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
 gi|224949731|gb|EEG30940.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
          Length = 237

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D E    + R   E  GY+  +  +GMEA++L R    D++I+D+ + E+ G 
Sbjct: 17  QHILIVDDEEKIRAIIRKYAEFEGYLVSEAADGMEAVKLCRDRDFDILILDVMMPELDGF 76

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I++    +  PV+ ++A   + D+    + G + Y+ KP S    M  +K  +  
Sbjct: 77  STCREIRK---FKNTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKAILNR 133

Query: 123 A 123
           +
Sbjct: 134 S 134


>gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1382

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 71/118 (60%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV++VEDNE+N  L  +L+   G +     NG + +   R    D+++MDIQ+  + GL
Sbjct: 946  RKVLLVEDNEINRDLAIELLSDLGLLVSIAENGQDGVARVRADPFDLVLMDIQMPVMDGL 1005

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              TK I+ D   +++P+IA+TA AM GD ER  + G   +I+KPI+     +T+ +++
Sbjct: 1006 TATKLIRADERFRDLPIIAMTAHAMSGDRERSLEAGMNDHITKPINPGHLTDTLIRWM 1063



 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++++D   N+ L  D+  ++ Y  L    GM  LE+A    PD+I++D+ +  I G E
Sbjct: 1225 RILVIDDEPSNIDLLADIFSST-YEVLAAEEGMGGLEIAATSMPDLILLDVMMPGIDGYE 1283

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K +     IPVI +T       E    + G   +++KPI  +     +  +I
Sbjct: 1284 VCRRLKAEPLTSAIPVIFITGLGDDASETHGLELGAVDFVTKPICPATVRARVSNHI 1340



 Score =  113 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 73/128 (57%), Gaps = 6/128 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQL 56
            K+V+IV+D++    +   ++  +G  A+ T++G EA+ +  +        D+++MD ++
Sbjct: 797 SKRVLIVDDSDSARDVLLAMLCANGINAIATKSGEEAMAVLAEASQAGTPFDLVLMDWRM 856

Query: 57  QEISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             + G+E + +IK D+ L +IP ++ V+AF  +   E    G  + ++ KP++ S+ ++T
Sbjct: 857 PGMDGIEASHRIKADATLSQIPSILMVSAFGREEMAEGSLGGDLDGFLIKPVNESVLIDT 916

Query: 116 IKKYIGEA 123
           I +  G A
Sbjct: 917 ISEMFGGA 924


>gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 238

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG  AL+ AR+ +PD II+D+ +  + G 
Sbjct: 12  ARVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 72  GLLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 129

Query: 123 A 123
           +
Sbjct: 130 S 130


>gi|317472204|ref|ZP_07931533.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900293|gb|EFV22278.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 7/124 (5%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   K++IV+D +  + + +  +E  GY      N  EAL+    + PD+I++DI +  
Sbjct: 1   MKENYKILIVDDEQSILDMLKLQLEFEGYTVFIACNAKEALDKL-SYSPDIILLDINMAG 59

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++GL++   I+   +    P+I +TA   + D+      G + YI+KP S++  +  I  
Sbjct: 60  MNGLDLCVSIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISA 116

Query: 119 YIGE 122
           ++  
Sbjct: 117 HLRR 120


>gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E        L+   G+ A     G  ALE   ++  D++++D+ L  +SG
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ+++ S    +PVI VTA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|307153190|ref|YP_003888574.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
 gi|306983418|gb|ADN15299.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
          Length = 589

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 62/116 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED     +L  +L+  + +  ++  +G + +E A    PD+I+ DI +   +G
Sbjct: 1   MSKILVIEDELSIRELINELLTLADFEVVEAEDGQQGIEQALSTLPDLILCDIMMPYKNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E+ ++++   E + IP I +TA   K D  +    G + Y++KP +    ++TI 
Sbjct: 61  YEVLQELQCHPETESIPFIFLTAKGTKFDIRQGMNLGADDYLTKPFTEDELLQTIN 116


>gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1]
 gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1]
          Length = 1049

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ EDN  N ++ + +++  G  A    NG EA+E  +    D+++MD+Q+ E+ GL
Sbjct: 788 ARILLAEDNITNQQVAQGILKKLGLSADAVANGREAIEALKTLPYDLVLMDVQMPEMDGL 847

Query: 63  EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T+QI+        + IP+IA+TA AM+GD E+    G   Y++KP+S     E ++K+
Sbjct: 848 EATRQIRNPKSPIPNRNIPIIAMTAHAMQGDREKFLAAGMNDYVAKPVSPQDLAEALEKW 907

Query: 120 IGE 122
           + E
Sbjct: 908 LPE 910


>gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
 gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED     ++    +    Y  ++  +   A+    +  P +I++D  L   S
Sbjct: 1   MAGKILIVEDERAIREMVALYLLKQNYEVIEAEDYQSAVNRLEEQ-PQLILLDWMLPGRS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + +K+  +  +IP+I +TA + + D       G + YI+KP S  I +  I+   
Sbjct: 60  GIMFIEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALW 119

Query: 121 GEA 123
             +
Sbjct: 120 RRS 122


>gi|294788094|ref|ZP_06753338.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
 gi|294484387|gb|EFG32070.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
          Length = 232

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED      L R  +E +G+    + +  E+  L  +  PD+I++D  L + S
Sbjct: 1   MSIHILIVEDEAAIATLIRFNLEQAGFQVSVSGSVEESKILINKQLPDLILLDWMLPQTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++   Q++ DS  +E+P+I +TA +   D+E     G + YI+KP S    +  +   +
Sbjct: 61  GVQFVGQLRADSRTRELPIILLTARSEDVDKETGLNQGADDYITKPFSPRELVARVNALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 246

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++++ED+    K+  + +   GY  +   +G + L       P ++++D+ L ++ 
Sbjct: 12  MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVD 71

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +Q+++ SE   +P+I V+A     D+      G + YI+KP S    +  +K ++
Sbjct: 72  GFEVCRQVRQQSE---VPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|209514967|ref|ZP_03263836.1| PAS modulated sigma54 specific transcriptional regulator, Fis
           family [Burkholderia sp. H160]
 gi|209504593|gb|EEA04580.1| PAS modulated sigma54 specific transcriptional regulator, Fis
           family [Burkholderia sp. H160]
          Length = 595

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED   N+ +  DL+  +G+      +G  ALE     +P +I++D+ +  + G   
Sbjct: 20  ILVVEDVPANLSVLLDLLSGAGFTVSVAEDGESALEQVAYAQPALILLDVMMPGLDGFAT 79

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +   +EIPVI +T      D+ +  + G   YI+KP      +  +  ++
Sbjct: 80  CRRLKANLATREIPVIFMTGLTDTIDKVKGLELGAVDYITKPFQHEEVLARVNTHL 135


>gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++++D +    L    +   GY   +  +  +ALE  + ++ D+ ++D+ + EIS
Sbjct: 1   MQTKILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNNRVDLALLDVMMPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI K I+E       PVI +TA     D+ +    G + YI+KP +    +  +K  +
Sbjct: 61  GFEICKIIREKYMF---PVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|298244929|ref|ZP_06968735.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552410|gb|EFH86275.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISG 61
           K++++V+D E   ++ R  +   GY      +G EALE+ + H+PD+I++D+ +   + G
Sbjct: 6   KRILVVDDEEPIQRVLRKNLLAGGYDVFVAGDGREALEMVKLHQPDLILLDLCMPGELDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++  +++   +    P+I ++A + +  + R    G + Y++KP      M  ++  + 
Sbjct: 66  LDVCVEVRHRGQKP--PIIVLSAMSEERQKVRALDLGADDYLTKPFGSEELMARVRACLR 123

Query: 122 EA 123
            +
Sbjct: 124 RS 125


>gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
 gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
          Length = 223

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED+     L  D I+ +G+  +   +G+EAL    +   D++++DI L +I G
Sbjct: 1   MSKILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKYSEQTFDLVLLDIMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++ S    +P+I +TA   + ++ +      + YI+KP S+ + +  I   + 
Sbjct: 61  YGVCEVIRQKS---NVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|148976462|ref|ZP_01813168.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3]
 gi|145964285|gb|EDK29541.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3]
          Length = 242

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           ++++V+D++   +L  + +  SG+      +G+E     + Q  PD+I++D+ L    G 
Sbjct: 6   RILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ +S    +P+I +TA + + D+    + G + YI+KP S    M  IK  +  
Sbjct: 66  TLCQRVRRNS---NVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122


>gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++++D      L   +++  G+      NG   +      +PD++++D+ L + SG
Sbjct: 1   MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+I    +   IPVI V+A     D+    + G E YI+KP      +  IK  + 
Sbjct: 61  YDLCKEI---VKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 228

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+E   ++ +  +ET+GY     ++G  A E      P+++++D+ L  I G+E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++DS    +PVI +TA     D+    + G + Y+ KP      +  +K  +  
Sbjct: 67  VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122


>gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  A+ LAR+  PDVI++DI L +I GLE
Sbjct: 24  RVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGDIDGLE 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++  E   +PV+ +TA     D       G + Y++KP SL   +  ++  +  A
Sbjct: 84  VLRRIRQQQEG--VPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRA 141


>gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    + +D +E +GY      +G   L  A     D+ I+DI L    G
Sbjct: 10  MSKILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHEDIDMCILDIMLPGTDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQ++E   +++IP+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 70  FEICKQVRE---VKDIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHLA 126

Query: 122 E 122
            
Sbjct: 127 R 127


>gi|262173309|ref|ZP_06040986.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
           MB-451]
 gi|261890667|gb|EEY36654.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
           MB-451]
          Length = 376

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+DN  N  L   L++   Y  L   +G +AL +  + KPD++++DI + E+ G E
Sbjct: 6   TILIVDDNPENRALLAGLLKPH-YRLLVATSGAQALTICHKQKPDLVLLDIMMPEMDGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +++  D ELQ+IPVI +TA +   DE+R    G   YI KPIS  I +   + ++ 
Sbjct: 65  VCQRMGADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLR 122


>gi|255035394|ref|YP_003086015.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948150|gb|ACT92850.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1366

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+I EDN         L+E   Y  L+  +G EAL  AR+  P++II D+ +  + G+E
Sbjct: 1114 TVLIAEDNAELRDYMASLLENQ-YTVLKAADGQEALSWARKVLPNLIISDLMMPRMDGME 1172

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +T  IK D     IPVI +TA + +       K G + Y++KP S+      +   I
Sbjct: 1173 LTVSIKSDERTSHIPVILLTAKSGQESRIDGLKTGADDYLTKPFSVEELTVRVANLI 1229


>gi|254412519|ref|ZP_05026293.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180829|gb|EDX75819.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 381

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 66/118 (55%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D   N+ L + ++ET GY      +G  AL +  +  PD+I++D+ + ++ G E
Sbjct: 10  RILAVDDAPDNLFLMQTILETEGYDLSLVEDGYSALAIVEKSPPDLILLDVMMPQMDGYE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+++S L  IP++ +TA+  +         G + +I KP+ +   +  ++  + 
Sbjct: 70  VTRRIRQNSSLPFIPILLITAY-EQSSAIEGLDAGADDFIRKPVDVGELLARVRSLLR 126


>gi|148558108|ref|YP_001257598.1| polar differentiation response regulator [Brucella ovis ATCC 25840]
 gi|148369393|gb|ABQ62265.1| polar differentiation response regulator [Brucella ovis ATCC 25840]
          Length = 134

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 92/123 (74%), Positives = 110/123 (89%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K VMIVEDNELNMKLFRDLIE SGY  ++TR+G+EAL+LAR+H PD+I+MDIQL E+S
Sbjct: 12  MTKSVMIVEDNELNMKLFRDLIEASGYETIRTRSGLEALDLAREHHPDLILMDIQLPEVS 71

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK Y+
Sbjct: 72  GLEVTKWLKDDEELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 131

Query: 121 GEA 123
           G+A
Sbjct: 132 GDA 134


>gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 713

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED     +L RD +E + ++     NG E L+ A     D+II+DI L  ++G E
Sbjct: 488 KILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIMLPGMNGFE 547

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I KQI+    +  IP++ V+A     D+ R    G + YI+KP S S  +  +K ++  
Sbjct: 548 ICKQIRA---VNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSR 603


>gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
 gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 61/119 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    +++ +  ++  GY      +G++A+++A +  PDVI++DI +    G+E
Sbjct: 8   KVLVVDDEPDIVEILKYNLQKEGYEVSTAEDGVKAVKVASKFHPDVILLDIMMPGQDGVE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              QI++  EL+   +I +TA   +  E      G + YI+KPI     M  I      
Sbjct: 68  TCLQIRQIPELKNAFIIFLTARMEEYSEVAAFDVGADDYITKPIKPRALMSRIAALFRR 126


>gi|74317286|ref|YP_315026.1| Hpt sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC
           25259]
 gi|74056781|gb|AAZ97221.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 781

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N ++ + ++   G       +G EA++L      D ++MD Q+  + G E
Sbjct: 522 RVLLVEDNPVNQQVAQAMLAKLGLATTVASDGREAVDLVASRAFDAVLMDCQMPVMDGYE 581

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ I+       +PVIA+TA A+ GD ++    G + ++ KP SL+    T+ +++ 
Sbjct: 582 ATRAIRRLP-GARLPVIALTANALHGDRQKCLDSGMDDFLPKPYSLAQLQATLARWLR 638


>gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 230

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++I++D+     +  D ++  GY  +   +G E L +AR+ +PD++++DI + ++ 
Sbjct: 1   MRQTILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    +  + + +    PVI +TA   + D+    + G + Y++KP SL   +  I+  +
Sbjct: 61  GFGFLQAYRREHQA---PVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|329962433|ref|ZP_08300433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328529989|gb|EGF56877.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1481

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN+      + +     +  ++  NG   LE ++  +PD+I+ D+ +  + G+E+
Sbjct: 1210 ILIVEDNQELRFFLKTIFIQH-FNVIEAENGKSGLEKSKNCQPDIIVSDVMMPGMDGIEM 1268

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + ++ED     IP++ +TA +    +    K G + YI+KP S +     I   + +
Sbjct: 1269 VRALREDITTSHIPIVLLTAKSNTESKIEGMKQGADDYITKPFSAAYLKARIFNLLEQ 1326


>gi|312889015|ref|ZP_07748575.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311298533|gb|EFQ75642.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1377

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++++DN+   +  R +     Y   +  NG E  EL ++H PD++I D+ +  +SG+
Sbjct: 1111 KTLLVIDDNQDIREYIRQVF-KLDYNIYEANNGEEGYELIKEHLPDIVISDVMMPGMSGI 1169

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   +KED  +  IPVI +TA +    + +  +GG + YISKP    I    +   +
Sbjct: 1170 ELCSLVKEDMAISHIPVILLTASSSPEIKLKGIEGGADDYISKPFDKEILKARVTGLL 1227


>gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 262

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     ++    ++ SGY  +   +G +ALE+     PD++++D+ L ++ G  +
Sbjct: 22  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVMLPKLDGFAV 81

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 82  CRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 136


>gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185]
          Length = 221

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   +++VED++   +L +  + T  Y  +   +G+E +    +   D+I++D+ +  +
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G E++K I+  S    +P+I +TA   + D+ +    G + YI+KP S  + +  ++  
Sbjct: 61  NGFEVSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 228

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL+     K D++I+DI +  + G +
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 67  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|220907975|ref|YP_002483286.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
 gi|219864586|gb|ACL44925.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
          Length = 381

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+  N+ L + ++E+ GY      +G  ALE      PD++++D+ +  ++G E
Sbjct: 14  HILVVDDSADNLFLIQTILESEGYEVSTATHGKAALEQVVNAPPDLVLLDVMMPGMNGYE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+ +  L  +P++ +TA             G + +I KP+     +  ++  + 
Sbjct: 74  VTRRIRLNKSLPFMPILLITAHDRPR-VAEGLDLGADDFIRKPVEYDELLARVRSLLR 130


>gi|298487166|ref|ZP_07005215.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298158190|gb|EFH99261.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1172

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1107

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1108 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167

Query: 122  E 122
            +
Sbjct: 1168 K 1168



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 782 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 841

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 842 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 961

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 962 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 992


>gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 788

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 77/123 (62%), Gaps = 3/123 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED+ +++   + ++E SGY     ++G+EAL+   +   D+I+MD+QL  + G++
Sbjct: 662 RILIAEDDPVSLLSGKRMLEKSGYSVTAAKDGLEALQFLTEQDFDLILMDVQLPTMDGVD 721

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+E     +   IP+IA+TA+AM GD+E+  + G   YISKP+ +    E I++ +
Sbjct: 722 ATRAIREGRAGEDKASIPIIAMTAYAMTGDKEKFLEAGMNDYISKPVEMETLKEVIERVM 781

Query: 121 GEA 123
            +A
Sbjct: 782 EKA 784


>gi|254446460|ref|ZP_05059936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260768|gb|EDY85076.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 998

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 72/121 (59%), Gaps = 2/121 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           +V++VED+ +N K+   ++ + G   +   +G+EALE      K D ++MD Q+  + GL
Sbjct: 876 RVLLVEDHPVNRKVATHMLSSLGVSVVVACDGLEALERVEGADKLDAVLMDWQMPVMDGL 935

Query: 63  EITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +++I+E  + + ++P++A+TA AM+GD E+    G + Y+SKP+      E + + + 
Sbjct: 936 DASRKIREMKDWRAKVPIVAMTANAMRGDREKCIAAGMDDYLSKPVVPEKLKEVLSRILR 995

Query: 122 E 122
            
Sbjct: 996 R 996


>gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 225

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++IV+D+    +L    +E  G+   +  +G++AL+   Q K D++I+DI +  + 
Sbjct: 1   MIPNILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 231

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KV++V+D     +  +  ++    +      N  EA +L  Q  P+++I DI + ++ G
Sbjct: 5   AKVLLVDDEPGVRESVQAYLQYGDDFEVRTASNANEAWDLLNQEIPELVISDIMMPQVDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  K+++ED+  Q IPV+ +TA  M  D  +    GC+AY+SKP         IK  I 
Sbjct: 65  YQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALIKSLIE 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|117923740|ref|YP_864357.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607496|gb|ABK42951.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 893

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+E N  L R  ++ S YI     NG+EA+E  +Q+  D+++MDIQ+  + GL  
Sbjct: 767 VLVVEDSEDNRLLIRTYLKKSPYILDFASNGLEAIEKWQQNHYDLVLMDIQMPLMDGLTA 826

Query: 65  TKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+ I++          P++A+TA AM  D +     GC+ +++KPI      + +  ++
Sbjct: 827 TRHIRKQERREQRPHTPIVALTAHAMASDHQNAMAAGCDDFLTKPIKRDTLFKALHHHL 885


>gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 241

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   +L +  +E   Y+  +  +G EALE A  +  DVI++D+ L    G+E
Sbjct: 9   RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + K+I+     +  P++ +TA   + +  +  + G + YI KP S    +  +K
Sbjct: 69  VCKEIRAQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119


>gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +   +L    + + GY   +  N  EAL + +Q +  ++++D+ +  ++GLE+
Sbjct: 6   VLVVDDEKEIAELVEIYLVSDGYKVFKAYNADEALLIMKQEEIHLVLLDVMMPGMNGLEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E S    IP+I ++A +   D+     GG + Y++KP +       +K  +  
Sbjct: 66  CRKIRESS---NIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120


>gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +   + +   G+ A+  R+G++A+E  R+  PD++++D+ L  + GLE
Sbjct: 5   RILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSAPDLVVLDLMLPGLDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +   + +PV+ +TA   + D+      G + Y++KP S+ + +  ++  +  
Sbjct: 65  VCRRLQAE---RPVPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRR 120


>gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++ED     +L RD +E + +      +G   L+ A Q   ++II+DI L +++G
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYNLIILDIMLPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+    +++IP++ V+A     D+ R    G + YI+KP S S  +  +K +I 
Sbjct: 61  FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I+ED+ + ++  +D  E  GY      +G   L+LA   +P +I++D+ L +++G E
Sbjct: 6   TILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++E+    E+P+I +TA   + D     K G + Y++KP S+   +  ++ ++  
Sbjct: 66  ICRFLREEKL--EMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR 122


>gi|307153265|ref|YP_003888649.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
 gi|306983493|gb|ADN15374.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
          Length = 123

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++V++VED+++  ++  +L+   G       +G+EALE      PD++++DI +  ++G
Sbjct: 1   MREVLLVEDSQVQREMISNLLRDYGLNVSIACDGVEALEFIETFNPDLVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + + +PV+  ++   + D     K G +AYI+KP      + TIK+ + 
Sbjct: 61  YEVCRRLKSDPKTKHLPVVLCSSKGEEFDRYWGMKQGADAYIAKPFQPVELLGTIKQLLR 120


>gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
 gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +E   +  L+  +G EA+++   +    ++I+D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+++S+   +P+I +TA   + DE      G + YISKP S  I +  ++  +  
Sbjct: 65  EVCREIRKNSK---VPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 121


>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1768

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/120 (35%), Positives = 76/120 (63%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N ++  + +E  G I     NG  ALE       D+++MD Q+  + G 
Sbjct: 1424 KRILLVEDNEMNQEVASEFLEQVGVILSIAENGQVALEKLAMQSFDLVLMDCQMPVMDGY 1483

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T ++++  EL ++PVIA+TA AM GD+E   + G   +I+KPI +S+  +T+ +Y+G+
Sbjct: 1484 QATAELRKRPELADLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVSLLYKTLLEYLGD 1543



 Score =  113 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ +DN     + R  +E+ G+     R+G EAL   ++    V ++D ++ E+ GLE
Sbjct: 1283 RILVADDNATARDILRSTLESMGFTVDTVRSGAEALSRCQETDYGVALIDWRMPEMDGLE 1342

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +++           + V+A A     ++  +     YI+KPIS S  ++ I   +G+
Sbjct: 1343 TARRL-LSERTNPPKTLIVSAHADGDFIDKAEQAEISGYITKPISASRLLDGIMSALGK 1400


>gi|331008579|gb|EGH88635.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            tabaci ATCC 11528]
          Length = 1170

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 227

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++VED E   K  +  +E  GY   +  +G E +E+AR+  PD++++DI L  I 
Sbjct: 1   MKTKVLLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRELPDIVVLDIMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++   E   + +I +TA A   D+    + G + Y++KP + +     IK   
Sbjct: 61  GFEVCKTLR--GEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIE 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|224536093|ref|ZP_03676632.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522312|gb|EEF91417.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1346

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VED+E   +     +  + Y   +   G  A+ +AR+  PD+II DI +  + GLE
Sbjct: 1097 RILVVEDDEDMRQYIVSKLSKT-YNVQEAPEGKSAIHIAREQMPDLIISDIMMPVMDGLE 1155

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + IK D  L  IPV+ +TA +++   +   +   + YI KP +  I +  I+  I
Sbjct: 1156 LCRAIKNDMALAHIPVVLLTAKSLEEHVKDGYQALADDYILKPFNAQILLAKIESLI 1212


>gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
 gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++VED+    +L     +   +    T +G EAL +A++  PD++++D  ++ +SG+
Sbjct: 4   AKMLLVEDDAALAELLIWHFKREDFDVSHTVDGEEALLMAQETVPDIVLLDWMVESLSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++  +    +P+I +TA   + D  R  + G + Y++KP S    +  +   +  
Sbjct: 64  EVCRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123


>gi|332524176|ref|ZP_08400403.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107512|gb|EGJ08736.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 650

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ EDN +N ++  DL+E  G       NG +ALE+A +    +I+MD+Q+  + GL
Sbjct: 527 RRILLAEDNPINQEVVVDLLEAVGLRVDTADNGRQALEMALRSPYALILMDVQMPGLDGL 586

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T+QI+E      +P++A+TA A   D       G   ++SKP+      + +++++ E
Sbjct: 587 AATRQIREH-LGSAVPIVAMTANAFAEDRAACLDAGMNDHLSKPVEPQRLFDALRRWLDE 645

Query: 123 A 123
           A
Sbjct: 646 A 646


>gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D E    L    +++ G   +   NG EALE   ++  D++++DI +  + 
Sbjct: 1   MNKTILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHVDLVVLDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    K++++   +  +P+I +TA A   ++    + G ++Y++KP+S  + +  IK  +
Sbjct: 61  GWTACKELRK---ISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|288929443|ref|ZP_06423288.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288329545|gb|EFC68131.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 963

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++++DN          +    Y  +   NG + L  A Q  PDVI+ D+ +  + GLE
Sbjct: 712 RVLVIDDNVDVAAFIGSQLSDK-YAIIYAHNGRDGLNKAEQMVPDVIVTDLMMPGVDGLE 770

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ +     IP+I VTA   + D  +  + G +AY++KP +       ++K + +
Sbjct: 771 VCRRIRANEVTSHIPIIVVTAKITEADRVKGLEAGADAYLAKPFNRDELRMRVEKLLEQ 829


>gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+      +G EAL        D++++D+ L  +SG
Sbjct: 1   MTHVLIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|261409329|ref|YP_003245570.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261285792|gb|ACX67763.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 1219

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK+++V+D+  N+     ++E          NG EA+EL +Q+   D+++MD+ + E+ G
Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQQNPDFDLVLMDMMMPEMDG 1158

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++++E  E  ++P+IA+TA AMK D  +  + G   Y+ KPI     +  ++ ++
Sbjct: 1159 YEAMRRLREMPEFDKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K ++IVED+++      +LI            G EAL   R+ + D +++D+ L +++G
Sbjct: 952  MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRYDCMVLDLMLTDMTG 1011

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
             E+  QI++D  L ++P+I  T   +   EE   +   E+ I K + S    ++
Sbjct: 1012 FELLDQIRDDENLVDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065



 Score = 92.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+    ++  D+    G+ AL    G   LE+A+ ++PD II+DIQL  I G  + 
Sbjct: 834 LIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMAKSYRPDAIILDIQLPVIDGWSVM 893

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            ++K  +  + IPV  ++   +  + ++    G  AY+ KP S     + 
Sbjct: 894 GELKSSAVTRHIPVHVIS---VVDEVKQGLMMGAIAYLKKPSSREALEDA 940


>gi|108763454|ref|YP_632339.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108467334|gb|ABF92519.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+    ++ R  +E  G+   +  +G  AL    +  P +I++DI + E+ GL 
Sbjct: 6   TVLVVDDDPHLREIVRFALEQGGFRVDEAADGRAALTQVDRGLPALIVLDIMMPELDGLA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   EL   P++ +++   + D     + G + Y++KP S    +  +K  +  A
Sbjct: 66  VCREVRRKHEL---PIVFLSSRDDEVDRILGLELGGDDYLTKPFSPRELVARVKAVLRRA 122


>gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+    +     +E   Y   +T +G EAL L +++  D+ I+D+ L ++SG+E
Sbjct: 2   KLLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGLPKLSGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q ++D   +E P+I +TA     D+    + G + Y+ KP  +      +   +  A
Sbjct: 62  VIRQWRDDG--KEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRA 119


>gi|289646781|ref|ZP_06478124.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            aesculi str. 2250]
          Length = 1172

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1107

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1108 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167

Query: 122  E 122
            +
Sbjct: 1168 K 1168



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 782 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 841

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 842 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 961

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 962 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 992


>gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+DN    ++   L+ + GY  ++ ++G EA+++      D+ I+DI +  I+G +
Sbjct: 5   KILIVDDNPEIREVLNVLLSSEGYDVIEAKDGQEAIDMV-SDDIDLYILDIMMPIINGYQ 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I++ S     P++ +TA   + D+      G + Y+SKP S +     +K  +  
Sbjct: 64  ACVEIRKKS---NAPILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLRR 119


>gi|126661523|ref|ZP_01732571.1| regulatory components of sensory transduction system [Cyanothece
           sp. CCY0110]
 gi|126617189|gb|EAZ88010.1| regulatory components of sensory transduction system [Cyanothece
           sp. CCY0110]
          Length = 458

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D   N+K+   ++E   Y   +  +G  A+E  +   PD+I++DI++  I G E
Sbjct: 5   TILIVDDQLPNLKVLSTMLEGKNYKVRKAVDGESAIEAVQIEPPDLILLDIKMPNIDGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K D + +++P+I ++A +   D+ +  + G   YI+KP      +  I   +
Sbjct: 65  VCQRLKSDDKTKDVPIIFISALSEVFDKVKAFEVGGIDYITKPFQEEEILARINSQL 121


>gi|94263689|ref|ZP_01287497.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455888|gb|EAT06047.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 500

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 70/120 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ ED+ LN ++ ++L+   G       NG EA+E+ARQ     ++MDIQ+ E+ G 
Sbjct: 146 ARVLVAEDHPLNREIAQELLTAVGIEVDMANNGREAVEMARQGAYQGVLMDIQMPELDGY 205

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T  I+     +E+P+IA+TA A++ + ++  + G   ++SKP+   +  +T+ +++  
Sbjct: 206 RATAAIRALPGGEELPIIAMTAHALEEERKKSLEAGMNDHVSKPVDAEVLYQTLARWLKR 265


>gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 237

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E    A+Q  PDV+I D+ +  + G  
Sbjct: 12  RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFSKAQQMLPDVVITDVMMPRLDGYG 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +  +++ D  L   PVI +TA  M  D  +    G + YI KP      +  ++  
Sbjct: 72  LLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 127


>gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. CB0205]
          Length = 253

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ +D E   ++    +   G+      NG +ALE  R  +PDV+++D+ + E+ G  
Sbjct: 11  KILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVMMPELDGFA 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +T++I+  SE   +P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 71  VTERIRAQSE---VPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRR 126


>gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I++D E+ +K  R  +   GY      +G E LE  +    D++I+D+ L +I G
Sbjct: 1   MENILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKIKSGNFDLVILDLMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + K+++       IP+I +TA     D+    + G + Y++KP +    +  I+    
Sbjct: 61  LTLCKEVRS---FSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|256420288|ref|YP_003120941.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035196|gb|ACU58740.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 234

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED++    + +  +E +GY  + + +G  A E  +    D+ ++D+ + +  
Sbjct: 1   MKARILLVEDDQNVGAVTKKRLEEAGYDVVHSTDGQMAWEQFQSRTFDICLLDVVMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +QI+  ++   IP++ +T+ A+  D+ +  K G + YI+KP S+   +  I+ ++
Sbjct: 61  GFTLAEQIRRKNDF--IPILFLTSKALDEDKIKGFKTGADDYITKPFSMQELLLRIEVFL 118

Query: 121 GEA 123
             +
Sbjct: 119 KRS 121


>gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL   R+ KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +P++ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
 gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
          Length = 231

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D    ++L    +   GY   +  NG++AL +  + K  ++I+DI +  I GL++
Sbjct: 4   VLIVDDEAEIIELMEIYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+++     IP+I V+A   + D+ +    G + YI KP S+   +  +K  I  
Sbjct: 64  CMKIRKE---YNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRR 118


>gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++ED+   ++  +  +   GY      +G   L+LAR  +PD++++D+ L  + 
Sbjct: 1   MAERILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMG 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+++    E+P++ ++A   + D+    + G + Y+ KP  L   +  I   +
Sbjct: 61  GLEVIREIRKED--PELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|66044349|ref|YP_234190.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255056|gb|AAY36152.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 705

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G  AL + ++  PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K +     IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|329928581|ref|ZP_08282448.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937697|gb|EGG34106.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 1219

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK+++V+D+  N+     ++E          NG EA+EL +Q+   D+++MD+ + E+ G
Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQQNPDFDLVLMDMMMPEMDG 1158

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++++E  E  ++P+IA+TA AMK D  +  + G   Y+ KPI     +  ++ ++
Sbjct: 1159 YEAMRRLREMPEFDKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K ++IVED+++      +LI            G EAL   R+ + D +++D+ L +++G
Sbjct: 952  MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRYDCMVLDLMLTDMTG 1011

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
             E+  QI++D  L ++P+I  T   +   EE   +   E+ I K + S    ++
Sbjct: 1012 FELLDQIRDDENLVDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065



 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+    ++  D+    G+ AL    G   LE+A+ ++PD II+DIQL  I G  + 
Sbjct: 834 LIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMAKSYRPDAIILDIQLPVIDGWSVM 893

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            ++K  +  + IPV  ++   +  + ++    G  AY+ KP S     + 
Sbjct: 894 GELKSSAVTRHIPVHVIS---VVDEVKQGLMMGAIAYLKKPSSREALEDA 940


>gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 249

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D     ++    +  +GY   +   G +AL +AR   PDVI++D+ L  + G+
Sbjct: 13  RRVLVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGLPGLDGV 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +QI+      +  V+ +TA   + D       G + YI+KP S    +  ++  +  
Sbjct: 73  EVCRQIR---TFSDCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRR 129


>gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 233

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++I+ED +   +  +  +E   Y     ++G E +E  + +  D+I++D+ + ++SG 
Sbjct: 7   KNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSGE 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ K I++      IP+I +TA     ++  +   G + Y++KP  +      I+  + 
Sbjct: 67  EVCKIIRK---TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALR 122


>gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
 gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
          Length = 1346

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++V++ ED+ +N  +   L+E  G+      +G EAL   R    D I+MD+Q+ E+ G
Sbjct: 1207 SRRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAYDAILMDVQMPELDG 1266

Query: 62   LEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            LE T++++ +   +E P V+A+TA   + D  R  + G +A++SKPI      E +
Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322



 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 25/127 (19%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD-VIIMDIQLQEISGLE 63
            V+IV  N+ N  L R   ET G  A    +G EAL+     +   V ++D  L ++SG  
Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133

Query: 64   ITKQIKEDSELQEIPVIA----------VTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            +  Q++E +   E+PV+           +TA   +              + KPI  S   
Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR--------------LHKPIKQSNLH 1179

Query: 114  ETIKKYI 120
            +T+   +
Sbjct: 1180 DTLTALL 1186


>gi|226358131|ref|YP_002787870.1| histidine kinase, hybrid [Deinococcus deserti VCD115]
 gi|226319774|gb|ACO47768.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115]
          Length = 1644

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
            K+V++V+D+  N+     ++E      L   NG +A+++  QH   D+++MD+ + E+ G
Sbjct: 1524 KRVLVVDDDIRNIFALTAVLERHQMEVLTAENGRDAIQMLEQHPELDIVLMDVMMPELDG 1583

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+ I+++ + + +P+I++TA AM GD E+  + G   YISKP++    +  ++ ++ 
Sbjct: 1584 YETTRLIRQNRKWKNLPIISLTAKAMPGDREQSIESGASDYISKPVNTGQLLSLLRVWLS 1643

Query: 122  E 122
             
Sbjct: 1644 R 1644



 Score = 91.3 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++VED+    +   DLI           +G EALEL  +   D I++D+ L ++SG 
Sbjct: 1378 KNLLVVEDDGPQRQNIVDLIGNGDVKTTAVSSGAEALELLARVPFDCIVLDLNLPDMSGF 1437

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME------- 114
            E+   +++   L+ IP+I  TA  +   +E   +   ++ I K + S    ++       
Sbjct: 1438 ELMTTLQQTPSLRAIPIIVYTAQDLTRQQETQLRKAAKSIILKDVRSPERLLDEVTLFLH 1497

Query: 115  TIKKYIGEA 123
             ++  + EA
Sbjct: 1498 RVEANLPEA 1506



 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVED+     +  DL    G++ L    G +AL LA+ ++P  I +D+ L + SG  +
Sbjct: 1258 VLIVEDDPTYAGILLDLARERGFMGLIATRGDQALTLAQTYRPAAITLDLTLPDTSGWAV 1317

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKYIG 121
               +K D   + IPV  ++    +      RK G   +I+K             ++ ++ 
Sbjct: 1318 LDSLKHDPLTRHIPVHIIS--GQEKSLV-GRKLGALDHITKSGDREQLTAAFASLENFLA 1374

Query: 122  E 122
             
Sbjct: 1375 R 1375


>gi|134296588|ref|YP_001120323.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139745|gb|ABO55488.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|325521611|gb|EGD00393.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 241

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|190015554|ref|YP_001967362.1| DNA-binding response regulator [Bacillus cereus]
 gi|217956894|ref|YP_002335990.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|116584461|gb|ABK00578.1| DNA-binding response regulator [Bacillus cereus]
 gi|217068621|gb|ACJ82869.1| DNA-binding response regulator [Bacillus cereus AH187]
          Length = 226

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59
           +KKV+IVED ++  +         GY  +   +G   L+L   ++H   ++I+DI L  +
Sbjct: 1   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+++S    +P+I +TA + + D     + G + Y++KP   SI +   K+ 
Sbjct: 61  DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117


>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
          Length = 239

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      NG  AL+ AR+ +PD +I+D+ +  + G 
Sbjct: 13  ARVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPGMDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 73  GLLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130

Query: 123 A 123
           +
Sbjct: 131 S 131


>gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
 gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
          Length = 1346

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++V++ ED+ +N  +   L+E  G+      +G EAL   R    D I+MD+Q+ E+ G
Sbjct: 1207 SRRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAYDAILMDVQMPELDG 1266

Query: 62   LEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            LE T++++ +   +E P V+A+TA   + D  R  + G +A++SKPI      E +
Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322



 Score = 65.5 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 25/127 (19%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD-VIIMDIQLQEISGLE 63
            V+IV  N+ N  L R   ET G  A    +G EAL+     +   V ++D  L ++SG  
Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133

Query: 64   ITKQIKEDSELQEIPVIA----------VTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            +  Q++E +   E+PV+           +TA   +              + KPI  S   
Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR--------------LHKPIKQSSLH 1179

Query: 114  ETIKKYI 120
            +T+   +
Sbjct: 1180 DTLTALL 1186


>gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 60/119 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED    ++L    +  +G+  +      EA E  ++  P +I++D  L + SGL 
Sbjct: 7   TILIVEDEPSIVELVSYTLREAGWNTMAVNTTAEAWEFIQRRTPHLILLDWMLPDQSGLR 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +I+ D +LQ IPVI +TA  M+ D+      G + Y++KP S       IK  +  
Sbjct: 67  LLSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLRR 125


>gi|326794044|ref|YP_004311864.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326544808|gb|ADZ90028.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 912

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 72/119 (60%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VEDN LN ++   L+         ++NG EA+E  + +  D+++MD+Q+  + G 
Sbjct: 617 KRILVVEDNALNAQILGQLLIMQSADVAFSQNGEEAIEELKSNPYDLVMMDVQMPILDGY 676

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             T+QI+ +   + +P+IA+TA AMKGD E+  + G   Y+SKP+       T+ K++G
Sbjct: 677 SATRQIRLNPSFKTLPIIAMTANAMKGDREKALESGMNDYLSKPVEPDTLYTTLIKWLG 735


>gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 230

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D++  +KL    +   G+  +   +G EAL   +++  D II+DI +  ++
Sbjct: 1   MQKKILVVDDDKDIVKLITKSLSYEGFETIPAYSGKEALCALKENHIDFIILDIMMPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + I+        P++ ++A     D+    + G + Y++KP S+      I+   
Sbjct: 61  GLDVCRSIRNS---YNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANF 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|303327943|ref|ZP_07358382.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302861769|gb|EFL84704.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 825

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VEDNE+N ++   ++  +G       NG +A+     ++ D+I+MD+Q+  + GL
Sbjct: 705 RRVLVVEDNEINQEVATAILAEAGLEVGIAANGADAVRETAANRYDLILMDVQMPLMDGL 764

Query: 63  EITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I+    +  ++P+IA+TA AM+GD E+    G   +++KPI        +++++
Sbjct: 765 EATRRIRALPGVPADLPIIAMTAHAMRGDWEKSLAAGMNDHLTKPIDPRRLFAVLERWL 823


>gi|300022157|ref|YP_003754768.1| response regulator receiver modulated diguanylate cyclase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523978|gb|ADJ22447.1| response regulator receiver modulated diguanylate cyclase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 456

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    ++   +  L   +G +AL+L  +   DV+++D+ +  + 
Sbjct: 1   MTARVLVVDDILANVKLLEARLQAEYFEVLTANSGRQALDLLERESVDVVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  + IK       IPV+ VTA     D+ +  + G + +++KP+     +  +K   
Sbjct: 61  GFETCRHIKASHATHHIPVVMVTALDQPSDKVQGLESGADDFLTKPVDDIALVTRVKNLA 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+DNE +     + +   G  A   R+   AL    +   D++++ + L    GL 
Sbjct: 157 RVLLVDDNERSAARLLEFLSK-GNDAFAERDMHAALTKLTESNFDLLVVSLSLDAADGLR 215

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +P+I +     +    R    G   Y+ +PI     +  +K  I  
Sbjct: 216 LCSQVRSLERTRHLPIIMLVEPGDEARLLRGLDMGVNDYLMRPIDRHELLARVKTQIKR 274


>gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 224

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K   
Sbjct: 59  GYELLRLFREKE--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|256829709|ref|YP_003158437.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578885|gb|ACU90021.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 227

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVEDN   +    D ++  GY     ++G+  L LA  H  D+I++D+ L  I G +
Sbjct: 2   RILIVEDNSDILANVLDYLQLKGYTVDCAQDGLGGLHLAVTHAYDLIVLDVMLPGIDGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I K+++ED++L +IPVI +TA     D  +    G + Y+ KP +LS     I+  +  A
Sbjct: 62  ICKRLREDAKL-DIPVIMLTARDTLDDRIQGFNTGTDDYLVKPFALSELHARIQAVLRRA 120


>gi|217969666|ref|YP_002354900.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217506993|gb|ACK54004.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 256

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L  D +E  G       +G E       H+ D+I++D+ +    GL 
Sbjct: 6   HILIVDDDRDIRQLLADYLEKQGLRCTTAADGREMKAALETHRIDLIVLDLMMPGEDGLT 65

Query: 64  ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++         P++ +TA     D     + G + Y++KP         I+  +  
Sbjct: 66  LCRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIRAVLRR 125


>gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1407

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VEDN +N  +  +L+   G       +G EALE  +     +I+MD+Q+  + GL+
Sbjct: 1037 RVLLVEDNPINRLVALELLHAVGLTVETAEDGAEALERVKAADYALILMDMQMPVMDGLD 1096

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ I+     ++ P++A+TA A   D     + G   +I+KP+       T+ K++
Sbjct: 1097 ATRAIRALPGWRDKPILAMTANAFDDDRRTCVEAGMNDFIAKPVEPERLYATLHKWL 1153


>gi|302187737|ref|ZP_07264410.1| response regulator receiver [Pseudomonas syringae pv. syringae 642]
          Length = 1172

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1107

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1108 FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167

Query: 122  E 122
            +
Sbjct: 1168 K 1168



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 782 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 841

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 842 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893



 Score = 78.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R H  D +I+D++L ++ G 
Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 961

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 962 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 992


>gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 239

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D    + + R  +   G+  +  R+G EA       +PD++++DI L +  GLE
Sbjct: 7   RLLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIMLPDGDGLE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++ +E     E+PV+ +TA     D+      G + Y++KP S+   +  I+  +  
Sbjct: 67  LCRRWREQGV--EVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRR 123


>gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 242

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+I +D    ++     +   G+  +   +G EAL L+R H PD+I++D+ L  +SGL+
Sbjct: 12  TVLIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPRLSGLD 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+++S    +P+I VTA + + D     + G + Y++KP  +S  +  I+  +  
Sbjct: 72  VCRTIRQES---SVPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRR 127


>gi|227113247|ref|ZP_03826903.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 232

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G+  +   +G +AL++   +  D++++D+ + + +G
Sbjct: 1   MNKILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQVL-DNTIDLLLLDVMMPKKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K++++     + PVI +TA   + D     + G + Y+ KP +    +  I+  + 
Sbjct: 60  IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++IV+D+    +L    +E  G+      +G++AL+   + K D++I+DI +  + 
Sbjct: 1   MIPNILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|212691087|ref|ZP_03299215.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855]
 gi|212666319|gb|EEB26891.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855]
          Length = 1308

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN+   +     +    Y   +  NG EALE+  Q    ++I D+ +  + GLE+
Sbjct: 1067 VLVVEDNDDFRRFLVGCL-KEHYQVFEASNGKEALEILSQQSVQMVISDVMMPVMDGLEL 1125

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               +K D     IPVI +TA   +       + G + YI+KP +L I +  I+K +
Sbjct: 1126 CHAVKTDIRFSHIPVILLTARTAEEHVLGGLREGADDYITKPFNLDILLLRIQKLL 1181


>gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 212

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           KK+++++D+   + L +D +E  GY  +   NG EALE+  Q   PD+II D+ + E+ G
Sbjct: 10  KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEQSPVPDMIICDVMMPEMDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               +++++DS    IP + ++A     D  +  + G + Y+ KP      +  ++  + 
Sbjct: 70  YTFVEKLRDDSRTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129

Query: 122 E 122
            
Sbjct: 130 R 130


>gi|165918289|ref|ZP_02218375.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
 gi|165918149|gb|EDR36753.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
          Length = 245

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L    +   G+ A   ++G E   +  +   D++I+DI +    GL 
Sbjct: 6   HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAVDLVILDIMMPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ +S    IP++ +TA + + D     + G + Y+SKP +    +  ++  +  +
Sbjct: 66  LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122


>gi|153206919|ref|ZP_01945737.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212219514|ref|YP_002306301.1| two-component response regulator [Coxiella burnetii CbuK_Q154]
 gi|120576992|gb|EAX33616.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013776|gb|ACJ21156.1| two-component response regulator [Coxiella burnetii CbuK_Q154]
          Length = 245

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L    +   G+ A   ++G E   +  +   D++I+DI +    GL 
Sbjct: 6   HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAVDLVILDIMMPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ +S    IP++ +TA + + D     + G + Y+SKP +    +  ++  +  +
Sbjct: 66  LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122


>gi|114563674|ref|YP_751187.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella frigidimarina NCIMB 400]
 gi|114334967|gb|ABI72349.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella frigidimarina NCIMB 400]
          Length = 331

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+D   N+++ + ++E   Y  +  ++G EAL L  +  PD+I++D+ +  ++G
Sbjct: 9   MPTILIVDDEPANLRVLKKMLEDQ-YRLIFAKSGEEALRLIERDLPDLILLDVMMPGMTG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +Q+K     + +PVI +TA + + DE +    G   YI+KP+S ++    ++ ++
Sbjct: 68  FEVCQQLKTVQRTKAVPVIFITALSDEVDEAKGFDVGAVDYITKPVSPAVVKARVRTHL 126


>gi|320324583|gb|EFW80660.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            glycinea str. B076]
          Length = 1170

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|304309811|ref|YP_003809409.1| Response regulator receiver:metal-dependent phosphohydrolase, HD
           subdomain [gamma proteobacterium HdN1]
 gi|301795544|emb|CBL43742.1| Response regulator receiver:metal-dependent phosphohydrolase, HD
           subdomain [gamma proteobacterium HdN1]
          Length = 338

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D  +N+++ R  +E   Y  +  ++G +ALELA    PD+I++DI + E+SG 
Sbjct: 9   RTLLLVDDEPVNLQVLRYALEND-YNLIFAKSGQKALELANDAHPDLILLDIMMPEMSGY 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K++S  + IPVI VT+   + +EE+  + G   YI+KP+S +I    ++ ++
Sbjct: 68  EVCKALKDNSNTRSIPVIFVTSLDNEMNEEKGLELGAVDYITKPVSPAIVRARVRTHL 125


>gi|298486528|ref|ZP_07004588.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159005|gb|EFI00066.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 645

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G EA+  A      +I+MD +L  + G 
Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +     G + Y++KP   +   + + +++
Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLHAGMDDYLAKPFKHADLQQVLHRWL 634


>gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E        L+   GY      +G++AL     H  D++++D+ L   SG
Sbjct: 1   MTRILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGADLVLLDLMLPGASG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S+   +P+I +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRAKSK---VPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 246

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+D     +L    +   G+      +G EAL  AR  +PD +I+D+ L ++ GL 
Sbjct: 22  RVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGLT 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   E  ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 82  VLGRLRR--EAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 139


>gi|257487872|ref|ZP_05641913.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            tabaci ATCC 11528]
          Length = 1170

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           KV++V+D     KL  D +   GY  ++  +G+EA++   ++K   +II+D+ +  + G 
Sbjct: 5   KVLVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENKDIALIILDVMMPRMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +QI++DS+   +P+I +TA   + DE +  + G + YI+KP S  I    +   I  
Sbjct: 65  EVCRQIRKDSK---VPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAIIRR 121

Query: 123 A 123
           A
Sbjct: 122 A 122


>gi|208702171|ref|YP_002267282.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|208658026|gb|ACI30396.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 226

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59
           +KKV+IVED ++  +         GY  +   +G   L+L   ++H   ++I+DI L  +
Sbjct: 1   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+++S    +P+I +TA + + D     + G + Y++KP   SI +   K+ 
Sbjct: 61  DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117


>gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
          Length = 236

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 10/131 (7%)

Query: 1   MLK--------KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM 52
           M+         +V++V+D  +   L    +   G+     ++G++AL  A    PDV+I+
Sbjct: 1   MMATQARSDAPRVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVIL 60

Query: 53  DIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           D+Q+  + GLE  ++++      E+PV+ +TA     D  +  + G + Y++KP  L   
Sbjct: 61  DVQMPRMDGLETLERLRARD--PELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEV 118

Query: 113 METIKKYIGEA 123
              ++  +  A
Sbjct: 119 AARVEGLLRRA 129


>gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1358

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++ +DN         L+   G+      +G  AL  A+ H P +++ D+ +  + G
Sbjct: 686 SARILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHPPHLVLTDVMMPRLDG 745

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + + +K   + Q +PVI ++A A +       + G + Y+ KP S    +  +   +
Sbjct: 746 FGLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARL 804



 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 60/110 (54%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VED+        D +E  G+     R+G+E +E     +PDV ++D+ L  I G 
Sbjct: 1211 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLALRPDVALIDVGLPGIDGY 1270

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
            E+ ++++     +++ ++A+T +       + ++ G + +++KPI++   
Sbjct: 1271 EVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1320


>gi|71735952|ref|YP_274795.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|71556505|gb|AAZ35716.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            phaseolicola 1448A]
          Length = 1170

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYECLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|303258341|ref|ZP_07344344.1| DNA-binding response regulator ColR [Burkholderiales bacterium
           1_1_47]
 gi|330999877|ref|ZP_08323578.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302858787|gb|EFL81875.1| DNA-binding response regulator ColR [Burkholderiales bacterium
           1_1_47]
 gi|329573562|gb|EGG55164.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 228

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVEDNE       + +E+  Y    T +G++AL L   +K D+I++DI +  + G
Sbjct: 1   MPTILIVEDNEDIRLNLVEYLESKNYQTDNTDDGLKALALTIVNKYDLIVLDIMIPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + ++++        P+I ++A     D       G + YI KP SL+  +  I+  + 
Sbjct: 61  LRLCRELRSRGNT--TPIIILSAKDSTDDRIMGLSEGADDYIVKPFSLAELLLRIQAVLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|223934982|ref|ZP_03626901.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896435|gb|EEF62877.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 213

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED     +     +E  G+  L   +G   LELA   +PD+I+ D+ +  + G
Sbjct: 1   MKKILVIEDQPEMRRSLETTLEMEGFEVLLAEDGRMGLELALAARPDLILCDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++ D+    +P I +TA A K D       G + Y++KP++ S  +  I   + 
Sbjct: 61  HGLLQVLRADNRTAHLPFIFLTARADKQDARTGMNLGADDYLTKPVAKSDLLAAISSRLQ 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
 gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
          Length = 235

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D +    L    +E  GY   +  NGM+AL+       D+ I+D+ L +I 
Sbjct: 1   MNESILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       P+I +TA     D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFRICQKIREQYYY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 964

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 75/117 (64%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N ++ ++L+E  G      ++G++A+    + + D+I+MDIQ+ E+ G E
Sbjct: 695 RVLLVEDNPINQQVAQELLEQCGLQVSIAQDGVKAVAAVERERFDLILMDIQMPEMDGYE 754

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I++  E   +P+IA+TA AM GD +R    G + +++KPI +    + + K++
Sbjct: 755 ATRRIRQLPERARLPIIAMTAHAMSGDADRSLAAGMQGHLTKPIEIQPLYDMLGKWL 811



 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 38/122 (31%), Gaps = 25/122 (20%)

Query: 13  LNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEISGLE------ 63
           +  +     +   G       +    L L +Q   H   ++I+  Q       E      
Sbjct: 559 VVRRAIEQNLLGFGVKVEMVDDAEGLLALLKQAYAHPVALVIIGWQA-----YEAGVVER 613

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC-----EAYISKPISLSIFMETIKK 118
           + +++++     ++ V+A         +      G      +  I K  S      ++++
Sbjct: 614 LKRRLQQQPHKPKVLVLA------PSFKVASLNAGAAHYGVDGVIPKACSPLKLANSVER 667

Query: 119 YI 120
            +
Sbjct: 668 LL 669


>gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
 gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED        +  +E   +      +G   L  A     D+I++D  L  + GLE
Sbjct: 2   RILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRMLPGLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +Q++E     + P+I +TA     D       G + Y+ KP +    +  I+  +  
Sbjct: 62  ICRQLRESG--AKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRR 118


>gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 240

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED     +L    +  +G+      +   A        PDVI++D  L   SGL +
Sbjct: 7   VLIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDAVLPDVILLDWMLPGESGLAL 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+ +     + IP+I +TA   + D       G + YI+KP S    +  ++  +  
Sbjct: 67  AKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRAVLRR 124


>gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum EA 2018]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED     +L +D +E S +      +G   LE A++   ++II+D+ L EI G
Sbjct: 1   MKKILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI++   ++  P++ V+A     D+ R    G + Y++KP S S  +  +K +I 
Sbjct: 61  FEICKQIRK---IKNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|107023338|ref|YP_621665.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116690421|ref|YP_836044.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170733741|ref|YP_001765688.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|206560945|ref|YP_002231710.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|105893527|gb|ABF76692.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648510|gb|ABK09151.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169816983|gb|ACA91566.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|198036987|emb|CAR52908.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 241

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|330985282|gb|EGH83385.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv.
            lachrymans str. M301315]
          Length = 1170

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990


>gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED     +L +D +E S Y      +G     +A +    + I+D+ L    G
Sbjct: 1   MSRILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYVLCILDVMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K I+++   + IP+I V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKAIRKE---KNIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229589254|ref|YP_002871373.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361120|emb|CAY47983.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 782

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 59/110 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  + + ++   G   +   +G EAL+     + D+++MD  +  + G 
Sbjct: 659 ARILLVEDNAVNQLVAKGMLSKLGCEVIVAAHGGEALKFLEDQRFDMVLMDCNMPVMDGY 718

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           E ++QI+      ++P++A+TA A+  + ER R  G   Y++KP      
Sbjct: 719 EASRQIRRSGRWPDLPIVALTANALSEERERCRAAGMNDYLAKPFRREEL 768


>gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    ++     +E  G+  L  ++GM A+ + ++H+P V+I+D+ +  + G E
Sbjct: 11  KILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMPGMDGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +K+   +     I +TA     D  +    G + Y+ KP S    +  I   I 
Sbjct: 71  VCRMLKKIQNVAT---IMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIR 125


>gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 237

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 59/122 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED     +L    +  +GY   +      A  + +   P++II+D  L   S
Sbjct: 1   MTHRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K+++ +   + +P++ +TA + + D+      G + Y++KP S    +  ++  +
Sbjct: 61  GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|154706185|ref|YP_001425412.1| two-component response regulator [Coxiella burnetii Dugway
           5J108-111]
 gi|154355471|gb|ABS76933.1| two-component response regulator [Coxiella burnetii Dugway
           5J108-111]
          Length = 245

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L    +   G+ A   ++G E   +  +   D++I+DI +    GL 
Sbjct: 6   HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIMMPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ +S    IP++ +TA + + D     + G + Y+SKP +    +  ++  +  +
Sbjct: 66  LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122


>gi|121603982|ref|YP_981311.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
 gi|120592951|gb|ABM36390.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
          Length = 1158

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +KV++V+D+  N+      +E  G      RNG EA+         D+++MDI +  + G
Sbjct: 1034 RKVLLVDDDVRNIFALTSALENKGLRVEIGRNGFEAISKLNDVSDIDLVLMDIMMPGMDG 1093

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            LE T++I++D+   ++P+IAVTA AMK D+E+  + G   Y++KPI L      ++ ++
Sbjct: 1094 LEATRRIRQDARFPKLPIIAVTAKAMKDDQEQCLEAGANDYLAKPIDLDRLFSLLRVWM 1152



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED+ +  ++  DL     Y  L      +   LA Q  P+ I++D+ L +  GL +
Sbjct: 768 VLVIEDDVVFAQVLYDLAHELNYSCLVAHGAEDGFALATQFVPNAILLDMGLPDRPGLSV 827

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE+   + IPV  V+        E   + G   Y  KP S     E  +K 
Sbjct: 828 LQRLKENPHTRHIPVHVVSGDDRS---EAALQMGAIGYALKPTSRDQLKEVFRKL 879



 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V++VE++ L      +LI            G EAL L      D +I+D++L +I G 
Sbjct: 888 KHVLLVENDALQRTSLMELIGDDDVQITAVATGGEALALLAGTIFDCMIIDLKLPDIQGY 947

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ +++  +S     PVI  T   +   EE 
Sbjct: 948 ELLQRMSTESIGSFPPVIVYTGRTLTRQEEA 978


>gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +AL      KPD++++D+ L    
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLMLPGRD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ + I+ +S    +PV+ +TA +   D     + G + YI KP      +  I+  +
Sbjct: 65  GIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121

Query: 121 GEA 123
             +
Sbjct: 122 RRS 124


>gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL+     K D++I+DI +  + G +
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 67  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 242

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 56/119 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D        +  +E  G+      +G +  E A+   PD+II DI +   +G  
Sbjct: 16  KILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTIFPDLIISDIMMPRSNGYA 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ED +L   PVI +TA  M  D  +    G + YISKP         +K  I  
Sbjct: 76  LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYISKPFDPDELSARVKNVINR 134


>gi|300863635|ref|ZP_07108575.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506]
 gi|300338377|emb|CBN53719.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506]
          Length = 945

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN         ++  + +  +  RNG E LE+A+   PDVI+ D+ +  +SGL+
Sbjct: 594 TVLVVDDNPDLRTYVARILRQANFSVVLARNGAEGLEMAKSDDPDVIVTDLMMPVVSGLD 653

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + I+ED  L+  PVI +TA A +       + G +AY+SKP +    +  ++  +
Sbjct: 654 LIRMIREDDVLKGTPVILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLV 710


>gi|237712721|ref|ZP_04543202.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|229447235|gb|EEO53026.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
          Length = 1026

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVEDN+        L++   Y+     NG +AL +AR++ PD+I+ D+ + E+ G 
Sbjct: 780 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 838

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI------ 116
           E+   +K D E   IPV+ +TA   + D     + G +AYI+KP S+++    I      
Sbjct: 839 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 898

Query: 117 KKYIGEA 123
           +  +  A
Sbjct: 899 RALLRRA 905


>gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 922

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED  +NM + R L+E  G+      NG + L++ R  + DVI+MDIQ+  ++G+E
Sbjct: 801 RVLLVEDERVNMLMARRLLENLGHTVTCAENGEKCLQVLRGERFDVILMDIQMPVMNGME 860

Query: 64  ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +T  I+   + +    IP++A+TA A + D E   K G   YISKP        T++++ 
Sbjct: 861 VTHLIRNSEDFRHVADIPIVALTAHATRRDREAALKAGMNEYISKPFEKEHLEATLQRFA 920

Query: 121 GE 122
           G 
Sbjct: 921 GR 922


>gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D    ++     +   G+      +G +A+ +A   +P V+++D+ +  + GLE
Sbjct: 8   RILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVMMPGMDGLE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +++KE  E +++ VI +TA     D  +    G + Y+ KP S    +  I+  + 
Sbjct: 68  VCRRLKE--EGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLR 123


>gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED     +L RD +E + +      +G + LE A     D++I+DI L ++SG
Sbjct: 1   MKKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ KQI+     ++IP+I V+A   + D+ R    G + YI+KP S    +  +K ++ 
Sbjct: 61  FEVCKQIRA---AKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|169794308|ref|YP_001712101.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|184159890|ref|YP_001848229.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213159117|ref|YP_002321115.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|215481865|ref|YP_002324047.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|239502828|ref|ZP_04662138.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB900]
 gi|260553330|ref|ZP_05825944.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260557862|ref|ZP_05830075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|293610528|ref|ZP_06692828.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|299768353|ref|YP_003730379.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|301345738|ref|ZP_07226479.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB056]
 gi|301511640|ref|ZP_07236877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB058]
 gi|301596188|ref|ZP_07241196.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB059]
 gi|332850113|ref|ZP_08432500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332871439|ref|ZP_08439956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332873325|ref|ZP_08441279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
 gi|169147235|emb|CAM85094.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|183211484|gb|ACC58882.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|213058277|gb|ACJ43179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|213987672|gb|ACJ57971.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|260405167|gb|EEW98665.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260408653|gb|EEX01958.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|292826872|gb|EFF85237.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|298698441|gb|ADI89006.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|322509805|gb|ADX05259.1| phoB [Acinetobacter baumannii 1656-2]
 gi|323519817|gb|ADX94198.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|325123908|gb|ADY83431.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter
           calcoaceticus PHEA-2]
 gi|332730962|gb|EGJ62268.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332731476|gb|EGJ62766.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332738388|gb|EGJ69261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
          Length = 236

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63
           ++IV+D     ++    ++ +G+  LQ  +  +A ++    +P +I++D  L   +SG++
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K D  L EIPVI +TA   +  + +    G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125


>gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
 gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
          Length = 980

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
           K+ +V+D  +N+++  + +    Y      NG+EAL    + +KPD+I++D+ + +++G 
Sbjct: 725 KIFVVDDEPVNIQVLINHLTLQNYAISIASNGLEALAQVEKGYKPDIILLDVMMPKMTGY 784

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++++E   + E+P++ +TA     D     + G   Y++KPIS    +  +K ++
Sbjct: 785 EVCRKLREVFPVNELPIVMLTAKNQVSDLVEGLESGANDYLTKPISKHELIARLKMHL 842


>gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 231

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 2   LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           ++++  ++ +D +    L    +E  GY  ++  +G EA+++  +   D++I+DI +  I
Sbjct: 1   MERISILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQVIDLLILDIMMPNI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ +QI+E      +P+I ++A     D+ +    G + Y++KP +    +  +   
Sbjct: 61  DGYEVARQIREQ---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
 gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
          Length = 236

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 10/131 (7%)

Query: 1   MLK--------KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM 52
           M+         +V++V+D  +   L    +   G+     ++G++AL  A    PDV+I+
Sbjct: 1   MMATQASSDAPRVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVIL 60

Query: 53  DIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           D+Q+  + GLE  ++++      E+PV+ +TA     D  +  + G + Y++KP  L   
Sbjct: 61  DVQMPRMDGLETLERLRARD--PELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEV 118

Query: 113 METIKKYIGEA 123
              ++  +  A
Sbjct: 119 AARVEGLLRRA 129


>gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 250

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 1   MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M K     +++V+D     +L    +  +GY      +G EA+E+  + KPD+II+D+ L
Sbjct: 6   MSKATEATIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML 65

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I G  +T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I
Sbjct: 66  PDIDGFTVTRRIRQEGITA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 123

Query: 117 KKYIGE 122
           +  +  
Sbjct: 124 RAILRR 129


>gi|229824516|ref|ZP_04450585.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271]
 gi|229786117|gb|EEP22231.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271]
          Length = 237

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +   ++    +   GY     ++G +A++LA+Q   D++I+DI +    G+E
Sbjct: 2   RILLAEDEQQLARVVMTALAHEGYQVDWAKDGQQAVQLAQQTVYDLMILDIMMPVKDGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K+I+         VI +TA A   D       G + Y++KP SL   +  ++     
Sbjct: 62  ALKEIRASGHTNH--VIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118


>gi|224538757|ref|ZP_03679296.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519649|gb|EEF88754.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1434

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++I+EDNE       +++    Y+  +  NG + L+ A    PD++I DI + E+ G+E
Sbjct: 1170 RILIIEDNEELRHFICNVLSKD-YVVFEAENGKQGLDKALAEMPDIVISDIMMPEMDGIE 1228

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
              K++K +S +  IPVI ++A +   D+ +  + G + YI+KP S +     +   
Sbjct: 1229 FLKRVKANSNICHIPVILLSAKSSLSDQIQGLEYGADEYITKPFSSTYLKAKVDSL 1284


>gi|189463212|ref|ZP_03011997.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136]
 gi|189430191|gb|EDU99175.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136]
          Length = 1425

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+        +++   Y  L+  NG   LE      PDV++ D+ + E+ G+E
Sbjct: 1156 TILVVEDNDELRHFIVHILQKE-YRVLEAPNGRIGLEKVLAEMPDVVVSDVMMPEMDGIE 1214

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   +K +  +  IPVI ++A A   D  +  + G + YI+KP S +     +K  +
Sbjct: 1215 LLNAVKTNHNVCHIPVIILSAKASLDDRIKGLEYGADGYITKPFSSAYLRARLKSVL 1271


>gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E+T
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 62  KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116


>gi|115352497|ref|YP_774336.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282485|gb|ABI88002.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 251

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 11  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 71  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 224

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +  +   +  +E   Y  +   +G E L++A +   D++I+D  L ++ GL 
Sbjct: 2   RILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAMEKNFDLLILDWMLPKMDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K++K        PV+ +TA     D       G + Y++KP + +  +  ++  +  +
Sbjct: 62  VLKELKSQKNT--TPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRS 119


>gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +K  V+++ED +   +     +   GY      +G+  L   R+  PD++++D+ L  
Sbjct: 1   MERKPLVLVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKFREVAPDLVVLDLMLPV 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ ++I++       P+I +TA     D+      G + Y+ KP S+   +  ++ 
Sbjct: 61  LDGLEVARRIRK---TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRA 117

Query: 119 YIGE 122
           ++  
Sbjct: 118 HLRR 121


>gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
 gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D E  ++L    ++  G+     R G EA++ AR  +PD +I+D+ +  + G +  
Sbjct: 2   LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPVMDGFDAV 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+++ D    + PV+ +TA     D       G + Y++KP SL   +  ++  +  
Sbjct: 62  KRLRADG--CDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRR 116


>gi|167625694|ref|YP_001675988.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
            halifaxensis HAW-EB4]
 gi|167355716|gb|ABZ78329.1| PAS/PAC sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
          Length = 1203

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 76/117 (64%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY      NG  AL++  + + D ++MDIQ+  + GL  
Sbjct: 1081 VLLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMIDKTQYDAVLMDIQMPVMDGLTA 1140

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            TK++++    +E+PVIA+TA AM GD E+    G  A+I+KPI L+   ET+  +IG
Sbjct: 1141 TKELRKRYSTEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWIG 1197



 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K ++++DN   ++++  ++    +      +G E L    ++  D++++D  + E+ G+E
Sbjct: 937  KTLVIDDNPTALQIYSSVLRDFHFNVDTAASGPEGLYKLGKNPVDLLLLDWMMPEMDGIE 996

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + KQI     D  L++ P +I +TA+  +   + + +    A + KP   S   + +
Sbjct: 997  VIKQIDAMVADGRLEKRPIIIMMTAYTAEPMHKDVEQANVYALLQKPFKASALFDEV 1053


>gi|153809460|ref|ZP_01962128.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185]
 gi|149127920|gb|EDM19142.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185]
          Length = 1338

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+       D++ T GY      NG EAL + R+  PD++I DI + E+ G 
Sbjct: 1078 QRILIVEDNDDLRNYLVDMLRT-GYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMGGD 1136

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK D E+  IPV+ +TA   +       + G +AYI+KP S+ I   TIK  +  
Sbjct: 1137 ELCATIKGDLEMSHIPVVLLTALGDEKHMLEGLEIGADAYITKPFSVGILKATIKNILTN 1196

Query: 122  EA 123
             A
Sbjct: 1197 RA 1198


>gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1666

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VEDNELN ++  +++  +G +     NG  A++ A+    D+I+MD+Q+  + G+ 
Sbjct: 1345 RVLLVEDNELNQEVASEILGDAGLVVDIAANGQIAVDKAKTGHYDLILMDMQMPVMDGVT 1404

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T++I+     Q++P+IA+TA AM+ D E+  + G   +I+KPI       T+ K++G 
Sbjct: 1405 ATREIRAMG-FQDLPIIAMTANAMQADREKCLEAGMNDHIAKPIDPDSMFATMMKWLGR 1462



 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQE 58
            +++++V+DNE    +  D++ +  +       G  A++  R+       +V+ +D Q+  
Sbjct: 1197 RRMLVVDDNENARAVLVDMLSSMSFEVDSVEGGAAAIDAIREAMLDQPYEVVFLDWQMPG 1256

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + GLE+ ++I  D  L   P +I VTA+  +   +  +       + KP++ +   ++I 
Sbjct: 1257 MDGLEVAERI-HDIRLPFPPHLIMVTAYGREEIIKGAQAADIGEVLVKPVNPAALFDSIM 1315

Query: 118  KY 119
            + 
Sbjct: 1316 RV 1317


>gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 234

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEKQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 226

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+    ++   ++ T G+  +   +G +A++  R  +PD+I++D+ L  + 
Sbjct: 1   MTSRILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTERPDLILLDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI  +++ +S    +P+I +TA     D  +  + G + YI KP +    +  I+  +
Sbjct: 61  GIEICTRVRAESG---VPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|189351171|ref|YP_001946799.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189335193|dbj|BAG44263.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 241

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1]
 gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1]
 gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  +   D++I+DI L E+ 
Sbjct: 1   MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEVVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1287

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEISG 61
            ++++VEDNE+N  L  +L+   G       NG EAL          D+++MD+Q+  + G
Sbjct: 939  RILLVEDNEMNRTLAVELLRRRGAQIDSAVNGCEALARILHEAAPYDIVLMDLQMPGMDG 998

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             E T++I+ D     +P+IAVTA AM  + +R R+ G   Y++KP+++   +  I+
Sbjct: 999  YEATRKIRADLRFSALPIIAVTAHAMVEERDRCREVGMNGYLTKPLNVPEMINLIR 1054


>gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+ +  +  R  +E  GY  +   +G+  LE AR+ +PD++I+D+ L  + G
Sbjct: 3   MSTILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRDQPDMVILDVMLPRLDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++++SE   +P++ +TA   + D     + G + Y++KP SL   +  ++  + 
Sbjct: 63  FSVCRILRQESE---VPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
 gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
          Length = 252

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 50/110 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D        +  +E  G+      +G E    A++  PD++I D+ +  + G 
Sbjct: 26  ARLLLVDDEPGLRTAVQAYLEDEGFDVTTANDGEEGWTAAQELIPDLVISDVMMPRLDGY 85

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
            + K+++ D  L   PVI +TA  M  D     + G + YI KP      
Sbjct: 86  GLLKRLRGDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDEL 135


>gi|299144931|ref|ZP_07037999.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298515422|gb|EFI39303.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1372

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  L   NG E  + A    PD+++ DI +  + G+ + 
Sbjct: 1114 LIVEDNEEIQKYISESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED     IP+I +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1173 RQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227


>gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily)
           [Arthrospira platensis NIES-39]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D           +   GY   +   G++A  LA+ H  D++I+D  L   SGLE
Sbjct: 2   RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I  Q++        P++ +TA     D  +    G + Y+ KP  L   +  ++  +  
Sbjct: 62  ICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 800

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           KKV+IV+D+  N    +  +   G   +   +G+  L++  ++   D+++MDI +  I G
Sbjct: 680 KKVLIVDDDHRNRFALQSALGKQGITVISAEDGVACLDILEKNTTIDLVLMDIMMPHIDG 739

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  K I++  +   +P+IA+TA AM  D+++  + G   Y+SKP++L      ++ ++
Sbjct: 740 FETMKHIRQSRKHIHLPIIALTAKAMNHDKQKCLQAGANDYVSKPVNLQQLFSVMRVWL 798


>gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 241

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   +L +  +E   Y+  +  +G EALE A  +  DVI++D+ L    G+E
Sbjct: 9   RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + K+I+     +  P++ +TA   + +  +  + G + YI KP S    +  +K
Sbjct: 69  VCKEIRAQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119


>gi|21229109|ref|NP_635031.1| putative transcriptional regulator [Methanosarcina mazei Go1]
 gi|20907666|gb|AAM32703.1| putative transcriptional regulator [Methanosarcina mazei Go1]
          Length = 292

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 65/118 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D   N++L    +    Y       G EAL +  + KPD++++D+ + E++G E
Sbjct: 16  KVLIVDDMRENVELMEAYLAVEPYKVFCAYGGKEALRIVDKEKPDIVLLDVMMPEVNGYE 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + K +KE+ E Q IPV+ +TA +   D  +  + G + +++KPI+       +K  + 
Sbjct: 76  VCKILKENPETQFIPVLMLTALSELEDRIKGIEVGADDFLTKPINRLELKTRVKSLLR 133


>gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 7169]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EI 59
           M  K+++VED     +L    ++ S +  +Q  +   A       KPD+I++D  +    
Sbjct: 1   MNAKILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGE 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG++  +++K++    +IP+I +TA   + ++      G + YI+KP S    +  ++  
Sbjct: 61  SGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+       + L+E +GY      +G EALE      PD+++ D+ +  + GL 
Sbjct: 6   TVLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPVMDGLG 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +P++ +TA +   D       G + Y+SKP      +  ++     
Sbjct: 66  LCRMLRAAGNA--VPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARR 122


>gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED     K+    +E   Y   +  NG +AL+L   +  ++II+D+ + ++SG
Sbjct: 1   MDKILIVEDEYKIRKIITSYLE-EDYEVYEAENGEKALKLFADNNFNLIILDLMIPKLSG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I++ S+   IP+I +TA + + ++      G + YI+KP S       IK  + 
Sbjct: 60  EKVCQKIRQSSQ---IPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVLR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|302843336|ref|XP_002953210.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f.
           nagariensis]
 gi|300261597|gb|EFJ45809.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f.
           nagariensis]
          Length = 1844

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 1   MLKKVMI--VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQL 56
           M K+ ++  V+D+ +N  + + L+ ++GY  +   +G EAL         PD++++D  +
Sbjct: 768 MYKRFLLLSVDDDHVNQSVVKSLLGSTGYEVVAVPSGPEALRYVATAPALPDLVLLDCMM 827

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            E+ G E+ ++++  +    +P+I V+A   +         G + Y++KP   +  +  I
Sbjct: 828 PEMDGYEVLQRLRAMTPNVHVPIIMVSAQTEEEHVVCGLDLGADDYVTKPFKRNELLARI 887

Query: 117 KKYI 120
           +  +
Sbjct: 888 RAQL 891



 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 6    MIV--EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
            +IV  +D+++N  + + ++ +  Y  ++   G + L            PD++++D  L +
Sbjct: 991  LIVCIDDDDVNQVVLQGMLASQHYRYVRASTGAQGLSYVCGTHNGGIPPDLVLLDCSLPD 1050

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            ++G ++ + I++    Q++PVI ++A   +       K G   Y++KP   +  +  I++
Sbjct: 1051 MTGFDVCRCIRQMYNKQQVPVIMLSARHNESAVVEGLKCGANTYVTKPFRRNELLARIRQ 1110

Query: 119  YIG 121
            ++ 
Sbjct: 1111 HLR 1113


>gi|307153247|ref|YP_003888631.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306983475|gb|ADN15356.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 379

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   GY   +  NG  A+   +   PD+I++DI +  ++G ++
Sbjct: 6   ILVVDDTPDNVRLLATMLSEKGYKVRKALNGQIAINTVQTVPPDLILLDINMPGMNGYQV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K D + Q+IPVI ++A     D+ +  K G   YI+KP      +  ++  +
Sbjct: 66  CQALKSDEKTQDIPVIFISALDDVLDKVKAFKVGGVDYITKPFQGEEILVRVENQL 121


>gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes]
 gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes]
 gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes]
 gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes]
 gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes]
 gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E+T
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 62  KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116


>gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2450

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV++V+D+  N+     ++E  G   +   NG  A+E+  +++  DV++MDI + E+ G
Sbjct: 2330 KKVLVVDDDMRNIFALTSVLENQGLQVIFAENGRAAIEMLEKNRDVDVVLMDIMMPEMDG 2389

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             E  + I+++ +  ++P+IA+TA A+K D E+    G   Y+ KP+     +E I+
Sbjct: 2390 YETMQAIRQNLQYAQLPIIAITAKALKDDREKCMAAGASDYLPKPVDTDKLIELIR 2445



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 4    KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++ I+ED+    ++   +    G+  L    G   L +A ++ P  I +DIQL  + G 
Sbjct: 2060 RILLIIEDDLKFARIMAQMAREKGFKVLVASRGDSGLAMANEYLPHAITLDIQLPVVDGW 2119

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKY 119
             + +++K +   + IPV  ++      D+      G   Y++KP+S   L      +  +
Sbjct: 2120 SVLERLKRNGRTRHIPVHVIS----VMDKHLGNTHGAFGYLTKPVSKEGLERVFSQLAHF 2175

Query: 120  IGE 122
            +  
Sbjct: 2176 LER 2178



 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 2    LKKVMIVEDNELNMKLFRDLI-ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
             ++++++ED+++       L+ E S         G EAL    + + D +++D+ L ++ 
Sbjct: 2180 SRRLLLIEDDDIQRDSLVKLLSEGSDVEVTGVATGQEALHKLEEGEYDCLVIDLLLPDMD 2239

Query: 61   GLEITKQIKEDSELQEIPVIA-----VTAFAM 87
            G ++ +++K     +++P++      +TA   
Sbjct: 2240 GAKLVEEVKTQPRFRDLPIVIYTGKELTAKDE 2271


>gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VED      +  + +  +GY      +G  AL+  R+  PD++++DI L  + G 
Sbjct: 5   RKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMDGT 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++       IPVI VTA   + D     + G + YI KP S    +  I      
Sbjct: 65  AVCRELR---RFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRR 121


>gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 993

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 76/125 (60%), Gaps = 7/125 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           K+V++V+D E N +L   +++ +G   +   NG EAL++  +     +  ++++MD+Q+ 
Sbjct: 582 KRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDMIAEGNESGYPYELVLMDMQMP 641

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G   T+ ++E  +    PVIA+T  AM+GD E+    GC+ +++KP++L   +E + 
Sbjct: 642 VLDGYSATRLLREREDT--TPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLDELLEMVS 699

Query: 118 KYIGE 122
           +Y+GE
Sbjct: 700 QYLGE 704


>gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1]
 gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D +    L    ++  G+  L+  +G E L+L ++HK  +I++D+ + ++ G++
Sbjct: 5   TILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKVHLIVLDLMMPKVDGIK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E   + E+P+I +TA +   D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---VAEMPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRR 120


>gi|323525232|ref|YP_004227385.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382234|gb|ADX54325.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 241

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     L RD +   G       +         + +PD+I++D+ +  + 
Sbjct: 1   MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   ++++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL+     K D++I+DI +  + G +
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 67  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|224535984|ref|ZP_03676523.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522398|gb|EEF91503.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1111

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++VEDNE  + L   L+ T  Y      NG EALE+      D+I+ D+ +  + G
Sbjct: 852 SHTLLLVEDNEDLLGLMVKLLGTD-YKIHTATNGKEALEIVESEDIDLIVSDVMMPVMDG 910

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +E  + IK + +   IP+I +TA   + D     + G +A+I+KP +LS+    I   +
Sbjct: 911 IEFCRSIKGNFDTSHIPLILLTAKKQEEDRVEAYESGADAFITKPFNLSVLHARIGNLL 969


>gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D    +KL    +   GY  L   +G+EALE+ + HK D+II+D+ + ++ G++
Sbjct: 5   TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKNHKVDLIILDVMMPQMDGIQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I+E++     P+I ++A + + D+      G + Y++KP S    +  IK  +  
Sbjct: 65  ACMKIREEN---NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRR 120


>gi|81300626|ref|YP_400834.1| response regulator receiver domain-containing protein
           [Synechococcus elongatus PCC 7942]
 gi|81169507|gb|ABB57847.1| response regulator receiver domain protein (CheY-like)
           [Synechococcus elongatus PCC 7942]
          Length = 121

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE N  +    +   G+  +   +G   ++ AR+ +PD+I+MD+ L  + G
Sbjct: 1   MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+Q+K D ELQ+ PVIA+TA AM  D E+    GC+ Y +KPI L   +  I + + 
Sbjct: 61  WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 232

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 62/117 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED+E   +L        G+   QT +G +AL L  +  PD++++D  ++ + G+E+ 
Sbjct: 7   LLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVEERVPDIVLLDWMIESLPGIEVC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++++ + +   +P+I +TA   + D  R  + G + Y++KP S    +  +   +  
Sbjct: 67  RRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRR 123


>gi|291568215|dbj|BAI90487.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 394

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L   ++   GY   +  NG  AL+      PD+I++DI + E+ G ++
Sbjct: 13  ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAETPDLILLDIMMPELDGYQV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K +K+D   +EIP+I ++A +   D+      G   YI+KP  +   +  ++  +
Sbjct: 73  AKYLKDDPTTREIPIIFLSALSDTMDKVLAFDLGGVDYITKPFHVQEVLARVRTQL 128


>gi|15926996|ref|NP_374529.1| truncated (putative response regulator ArlR [S [Staphylococcus
           aureus subsp. aureus N315]
 gi|13701213|dbj|BAB42508.1| truncated (putative response regulator ArlR [S [Staphylococcus
           aureus subsp. aureus N315]
          Length = 133

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED +   +     +    Y      +G + L+ A  H  D+II+D+ L  I+G
Sbjct: 1   MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++    Q  P+I +TA +   D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 228

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   +++VED++   +L +  + T  Y  +   +G+E +    +   D+I++D+ +  +
Sbjct: 8   MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 67

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G E++K I+  S    +P+I +TA   + D+ +    G + YI+KP S  + +  ++  
Sbjct: 68  NGFEVSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 124

Query: 120 IGEA 123
           +  +
Sbjct: 125 LRRS 128


>gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 203

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 59/117 (50%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+V+D+   + L  D +E  GY      NG +ALE   +  P++II DI + E+ G  + 
Sbjct: 1   MLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEEVPELIICDIMMPEMDGYTLV 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K I+E+S+   IPVI ++A     D  +    G + Y+ KP      M  ++  + +
Sbjct: 61  KLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQ 117


>gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
 gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
          Length = 231

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IVED+    +L RD +E +G+      +G E L LAR  +  ++++D+ L  ISG
Sbjct: 1   MRKILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVMLPGISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            EI +++++    + +PV+ VTA     D+ R    G + Y+ KP S S  +   + +I
Sbjct: 61  FEICREVRKS---KNVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHI 116


>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 239

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    ++L    ++  G+      +G +ALE+AR+ KP+  I+D+ +  + G E
Sbjct: 11  KVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVMMPGMDGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++ +    + PV+ +TA     D       G + Y++KP SL   +  ++  +  
Sbjct: 71  LLGKLRAEGL--DAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 127


>gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 224

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I+ED E    L +D +  +G+ A     G  ALE   +  PD +I+DI L E+ 
Sbjct: 1   MNKRILIIEDEEQIALLLKDYLSQAGFEAHMHGTGKGALETVEKISPDAVILDIMLPEVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I + I++ S L   P+I +TA   + D     + G + YI KP S    +  +K  +
Sbjct: 61  GLDICRGIRKKSAL---PIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E        L+   G+ A     G EALE   ++  D++++D+ L  +SG
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ+++ S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
          Length = 240

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED E   +     +   GY   +  NG   LE A+  + D++++D+ L E++
Sbjct: 1   MAATILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVMLPELN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++       +PVI +TA     D+      G + YI+KP ++   +  I++ +
Sbjct: 61  GLEVLRRLR---RTSNLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRAL 117

Query: 121 GEA 123
            ++
Sbjct: 118 KKS 120


>gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 223

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           + KV+++ED E    + +  +E +GY  L  +NG E L+L  ++K   +I++DI L +IS
Sbjct: 1   MHKVLVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENKDIKIILLDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+E     ++PV+ +TA   + D+    + G + Y+ KP S    +  +K  +
Sbjct: 61  GWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 SR 119


>gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +  +GY  L+  +G EA+++    K  D++++D+ +  + G 
Sbjct: 5   KILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTKGIDLLVLDVMMPRMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++   + E+P+I +TA   + DE +    G + YISKP S  I +  I+  +  
Sbjct: 65  EVVREIRK---VSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRR 121


>gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 61/118 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++++D+   + L +D +E  GY      NG EALE+  Q  PD+II D+ + E+ G 
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGYEVNTAENGREALEILEQDIPDMIICDVMMPEMDGY 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +Q++++     IPV+ ++A     D  +    G + Y+ KP      +  ++  +
Sbjct: 80  TFVEQVRQNERTGWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 137


>gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 46P47B1]
 gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 103P14B1]
 gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 12P80B1]
 gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC8]
 gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC1]
 gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC7]
 gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis CO72]
 gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis O35E]
 gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 101P30B1]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EI 59
           M  K+++VED     +L    ++ S +  +Q  +   A       KPD+I++D  +    
Sbjct: 1   MNAKILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGE 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG++  +++K++    +IP+I +TA   + ++      G + YI+KP S    +  +K  
Sbjct: 61  SGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|318079812|ref|ZP_07987144.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+E   +     +   G+      +G E L       PDV+++D  L  + G
Sbjct: 1   MSRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++   E   +P++ VTA     D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  LEVCRRLR-TPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|299145092|ref|ZP_07038160.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
 gi|298515583|gb|EFI39464.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
          Length = 1330

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDN+       + ++ + Y      NG EALE+       ++I D+ + E+ G+E+ 
Sbjct: 1084 LIVEDNDDFRNFLINCLKDT-YQVFDAPNGKEALEILAHQSIQIVISDVMMPEMDGMELC 1142

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++IK D     IPVI +TA      E    K G + YI+KP +L I +  I+K +
Sbjct: 1143 RKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKIL 1197


>gi|294979306|pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
           C-Di-Gmp
 gi|294979307|pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
           C-Di-Gmp
          Length = 459

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N++L    +    Y      +G  AL +A +  PD+I++D+ +  + 
Sbjct: 1   MSARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++K+D   + IPV+ +TA   +GD  +  + G   +++KPI   +    ++   
Sbjct: 61  GFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+DNE   +     +    +  +   +  +A +++     D++I++   +   GL 
Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA-KISAGGPVDLVIVNAAAKNFDGLR 212

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T  ++ +   +++PV+A+     +G   +  + G    +S+PI        +K  I  
Sbjct: 213 FTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271


>gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 226

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E   +    L+   G+      NG +ALE   +   D++++D+ L  +SG
Sbjct: 1   MTRVLIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ KQ++       +PVI VTA   + D+    + G + YI+KP S    +  I+  + 
Sbjct: 61  TEVCKQLRGRGA---VPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 235

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED    +   +  ++ +GY      +G   ++L + +  D++I+DI L E++G
Sbjct: 1   MKKIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIMLPEMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ K+I++ +  Q +P++ +TA     +     + G + Y+ KP      +  +K  + 
Sbjct: 61  LDVCKEIRKTN--QSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|218708873|ref|YP_002416494.1| DNA-binding response regulator [Vibrio splendidus LGP32]
 gi|218321892|emb|CAV17879.1| DNA-binding response regulator [Vibrio splendidus LGP32]
          Length = 242

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           ++++V+D++   +L  + +  SG+      +G+E     + Q  PD+I++D+ L    G 
Sbjct: 6   RILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++ S    +P+I +TA + + D+    + G + YI+KP S    M  IK  +  
Sbjct: 66  TLCQRVRKQS---NVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122


>gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 804

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED++   ++ +  +++  Y+     +G   LE A   + D+I++D+ L ++ G++
Sbjct: 2   KLLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLMLPKLDGIQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +Q ++  +L   P++ VTA      + R    G + Y+ KP ++   +  ++  +  
Sbjct: 62  FCQQRRKQGDL--TPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRR 118



 Score =  127 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 61/115 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+MIV+D+   +++ R  +E  G+     ++  +  E   Q  PD++I+D+++ EISG
Sbjct: 507 TAKLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPEISG 566

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           +++ + ++ D    E+PV+ ++A           + G + YI KPI  S  +  I
Sbjct: 567 IDLCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRI 621



 Score = 62.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ--EISGLE 63
           +IV+++    +      +  G  +    N  +A       +PDVI++D+       +GLE
Sbjct: 386 LIVDNDFALAQAIATQAKIWGLKSEIACNLSQAKRAIASFQPDVILLDLFFPDTGENGLE 445

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++      +  IP I +TA        ++ + G   ++ KP++    +E I K +
Sbjct: 446 LLQE--LSQLIPSIPTIVLTAQNDFSFRVKVARLGGVGFLQKPLAPERIVEAIVKVV 500


>gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88]
 gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88]
          Length = 234

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED+E      ++ +E +GY  L    G E  E  ++    ++++DI + E+ 
Sbjct: 1   MKERILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMIDIMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + K I+      ++P++ ++A    G + +    G + YI+KP SL      ++ ++
Sbjct: 61  GLTLCKNIR---LTSDVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|86146088|ref|ZP_01064414.1| Response regulator [Vibrio sp. MED222]
 gi|85836035|gb|EAQ54167.1| Response regulator [Vibrio sp. MED222]
          Length = 242

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           ++++V+D++   +L  + +  SG+      +G+E     + Q  PD+I++D+ L    G 
Sbjct: 6   RILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++ S    +P+I +TA + + D+    + G + YI+KP S    M  IK  +  
Sbjct: 66  TLCQRVRKQS---NVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122


>gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++I+ED     +     +   GY   Q  +G + LE+A +   D+II+DI L  ++G+
Sbjct: 4   KKILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIMLPYMNGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++I+ +SE   +P+I +TA     D+      G   YI+KP ++   +  I+  +
Sbjct: 64  EVLRKIRHNSE---VPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSAL 118


>gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 235

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++++D      +    ++  GY      +G   L +AR  KPD+II+D+ L  + G+
Sbjct: 12  AKILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMARSFKPDIIILDVMLPGMDGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   ++ +S    + VI +TA + + D+      G + Y++KP S    M  IK  +  
Sbjct: 72  ELLAHLRRES---NVYVIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRR 128


>gi|309791782|ref|ZP_07686270.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226188|gb|EFO79928.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 854

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 67/115 (58%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +DN    +L    +   G+  +  R+G+EA+ +A    PD+I+MD+Q+ ++ GL  T
Sbjct: 738 LLADDNTDTRELLSHYLTQKGFRVITARHGLEAVRMANTEHPDLILMDVQMPQLDGLAAT 797

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + I+E   L  +P+IA+TA  M GD ER    G   Y++KP+ LS  ++ I  ++
Sbjct: 798 RLIREMPALHNVPIIALTALVMPGDRERCLAAGANDYLTKPVPLSQLLKLIHFHL 852



 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED++   +L +  +   G       +G EA++        ++++D +L +++  EI 
Sbjct: 22  LVVEDDQGLNRLIQRHLRRHGLHVEGVLSGAEAIQRTATLTDPLLLLDYRLPDMTAKEIV 81

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
             ++        P I +T    +     + K G   Y++K
Sbjct: 82  LTLQHQQRPA--PFIVMTGNGDERIAVEMMKLGARDYLTK 119


>gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 248

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++V+D     +L    +  +G+       G +A+   ++  PD++++D+ L +  G
Sbjct: 10  TAKILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTYQEFDPDLVVLDVMLPDFDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++E     +IPV+ +TA     D+ +    G + Y++KP SL   +  I+  + 
Sbjct: 70  YEVLRRMREQG--SDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILR 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067]
 gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D++   +L    +   G+  L+  +G  A ++    +  + ++D+ + ++ G
Sbjct: 1   MKQILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAAEQIVTSQQVHLAVIDLMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+  +   EIPVI +TA     D+ R  + G + Y++KP      +  I+  + 
Sbjct: 61  FELCQKIR--TSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 304

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++E  G+  +   +G EA+    + +PD+I++D+ L  ++
Sbjct: 79  MKAKILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMN 138

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           G++I K I+  S    +P++ +TA     D     + G + Y++KP     
Sbjct: 139 GIDICKTIRRSSP---VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKE 186


>gi|149191185|ref|ZP_01869443.1| DNA-binding response regulator GltR [Vibrio shilonii AK1]
 gi|148835023|gb|EDL52002.1| DNA-binding response regulator GltR [Vibrio shilonii AK1]
          Length = 242

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEISGL 62
            +++V+D+E    L  + +  SG+      +G+E  L +  +  PD+I++D+ L    G 
Sbjct: 6   HILVVDDDEEIRLLLDEYLTKSGFQVSTAEDGVEMELFIKAKGYPDLILLDVMLPGDDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ DS+   +P+I +TA + + D+    + G + YI+KP S    M  IK  +  
Sbjct: 66  TLCQRVRRDSQ---VPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122


>gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+E  +    + ++   YI     +G  A E       D+I++DI L ++ G+ 
Sbjct: 2   KILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDVFDYDLIVLDIMLPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ +    + P++ +TA     D  +    G + Y+ KP  L      ++  +  
Sbjct: 62  LCQQLRANG--CKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRR 118


>gi|304309736|ref|YP_003809334.1| predicted histidine kinase [gamma proteobacterium HdN1]
 gi|301795469|emb|CBL43667.1| predicted histidine kinase [gamma proteobacterium HdN1]
          Length = 658

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58
            +++VEDN++N  +    ++  G       NG E ++        +   D+I+MD Q+  
Sbjct: 512 HILVVEDNKVNQMVINGYLKKMGCSVEVANNGQEGVDRLGDTTTNRPSFDLILMDCQMPV 571

Query: 59  ISGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G E T++I+   +  L  +P+IAVTA AM+GD ER  + G   Y+SKPI L +    I
Sbjct: 572 MDGFEATRRIRALPNPALAALPIIAVTANAMEGDRERCLQAGMNDYLSKPIDLPVLRSMI 631


>gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    L    +    Y   +  + +EAL+   + K D+ I+D+ +  + 
Sbjct: 1   MSTNILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSIDEIKYDLAILDVMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+E       PVI +TA   + D+      G + YI+KP S    +  +K  +
Sbjct: 61  GFKLCQKIREKYNF---PVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional
           regulator [Teredinibacter turnerae T7901]
 gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Teredinibacter turnerae T7901]
          Length = 233

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++++ED E   +L    +ET  Y   +  +G   L L+   + D+II+D+ L  I 
Sbjct: 1   MAENILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I ++++    L   P++ +TA   + D     + G + Y++KP S+      ++  +
Sbjct: 61  GLQICQKLRSAGVL--TPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|171058133|ref|YP_001790482.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775578|gb|ACB33717.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 945

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN++N ++ + L+E  G++     +G EA+     H   +++MD+Q+  + GLE
Sbjct: 819 RLLVVEDNDINREVAQALLEEVGFVVDLAEDGAEAVAKVASHPYRLVLMDMQMPRMDGLE 878

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++I+     Q +P+IA+TA A   D  R    G + ++SKP+        +  ++
Sbjct: 879 ASQEIRRTRTTQNLPIIAMTANAFSEDRARCLAAGMDDFVSKPVDPEALYAVLLGWL 935


>gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 254

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 94  CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148


>gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L RD +E SG+       G   L+ A +   D+II+D+ L E+ G
Sbjct: 1   MSKILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEEDFDLIILDLMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I +Q++E   ++  P+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FDICRQVRE---IKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLD 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 233

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IVED E  +++    +  + +  L+  N   A    ++++ D+I++D  L  +
Sbjct: 1   MNKPNILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G++  K+I+ +S   EIPV+ +TA   + ++      G + Y++KP S    +  IK  
Sbjct: 61  DGIDFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAI 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630]
 gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13
           [Clostridium difficile]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D++    L    ++   +  +   +G   L+  ++    +II+DI L  ++G
Sbjct: 1   MYKILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPAMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++  +I++   L  +PV+ +TA   + D+    + G + Y++KP  ++ F+  ++  I 
Sbjct: 61  YDVLTEIRK---LNNVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|58581182|ref|YP_200198.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425776|gb|AAW74813.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 777

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++VED+  +  +    +   G+      +G  A++L RQ  PD++++D+ L ++SG+
Sbjct: 552 KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 611

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   I+      + PVI VTA   + ++    + G + Y+ KP S    +  +   +  
Sbjct: 612 EVLSAIR---RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 668

Query: 123 A 123
           +
Sbjct: 669 S 669


>gi|260062752|ref|YP_003195832.1| putative two-component system sensor kinase/response regulator
           fusion protein [Robiginitalea biformata HTCC2501]
 gi|88784320|gb|EAR15490.1| putative two-component system sensor kinase/response regulator
           fusion protein [Robiginitalea biformata HTCC2501]
          Length = 941

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN    +   D +  + Y  L  R+G E L+LA    PD++I D+ +  + G+E+
Sbjct: 696 VLLVEDNPDMRQFICDGLIDA-YRTLTARDGEEGLKLAISRNPDLVITDLMMPRMDGVEM 754

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T+++K   E   IPV+ +TA A   ++    + G + Y++KP         +   I +
Sbjct: 755 TEKLKTRIETSHIPVVMLTARAGMENKLEGLETGADDYLTKPFDTRELRVRVANLIRQ 812


>gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
 gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED +        L+   G+      +G  ALE       D++++D+ L  +SG
Sbjct: 1   MTRVLIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+++       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKRLR---MTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|258515402|ref|YP_003191624.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779107|gb|ACV63001.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 922

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           +K++IV+D+  N+     ++E  G   L   NG E +   R++   D+++MDI + E+ G
Sbjct: 802 RKILIVDDDLRNVFSLTVVLEKHGVKVLFAENGKEGINALRENPDIDLVLMDIMMPEMDG 861

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I++  E + +PVIA+TA AMK D E+    G   YISKP+++   +  I+ ++
Sbjct: 862 YEAMQTIRQIHEYETLPVIALTAKAMKNDREKCIDAGASDYISKPVNVEQLLSLIQVWL 920


>gi|221235483|ref|YP_002517920.1| response regulator receiver protein divK [Caulobacter crescentus
           NA1000]
 gi|1086465|gb|AAA82214.1| cell division response regulator DivK [Caulobacter crescentus CB15]
 gi|220964656|gb|ACL96012.1| response regulator receiver protein divK [Caulobacter crescentus
           NA1000]
          Length = 125

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/122 (70%), Positives = 103/122 (84%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL+E  GY  LQTR G+ AL +AR++KPD+I+MDIQL EIS
Sbjct: 1   MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED +L  IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK+ +
Sbjct: 61  GLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 120

Query: 121 GE 122
             
Sbjct: 121 ER 122


>gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+        D +E SGY  +   +G EAL +  ++ PD+I+ DI + +++
Sbjct: 1   MPLTILVVDDDLGTRLSVSDYLELSGYSVITANDGQEALFMVDEYNPDLIVTDIIMPQMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++ +  + +PVI +TA     +     + GC+ Y+ KP  L      I+  +
Sbjct: 61  GYELVRRVRQQAMFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 120

Query: 121 GEA 123
             +
Sbjct: 121 ERS 123


>gi|309791482|ref|ZP_07685986.1| two-component response regulator [Oscillochloris trichoides DG6]
 gi|308226479|gb|EFO80203.1| two-component response regulator [Oscillochloris trichoides DG6]
          Length = 121

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 70/119 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE+N  +    ++  GY  +   +G + + +A+   PD+I+MD+ L  + G
Sbjct: 1   MSKILLVEDNEMNRDMLSRRLQRKGYEVVIATDGEQGVAMAQSELPDLILMDMSLPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+ IK    +  +P+IA+TA AM GD+E+    GC+ Y +KP+ L   +  I+  +
Sbjct: 61  WQATRMIKAQPTIASVPIIALTAHAMAGDQEKCFAAGCDDYDTKPVDLPRLLAKIEALL 119


>gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 228

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 68  CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|209522684|ref|ZP_03271242.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209496733|gb|EDZ97030.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 398

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L   ++   GY   +  NG  AL+      PD+I++DI + E+ G ++
Sbjct: 13  ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAETPDLILLDIMMPELDGYQV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K +K+D   +EIP+I ++A +   D+      G   YI+KP  +   +  ++  +
Sbjct: 73  AKYLKDDPTTREIPIIFLSALSDTMDKVLAFDVGGVDYITKPFHVQEVLARVRTQL 128


>gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 239

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  KV++V+D+     L    +   G++     NG +A  L  +    ++++D+ L  
Sbjct: 1   MSQQYKVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL I ++++E     +IPV+ +TA   + D     + G + Y+ KP +    +  I+ 
Sbjct: 61  EDGLSICRRLREAGN--QIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRA 118

Query: 119 YIGE 122
            +  
Sbjct: 119 VLRR 122


>gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D      L +      G+      NG +A ++A++ +PDV+I+D+ L    GLE+
Sbjct: 18  VLIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLPGYDGLEV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++++     +++P+I +TA     D       G + Y++KP +    M   +  +  
Sbjct: 78  TRRLRRS---RDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRR 132


>gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D        R  +   GY      NG  ALELAR  +PDV+I+DI L  ++GL
Sbjct: 9   AHILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELARTRRPDVVILDIMLPGMNGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + + +        ++ +TA     D     + G + Y+ KP +L   +  +K  +  
Sbjct: 69  EVCRCLHQTQATPA--ILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRR 126


>gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 240

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++++ED +   K+ +  +E   Y   Q  +G E LE+      D++++D+ + +I
Sbjct: 4   MNKIKILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESEDIDLVLLDLMIPKI 63

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG ++ K+I+  S    +PVI VTA   + D     K G + Y++KP S    M+ IK  
Sbjct: 64  SGEDLIKEIRNKS---NVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|75759827|ref|ZP_00739903.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492685|gb|EAO55825.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E  ++L    +   GY  ++  +G+EAL+L  Q + D+I++D+ +  + G
Sbjct: 5   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPSMDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   QI++   +  +P+I +TA     D  +    G + YI+KP    + +  I+  + 
Sbjct: 65  WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++I+ED        R  +   G+      +G + LE AR+   D++++D+ L  I 
Sbjct: 1   MQQRILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++      ++P+I +TA     D     + G + Y+ KP + +  +  I+  +
Sbjct: 61  GIEVARRLRA---ASDVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|255024504|ref|ZP_05296490.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL J1-208]
          Length = 169

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|254418761|ref|ZP_05032485.1| hypothetical protein BBAL3_1071 [Brevundimonas sp. BAL3]
 gi|196184938|gb|EDX79914.1| hypothetical protein BBAL3_1071 [Brevundimonas sp. BAL3]
          Length = 122

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/121 (71%), Positives = 105/121 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL+++ GY  LQTR G++AL LAR H PD+I+MDIQL EIS
Sbjct: 2   MSKKVLIVEDNELNMKLFHDLLDSQGYETLQTREGLQALALARAHHPDLILMDIQLPEIS 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D EL  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETI++++
Sbjct: 62  GLEVTKWLKDDEELNHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVMHFLETIRQHL 121

Query: 121 G 121
           G
Sbjct: 122 G 122


>gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes]
 gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes]
 gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes]
 gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes]
 gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes]
 gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes]
 gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes]
 gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes]
 gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes]
 gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes]
 gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes]
 gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes]
 gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes]
 gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes]
 gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes]
 gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes]
 gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes]
 gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes]
 gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes]
 gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E+T
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 62  KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116


>gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis]
 gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis]
          Length = 235

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +    L    ++  GY   +  NG++AL+     K D+ I+D+ L ++ 
Sbjct: 1   MNEKILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKMDLAILDVMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       P+I +TA     D+      G + YI+KP +       +K  +
Sbjct: 61  GFHICQKIRERYFY---PIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|330983029|gb|EGH81132.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 124

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   +    D +   GY     ++G+  L LA     D+I++DI L  I G  
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++ED+  ++ PVI +TA     D  +  + G + Y+ KP +LS     I+  +  A
Sbjct: 62  LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120


>gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D    +KL    +   GY  L   +G+EALE+ + HK D+II+D+ + ++ G++
Sbjct: 5   TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKVDLIILDVMMPQMDGIQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I+E++     P+I ++A + + D+      G + Y++KP S    +  IK  +  
Sbjct: 65  ACMKIREEN---NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRR 120


>gi|330501096|ref|YP_004377965.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328915382|gb|AEB56213.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 1160

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +++++V+D+  N+      +E  G      RNG EAL   R+H   D+++MD+ + E+ G
Sbjct: 1036 RRLLLVDDDVRNIFALSSALEQKGASVEVARNGHEALAKLREHDDIDLVLMDVMMPEMDG 1095

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+QI+ +   + +P+IAVTA AMK D+ER R+ G   Y++KPI L      I+ ++ 
Sbjct: 1096 YEATRQIRLEERWKNLPIIAVTAKAMKDDQERCRQVGANDYLAKPIDLDRLFSLIRVWMP 1155

Query: 122  E 122
            +
Sbjct: 1156 K 1156



 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED     ++  DL    GY  L      E LELARQ++PD I++D++L + SGL
Sbjct: 768 RRVLVVEDEVRFARILFDLAHELGYACLVATCADEGLELARQYRPDAILLDMRLPDGSGL 827

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            + +++K+D++ + IPV  V+              G   Y  KP S     E 
Sbjct: 828 SVLQRLKDDAQTRHIPVHVVSVEDQSE---AALHLGAVGYALKPTSRDQLKEV 877



 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 43/91 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++VED+ L       LI              EALE  R    D +I+D++L ++ G 
Sbjct: 890 KRVLLVEDDPLQRDSVARLIGDEDIEITAVALAGEALEKLRTTVFDCMIIDLKLPDMQGN 949

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ +++ E+      PVI  T   +  DEE 
Sbjct: 950 ELLRRMAEEDICSFPPVIVYTGRNLTRDEEA 980


>gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
 gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED +  + L    +  +G+  ++  NG++ L LA++ KP ++++D+ L  + G E
Sbjct: 5   TILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLAKEKKPALLVLDLMLPGLEGQE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K+  + + IPV+ +TA A + D     + G + Y++KP S    +  ++  +  
Sbjct: 65  VCRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRR 123


>gi|294679014|ref|YP_003579629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
 gi|294477834|gb|ADE87222.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 64/110 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++ +  +E  G+  +   NG EAL   R+ KPD++++D  L  +SG+EI
Sbjct: 9   VLVVEDESAQREVLQYNLEAEGFRVVMAVNGDEALLFLREEKPDLVVLDWMLPNVSGIEI 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            +++K + E + IP+I ++A + + D  R  + G + Y+ KP S+   M 
Sbjct: 69  CRRVKANPETRSIPIIMLSARSEESDRVRGLETGADDYVVKPYSVVELMA 118


>gi|239908139|ref|YP_002954880.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798005|dbj|BAH76994.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 807

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 71/116 (61%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N ++ R+ +E+ G       NG EA+E+ R    DV++MD+Q+  + GL  
Sbjct: 315 VLLVEDNAINQQVARETLESLGAAVDVAINGREAVEMVRSSLYDVVLMDVQMPVMDGLAA 374

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+ I++     E+P++A+TA A+  D ER  + G   Y++KP+ +   + ++ ++I
Sbjct: 375 TRAIRQLPGTAELPIVALTAHALAEDRERCLEAGMNDYLTKPLEVDRLLASLGQWI 430



 Score =  115 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 12/126 (9%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-----DVIIMDIQLQE 58
           +V++V+D +LN  +F  ++ + G+  +   NG +A       KP     D+I+MDI++ E
Sbjct: 586 RVLLVDDAKLNRAIFSQILRSGGHEVVTAENGKDACRRLFGQKPDGRPFDLILMDIEMPE 645

Query: 59  ISGLEITKQIKED-------SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           + G    + I+              +P++A+T+   K +  R  + G +A + K      
Sbjct: 646 MDGPTAARTIRRLLAASVAPPCAPGVPIVALTSHDCKDEAARCLEAGMDACLHKVFEQGE 705

Query: 112 FMETIK 117
            +  ++
Sbjct: 706 LLAILQ 711


>gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS]
 gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS]
          Length = 233

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 66/118 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +L    ++++G++ +   +G EA    ++ +PDV+++D  L ++SG+ +
Sbjct: 8   ILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQRFRPDVVLLDWMLPDLSGMRL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+E  E++ +PVI +TA  ++ D+      G + YI+KP S    +  I   +  
Sbjct: 68  LSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR 125


>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 232

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+D    ++L    +   G+      NG E L+ AR  +PD +I+D+ +  + G  
Sbjct: 8   RVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMMPGMDGFG 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ D    + PV+ +TA     D+      G + Y++KP SL   +  ++  +  A
Sbjct: 68  MLRRLRADGV--DAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA 125


>gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 239

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           MI +DN+  + + +  +   G+  +   +G  A+ +  ++ P +I++D+ + +  G E+ 
Sbjct: 1   MIADDNDGIVDILKTYVSKEGFTPIIAYDGESAVNMFNEYSPLLILLDVMMPKKDGFEVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I++      +P+I VTA     D       G + YI KP S    M  I+  +  
Sbjct: 61  QEIRK---TSNVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRR 114


>gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    + + GY   +  N  E L +  +++  ++++DI +  + GL++
Sbjct: 7   ILVVDDEKEIADLVEIYLVSDGYKVYKANNAEEGLGVLEKNQIHLVLLDIMMPGMDGLQM 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+E      IP+I ++A +   D+      G + Y++KP +       +K  +  
Sbjct: 67  CKKIRE---TNNIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQLRR 121


>gi|299535842|ref|ZP_07049163.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           fusiformis ZC1]
 gi|298729042|gb|EFI69596.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           fusiformis ZC1]
          Length = 235

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     L +  + T+ Y     R+G  AL+ A   KPDV I+D+ L +I 
Sbjct: 1   MSKRILVVEDDVAIANLIKMTLATNHYEFDIARDGNSALQKALTIKPDVFILDLGLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+      + P+I V+A   + D+      G + Y++KP S+   +  I+  +
Sbjct: 61  GVELITKIRS---WNQTPIIVVSARGEEHDKINALDAGADDYVTKPFSVEELLARIRVAL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED+    +L RD ++ +G+ A   ++G++ L+ A     DVII+D+ L    G
Sbjct: 1   MKRILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++I+E     ++PV+ V+A     ++ R  + G + Y++KP S    +  IK +I 
Sbjct: 61  YEIIREIREKL---DVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
 gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
          Length = 236

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IV+D  +        I   GY      +G EALE+ R++    +I+D+ L  ++G 
Sbjct: 7   KNVLIVDDETMICDSVSAYITKQGYHVFTAGDGKEALEIFRKYPIMFVILDLMLPGMTGE 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + I+  S    +PVI +TA   + D       G + Y++KP S+      ++  +  
Sbjct: 67  EICQAIRRQSR---VPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRR 123


>gi|170703741|ref|ZP_02894459.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170131352|gb|EDS99961.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 241

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437]
          Length = 226

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 4/118 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    + + RD +E  GY  L   +G    +L  + KPD+I++DI +  + G+++
Sbjct: 5   ILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLLNR-KPDLILLDIMMPGLDGIQV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I+   +    P++ ++A     D       G + YI+KP SL   +  +  ++  
Sbjct: 64  CRWIR---DSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRR 118


>gi|298479786|ref|ZP_06997986.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298274176|gb|EFI15737.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1342

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDNE   +L   L     Y   + ++G E  E  ++ +PD+++ DI + ++SG+E
Sbjct: 1092 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1150

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + IK + E   IPVI +TA   +    +  K G + YI+KP ++          +
Sbjct: 1151 MCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLV 1207


>gi|294805707|ref|ZP_06764586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|294447030|gb|EFG15618.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1333

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDNE   +L   L     Y   + ++G E  E  ++ +PD+++ DI + ++SG+E
Sbjct: 1083 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1141

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + IK + E   IPVI +TA   +    +  K G + YI+KP ++          +
Sbjct: 1142 MCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLV 1198


>gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
 gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
          Length = 238

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++VED++    L R  ++  GY  +   +G +AL    +   D +I+D+ L  + 
Sbjct: 1   MAKTILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI ++I++    + +PVI ++A   +       + G + Y++KP SL   +  +K   
Sbjct: 61  GLEICRRIRQM--TRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALF 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|237714770|ref|ZP_04545251.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262406954|ref|ZP_06083503.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229445095|gb|EEO50886.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262355657|gb|EEZ04748.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1342

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDNE   +L   L     Y   + ++G E  E  ++ +PD+++ DI + ++SG+E
Sbjct: 1092 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1150

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + IK + E   IPVI +TA   +    +  K G + YI+KP ++          +
Sbjct: 1151 MCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLV 1207


>gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +  +   +D  E  GY  +   NG EA+E   +   D+I++DI +  I 
Sbjct: 1   MQEKILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I+   +    P+I ++A   + D+ +    G + YI KP S+      ++ ++
Sbjct: 60  GFQVCQNIR---DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component
            complex [Leptospira borgpetersenii serovar Hardjo-bovis
            JB197]
 gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component
            complex [Leptospira borgpetersenii serovar Hardjo-bovis
            JB197]
          Length = 1231

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
            K++M+V+D+  N+     ++   G   L+  NG  ALEL  +    D+I+MD+ + E+ G
Sbjct: 1111 KRIMLVDDDMRNVFALSKILSEKGMEVLKAENGNNALELLSKSENVDMILMDVMMPEMDG 1170

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T++I+ + + ++  +IA+TA AM  D ++    G   YISKP+ +      ++ ++ 
Sbjct: 1171 YEATRRIRSNLKYKDTVIIALTAKAMNDDRQKCIDAGANDYISKPVDVERLFSLMRVWLS 1230

Query: 122  E 122
             
Sbjct: 1231 R 1231



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 4   KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++ IVED+     +        G+  +    G + L LAR+HKP  I++D+ L  + G 
Sbjct: 843 KILLIVEDDLKFASILLKQANEKGFRGISAATGEDGLVLARKHKPHAILLDLDLPGMDGH 902

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
            +  ++K D  ++ IPV  ++A        ++ + G   YI KP++          I+ +
Sbjct: 903 AVLNELKADQSVRHIPVHIISAK---EYSLKLIRDGAVEYIKKPVNKKQLDEAFNRIEHF 959

Query: 120 IGE 122
           I  
Sbjct: 960 ISR 962



 Score = 80.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 50/92 (54%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K ++I+ED+  +    R LI        +  +G EAL +  ++  D I++DI L ++SG
Sbjct: 964  MKNLLIIEDDANSRSTTRKLIGNDDVKCFEASSGKEALSVYSENHFDCIVLDIGLPDMSG 1023

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
             ++ +++++  E Q  P+I  T   +  +E +
Sbjct: 1024 FDLIREMEKIKEKQIPPIIIYTGRELTKEESK 1055


>gi|115359360|ref|YP_776498.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|170698563|ref|ZP_02889632.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171317335|ref|ZP_02906530.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172064153|ref|YP_001811804.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115284648|gb|ABI90164.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|170136497|gb|EDT04756.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171097476|gb|EDT42315.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171996670|gb|ACB67588.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 246

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E   +     PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLEDGAPDLIVLDLMLPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + + +PV+ +TA   + D     + G + Y++KP ++   +  I+  +  A
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124


>gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
 gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
          Length = 2013

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E +G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1893 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1952

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  ++K++ 
Sbjct: 1953 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLR 2011


>gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11]
 gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
 gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
          Length = 224

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +    +    ++ + +      +G EALE       D+II+DI L +++G E
Sbjct: 2   KILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++ +    E PV+ +TA     D+ +    G + Y+ KP      +  I+  +  
Sbjct: 62  VVKNLRTNKN--ETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR 118


>gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
 gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++IVED+     L R+ ++  GY      +GMEA+ L      D+I++DI L +I G
Sbjct: 1   MQHILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALFSSAHFDLILLDIMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++ S+   +P+I +TA   + ++ R      + YI+KP S+ I +  I   + 
Sbjct: 61  FTVCELIRKQSQ---VPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 301

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+I++D   N+ +  D++  +G+      +G  ALE     KPD+I++D+ +  + 
Sbjct: 1   MTKTVLIIDDVPANVGVLLDVLAAAGFEVAVAESGQSALEQLAWLKPDIILLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  +++K      ++PV+ +TA     D+ +    G   Y++KP+     +  +  ++
Sbjct: 61  GFETCRRLKAREATADVPVLFMTALTEVVDKVKGFAAGAVDYLAKPLHPEEVLARVNAHL 120


>gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++  ++  +  +   GY    + NG EAL+  R  + ++I+MDI + ++ 
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    K IK+   L  IP+I +TA   + D+ +    GC+ YI+KP  L      +   +
Sbjct: 61  GFGAIKGIKK---LTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|17231163|ref|NP_487711.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132804|dbj|BAB75370.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 407

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 65/119 (54%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+  N+ L + ++E  GY      NG+ AL   +    D++++D+ +  + G E
Sbjct: 24  KILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGMDGYE 83

Query: 64  ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++++ + +L + IP++ +TA     +       G + +I KP+++   +  ++  + 
Sbjct: 84  VTRRVRGEMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 141


>gi|302871492|ref|YP_003840128.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574351|gb|ADL42142.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 234

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V +V+D +  ++L  + +   GY      +G   L    + +PD++I+DI L +I G E
Sbjct: 5   TVYVVDDEKDILELVSEYLTQKGYAVRTFESGESFLGEFEKSEPDIVILDIMLPDIDGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+I+++S   ++P+I ++A   + D+    + G + YISKP SLS     IKK +  
Sbjct: 65  ICKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120


>gi|254883001|ref|ZP_05255711.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319641845|ref|ZP_07996522.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_40A]
 gi|254835794|gb|EET16103.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317386518|gb|EFV67420.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_40A]
          Length = 1319

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN+  +   R L+    Y      NG EAL+L  +  PD++I D+ +  + G+E
Sbjct: 1069 HILVVDDNQDLLNYLRMLLAPR-YQITCASNGKEALDLLSELMPDLVISDVMMPVMDGME 1127

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++     +PV+ +TA    GD     + G + Y++KP S  I    I   +
Sbjct: 1128 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLL 1184


>gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 226

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +    L    +  +G+      +G   L  AR   PD++++D+ L +ISG
Sbjct: 1   MARILIIEDEQDLAGLIEYNLRAAGFDPEVANSGAGGLAKARTRLPDLVLLDLMLPDISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +K D  L+  PV+ V+A   + D  +  + G + Y+ KP S+   M  +K  + 
Sbjct: 61  HEVLRMLKNDPGLRAAPVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 241

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 7/126 (5%)

Query: 1   MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M+K     V++VED+E    L    +E   Y      NG +A+ LA  + PD+I+MD+ L
Sbjct: 1   MMKGTKPNVLVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAIMLAAANNPDIILMDLGL 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            ++ G+E+ ++I+       +P+I ++A + + D+      G + Y++KP S+      +
Sbjct: 61  PDMDGIEVIRKIRS---WSVVPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARL 117

Query: 117 KKYIGE 122
           +  I  
Sbjct: 118 RATIRR 123


>gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IVED+ +      +L++  G +   T NG+EAL L      D++++D+ L  + GLE
Sbjct: 2   KVLIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASPFDLVLLDLNLPGLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     Q + V+ +TA     D     + G + Y+ KP   ++    I+  +  A
Sbjct: 62  VCRRLRRMPGNQPL-VLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALLRRA 120


>gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 217

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED E   K+ +  +E  G+   +  +G EA+E  +     V+I+D+ L +  G  
Sbjct: 2   KILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++     + PVI +TA     D+    + G + Y+ KP+S    +  +K  +  
Sbjct: 62  VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117


>gi|307727152|ref|YP_003910365.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307587677|gb|ADN61074.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 246

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L    +E +G       NG +      Q  PD+I++D+ +    GL 
Sbjct: 6   HVLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQMRAALEQGTPDLIVLDLMMPGEDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   + + +PV+ +TA   + D     + G + Y+ KP ++   +  I+  +  A
Sbjct: 66  LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124


>gi|114707398|ref|ZP_01440295.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Fulvimarina pelagi HTCC2506]
 gi|114537279|gb|EAU40406.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Fulvimarina pelagi HTCC2506]
          Length = 454

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D+ +N+KL    +    +  +Q  NG EAL + R    D+++ D+ + E+ 
Sbjct: 1   MSGRILIVDDSAINLKLLEARLTAEYFDVVQASNGEEALAICRSEPLDLVLSDVMMPEVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + +K D     +PV+ +TA     D  R  + G + +++KP+        ++   
Sbjct: 61  GFELCRALKSDPRTTHLPVVLITALDQPSDRVRGLEAGADDFLTKPVRDLPLFSRVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG--- 61
           +++V D+          ++T G    +  +   A    ++ +  V++  + L   +G   
Sbjct: 156 IVVVSDHARLQARIARSLQTIG-SVREFADYDTAFAAVQKRQ--VMLTVVDLVGGNGTDP 212

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +    + +   + + +P+IA+TA        +  + G   Y+ +P+  +  +   +  + 
Sbjct: 213 IRFLARCRASEKSRGMPIIAITAADDDRTAAKALEIGAYDYVQRPVDCNELVARSRTQLA 272

Query: 122 E 122
            
Sbjct: 273 R 273


>gi|6513589|gb|AAF14690.1|AF051940_1 response regulator [Brucella abortus]
          Length = 123

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 91/123 (73%), Positives = 109/123 (88%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K VMIVEDNELNMKLFRDLIE SGY  ++TR+G+EAL+LAR+H PD+I+MDIQL E+S
Sbjct: 1   MTKSVMIVEDNELNMKLFRDLIEASGYETIRTRSGLEALDLAREHHPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D EL+ IPVIAVTAFAMKGDE RIR+GGCEAYISKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKDDEELRHIPVIAVTAFAMKGDERRIRQGGCEAYISKPISVPRFIETIKSYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|226943663|ref|YP_002798736.1| membrane sensor hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
 gi|226718590|gb|ACO77761.1| membrane sensor hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
          Length = 772

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 63/118 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VEDN +N  + + ++   GY      +G EAL        D+I+MD  +  + G 
Sbjct: 648 RQVLLVEDNPVNQMVAKGMLAKLGYEVAIAPHGAEALSYLEHGPVDLILMDCNMPVMDGY 707

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E +++I++D    E+P+IA+TA  +  + ER R  G   Y++KP+        +  ++
Sbjct: 708 ETSRRIRQDGRWSELPIIALTANVLPEERERCRTAGMNDYLAKPLRREDLANMLHTWL 765


>gi|330997764|ref|ZP_08321599.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
 gi|329569652|gb|EGG51417.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
          Length = 1320

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN+             GY  +   NG E    A++  PD+I+ DI + E+ G+ +
Sbjct: 1070 VLVVEDNDDIRDYVASSF-DEGYRVVTAMNGREGWREAQRLVPDIIVSDIMMPEMDGIGL 1128

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++KED     IPVI +TA     D+E     G ++Y++KP S ++    ++  +
Sbjct: 1129 CRRVKEDVRTSHIPVILLTAKDSIRDKEEGYDSGADSYLTKPFSATLLNSRVRNLL 1184


>gi|329957277|ref|ZP_08297797.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522990|gb|EGF50093.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1363

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN+         +    +  L+  NG EALE  + ++ D+II D+ +  + G++
Sbjct: 1114 TILIVEDNQEIRHYLSSGLAGL-FNTLEAGNGEEALEKLKDNEVDIIITDVMMPVMDGIK 1172

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K IK++     IPVI ++A     D+    + G + YISKP ++++    I+  + 
Sbjct: 1173 LCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFAITVLTSKIQNMMR 1230


>gi|296156476|ref|ZP_06839314.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295893075|gb|EFG72855.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 246

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L    +E +G       NG +      Q  PD+I++D+ +    GL 
Sbjct: 6   HVLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   + + +PV+ +TA   + D     + G + Y+ KP ++   +  I+  +  A
Sbjct: 66  LCRELRA-GKFRSVPVVMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRRA 124


>gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1]
 gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1]
          Length = 224

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED +   K  ++++   GY    + +G   LE       D+II+DI L EI+G
Sbjct: 1   MAKILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPYDLIILDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I K I+E+  L   PV+ ++A     D  +    G + Y+SKP S++  +  +K  + 
Sbjct: 61  YNILKHIRENKIL--TPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|295690170|ref|YP_003593863.1| response regulator receiver protein [Caulobacter segnis ATCC 21756]
 gi|295432073|gb|ADG11245.1| response regulator receiver protein [Caulobacter segnis ATCC 21756]
          Length = 125

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/122 (71%), Positives = 102/122 (83%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL+E  GY  LQTR G+ AL +AR +KPD+I+MDIQL EIS
Sbjct: 1   MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARDNKPDLILMDIQLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED EL  IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK+ +
Sbjct: 61  GLEVTKWLKEDEELAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 120

Query: 121 GE 122
             
Sbjct: 121 ER 122


>gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 224

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D+    +L    +E  G+   +  +G++AL    + K D++I+DI +  + G
Sbjct: 1   MPKILIVDDDPHIRELVAVFLEREGFQTYEAIDGIDALGKIAEVKIDMVILDIMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+  +++      +IP++ +TA      + +  + G + Y+ KP      +  +K  + 
Sbjct: 61  WELCYELR---RYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|169829139|ref|YP_001699297.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           sphaericus C3-41]
 gi|168993627|gb|ACA41167.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           sphaericus C3-41]
          Length = 234

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     L +  + T  Y     ++G  AL+ A   KPDV I+D+ L +I 
Sbjct: 1   MNKRILVVEDDVAIANLIKMTLATQHYEFDIAQDGNSALQKAITMKPDVYILDLGLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+      + P+I V+A   + D+      G + Y++KP S+   +  I+  +
Sbjct: 61  GVELITKIRS---WTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVAL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|134287657|ref|YP_001109823.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134132307|gb|ABO60042.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 312

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+    D ++  GY+ +   +G +AL+   +  PDV+++D  + ++ G E 
Sbjct: 2   ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +IK+D   + +PVI +TA           + G   Y++KP+        I  ++  +
Sbjct: 62  CLRIKKDGRHEHLPVIFMTALTESEHVVHGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120


>gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component
            complex [Leptospira borgpetersenii serovar Hardjo-bovis
            L550]
 gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component
            complex [Leptospira borgpetersenii serovar Hardjo-bovis
            L550]
          Length = 1252

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
            K++M+V+D+  N+     ++   G   L+  NG  ALEL  +    D+I+MD+ + E+ G
Sbjct: 1132 KRIMLVDDDMRNVFALSKILSEKGMEVLKAENGNNALELLSKSENVDMILMDVMMPEMDG 1191

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T++I+ + + ++  +IA+TA AM  D ++    G   YISKP+ +      ++ ++ 
Sbjct: 1192 YEATRRIRSNLKYKDTVIIALTAKAMNDDRQKCIDAGANDYISKPVDVERLFSLMRVWLS 1251

Query: 122  E 122
             
Sbjct: 1252 R 1252



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 4   KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++ IVED+     +        G+  +    G + L LAR+HKP  I++D+ L  + G 
Sbjct: 864 KILLIVEDDLKFASILLKQANEKGFRGISAATGEDGLVLARKHKPHAILLDLDLPGMDGH 923

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
            +  ++K D  ++ IPV  ++A        ++ + G   YI KP++          I+ +
Sbjct: 924 AVLNELKADQSVRHIPVHIISAK---EYSLKLIRDGAVEYIKKPVNKKQLDEAFNRIEHF 980

Query: 120 IGE 122
           I  
Sbjct: 981 ISR 983



 Score = 80.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 50/92 (54%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K ++I+ED+  +    R LI        +  +G EAL +  ++  D I++DI L ++SG
Sbjct: 985  MKNLLIIEDDANSRSTTRKLIGNDDVKCFEASSGKEALSVYSENHFDCIVLDIGLPDMSG 1044

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
             ++ +++++  E Q  P+I  T   +  +E +
Sbjct: 1045 FDLIREMEKIKEKQIPPIIIYTGRELTKEESK 1076


>gi|77919324|ref|YP_357139.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545407|gb|ABA88969.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED E  ++   D +   G+     +NG+  L LA   + D+II+DI L  + GL 
Sbjct: 2   RILIVEDQEDILQNIADYLHLHGFTVDCAQNGLGGLHLAVTLEFDLIILDIMLPGMDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++++++ +Q  PVI +TA     D+    K G + Y+ KP SL      ++  +  +
Sbjct: 62  LCRKLRKEAGVQ-TPVIFLTARDKLEDKLAGFKAGSDDYLVKPFSLPELHARVEAVLRRS 120


>gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 239

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60
           ++K++++ED E      R  ++ +G+ A++  +G EALE   Q  P  V ++D+ L  I 
Sbjct: 1   MQKILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + +KE      + +I +TA   + D+      G + Y+ KP S    +  I   I
Sbjct: 61  GFEVCRILKE--RYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALI 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|294777730|ref|ZP_06743178.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448409|gb|EFG16961.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1350

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KV++VED+E   +     + +  Y  L++ NG EALE      PD++I D+ + E+ GL 
Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++IK++  L  IPVI +TA   + D     + G +AY++KP  + I  +T    I 
Sbjct: 1150 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1207


>gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 233

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59
           +K+++I ED +   +     ++ +GY  +    G +AL+         DV+++DI +  I
Sbjct: 1   MKRILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+I+E S    I +I +TA   + D+      G + YI+KP S S     +   
Sbjct: 61  DGFTVCKKIREKSST--IGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAI 118

Query: 120 IGE 122
              
Sbjct: 119 YRR 121


>gi|265752154|ref|ZP_06087947.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263236946|gb|EEZ22416.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1349

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KV++VED+E   +     + +  Y  L++ NG EALE      PD++I D+ + E+ GL 
Sbjct: 1090 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1148

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++IK++  L  IPVI +TA   + D     + G +AY++KP  + I  +T    I 
Sbjct: 1149 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1206


>gi|237726641|ref|ZP_04557122.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435167|gb|EEO45244.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1350

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KV++VED+E   +     + +  Y  L++ NG EALE      PD++I D+ + E+ GL 
Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++IK++  L  IPVI +TA   + D     + G +AY++KP  + I  +T    I 
Sbjct: 1150 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1207


>gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G E L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
 gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
          Length = 228

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED E    L +  +E +GY      +G   L L +QH   ++I D+ L ++ G
Sbjct: 1   MNTILIIEDEERVAGLLKAGLEENGYQTWVAYDGAMGLRLFKQHTFQLVISDVILPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++ +    +P++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELCKEIRKIN--PSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|220909137|ref|YP_002484448.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865748|gb|ACL46087.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1954

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV+IV+D+  N+     ++E          NG E ++  +     D+++MDI + E+ G
Sbjct: 1834 KKVLIVDDDMRNIFALTSILEQQQMQVYYAENGREGIQKLQSEPEIDIVLMDIMMPEMDG 1893

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  + I++     ++P++A+TA AM+GD E+    G   YI+KPI        ++ ++ 
Sbjct: 1894 YDTMRAIRQQPHFAQLPIVAITAKAMQGDREKCLAAGASDYIAKPIETEQLFSLLRVWLA 1953

Query: 122  E 122
            +
Sbjct: 1954 Q 1954



 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+    ++  +L    G+ AL    G   L LA+++ P  I++DI L  + G  + 
Sbjct: 1569 LIIEDDPNFARILVNLARQQGFKALVALRGNTGLALAQKYHPSAIMLDIFLPGLDGWTVL 1628

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             ++K + E + IPV  ++      + +R  K G  AY+ KPI+    +  + + 
Sbjct: 1629 DRLKHNPETRHIPVHILSIN---EERQRSLKQGAIAYLQKPIASEDLLNALSRL 1679



 Score = 78.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 46/86 (53%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IV+ +EL      DL+  +        +G  ALE       D +++++ L +++GL + 
Sbjct: 1691 LIVDADELQRLSLMDLLAGNDLEIETVSSGTAALERLESKHFDCLVLNLVLPDMNGLALI 1750

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDE 91
            ++++++S+ Q +P++  T   +  +E
Sbjct: 1751 ERLRQESQQQHLPIVIYTGQGLTVEE 1776


>gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 254

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 94  CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148


>gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905]
          Length = 230

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  V++ +D++         ++  GY  ++  +G++A++    ++  +II+DI +  +
Sbjct: 1   MTKLTVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLDAIDKLENNEVHLIILDIMMPNM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+  T +I+ +   + IP+I ++A A  GD+      G + Y++KP      +  +K  
Sbjct: 61  DGITATFKIRAE---RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius UCC118]
 gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius UCC118]
 gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741]
          Length = 233

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D +    L +  +E +GY      NG +AL+     K D II+D+ L  I G
Sbjct: 1   MAKVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EITK+I+++       ++ +TA   + D+    + G + Y++KP S    +  +K    
Sbjct: 61  IEITKRIRQEKIT--TYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|20091276|ref|NP_617351.1| response regulator receiver [Methanosarcina acetivorans C2A]
 gi|19916399|gb|AAM05831.1| response regulator receiver [Methanosarcina acetivorans C2A]
          Length = 292

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 66/118 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D + N++L    +    Y  +    G EA +  ++ KPD+I++D+ + E++G E
Sbjct: 16  KVLIVDDKKENVELMEAYLAVEPYDVITAYGGKEAFQKVKEEKPDIILLDVMMPEVNGYE 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + K +K + E Q IPV+ +TA +   D  R  + G + +++KPI+       +K  + 
Sbjct: 76  VCKILKGNPETQFIPVLMLTALSELEDRIRGIEVGADDFLTKPINRLELKTRVKSLLR 133


>gi|331243018|ref|XP_003334153.1| transcriptional activator protein copR [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|309313143|gb|EFP89734.1| transcriptional activator protein copR [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 2152

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+I +DN       + ++    Y  ++  +G +A +LA+ ++PD+++ D+ +  + G E
Sbjct: 1378 TVLIADDNSDMRAFLKSVLSRY-YNVVEAVDGQQAYQLAKLNRPDILVSDVMMPGMDGFE 1436

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K DS+   + VI ++A A           G + Y+ KP      +  +  ++
Sbjct: 1437 LLRRLKADSDTAGMSVILLSARAGSESRIEGLAEGADDYLVKPFEAKELVARVNTHL 1493



 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--------KPDVIIMDIQ 55
             V++VEDN +N+K+ +  +   GY+     +G EAL                D+++MDIQ
Sbjct: 2016 HVLVVEDNTINVKVIKRQLTLKGYMVSVAMDGREALNRLYADASETSELPPIDIVLMDIQ 2075

Query: 56   LQEISGLEITKQIKEDSELQEI----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
            +  ++GLE    ++   +  EI    PVIAVT  A K   E+    G ++   KP  +  
Sbjct: 2076 MPVMNGLEAITHLRAAEKTGEIKKRYPVIAVTGNARKEQTEQCLASGFDSICVKPYKIDD 2135

Query: 112  FMETIKKYI 120
                ++  +
Sbjct: 2136 VQSRMEALL 2144


>gi|309791249|ref|ZP_07685780.1| response regulator receiver modulated diguanylate cyclase
           [Oscillochloris trichoides DG6]
 gi|308226675|gb|EFO80372.1| response regulator receiver modulated diguanylate cyclase
           [Oscillochloris trichoides DG6]
          Length = 321

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++I +D+E   ++   L+ + GY      NG + ++ A+   P ++++D+ + ++ G 
Sbjct: 11  QTILIADDDESIRQVLMILLRSVGYRIELVGNGSDLIQRAQVIMPHLLLIDVMMPDMDGY 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  +Q++ D+    IP I +TA     D       G + Y+ KP +    +  ++  +  
Sbjct: 71  EALRQLRNDTRTAHIPAIMLTARGEPKDLVHGFDSGADDYVIKPFNTVELIARVRSQLRR 130

Query: 123 A 123
           A
Sbjct: 131 A 131


>gi|300869426|ref|ZP_07114011.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300332556|emb|CBN59209.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 377

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 59/117 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N  +   L+    Y      NG +ALE     +PD+I++D+ +  I G+E+
Sbjct: 6   ILIVDDEPDNFDVIETLLSEQDYQLYYAANGHDALEYLDTFEPDLILLDVMMPGIDGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +QIK  S+ Q +P+I VTA   K D       G + +ISKP++       +   + 
Sbjct: 66  CRQIKALSKWQAVPIIMVTALNSKSDLAYCLTAGADDFISKPVNGIELRARVHSMLR 122


>gi|299142472|ref|ZP_07035604.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
 gi|298576194|gb|EFI48068.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
          Length = 1337

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              ++IVEDN+   +L   ++    Y  L   +G E LE+ R   PD+II D+ +  +SG+
Sbjct: 1087 ATILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDEMPDIIISDVLMPNMSGI 1145

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ K IKED  +  IPV+ +TA      E    K G + YI+KP +  + +      I
Sbjct: 1146 ELCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISRCNNLI 1203


>gi|281426053|ref|ZP_06256966.1| two-component system sensor histidine kinase/response regulator
            [Prevotella oris F0302]
 gi|281399946|gb|EFB30777.1| two-component system sensor histidine kinase/response regulator
            [Prevotella oris F0302]
          Length = 1337

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              ++IVEDN+   +L   ++    Y  L   +G E LE+ R   PD+II D+ +  +SG+
Sbjct: 1087 ATILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDEMPDIIISDVLMPNMSGI 1145

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ K IKED  +  IPV+ +TA      E    K G + YI+KP +  + +      I
Sbjct: 1146 ELCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISRCNNLI 1203


>gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
 gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++++ED      + RD +  +GY      +G +A+E  R + PD+I++D+ L    
Sbjct: 1   MTQHILVIEDEFQIAAIHRDYLNAAGYEVTCLDDGTQAVEWIRDNTPDLILLDLMLPVKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I +++++      +P+I VTA   + D     + G + YI KP S    +  ++  +
Sbjct: 61  GHTICQEVRQ---FSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 215

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +M+V+D+   + L +D +E  GY  +   NG EALEL  +  PD+II D+ + +++G
Sbjct: 9   TKHLMLVDDDPNLILLVKDYLEFRGYQVITAENGREALELLEEQIPDLIICDVMMPQMNG 68

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+E+   + +PV+ ++A     D  +    G + YI KP      +  ++  + 
Sbjct: 69  YNLVQHIRENLATEWVPVLFLSAKGQIQDRVKGLNTGADVYIVKPFEPEELVAQVESSLK 128

Query: 122 EA 123
           +A
Sbjct: 129 QA 130


>gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease
           [Bacillus anthracis CI]
 gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 841

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 621 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 680

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 681 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKR 735


>gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    ++L +  ++  G+      +G EAL++AR   PD  I+D+ +  + G  
Sbjct: 9   RVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVMMPRMDGFT 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++ D    + PV+ +TA     D       G + Y++KP SL   +  +K  +  
Sbjct: 69  LLSKLRADGH--DAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRR 125


>gi|298530357|ref|ZP_07017759.1| response regulator receiver protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509731|gb|EFI33635.1| response regulator receiver protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 388

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 71/120 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +MI++D   N+K+ ++++E SGY  +   +G  AL+ A ++ PD+I++DI++ E+ 
Sbjct: 5   MQKTLMIIDDYPENLKVLQEMLEVSGYRVVAFPSGPLALKAADKNPPDLILLDIKMPEMD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K   +L+EIPVI ++A     D+ R    G   YI+KP         +  ++
Sbjct: 65  GFEVCRRLKAHDKLKEIPVIFISALDQVQDKIRAFSQGGADYITKPFHPEEVHARVTSHL 124


>gi|218246085|ref|YP_002371456.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|257059134|ref|YP_003137022.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
 gi|218166563|gb|ACK65300.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|256589300|gb|ACV00187.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
          Length = 122

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L   L+  +G+  +   +G +ALE  ++   D+II+D+ + +++G
Sbjct: 1   MTTILVTDDSTAQRELIAGLLVDNGFSVITAIDGEQALEKVQETLFDLIILDVVMPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  +++KED + Q IPVI  +      D    +K G   YI KP S +  +E +++ +G
Sbjct: 61  FQTCRKLKEDPKTQNIPVILCSTKNTDVDRYWAKKQGANEYIVKPFSPNELIEKVQQLLG 120

Query: 122 EA 123
           +A
Sbjct: 121 QA 122


>gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+D+   +K     ++  GY   +  +G++ALE+AR+ KPD++I+DI L ++ G 
Sbjct: 8   KRILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKPDLMILDIMLPKMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+  Q++       +P + ++A   + D+      G + Y+ KP  LS  +  ++  +  
Sbjct: 68  EVLAQLQS---TGGVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRR 124


>gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
 gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
          Length = 954

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +VM+VED   N KL   L++  G+I ++  NG EALE  R  + DVI+MD+Q+  + GL+
Sbjct: 703 RVMLVEDTAANRKLVTSLLKKRGHIVVEAHNGREALEKFRDDEFDVILMDVQMPIMDGLQ 762

Query: 64  ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T  I++       +  P+IA+TA AM+GD E+    G +AYISKPI +   + T++  
Sbjct: 763 TTAAIRQIEREEGYEPTPIIAMTAHAMQGDREKCLGAGMDAYISKPIDIDDLLATLESL 821



 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59
           V++V+DNE N K+ R+L+ +    A  T +  EA+ L  +        D++++D  +  I
Sbjct: 560 VLVVDDNETNRKILRELLRSWELDAFTTSDAEEAIRLFSEKQKVGDPFDLVLIDALMPGI 619

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETI 116
            G ++ K++  +   +  P++ + A + +    ER       + ++KPI+ S   +++
Sbjct: 620 DGYDLCKRL-GEVAGKTPPIVLMAAPSDRHHFREREEDLPIRSTLAKPITASSLHDSL 676


>gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51]
 gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED ++  ++  D +  +GY AL+  +G +ALEL   +  D++I+DI L ++ G
Sbjct: 5   MNKVLVVEDEDILREVIVDYLVENGYQALEAADGEKALELFLANSVDLVILDIVLPKVDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++I+ +S    IP+I +TA + + D     + G + Y+ KP S  + M  +K+++
Sbjct: 65  WSVCRRIRRNSG---IPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFL 120


>gi|330965367|gb|EGH65627.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 641

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 69/118 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       NG+EA+  A      +I+MD +L  + G 
Sbjct: 513 RSILLVEDNPVNRTVVQAMLHNLGCKVDVAVNGVEAVMKAGAGNYALILMDCRLPVMDGY 572

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A++GD +   + G + Y+ KP   +   + +++++
Sbjct: 573 EATRKIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 630


>gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED+    +  +  +   G+       G E LE     +PDV+++D+ L  +SG
Sbjct: 1   MPRVLIVEDDLDVRRAVQLGLRHQGHEVFAVETGEEGLEQLLPFRPDVVVLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++I++  +   +P+I VTA     D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  LDVCRRIRDRDQ---VPIIMVTARGDDVDVVVGLETGADDYVVKPVQARVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family
           protein [Arthrospira platensis str. Paraca]
          Length = 227

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D           +   GY   +   G++A  LA+ H  D++I+D  L   SGLE
Sbjct: 2   RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I  Q++        P++ +TA     D  +    G + Y+ KP  L   +  ++  +  
Sbjct: 62  ICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E+T
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 62  KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116


>gi|304320054|ref|YP_003853697.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis
           HTCC2503]
 gi|303298957|gb|ADM08556.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis
           HTCC2503]
          Length = 459

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 61/119 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D   N+KL    +    +  +    G EA+ELAR   PD+I++D+ +  I 
Sbjct: 1   MTARVLVVDDLAPNVKLLEAKLRAEYFEVITALGGREAIELARTQSPDIILLDVMMPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  K +KED   + IPV+ VTA   + D     + G + +++KP+        ++  
Sbjct: 61  GFETCKLLKEDPLTRHIPVVMVTALDQRSDRIAGLEAGADDFLTKPVQDLALFARVRNL 119



 Score = 63.6 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 33  RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGD-- 90
            +  E L+  R   PD+I++D+ L+    L +   I+     + +P++A+   A + D  
Sbjct: 186 NDSRELLDRIRTDLPDMIMVDLGLESYDPLRLCSAIRSAEGSRLLPLLAI---ADQEDTR 242

Query: 91  -EERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +    G   Y+ +PI +      ++  +  
Sbjct: 243 RLVKALDIGVNDYLMRPIDVQEMAARVRTQLRR 275


>gi|332662395|ref|YP_004445183.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
            hydrossis DSM 1100]
 gi|332331209|gb|AEE48310.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
            hydrossis DSM 1100]
          Length = 1361

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++++EDN    +    ++    Y      NG EA     Q  PD+I+ DI +  + G 
Sbjct: 1105 ARILLIEDNHDLRQYLTQILAGK-YQVRTLGNGREAQLNLEQWMPDLILSDIMMPLMDGF 1163

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  + +K   +   IP+I +TA A  GD+ R  + G + Y+ KP   +  +  I+  +  
Sbjct: 1164 QFLEWLKSSEKHASIPIIMLTARADLGDKLRALRTGVDDYLVKPFVEAELLARIQNLLQR 1223


>gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K++IVED E   ++     +   Y      +G   +   +Q+  D+I++D+ L ++ G
Sbjct: 3   SQKILIVEDEENIAEVLIAYAKQQNYETEHFNSGKGVVSFVKQNAVDLILLDLMLPDVDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K+I+       +P+I +TA + + D  +  + G + YI KP S    +  IK  + 
Sbjct: 63  IELCKKIRA---FSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
 gi|300075808|gb|ADJ65207.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
          Length = 765

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 72/124 (58%), Gaps = 3/124 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ ED E+N +L R L+   G I  +  NG++A+E  R    D+++MD  +  + G 
Sbjct: 642 ARILMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAIRTGHYDLVLMDCMMPIMDGY 701

Query: 63  EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + T +I+       L   P+IA+TA A++GD +R    G + Y+SKP +    M+T++K+
Sbjct: 702 QATAEIRAHEAARGLPRTPIIALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMQTVEKW 761

Query: 120 IGEA 123
           + ++
Sbjct: 762 LQKS 765


>gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D+E   ++   ++   G+      +G  AL    + +PD++++D+ L  I G+
Sbjct: 4   AKILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGIDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I+++S   ++P++ +TA +   D  R  + G + Y+ KP   +  +  ++  + E
Sbjct: 64  EVCRLIRDES---DVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE 120


>gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V++VED+          +   G+  L   +G   +  A    PD++++D+ L    
Sbjct: 1   MTRRVLVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEGPDLVVLDVMLPGFD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++     + +PV+ +TA   + D       G + Y++KP SL      +   +
Sbjct: 61  GLEVCRRVQAQ---RAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|196229923|ref|ZP_03128787.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196226249|gb|EDY20755.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1947

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 73/122 (59%), Gaps = 3/122 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60
            +KV+IV+D+  N+     ++E      +   NG +A+EL  ++ PD+  ++MDI + E+ 
Sbjct: 1827 RKVLIVDDDARNIFALSIVLENQEMNIISATNGRQAIELI-ENTPDLSMVLMDIMMPEMD 1885

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E  ++I+ ++  + +P++A+TA AMKGD E+  + G   YI+KP++    +  ++ ++
Sbjct: 1886 GYETMRRIRNNARFRSLPILALTAKAMKGDREKCLEAGASDYIAKPVNTDQLLSLLRVWL 1945

Query: 121  GE 122
              
Sbjct: 1946 HR 1947



 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDN+L  +   +L+            G EAL+       D  ++D++L ++SG 
Sbjct: 1681 KRLLVVEDNDLERQSIVELLGHDDIEITTVGTGSEALQELLDKPFDCGVLDLRLPDMSGF 1740

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+  +I+ +S L+++P++  T   +  +EE   K   ++ + K + S    ++
Sbjct: 1741 ELLDRIQAESNLRDVPIVVFTGKELSREEESHLKTVAKSIVLKDVRSPERLLD 1793



 Score = 90.6 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED+    ++   L    G+  L    G  AL LARQ  P  I +DI L ++ G  + 
Sbjct: 1562 LIVEDDPHYARVLLGLARDKGFKGLVAMRGQHALTLARQFLPTAITLDIFLPDMLGWTVL 1621

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
              +K D   + IPV  ++   +  + +     G  +Y+ KP +        E IK +
Sbjct: 1622 NNLKLDPNTRHIPVQIIS---LDEERQHGLSHGAFSYMVKPATTEDLDVAFERIKTF 1675


>gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
 gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
          Length = 1234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/118 (38%), Positives = 77/118 (65%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY      NG  AL++  + K D ++MDIQ+  + GL  
Sbjct: 1112 VLLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMLDKAKYDAVLMDIQMPVMDGLTA 1171

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            TK++++   + E+PVIA+TA AM GD E+    G  A+I+KPI L+   +T+  +IGE
Sbjct: 1172 TKELRKRYPVDELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFDTLSHWIGE 1229



 Score = 98.7 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K ++++DN   ++++  ++    +      +G E L    ++  D++++D  + E+ G+E
Sbjct: 968  KTLVIDDNPTALQIYSSVMRDFHFNVDTAASGPEGLYKLSKNPVDLLLLDWMMPEMDGVE 1027

Query: 64   ITKQIKE---DSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + KQI +   D  L++ P +I +TA+  +  ++ +      A + KP   S   + I
Sbjct: 1028 VIKQIDQMVADGRLEKRPIIIMMTAYTAEPMQKDVEAANVFALLQKPFKASSLFDEI 1084


>gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 63/107 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D E   +L +  +E  GY  L   +G EAL +  + +P+++++DI L  ISGLE+
Sbjct: 4   ILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILEEKQPELVVLDIMLPGISGLEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
             QI++  +  E+PVI +TA   + D+    + G + YI+KP S   
Sbjct: 64  LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 110


>gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 225

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K ++VED+E       + +  + Y      +G E  +       D+I++D+ L +++G+E
Sbjct: 2   KFLLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVMLPKLNGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++      +PV+ +TA     D+      G + Y+ KP  L   +  I+  +  
Sbjct: 62  LCQRLRQ--RGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRR 118


>gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 993

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 76/125 (60%), Gaps = 7/125 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           K+V++V+D E N +L   +++ +G   +   NG EAL++  +     +  ++++MD+Q+ 
Sbjct: 582 KRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDMIAEGNESGYPYELVLMDMQMP 641

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G   T+ ++E  +    PVIA+T  AM+GD E+    GC+ +++KP++L   +E + 
Sbjct: 642 VLDGYSATRLLREREDT--TPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLDELLEMVS 699

Query: 118 KYIGE 122
           +Y+GE
Sbjct: 700 QYLGE 704


>gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
 gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
          Length = 1389

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 56/115 (48%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +DN         L+  +G+  +   +G  AL+  R    D+++ D+ +  + GLE
Sbjct: 632 RVLVADDNADMRGYLTRLLRGAGHTVVAVNDGRAALDALRAEPFDLVVSDVMMPGLDGLE 691

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +   ++ D     +PV+ ++A A +    +  + G + Y+ KP + +  +  ++ 
Sbjct: 692 LVAALRADRRTASVPVLLLSARAGEEASVQGLEAGADDYLVKPFAAADLLARVRA 746


>gi|119490895|ref|ZP_01623178.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Lyngbya sp. PCC 8106]
 gi|119453713|gb|EAW34872.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Lyngbya sp. PCC 8106]
          Length = 379

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D+ +  +L R  ++  GY      NG E +E A+  +P +II D  +  ++G
Sbjct: 1   MFKILVIDDDTVIRELLRRTLKKQGYDVSVASNGEEGIEKAKVLRPALIICDWIMPRLTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +Q+K++ EL       +T+     D  +    G + +ISKP+ ++     ++  + 
Sbjct: 61  IEVCRQVKDNPELSTTQFFLLTSLGSISDRVKGLDAGADDFISKPLEMNELYARVRAGLR 120


>gi|171056736|ref|YP_001789085.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170774181|gb|ACB32320.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 382

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 65/119 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D E N++L  DL+   G+      +G +ALE      PD++++D+ +  +SG 
Sbjct: 15  AHILVVDDVEQNVRLLADLLVFQGWRVSTAMSGEQALERIATDAPDLVLLDVMMPGLSGY 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++ ++++ + +   +P++ VTA     +  +  + G + +ISKPI+    M  ++  + 
Sbjct: 75  DVCRRLRAEPDHALLPIVLVTALDPTAERVKGLEAGADDFISKPINRPELMARVRSLLR 133


>gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +L +D +E SG+      NG   L+   +   D++I+D+ L  I G
Sbjct: 1   MSRILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEEDFDLLILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+++E   ++  P+I V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKKVRE---VKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
 gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
          Length = 230

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|328861007|gb|EGG10111.1| hypothetical protein MELLADRAFT_115552 [Melampsora larici-populina
            98AG31]
          Length = 2085

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++I +DN+      R ++    Y   +  +G+EA   A+ H PD+++ D+ +  ++G E
Sbjct: 1256 TILIADDNDDMRSFVRSVLSRY-YTVAEASDGLEAYHWAKAHHPDLVVSDVMMPALNGFE 1314

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K++K D +   I VI ++A A           G + Y+ KP      +  I  ++
Sbjct: 1315 LLKRLKTDPDTAGISVILLSAHAGSEIRIEGLAEGADDYLVKPFEAKELVARINTHL 1371



 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--------VIIMDIQ 55
             V++VEDN +N+K+ +  +   GY      +G + L++  +            +++MDIQ
Sbjct: 1953 HVLVVEDNLINVKVIKRQLSLKGYSVSVAMDGRQGLDILYEDDQHPSELGRIGIVLMDIQ 2012

Query: 56   LQEISGLEITKQIKEDSELQEI----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
            +  ++GL+   +++   +  ++    PVIAVT  A K   E+    G +    KP  +  
Sbjct: 2013 MPVMNGLDAITELRASEKTGKVKQRYPVIAVTGNARKEQTEQFLASGFDDICVKPYKIED 2072

Query: 112  FMETIKKYI 120
                ++  +
Sbjct: 2073 VQNRMEALL 2081


>gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 222

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D E    + R   E  G   ++  +GMEA++LA+    D+II+DI + E+ G
Sbjct: 1   MYRILMVDDEEKIRAIVRKYAEFEGNEVVEAADGMEAVKLAKSQDFDIIILDIMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+I++    ++ PVI ++A   + D     + G + Y+ KP S    M  +   + 
Sbjct: 61  FSACKEIRK---YKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|301301253|ref|ZP_07207408.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851129|gb|EFK78858.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 223

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D +    L +  +E +GY      NG +AL+     K D II+D+ L  I G
Sbjct: 1   MAKVLVVDDEQAITTLLKYNLEKAGYEVKIVNNGNDALDEGLTGKYDFIILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+TK+I+++       ++ +TA   + D+    + G + Y++KP S    +  +K    
Sbjct: 61  IEVTKRIRQEKIT--TYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59
           ++ V+IV+D++    L    +E  GY  +Q  +G EAL+    +    D++I+D+ + ++
Sbjct: 1   MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G++  ++I+E+S    IP++ ++A +   D+      G + Y+ KP +       +K  
Sbjct: 61  NGIDTCRRIRENS---SIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51]
 gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 2   LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K+   V++V+D E   ++   +++   Y  L   NG  ALE  ++  PD++I+D+ L  
Sbjct: 1   MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G E+ + I+E     ++P++ ++A     D+      G + Y+ KP S       +K 
Sbjct: 61  IDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKA 117

Query: 119 YIGEA 123
            +  +
Sbjct: 118 LLRRS 122


>gi|117925634|ref|YP_866251.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117609390|gb|ABK44845.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 252

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED+E   +L  D +  +G+I     +G +  E   + +PD+++MD+ L    GL 
Sbjct: 13  HILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGEDGLT 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +T+ ++  +    IP+I +TA   + D     + G + Y+ KP +    +  I   +  A
Sbjct: 73  LTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVMRRA 132


>gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 233

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +D+    +L     E  G+      +G +AL   RQ +  + I+D  +  +SG +
Sbjct: 9   TILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQLRQKEFQLAILDWDMPLMSGYD 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++      IP++ VTA     D  +    G + Y+ KP ++   +  ++  +  
Sbjct: 69  VCQRLRDTGNT--IPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRR 125


>gi|295085367|emb|CBK66890.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1263

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+       D+++TS Y      NG +AL + R+  PD++I DI + E+SG 
Sbjct: 999  QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1057

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   IK D E+  IPV+ +TA   + +     + G +AYI+KP S+ I   TIK  +  
Sbjct: 1058 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1117

Query: 122  EA 123
             A
Sbjct: 1118 RA 1119


>gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
 gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
          Length = 230

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E ++   +   D++I+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVQAFFKSSFDLVILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|209527277|ref|ZP_03275787.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492265|gb|EDZ92610.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1051

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 64/118 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N  L   L++  G+   +  NG EA+ + +Q  P +I MD+ +  I G E
Sbjct: 830 RILVVEDNPVNRLLLTTLLQDVGFEVQEAENGQEAIAVWQQWHPHLIFMDMHMPVIDGFE 889

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ IK+        +IA+TA A     +     GC+ +ISKP      +ET+ KY+G
Sbjct: 890 ATQYIKQAEVDSLPVIIAITASAFTEQRQNCINAGCDDFISKPFRREQVLETLTKYLG 947


>gi|56752286|ref|YP_172987.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|24251267|gb|AAN46187.1| unknown protein [Synechococcus elongatus PCC 7942]
 gi|56687245|dbj|BAD80467.1| two-component response regulator [Synechococcus elongatus PCC 6301]
          Length = 126

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE N  +    +   G+  +   +G   ++ AR+ +PD+I+MD+ L  + G
Sbjct: 6   MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+Q+K D ELQ+ PVIA+TA AM  D E+    GC+ Y +KPI L   +  I + + 
Sbjct: 66  WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 125

Query: 122 E 122
            
Sbjct: 126 R 126


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+ LN     +L+    Y      +G  A +  + +  D+I++D+ L ++ G+ 
Sbjct: 2   KILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ ++   ++P++ +T      ++      G + Y+ KP  +   +  I+  +  
Sbjct: 62  LCRKIRSNNL--QMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRR 118



 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L + L+   G  A+   N ++  E      PD++I+D++L  I+G+E
Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ DS   E+P++ +T  +      ++   G + ++SKPI     +  I   +  
Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRIVNRLER 515


>gi|288959193|ref|YP_003449534.1| two-component response regulator, modulated serine phosphatase
           [Azospirillum sp. B510]
 gi|288911501|dbj|BAI72990.1| two-component response regulator, modulated serine phosphatase
           [Azospirillum sp. B510]
          Length = 416

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +V+IV+DN +N  L   L+E  G     Q  +G +AL    + KPD+I++D+ +  + G
Sbjct: 35  ARVLIVDDNRMNRNLLTALLERGGITLIDQAEDGQDALTRMERCKPDLILLDLMMPRMDG 94

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + ++ D   + +PV+  ++     D  R    G   YI+KP+S    +  ++  + 
Sbjct: 95  FEMCRHLRADPRWKSLPVLVQSSLDRPEDRARAFIAGATDYITKPVSAVELLARVRIQLR 154

Query: 122 E 122
           +
Sbjct: 155 K 155


>gi|172037422|ref|YP_001803923.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698876|gb|ACB51857.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 353

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D   N+ L +  +E  G+  +   +G  AL    Q  PD+I++D+ +  + 
Sbjct: 1   MNHYILVVDDIPDNLLLIQLALEQDGHQLVSVNDGFSALAQIDQCPPDLILLDVMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++I+++S L  IP++ +TA   + +  +    G + +I KP+ +      ++  +
Sbjct: 61  GYEVTQKIRQNSRLPYIPILLITAH-EQSNVVKGLDTGADDFIRKPVQIDELQARVRSLL 119

Query: 121 G 121
            
Sbjct: 120 R 120


>gi|52079560|ref|YP_078351.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52784924|ref|YP_090753.1| hypothetical protein BLi01152 [Bacillus licheniformis ATCC 14580]
 gi|319646651|ref|ZP_08000880.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
 gi|52002771|gb|AAU22713.1| Two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52347426|gb|AAU40060.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391239|gb|EFV72037.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
          Length = 224

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D    + L    +E   Y   +   G EAL+L +    D++I+DI + E+ G  +
Sbjct: 3   VLLVDDENRMLDLLELYLEH--YSCTKAATGKEALDLIKMRNFDLVILDIMMPEMDGWTV 60

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+    L  IPVI +TA   + D  R    G + Y++KP S  + +  I+  +  
Sbjct: 61  CKEIR---RLTSIPVIMLTAKNGQDDIVRGLNCGADDYLTKPFSEKVLLAKIEAVLRR 115


>gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +   +L    + + GY   +  N    L++  +    ++++DI +  + GLE+
Sbjct: 6   ILVVDDEKEIAELVEIYLVSDGYKVYKADNAQAGLDILEKETIHLVLLDIMMPGMDGLEM 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+E      IP+I ++A +   D+      G + Y+ KP +       +K  +  
Sbjct: 66  CKKIRE---TNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120


>gi|45934807|gb|AAS79471.1| putative two-component system response regulator [Streptomyces
           bikiniensis]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED+E+  +     +E  GY      +G+  LEL R+ + D++++D+ L  + G+ 
Sbjct: 2   TVLLVEDDEVIRRSVAMSLERYGYRVRVAADGLTGLELFREGRHDLVLLDVMLPGLDGIG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E       P++ ++A     D     + G + Y+ KP+  ++ +  I+  +  A
Sbjct: 62  LCRRIRE---TATDPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRA 118


>gi|315224472|ref|ZP_07866299.1| DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga ochracea F0287]
 gi|314945493|gb|EFS97515.1| DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga ochracea F0287]
          Length = 934

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVEDNE   +  R ++    Y  ++  NG E  E+A++H PDV+I D+ + +  G +
Sbjct: 686 TVLIVEDNEDMRQFIRYILSDD-YNLIEAENGEEGFEVAKKHLPDVVISDVMMPKTDGFD 744

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + IK +     IPVI +TA+A+   ++   + G +AYI+KP ++ +    ++K I
Sbjct: 745 LCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLI 801


>gi|238025638|ref|YP_002909870.1| Two component transcriptional regulator, AraC family protein
           [Burkholderia glumae BGR1]
 gi|237880303|gb|ACR32634.1| Two component transcriptional regulator, AraC family protein
           [Burkholderia glumae BGR1]
          Length = 259

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+  +  L  + +   G+      +G++ L  AR  +PD+I+MDI +    G
Sbjct: 1   MNRVLVVDDHLDDRSLLAEFLRQQGFRVFMASDGLDGLAKARVVRPDLILMDINMPNCDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L   +++K D     +P+I +TA     +     + G   YI+KP         I  ++ 
Sbjct: 61  LTACRKLKCDPATSAVPLIFLTASTQPEERVAGLEAGAIDYIAKPFHFEEVRLRIAIHLR 120


>gi|119486032|ref|ZP_01620094.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119456807|gb|EAW37935.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 440

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   GY   Q  NG  AL   +  KPD+I++DI + E++G  +
Sbjct: 14  ILVVDDTPANLRLLSKMMTEHGYNVRQAINGKMALTAVKAVKPDLILLDINMPEMNGYTV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K++ E   IP+I ++A     D+ +  + G   Y++KP  L   +  I+  +
Sbjct: 74  CETLKKNEETCSIPIIFLSALDDALDKVKAFQVGGVDYVTKPFQLEEILVRIQNQL 129


>gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K+  ++IV+D     +L  D +  + + A+  R+G E  +   +H  D++++D+ L +
Sbjct: 1   MEKRDCILIVDDEPEIRRLLVDYLMRNNFEAVAARDGREMWQALDRHAIDLVVLDLMLPD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL + ++++  S    +PV+ +TA   + D     + G + Y+ KP S    +  IK 
Sbjct: 61  TDGLSLCRELRAKS---NLPVLMLTALGEETDRIVGIEMGADDYLVKPFSPRELLARIKA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 VLRR 121


>gi|262373811|ref|ZP_06067089.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311564|gb|EEY92650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 236

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63
           ++IV+D     ++    ++ +G+  LQ  +  +A ++    +P +I++D  L   +SG++
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K D  L EIPVI +TA   +  + +    G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125


>gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
 gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
          Length = 233

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D+     +   L++  G+      +G+ AL+L  +   D++++D+ +    G
Sbjct: 1   MNHILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q++E + +  +P++ ++A   + D+      G + Y+ KP S +  +  I   + 
Sbjct: 61  LEVCRQLRERAAV--LPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|91789988|ref|YP_550940.1| response regulator receiver protein [Polaromonas sp. JS666]
 gi|91699213|gb|ABE46042.1| response regulator receiver protein [Polaromonas sp. JS666]
          Length = 125

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I +D    +     L++  G+      +G  AL+      PD+I++DI L    
Sbjct: 1   MSKRILIADDEPNIVVSLEFLMKREGFDVQVAVDGEAALQAIAAQVPDLILLDIMLPRKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+ + + Q + V+ +TA     +  +    G +AY++KP S    +  +++ +
Sbjct: 61  GFEVCQQIRANPQWQSVKVVMLTAKGRDTEVSKGLALGADAYMTKPFSTKDLVAQVRQLL 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 233

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    +L    +E +GY       G +  E A+   PD++I+D+ L  + G
Sbjct: 1   MPNILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + ++ DS    +P++ +TA     D+    + G + Y++KP    + +  ++  + 
Sbjct: 61  LQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 213

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+   + L +D +E  GY      NG EAL+L     PD+I+ DI + E+ G  
Sbjct: 9   HLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYA 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +Q++++ ++  IPV+ ++A     +  +    G + Y++KP         ++  + +A
Sbjct: 69  FIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQA 128


>gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +         ++  G   L+  +G+EALE+  +H+  +I++D+ +  + G+  
Sbjct: 6   VLVVDDEKEIRDAIEIYLKNEGITVLKAGDGIEALEMLNEHQVHLIVLDVMMPNLDGISA 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E    + IP+I ++A +   D+    + G + Y++KP +    +  +K  +  
Sbjct: 66  TYKIREK---KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120


>gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 225

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +  SGY  ++  +GMEA+++   Q+   +II+D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFYEQNDIALIILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++  S+   +P+I +TA   + DE +  + G + YISKP S  I +  ++  +  
Sbjct: 65  QVCREVRMHSK---VPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRR 121


>gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1]
          Length = 223

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D +  + L +D +E  GY      NG EA+E A +  PD++++D+ + E  G
Sbjct: 1   MYKILVADDEKDVVSLLKDYLELKGYCVFTANNGAEAIEQASK-SPDLMLLDVNMPEADG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++   +    P++ +TA     D+ +    G + YI KP SL      I  +I 
Sbjct: 60  FEVCRKVR---DHVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHIR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 869

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ ED+E+     R L+E +GY     RNG EAL+L   H  D ++MDIQ+  + G+E
Sbjct: 742 RVLLAEDDEVTQFAVRKLLEKAGYTVSIARNGEEALDLLGAHDFDAVLMDIQMPVMGGIE 801

Query: 64  ITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I+        + IP+IA+TA+AM GD E+    G   YI+KP+ +    + +++ 
Sbjct: 802 ATRLIRSSATPEAKRSIPIIALTAYAMAGDREKFLDAGMNDYIAKPVQVVELKKALERA 860


>gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 239

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+++ED     +L    +   GY      +G   L+ A Q   D+II+DI L  ++
Sbjct: 1   MSHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI  +++++    + P+I +TA   + +  +  K G + YI+KP  ++  +  +   +
Sbjct: 61  GFEILTRLRQNGV--KTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 254

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 94  CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148


>gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes]
 gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes]
 gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E+T
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 62  KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116


>gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 231

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED++    L ++ +  +GY  L+  NG +AL+       D++I+D+ +  +S
Sbjct: 1   MTHRILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQALKFVDDSL-DLVILDVMMPGLS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  +Q++  S    +P++ +TA +   D+      G + Y++KP S       +   +
Sbjct: 60  GIETCQQMRASS---NVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 224

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     K+    ++   Y      NG EAL+     + D++I+DI + E+ GL 
Sbjct: 2   KILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIMMPEMDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++       +PV+ +TA     D+      G + Y+ KP      +  I+  +  +
Sbjct: 62  LVKKLR--DGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRS 119


>gi|256819065|ref|YP_003140344.1| two component transcriptional regulator, AraC family
           [Capnocytophaga ochracea DSM 7271]
 gi|256580648|gb|ACU91783.1| two component transcriptional regulator, AraC family
           [Capnocytophaga ochracea DSM 7271]
          Length = 934

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVEDNE   +  R ++    Y  ++  NG E  E+A++H PDV+I D+ + +  G +
Sbjct: 686 TVLIVEDNEDMRQFIRYILSDD-YNLIEAENGEEGFEVAKKHLPDVVISDVMMPKTDGFD 744

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + IK +     IPVI +TA+A+   ++   + G +AYI+KP ++ +    ++K I
Sbjct: 745 LCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLI 801


>gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
 gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
          Length = 226

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 69/120 (57%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +  +GY  L+ ++G EA++     K  +++++D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSIKGINLLVLDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I++   + ++P+I +TA   + DE    + G + YISKP S  I +  ++  +  
Sbjct: 65  EVVKEIRK---VSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRR 121


>gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 259

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED+     L   L+  +G+     RNG E  +       D++++D+ L   SGL
Sbjct: 25  AHILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPVDLVLLDVMLPGQSGL 84

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + I+  SE   +P+I VTA   + D     + G + Y+ KP S    +  I+  +  
Sbjct: 85  DLCRTIRARSE---VPIIMVTARGEEADRVVGLELGADDYLPKPFSRPELLARIRAVLRR 141

Query: 123 A 123
           A
Sbjct: 142 A 142


>gi|317051354|ref|YP_004112470.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316946438|gb|ADU65914.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 124

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 68/119 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++EDNELN  +    +   GY  +   +G E L  A +H+PD+I+MD+ L  + G
Sbjct: 1   MATILLIEDNELNCDMLTRRLTRKGYEVITAGDGAEGLRKATEHQPDLILMDMSLPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T++I+++     IPV+A+TA A+  D  R  + GC  + +KP+ L   +E I   +
Sbjct: 61  WEATRRIRDNQRTTHIPVLALTAHALPEDRRRAFEVGCSDFETKPVHLPQLLEKIADLL 119


>gi|262373678|ref|ZP_06066956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311431|gb|EEY92517.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 254

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +  +   L ++    +I++D  L    GL 
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +   + P+I +TA     D     + G + Y+ KP + +  +  I+  +  
Sbjct: 82  ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138


>gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +++  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117


>gi|255281904|ref|ZP_05346459.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267577|gb|EET60782.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 224

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D++    L + ++E +GY      NG  AL++  +   D++++DI + ++ G
Sbjct: 1   MFHILVVDDDKHTRMLLQAILEEAGYTVTTADNGETALDVLDKEHIDLVVLDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E TK I+E ++   +P++ VTA     DE++    G + YI+KPI     +  IK  + 
Sbjct: 61  YEFTKTIRETNDA--LPILMVTAKQDAADEKQGFLVGTDDYITKPIDEEKMLLRIKALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
 gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
          Length = 231

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED++    L ++ +  +GY   +  NG +AL+       D++I+D+ +  IS
Sbjct: 1   MTHRILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQALKFVDDSL-DLVILDVMMPGIS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  +Q++  S    +P++ +TA +   D+      G + Y++KP S       +   +
Sbjct: 60  GIETCQQMRASS---NVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1]
 gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1]
          Length = 243

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VEDNE    +        G       +G E  +  ++ + D++I+D  L  + G+ 
Sbjct: 11  KVLVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRYKEGEWDLVILDWMLPGMDGVT 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+E  E  +IP+I +TA   + D+    + G + Y++KP S    M  I+     
Sbjct: 71  ICRKIRE--ERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRR 127


>gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii]
          Length = 226

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D+     L    +E  G+  +   +G  A++ A     D II+D+ L +++
Sbjct: 1   MNNNILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQAFDAIILDVMLPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K I+E  +    PV+ +TA     D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GFEVLKAIREHLQT---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
 gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
          Length = 227

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+ +VED E    L R  +E  GY       G EA    ++  PD++I+D  L  +S
Sbjct: 1   MVPKIAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEAEIRLQERIPDLLILDWMLPGVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++   E + +P+I +TA   + +  R    G + Y+ KP S    M  +K  +
Sbjct: 61  GIELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 223

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED      L RD +    +   +  NG E L +    K D++++DI +  + 
Sbjct: 1   MRKSILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQKIDLVLLDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++E   +  +PV+ +TA   + D+ +    G + YI+KP S  + +  +K  +
Sbjct: 61  GLTMLEKLRE---VSTVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|148546933|ref|YP_001267035.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida F1]
 gi|148510991|gb|ABQ77851.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida F1]
          Length = 643

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 68/116 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N  +   ++ + G       +G+EA+E   + +   ++MD +L  + G E 
Sbjct: 517 VLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVERVGRQRFAAVLMDCRLPHLDGYEA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++I++      +P+IA+TA A++GD ER    G + Y+SKP+  +   + +++++
Sbjct: 577 TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQQVLQRWL 632


>gi|295085550|emb|CBK67073.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1350

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +M+V+DN   +     ++    Y  +   +G EAL++  ++  D+II D+ ++E+ G E+
Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1145

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
              +IK +  +  +PVI +TA      + +  + G +AYI KP S       +   +   E
Sbjct: 1146 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKRE 1205

Query: 123  A 123
            +
Sbjct: 1206 S 1206


>gi|323528571|ref|YP_004230723.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323385573|gb|ADX57663.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 246

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L    +E +G       NG +      Q  PD+I++D+ +    GL 
Sbjct: 6   HVLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   + + +PV+ +TA   + D     + G + Y+ KP ++   +  I+  +  A
Sbjct: 66  LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124


>gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D     +L    +  SG+  +   +G EA+  A + +PD++++D+ L ++ G 
Sbjct: 9   ARLLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAERIRPDLVVLDVMLPDMDGF 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  +++E     ++PV+ +TA     D+    +   + Y++KP SL   +  I+  +  
Sbjct: 69  AVAGRLREMGG--QMPVVFLTARDATDDKVAGLRV-ADDYVTKPFSLEEVLARIRAVLRR 125


>gi|262406003|ref|ZP_06082553.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294806907|ref|ZP_06765732.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|262356878|gb|EEZ05968.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294445936|gb|EFG14578.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1342

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +M+V+DN   +     ++    Y  +   +G EAL++  ++  D+II D+ ++E+ G E+
Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1145

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
              +IK +  +  +PVI +TA      + +  + G +AYI KP S       +   +   E
Sbjct: 1146 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKRE 1205

Query: 123  A 123
            +
Sbjct: 1206 S 1206


>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 241

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D E   +L    ++  GY      +G  A++  R  KPD +I+D+ +  + G 
Sbjct: 14  AKILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMPGMDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    E P + ++A     D+      G + Y++KP SL   +  ++  +  
Sbjct: 74  GLLRRLRADGI--EAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRR 131

Query: 123 A 123
           +
Sbjct: 132 S 132


>gi|237718991|ref|ZP_04549472.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451769|gb|EEO57560.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1342

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +M+V+DN   +     ++    Y  +   +G EAL++  ++  D+II D+ ++E+ G E+
Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1145

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
              +IK +  +  +PVI +TA      + +  + G +AYI KP S       +   +   E
Sbjct: 1146 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKRE 1205

Query: 123  A 123
            +
Sbjct: 1206 S 1206


>gi|237717236|ref|ZP_04547717.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229443219|gb|EEO49010.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1337

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +M+V+DN   +     ++    Y  +   +G EAL++  ++  D+II D+ ++E+ G E+
Sbjct: 1082 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1140

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
              +IK +  +  +PVI +TA      + +  + G +AYI KP S       +   +   E
Sbjct: 1141 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKRE 1200

Query: 123  A 123
            +
Sbjct: 1201 S 1201


>gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 778

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 3/123 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED+  N    R L+E SG+      NG EAL+L R    D+++MDIQ+  + G E
Sbjct: 649 HVLMVEDDPSNQVATRKLLEKSGHAVTLAENGQEALDLLRTGDFDIVLMDIQMPVMGGQE 708

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK+I+    L   + IPVIA+TA+AM GD E+    G + Y+ KP+SL      I+K+ 
Sbjct: 709 ATKEIRNSPGLAACKSIPVIALTAYAMTGDREKFLASGMDDYLVKPVSLENLQRMIEKHA 768

Query: 121 GEA 123
             A
Sbjct: 769 PRA 771


>gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
 gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
          Length = 232

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +    L    ++   Y   +  + ++AL    +   D+ I+D+ +  + 
Sbjct: 1   MKTKILVVDDEKEIADLVELYLKNENYEIYKFYDPLQALACIEEQPVDLAILDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  +  +I++       PV+ +TA     D+      G + YI+KP      +  +K  +
Sbjct: 61  GFALCAKIRDKYTF---PVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
 gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
          Length = 231

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   GY  L+  +GMEA++   + K   +II+D+ + ++ G 
Sbjct: 11  KILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDKDIALIILDVMMPKMDGW 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S+   +P+I +TA + + DE +    G + YISKP S  I +  ++  +  
Sbjct: 71  QVCREIRMHSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 127


>gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 890

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 71/118 (60%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDNELN ++  +L+   G       NG  AL++A Q   D+I+MD+Q+  + GL 
Sbjct: 549 RILLAEDNELNQQVAMELLRAVGADVSIAGNGAIALQMAAQQPYDLILMDMQMPVMDGLA 608

Query: 64  ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+Q+++  S+  +IP++A+TA  M GD ER    G + +I+KPI        +++++
Sbjct: 609 ATRQLRQQESDGHQIPILAMTANVMAGDRERCLAAGMDDHIAKPIDPDKLYAALQRWV 666



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 55/119 (46%), Gaps = 5/119 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           +++++ +D+     +   L+ +  ++     +G +AL++        +  +V+++D  + 
Sbjct: 403 RRMLVADDSASARTILAALLRSMSFVVDTAESGQQALQMIASAEQEGNAYEVVLLDWHMP 462

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + G+E  +++      + +  + VT +  +      +  G +  + KP+  S+  +TI
Sbjct: 463 GLDGIETGRRLIARGLGKRLYRVMVTGYGREEVFREAQSAGFDRVLVKPVCASVLFDTI 521


>gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED        +  ++ + +  ++   G E +E AR+HKP+V+++DI L  + G
Sbjct: 1   MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K +++  E   + +I +TA +   D+    + G + YI KP +       IK  + 
Sbjct: 61  LEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 916

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 69/118 (58%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ EDN +N ++ + ++   G   +   +G +A++L R H  D+I+MD Q+  + G E 
Sbjct: 662 VLLAEDNPVNQEVAKAMLSRLGLNTVIAHDGKQAVDLIRNHHYDIILMDCQMPVMDGFEA 721

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T QI++   L +IP+IA+TA A + D  +    G + ++SKP +L    + I +++ +
Sbjct: 722 TAQIRQH--LNKIPIIALTANATEDDRTQCLNAGMDDFLSKPYTLDQLQQKILQWLPQ 777



 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           ++++V+DN+ N ++ R  ++     A+ T +   AL    +         ++I+D+ + +
Sbjct: 515 RILVVDDNQTNREILRLQLQNWKIQAVCTHSADHALFAMTKACNINEPYHLVILDMHMPK 574

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GL++ K+I  D  L +  ++ +T+      +      G   Y++KP+     ++ I  
Sbjct: 575 MDGLQLAKKIHADPTLNKTRIMMLTSTHHDVTQLAKDNAGILRYVNKPVRQKELIDIIMD 634

Query: 119 YIGE 122
            +G 
Sbjct: 635 VMGR 638


>gi|169632218|ref|YP_001705954.1| osmolarity response regulator [Acinetobacter baumannii SDF]
 gi|169794452|ref|YP_001712245.1| osmolarity response regulator [Acinetobacter baumannii AYE]
 gi|184159742|ref|YP_001848081.1| osmolarity response regulator [Acinetobacter baumannii ACICU]
 gi|213158975|ref|YP_002320973.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215482041|ref|YP_002324223.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
           AB307-0294]
 gi|260550801|ref|ZP_05825008.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260556885|ref|ZP_05829102.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|262280372|ref|ZP_06058156.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|293610675|ref|ZP_06692975.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|299768511|ref|YP_003730537.1| osmolarity response regulator [Acinetobacter sp. DR1]
 gi|301346029|ref|ZP_07226770.1| osmolarity response regulator [Acinetobacter baumannii AB056]
 gi|301512909|ref|ZP_07238146.1| osmolarity response regulator [Acinetobacter baumannii AB058]
 gi|301595102|ref|ZP_07240110.1| osmolarity response regulator [Acinetobacter baumannii AB059]
 gi|332850218|ref|ZP_08432581.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013150]
 gi|332868815|ref|ZP_08438420.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013113]
 gi|332874244|ref|ZP_08442164.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6014059]
 gi|169147379|emb|CAM85240.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|169151010|emb|CAO99647.1| two-component response regulator [Acinetobacter baumannii]
 gi|183211336|gb|ACC58734.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078590|gb|ABO13619.2| two-component response regulator [Acinetobacter baumannii ATCC
           17978]
 gi|213058135|gb|ACJ43037.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213986795|gb|ACJ57094.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
           AB307-0294]
 gi|260406111|gb|EEW99596.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260409491|gb|EEX02792.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|262258150|gb|EEY76884.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|292827019|gb|EFF85384.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|298698599|gb|ADI89164.1| osmolarity response regulator [Acinetobacter sp. DR1]
 gi|322509655|gb|ADX05109.1| ompR [Acinetobacter baumannii 1656-2]
 gi|323519675|gb|ADX94056.1| osmolarity response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332730862|gb|EGJ62170.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013150]
 gi|332733129|gb|EGJ64327.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013113]
 gi|332737528|gb|EGJ68435.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6014059]
          Length = 254

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +  +   L ++    +I++D  L    GL 
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +   + P+I +TA     D     + G + Y+ KP + +  +  I+  +  
Sbjct: 82  ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138


>gi|146342589|ref|YP_001207637.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146195395|emb|CAL79420.1| putative sensor histidine kinase with multiple PAS/PAC and a
           response regulator receiver domain [Bradyrhizobium sp.
           ORS278]
          Length = 1231

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN       R L+ T  Y      +G  ALE   + KPD+++ D+ + ++ G+
Sbjct: 641 ARILLADDNADMRDYVRRLLVTR-YDVEAVADGKAALEAIARAKPDLVLSDVMMPQLDGM 699

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++  +++ D++   +PVI ++A A +       + G + Y+ KP S    +  ++ ++
Sbjct: 700 QLLARVRADAQFSTVPVILLSARAGEESRVEGMQAGADDYLIKPFSARELLARVEAHL 757


>gi|152995117|ref|YP_001339952.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinomonas sp. MWYL1]
 gi|150836041|gb|ABR70017.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinomonas sp. MWYL1]
          Length = 331

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 70/117 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   N+++ R +++ + Y     R+G +AL+L  +   D+I++DI +  ++GLE
Sbjct: 10  RILLVDDEPSNLRVLRQVLQAARYRLSFARSGQDALKLVEKEPVDLILLDIMMPNMTGLE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K++     IPVI VTA     DE +  + G   YI KPI  +I +  +K ++
Sbjct: 70  VCERLKQNPATAHIPVIFVTALKDSIDEAKGFEIGAVDYIVKPIVPAIVLARVKTHL 126


>gi|313497980|gb|ADR59346.1| Integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida BIRD-1]
          Length = 643

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 69/116 (59%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N  +   ++ + G       +G+EA+EL  + +   ++MD +L  + G E 
Sbjct: 517 VLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVELVGRQRFAAVLMDCRLPHLDGYEA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++I++      +P+IA+TA A++GD ER    G + Y+SKP+  +   + +++++
Sbjct: 577 TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQQVLQRWL 632


>gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
 gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
          Length = 237

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED +   K+ +  +E  GY   Q  +G E L+     + D+I++D+ + +ISG ++
Sbjct: 6   ILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENEQIDLILLDLMIPKISGEDL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+  S    +PVI VTA   + +     K G + Y++KP S    M+ IK  +  
Sbjct: 66  IKEIRNKS---NVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRR 120


>gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++   G+      +G +ALE  R+ +PD++++D+ L    
Sbjct: 1   MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLMLPGAD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +QI+ +S    +P++ +TA +   D     + G + YI KP      +  ++  +
Sbjct: 61  GIDVCRQIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
 gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+  VED+   +   +  +   GY  +      + LEL +Q   D++++D+ L + SG
Sbjct: 1   MNKICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPDGSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+++EDS L+EIPVI +TA   + +       G + YI+KP  +   +  +   + 
Sbjct: 61  YEICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D          +++  GY       G    +LA Q   D++I+D  L   SGLE
Sbjct: 2   RILLVDDEVELTDPLSRVLKREGYEVDVAYEGQSGRQLAMQSDYDLLILDWMLPHQSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++   +    PV+ +TA     D       G + Y+ KP  L   +  ++  +  +
Sbjct: 62  LCQQLRSQGKT--TPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRRS 119


>gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 227

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED E        L+E  GY      +G++A+E+   H  D+I++D+ L  + G
Sbjct: 1   MTKILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGADIILLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+  S    +P+I +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRAIRAKSM---VPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|325288326|ref|YP_004264507.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963727|gb|ADY54506.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 244

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  + +VED     +L +  +E  GY      NG   L+  R   P++ ++DI L +I
Sbjct: 1   MTKSLIYVVEDESHIQQLVKYNLEKEGYRVKAFGNGESFLQETRLKVPELFLLDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ K ++++    ++P+I +TA   + D+    + G + YI+KP S+   +  +K  
Sbjct: 61  DGLELCKLLRKNPATHKVPIILLTAKGEEFDKVLGLEIGADDYITKPFSIREMIARVKAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 226

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +    +  L+  +G EA+++  ++    ++I+D+ + ++ G 
Sbjct: 5   KILVVDDESRMRKLVKDFLTKKNFQVLEAGDGEEAMDIFYKEKDIALLILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+++S+   +P+I +TA   + DE    + G + YISKP S  I +  ++  +  
Sbjct: 65  EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121


>gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL    + K D++I+DI +  + G +
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 67  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 236

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED E        L+   G+  +   +G  ALE    +  D++++D+ L  +SG
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKFADNDIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRA---TSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|209516015|ref|ZP_03264875.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209503475|gb|EEA03471.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 241

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     L RD +   G       +         + +PD+I++D+ +  + 
Sbjct: 1   MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   ++++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|159045360|ref|YP_001534154.1| response regulator [Dinoroseobacter shibae DFL 12]
 gi|157913120|gb|ABV94553.1| response regulator [Dinoroseobacter shibae DFL 12]
          Length = 462

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D   N  + +  + T+ Y  LQ  NG  A+++A + +PD+I++D+ + ++ 
Sbjct: 1   MSGKILVVDDVATNRIVMKVKLATACYDVLQADNGASAIKMAHEAQPDLILLDVLMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++K D E   IP+I +T+        R    G + +++KP++    +  ++  +
Sbjct: 61  GYTVCERLKADPETAHIPIIMITSLNDTEARVRGLSCGADEFLTKPVTELTLLARVRSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 35.5 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 5/55 (9%), Positives = 17/55 (30%)

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++     ++   I +          R    G +  +  PI++      ++  +  
Sbjct: 219 LRSRPATRQSRQIFILPQGETELAARALDLGADDVVFAPIAVEEMAVRLRAQLQR 273


>gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 219

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED +   +     ++   Y      +G   L+ A     D+II+D+ L  I+G
Sbjct: 1   MTNILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +QI+++   Q  P+I +TA     D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LEICRQIRQE---QSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|220908072|ref|YP_002483383.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7425]
 gi|219864683|gb|ACL45022.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7425]
          Length = 392

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 60/117 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D+ +  ++ +  ++  GY      +G   LEL +   P +II D  ++ + GLE+
Sbjct: 11  ILLIDDDRILQRILQKTLQEQGYDVSLASSGEAGLELVKHTHPQLIICDWLMEGMDGLEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++IK D +L     I +T+ +   D  +    G + ++SKPI  S  +  ++  + 
Sbjct: 71  CQRIKTDPDLDHPFFILLTSRSAVEDRVQGLNTGADDFLSKPIDPSELIARVRAGLR 127


>gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 510

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L  D +  +G+  L  ++G++AL++    +PD+I++D+ + E+ G E+
Sbjct: 8   ILLVDDTVANLQLVSDFLMKAGFNVLAVKSGIQALKIVAITEPDLILLDVVMPEMDGFEV 67

Query: 65  TKQIKEDSELQEIPVIAVTA---FAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K   E Q+IPVI +TA    A    + +  K G   YISKPI L   +  ++ ++
Sbjct: 68  CRRLKAQEETQDIPVIFMTAVADRANPSYKIKGLKLGAVDYISKPIQLEEVLLRVQTHL 126


>gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
 gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+     L    +++ GY      NG EAL L   +  D++I+DI + ++ 
Sbjct: 1   MKEKILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+    +I+E      +P+I ++A   + D+ +    G + YISKP      +  +K  +
Sbjct: 61  GILTCIKIREKF---TMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|171910123|ref|ZP_02925593.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 242

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           +V+D+    +L    +   G+     ++  +  +   + KPD++++DI +    GL + +
Sbjct: 12  VVDDHGEIRELVVRYLSQHGFRVTAAQDATDFRQQLEREKPDLVVLDIMMPGEDGLALCR 71

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++ +++   IP+I +TA A   D     + G + Y+ KP +    +  I+  +  
Sbjct: 72  HLRAETQ---IPIIFLTAMAEDADRIVGLELGADDYLVKPFNPRELLARIRAVLRR 124


>gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E+T
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 62  KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116


>gi|90580895|ref|ZP_01236697.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
 gi|90437966|gb|EAS63155.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
          Length = 230

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L +D++E  G+  ++  NG + LE    +  D+I++D+ +  ++G
Sbjct: 1   MAKILLVDDDIELTALLKDILELEGFDVIEANNGQQGLEKV-DNSIDLILLDVMMPVMNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++E       PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  TEMLRRLRE---AHSTPVMMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARIRAVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 834

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 6/126 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQLQ 57
           +V++VEDN  N ++ R L+   G       NG++A+   +      +   D+I MDIQ+ 
Sbjct: 477 RVLVVEDNPGNQEVARHLLGDLGLHVDICNNGLQAINRIKDALYRKEGLWDLIFMDIQMP 536

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           E+ GL+ T+ +++   L + PVIA+TA A+ GD+ER  K G   YI+KPI ++    T+K
Sbjct: 537 EMDGLQATQLLRKLPGLDKTPVIAMTAMAIAGDKERCLKAGMNDYITKPIDVNQLYRTLK 596

Query: 118 KYIGEA 123
            ++ EA
Sbjct: 597 AWMREA 602


>gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 230

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    IP++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---IPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612]
 gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D +    L    +   GY   +  +  EAL    ++ P++ ++D+ + E+ 
Sbjct: 1   MQTEILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALASGLENPPELAVLDVMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++++E       P+I +TA   + D+      G + Y++KP      +  +K  +
Sbjct: 61  GFTLCRRLREKYTF---PIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G E L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|253568488|ref|ZP_04845899.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298385458|ref|ZP_06995016.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|251842561|gb|EES70641.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298261599|gb|EFI04465.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 224

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ ED           ++  G+      +G     + ++   D++I+DI + +I+G
Sbjct: 1   MAKILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+    ++    Q  PVI +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 61  LELCHLYRQMFGYQA-PVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 68  CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|330971298|gb|EGH71364.1| response regulator receiver [Pseudomonas syringae pv. aceris str.
            M302273PT]
          Length = 1172

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 1107

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1108 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167

Query: 122  E 122
            +
Sbjct: 1168 K 1168



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 782 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 841

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 842 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893



 Score = 78.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R H  D +I+D++L ++ G 
Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 961

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 962 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 992


>gi|329956519|ref|ZP_08297116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328524416|gb|EGF51486.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1449

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN       +  +  S Y  +   NG E L+ A  + PD+II D+ +  + GLE+
Sbjct: 1190 ILVVEDNNELRHFLKSSLSGS-YNVITASNGKEGLQRAIDNVPDLIISDVMMPIMDGLEM 1248

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              QIK ++ +  IP+I ++A A   D     + G + YI+KP S +     I   + +
Sbjct: 1249 IGQIKANNNICHIPIIVLSAKASLDDRIAGLEHGIDDYITKPFSSTYLKIRITSLLRQ 1306


>gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I +D     ++    +   G+     ++G EALEL R  +PDV+++D+ + E+ G  
Sbjct: 10  KILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVMMPELDGFA 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+  SE   +PVI +TA     D     + G + Y+ KP S       I+  +  A
Sbjct: 70  VLERIRAQSE---VPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRA 126


>gi|312797029|ref|YP_004029951.1| transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
 gi|312168804|emb|CBW75807.1| Transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
          Length = 240

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D++    L RD +   G       +         + +PD+I++D+ +  + 
Sbjct: 1   MATQILVIDDDQELRDLLRDYLTRQGIEVSVLHDAASLERRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 222

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D++  + L +  +   G+      +G   L   ++++P ++++DI +  + 
Sbjct: 1   MATRVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++     L +I +I +TA     D+      G + Y+ KP S    +  ++  +
Sbjct: 61  GLELCRRL---HVLGDIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|298493108|ref|YP_003723285.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
 gi|298235026|gb|ADI66162.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
          Length = 338

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N++L   ++E+ G+   +T +G  A++ A+   PD+I++DI + +++G E+
Sbjct: 13  ILIVDDNPDNLRLLSKMLESKGFKVKKTVSGEIAIQAAKIEPPDLILLDINMPDMNGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K   +   IP+I ++A     D+    + G   YI+KP      +  ++  +
Sbjct: 73  CRQLKSQEKTANIPIIFISALDQTTDKIIAFEIGGGDYITKPFQELEVLARVRNQV 128


>gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1097

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN +N       +  +G+       G EA+      + D+++MD ++ ++ G+ 
Sbjct: 836 RVLVAEDNTVNQMFVASWLRNAGWECDVVATGEEAVHAFSNARYDLVLMDCRMPDMDGMT 895

Query: 64  ITKQIKEDSEL----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I+   E        PVIA+TA AMKGD E   K G + Y++KP +    M TI + 
Sbjct: 896 ATQEIRSYEEATGSPSRTPVIALTANAMKGDRELCLKAGMDEYLTKPFTPEALMATIARV 955

Query: 120 I 120
           +
Sbjct: 956 L 956


>gi|167585829|ref|ZP_02378217.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 241

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +   +  +  ++  GY      NG   LE A     D I++D+ L EI+G
Sbjct: 1   MSRILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+ +   +  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVCRRIRRE---KITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 231

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+I++D+    ++  D +   G+ A    +  + L++ ++ K D++I+DI L +  G 
Sbjct: 4   KKVLIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIMLPDEDGW 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++I+      ++P+I ++A     D+    + G + YI+KP S    +  IK  +  
Sbjct: 64  EFCQKIR---PEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRR 120


>gi|303246719|ref|ZP_07332997.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492059|gb|EFL51937.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 625

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ EDN +N    ++L+E  G+  +    G  ALE+ R+ + DVI+MDIQ+ E+ GLE
Sbjct: 373 TILLAEDNPINQIYAQELLEMDGHRVMVAHTGRRALEMLRRQRFDVILMDIQMPEMDGLE 432

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I++D+      +IP++A+TA A+KGD E   + G   Y+SKP+S       + + +
Sbjct: 433 ATRAIRQDTTGDFDPQIPIVALTAHALKGDRETFLRAGMNEYLSKPVSPESLAAALSRAM 492

Query: 121 GE 122
           G 
Sbjct: 493 GR 494


>gi|312115580|ref|YP_004013176.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220709|gb|ADP72077.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 125

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 82/120 (68%), Positives = 106/120 (88%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVEDNELNMKLF DL+E  GY  LQTRNG++A+ LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MGKTILIVEDNELNMKLFHDLLEAHGYTTLQTRNGIDAIALARKHRPDLIVMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++TK +KED  L+ IP++AVTAFAMKGDEERIR+GGCEAY+SKPIS+S F+ETI+++I
Sbjct: 61  GLDVTKWLKEDDSLRHIPIVAVTAFAMKGDEERIREGGCEAYVSKPISVSRFLETIRQFI 120


>gi|222081138|ref|YP_002540501.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725817|gb|ACM28906.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 241

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K   + +V+D+     L    +E  GY      +G+    +  +   D++++D+ +  
Sbjct: 1   MQKAAHIAVVDDHADIRNLVGQYLEQQGYRVSVADSGVALRRILERSAVDLVVLDVMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL + + ++      ++P+I +TA     D     + G + Y+ KP +    +  I+ 
Sbjct: 61  EDGLSVCRHLRA---TMDVPIIFLTAMTEDTDRIIGLELGADDYLVKPFNPRELLARIRA 117

Query: 119 YIGEA 123
            +  A
Sbjct: 118 VLRRA 122


>gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1339

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V++V+D+  N+     ++E  G   L   +G + +E   +H   D+I+MD+ + E+ G 
Sbjct: 1220 TVLVVDDDARNLFALSGVLELHGVRVLHAEDGRKGIEALTRHAGVDLILMDVMMPELDGY 1279

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              T +I+   E   +P+IAVTA AM GD E+    G   Y++KP+     +  ++ ++  
Sbjct: 1280 AATAEIRRMPEYAALPIIAVTAKAMPGDREKSLASGASDYVTKPVDADDLIARVRHWLTR 1339



 Score = 38.6 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%)

Query: 23   ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81
            E  G   +   +  EA           +++++ + +   L     +  D  L  +PV+A
Sbjct: 1089 EHGGIQIVNATSSREAAAALATDSFHCVVLELDMPDGEALRFLDALDGDPALSSLPVLA 1147


>gi|172061354|ref|YP_001809006.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993871|gb|ACB64790.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 241

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2]
 gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 243

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+  +   +G     L  +   D+I++D+ +    GL 
Sbjct: 10  KVLVVDDDARIRDLLHRYLTQEGFDVMAAEDGKALNRLLLRETVDIIVLDLMMPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 70  ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126


>gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 226

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D+  N+KL   ++E +GY  ++  +G   L+   Q+ PD+I++D+ + + +G ++
Sbjct: 3   ILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVMMPKTNGFDV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +QI+      ++P+I ++A +   D     + G + Y+ KP   S  +  ++  +  
Sbjct: 63  CRQIR---RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRR 117


>gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 972

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ ED+ L+    + ++E SGY      +G +AL+L  +   D+I+MD+Q+  + G+
Sbjct: 845 RRILLAEDDALSSLTCKRMLEKSGYSVAAANDGQKALQLLTEQDFDLILMDVQMPVMDGV 904

Query: 63  EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E TK I+  S L     IP++A+TA+AM GD+E+    G + YI+KP+     +E +++ 
Sbjct: 905 EATKAIRGSSILGVKSSIPIVAMTAYAMSGDKEKFLASGMDDYIAKPVDKEALVEVVERV 964

Query: 120 IG 121
           + 
Sbjct: 965 LR 966


>gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
 gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
          Length = 233

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           KV++V+D     KL +D +   GYI L+  +G EA+++   +K   +II+D+ + ++ G 
Sbjct: 5   KVLVVDDESRMRKLVKDFLSKKGYIVLEAGDGEEAVDIFMNNKDIGLIILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  K+I++     ++P+I +TA + + DE    + G + YI+KP S  I +  ++  +  
Sbjct: 65  ETCKEIRK---FSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRR 121


>gi|78355591|ref|YP_387040.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217996|gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 981

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 73/125 (58%), Gaps = 6/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP------DVIIMDIQLQ 57
           + ++VEDN +N  +  D+++  G+  +   +G EAL +    +P      DV+ MDIQ+ 
Sbjct: 653 RALLVEDNIINRHVALDMLQDMGFSVVSAEHGEEALAVLDDVEPPSGPGFDVVFMDIQMP 712

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G+E T+ I++    + IP+IA+TA  M  D ++  + G   Y++KP+   + ++ ++
Sbjct: 713 VMDGIEATRVIRQHPRWRHIPIIAMTAHVMSEDRDKALEAGMNDYVTKPVDRMMLLQVLQ 772

Query: 118 KYIGE 122
           +++GE
Sbjct: 773 RHVGE 777



 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
           +V++VEDNE N  +   ++E  GY     ++G  A E  ++     D+I++D +L  + G
Sbjct: 515 RVLLVEDNESNRLVMTRMLERLGYDCDALQDGYTAYERLKRQAALYDLILLDWRLPGVDG 574

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ + +    PV  +TAF  + + ER  + G  +++SKP+ LS   + I+   G
Sbjct: 575 LEVLEKLRAEKQ-PLPPVFMMTAFGREAELERAEELGVASFLSKPVKLSSLSDAIRAMRG 633

Query: 122 E 122
           E
Sbjct: 634 E 634


>gi|26990865|ref|NP_746290.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida KT2440]
 gi|24985876|gb|AAN69754.1|AE016611_12 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 643

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 69/116 (59%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N  +   ++ + G       +G+EA+EL  + +   ++MD +L  + G E 
Sbjct: 517 VLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVELVGRQRFAAVLMDCRLPHLDGYEA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++I++      +P+IA+TA A++GD ER    G + Y+SKP+  +   + +++++
Sbjct: 577 TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQQVLQRWL 632


>gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M KK  +++V+D +   ++    +    +  +   +G+EALE  +    D+II+DI + +
Sbjct: 1   MEKKKSILVVDDEKDIREVIEIYLINEEFEVITACDGLEALEKLKNEAIDLIILDIMMPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G+    +I+E+   +++P+I ++A +   D+      G + Y+ KP +    +  +K 
Sbjct: 61  LDGIRTCLKIREE---KKMPIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKS 117

Query: 119 YIGE 122
            I  
Sbjct: 118 QIRR 121


>gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E   K     ++  GY      +G   L+ A ++  DVI++D+ L E++G
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E    ++ P+I +TA     D       G + Y+ KP ++   +  I+  + 
Sbjct: 61  LEVARRLRES---KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 226

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G E L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL+     K D++I+DI +  + G +
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 73  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKR 128


>gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 236

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++V+D+     L R  +   GY  ++   G E          D+II+D+ L    G
Sbjct: 1   MKTILVVDDDADLRSLLRAYLTDQGYHVIEAAEGSELWTRLENSTVDLIILDLMLPGEDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + I+     Q  P++ +TA   + D     + G + Y+ KP      +  I+    
Sbjct: 61  LALCRTIRAR---QTTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIFR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7]
 gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7]
          Length = 241

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D +   +L +  +E   Y+  +  NG +A+++A ++  D+I++D+ L ++ G+E+ 
Sbjct: 9   LVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDYDLILLDLMLPKMDGIEVA 68

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +I+E    ++ P++ +TA   +       + G + YI KP S    +  +   +  
Sbjct: 69  GKIRE---AKDTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKR 122


>gi|160945860|ref|ZP_02093086.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443591|gb|EDP20596.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii
           M21/2]
          Length = 224

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I +D    + +  +  E+ G+  L   NG EAL+   +  PD+I++DI +    
Sbjct: 1   MNAKILIADDESDIVSMLGNFFESKGFRVLPAFNGAEALKQVEKQ-PDIILLDINMPGTD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ K+I+   +    P++ +TA     D+ +    G + YI KP SL      ++ ++
Sbjct: 60  GLEVCKRIR---DHISCPILFLTARIEDTDKVKGFAVGGDDYIVKPFSLVELDARVRAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1]
 gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1]
 gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 225

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +K  V+++ED +   +     +   GY      +G+  L   R+  PD++I+D+ L  
Sbjct: 1   MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ ++I++       P+I +TA     D+      G + Y+ KP S+   +  ++ 
Sbjct: 61  LDGLEVARRIRK---TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRA 117

Query: 119 YIGE 122
           ++  
Sbjct: 118 HLRR 121


>gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter
            succinogenes subsp. succinogenes S85]
          Length = 1260

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 5/123 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59
            KKV++VEDNE+N ++  DL+E +G+      NG EA+EL RQ    + D+++MD+Q+  +
Sbjct: 1136 KKVLLVEDNEMNRQIACDLLEDNGFEVFTAENGEEAVELVRQSVPGQYDIVLMDVQMPVM 1195

Query: 60   SGLEITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             G   T+ I+         IP+IA+TA A + D +     G + +ISKPI+       + 
Sbjct: 1196 DGYAATRAIRVLPAGYQSRIPIIAMTANAFEEDRKAALDAGMDEHISKPINFDKMKYILS 1255

Query: 118  KYI 120
            +++
Sbjct: 1256 RFL 1258


>gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 226

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G E L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 224

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED      +    ++ +GY      +G EAL+     + D++I+DI + +++G E
Sbjct: 2   KILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIMMPKVNGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++   +     V+ +TA     D+ +    G + YI KP   +  M  I+  +  
Sbjct: 62  VIKKLR--DKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRR 118


>gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 999

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 70/118 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED E N +L  +L+   G+      NG+EA+ L +Q  P +I+MD+ +  ++G +
Sbjct: 784 RILIVEDVEDNRRLLFELLAQVGFEVRTADNGVEAISLWQQWHPHLILMDMLMPVMNGSQ 843

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+QIK   E ++  +IA+TA A   D+    K GC+ +I+KP    I  E I +++G
Sbjct: 844 ATRQIKATQEGEKTVIIAITANAFSDDQLAAIKVGCDDFITKPFREQILFEKIAQHLG 901


>gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + G
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 61  FQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 232

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D++   +  +  ++  G    + ++G++AL + ++ +  +I+MDI + ++ G++ 
Sbjct: 6   ILVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKT 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E    ++IP+I ++A +   D+      G + Y++KP +    +  +K  +  
Sbjct: 66  TFKIREK---KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 120


>gi|295677872|ref|YP_003606396.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437715|gb|ADG16885.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 247

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D+ +  +L  + +   G+      NG+      +Q +P ++++DI + E+ 
Sbjct: 1   MNQTILIVDDDPVVRELVSEYLHGRGFNVATLENGLALQRRLQQERPALVVLDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++      +IPVI +TA A   D     + G + Y+ KP   S  +  I+  +
Sbjct: 61  GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126]
 gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
 gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126]
 gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED +   +     ++  GY  +   NG E LE+A +   D+I++D+ L E+ 
Sbjct: 1   MSKRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++++   ++  ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQQE---KDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1200

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 75/117 (64%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VEDN +N ++  +L++++GY      NG  A+++  + + D ++MDIQ+  + GL 
Sbjct: 1080 RVLLVEDNFINQQVATELLKSAGYEVDVAENGQIAIDMIEEKEFDAVLMDIQMPVMDGLT 1139

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             TK++++     E+P+IA+TA AM GD E+    G  A+I+KPI L+   +T+  +I
Sbjct: 1140 ATKELRKRYSSTELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLNELFDTLSHWI 1196



 Score = 94.0 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K ++V+DN   ++++  +++   +      +G EA+    +   D++++D  + E+ G+ 
Sbjct: 937  KTLVVDDNPTALQIYSSVMQDFHFEVDTAASGSEAIYKLGRSSVDLLLLDWMMPEMDGIA 996

Query: 64   ITKQI-K--EDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +  ++ +   D  L + P+ I +TA+A +  ++ + K    A + KP   S   + I
Sbjct: 997  VIDELDRMVADGRLDKRPIVIMMTAYAAEPLQKDVEKSNIFAMLQKPFKASALFDEI 1053


>gi|319642790|ref|ZP_07997428.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317385534|gb|EFV66475.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1353

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KV++VED+E   +     + +  Y  L++ NG EALE      PD++I D+ + E+ GL 
Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++IK++  L  IPVI +TA   + D     + G +AY++KP  + I  +T    I 
Sbjct: 1150 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIR 1207


>gi|266624703|ref|ZP_06117638.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288863426|gb|EFC95724.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 244

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++  +D+    ++ R L+   GY  ++  NG+EA+E A  H  D+II+D+ +   SG
Sbjct: 17  MKKILFADDDPEIREVVRILLARDGYEVVEAVNGIEAVEKA-DHTIDLIILDVMMPGCSG 75

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E   +I++ S     P++ +TA +   D+E     G + Y+ KP S       +   + 
Sbjct: 76  VEACGEIRKKSSA---PILFLTAKSRDRDKEEGFAAGGDDYLVKPFSSVELKARVNAMLR 132

Query: 122 E 122
            
Sbjct: 133 R 133


>gi|254881403|ref|ZP_05254113.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254834196|gb|EET14505.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1348

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KV++VED+E   +     + +  Y  L++ NG EALE      PD++I D+ + E+ GL 
Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++IK++  L  IPVI +TA   + D     + G +AY++KP  + I  +T    I 
Sbjct: 1150 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIR 1207


>gi|66045681|ref|YP_235522.1| response regulator receiver [Pseudomonas syringae pv. syringae B728a]
 gi|63256388|gb|AAY37484.1| Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A, N-terminal:CHASE3
            [Pseudomonas syringae pv. syringae B728a]
          Length = 1172

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 1107

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1108 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167

Query: 122  E 122
            +
Sbjct: 1168 K 1168



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 782 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 841

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++   ++  +E     G   Y  KP +     +   K 
Sbjct: 842 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893



 Score = 78.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R H  D +I+D++L ++ G 
Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 961

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 962 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 992


>gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +     +E  GY+     +G EALE  +  K D+II+D+ L  I G E+
Sbjct: 8   ILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEKFDLIILDVMLPGIGGFEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+       +PV+ +TA + + D       G + Y+ KP +L  F+  +   +  +
Sbjct: 68  CERIRTLD--SRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRS 124


>gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
 gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
          Length = 231

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IVED      L    ++   Y   +     EALE   ++  D+ I+DI L ++S
Sbjct: 1   MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I+E       P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLTICQKIREKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
          Length = 831

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 9/128 (7%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N  +   ++E  G+      NG EA+E       D+++MD+Q+  + G+E 
Sbjct: 572 ILLVEDNPVNQTVASRMLERVGHKVTVVNNGAEAIEAFDAGHFDLVLMDLQMPVMGGIEA 631

Query: 65  TKQIKEDSE---------LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           T+ I+              + +P++A+TA AM+ D  R  + G + Y++KPI     +  
Sbjct: 632 TQAIRAREARRSWAVQGGWRAVPIVAMTAHAMESDRARCLEAGMDDYVAKPIRAGDLLAA 691

Query: 116 IKKYIGEA 123
           I++    A
Sbjct: 692 IRRVCSPA 699



 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 34/72 (47%)

Query: 46  KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
             D ++MD  +    G  + ++ +E +   +  V+ + +   + D  R ++ G ++ ++K
Sbjct: 462 PFDFVLMDADMPAPGGFALAERFQEAAPALDRIVLMLPSHTQRADLVRCQQLGLQSRLAK 521

Query: 106 PISLSIFMETIK 117
           P +     E ++
Sbjct: 522 PFAAEDLYEALR 533


>gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L]
 gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L]
          Length = 254

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 94  CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148


>gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1]
 gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens
            MI-1]
          Length = 1271

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 76/115 (66%), Gaps = 1/115 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VEDN  N +L   ++    Y  ++  NG++ALE+  + K D+++MD+Q+  + G E
Sbjct: 1047 KILLVEDNHFNQRLVTHMLSDD-YSIVEVENGVQALEILEEQKFDLVLMDMQMPVMDGYE 1105

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T+ I++ ++ + +P+IA+TA+AMKGD E+    GC  Y++KP+     ++TIK+
Sbjct: 1106 TTRLIRKQNKYKNLPIIALTAYAMKGDSEKCMAAGCNGYLAKPVKRDQLIKTIKQ 1160



 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 7/124 (5%)

Query: 1   MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M++     V++VED+    +L  + +E  GY  + T+ G +A+ LA+ ++PDV+I+DI L
Sbjct: 783 MMQGKNGTVLVVEDDWTTKQLISNYLEKVGYSVITTQQGKQAITLAKIYRPDVMILDILL 842

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +++G EI K+IK   E ++IP++  +   M   +E+    G   +I KPIS  + +  +
Sbjct: 843 PDLTGWEILKRIKTYEETKDIPIVVCS--VMPE-KEQAFSLGAVDFIEKPISEKVLISRL 899

Query: 117 KKYI 120
            K I
Sbjct: 900 GKLI 903



 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
             +++++D E  ++  + +IE  GY         +A     Q      I++D+ +  ++G 
Sbjct: 912  HIVLIDDEEATLQFLKKIIENEGYRTHTFARAGDAFYYLMQGGAVHAILLDLLMPGMNGF 971

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYI 120
            E  + ++   E ++IPVI  TA  +   + +     CE  ++K  +     +E + + +
Sbjct: 972  EFLESLRLKPEFRDIPVIINTAKDLTQKDYQKLNLKCEKILNKSLVHPHDLLEELSEIL 1030


>gi|298291496|ref|YP_003693435.1| response regulator receiver protein [Starkeya novella DSM 506]
 gi|296928007|gb|ADH88816.1| response regulator receiver protein [Starkeya novella DSM 506]
          Length = 123

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/123 (65%), Positives = 107/123 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  + TR+G+EA++LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MSKTVLIVEDNELNMKLFNDLLEAHGYSTVGTRSGVEAMDLARRHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+ +K D EL+ IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+S F+ET+++++
Sbjct: 61  GLDVTRALKADPELKAIPVIAVTAFAMKGDEERIREGGCEAYLSKPISVSKFLETVRQFL 120

Query: 121 GEA 123
             A
Sbjct: 121 PAA 123


>gi|312113933|ref|YP_004011529.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219062|gb|ADP70430.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 239

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++V+D++    L    +   G       +  EA    +    D++++DI +    G
Sbjct: 4   STHILVVDDHKDIRDLLAKFLVKHGMRVTVAADAAEARRHLKAGAFDLLVLDIMMPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + + I++ +     P+I +TA A   D     + G + Y++KP +    +  I+  I 
Sbjct: 64  ISLCRDIRDSNSA---PIIFLTAVAEDTDRIIGLELGADDYVTKPFNPRELLARIRAVIR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|215433475|gb|ACJ66703.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2151

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +KV++V+D+  N+     ++E  G       +  E LE   +    ++++MD+ + E+ G
Sbjct: 2016 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESAREGLEQLEKAADIELVLMDVMMPEMDG 2075

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +  + I+       +P++A+TA AMKGD E+  + G   YI+KP+ +   +  ++ ++
Sbjct: 2076 YQAMRAIRRMERFAHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 2134



 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED+ ++ +   +L+ +     +      EAL    + + D +++D+ L ++ G E+ 
Sbjct: 1873 LIVEDDPVHRQALLELLGSEDVETVAVGTAAEALAALAERRFDCMVLDLGLPDMPGAELI 1932

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            ++I E       P+I  T   +   +E   +   EA + K   S    +E
Sbjct: 1933 RRIHEAHGAGGPPLIVYTGRELSRAQETELRRVAEAIVVKDAQSPERLLE 1982



 Score = 52.1 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 18   FRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77
             R   + +G+  L +     AL+  R  +P  + +D+ L E++G  +  ++K D+  + +
Sbjct: 1763 LRAAAQGTGFKVLVSTEVEGALDAVRNTRPAAVAVDLDLPEMAGWVVLDRLKHDASTRAL 1822

Query: 78   PVIAVTAFAMKGDEERIRKGGCEAYI 103
            PV  V+   ++   ER    G   ++
Sbjct: 1823 PVYTVS---VEDHRERSLNLGAIGHL 1845


>gi|198277651|ref|ZP_03210182.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135]
 gi|198269348|gb|EDY93618.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135]
          Length = 1021

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN+      + L++   Y  ++  NG E +  A ++ PDV++ D+ +  + G+E 
Sbjct: 772 VLVIDDNQDVRDYVKMLLQDK-YTVIEAVNGQEGIRQAMKYVPDVVVCDVMMPVMDGIEC 830

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++K + +   IPV+ +TA+AM     +    G ++Y++KP +  + +  I+  I
Sbjct: 831 CKRLKSELQTSHIPVLMLTAYAMDEQRIQGYDSGADSYLTKPFNAKLLLARIRNLI 886


>gi|262409249|ref|ZP_06085793.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294645954|ref|ZP_06723622.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294806056|ref|ZP_06764914.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|262352996|gb|EEZ02092.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|292638699|gb|EFF57049.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294446739|gb|EFG15348.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1341

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+       D+++TS Y      NG +AL + R+  PD++I DI + E+SG 
Sbjct: 1077 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1135

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   IK D E+  IPV+ +TA   + +     + G +AYI+KP S+ I   TIK  +  
Sbjct: 1136 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1195

Query: 122  EA 123
             A
Sbjct: 1196 RA 1197


>gi|257439293|ref|ZP_05615048.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
 gi|257198168|gb|EEU96452.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
          Length = 242

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++I ED+       R L+   GY  ++  NG  ALE+ R    D++I+DI +  +SGL
Sbjct: 4   QTILIAEDDPDIRDGVRILLSGEGYHIIEAENGTRALEVFRPE-VDLVILDIMMPGMSGL 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++   L  +P++ +TA + + D+      G + Y+ KP S +     +K  +  
Sbjct: 63  RVCEELRK---LSTVPILFLTAKSQESDKLLGLTAGGDDYLPKPFSFAELSARVKALLRR 119


>gi|237713842|ref|ZP_04544323.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229445998|gb|EEO51789.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1330

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+       D+++TS Y      NG +AL + R+  PD++I DI + E+SG 
Sbjct: 1066 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1124

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   IK D E+  IPV+ +TA   + +     + G +AYI+KP S+ I   TIK  +  
Sbjct: 1125 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1184

Query: 122  EA 123
             A
Sbjct: 1185 RA 1186


>gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115]
          Length = 234

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +K  V+++ED +   +     +   GY      +G+  L   R+  PD++I+D+ L  
Sbjct: 10  MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 69

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ ++I++       P+I +TA     D+      G + Y+ KP S+   +  ++ 
Sbjct: 70  LDGLEVARRIRK---TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRA 126

Query: 119 YIGE 122
           ++  
Sbjct: 127 HLRR 130


>gi|221200233|ref|ZP_03573275.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD2M]
 gi|221205914|ref|ZP_03578928.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD2]
 gi|221209274|ref|ZP_03582255.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD1]
 gi|221169962|gb|EEE02428.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD1]
 gi|221173926|gb|EEE06359.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD2]
 gi|221179574|gb|EEE11979.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD2M]
          Length = 246

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E   +     PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRSVLDDGAPDLIVLDLMLPGEDGLA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + + +PV+ +TA + + D     + G + Y++KP ++   +  I+  +  A
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRA 124


>gi|170691903|ref|ZP_02883067.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170143187|gb|EDT11351.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 241

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     L RD +   G       +         + +PD+I++D+ +  + 
Sbjct: 1   MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   ++++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|21225798|ref|NP_631577.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783167|ref|ZP_05521598.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767048|ref|ZP_06526426.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799269|emb|CAB90891.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289697247|gb|EFD64676.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 233

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+    +     ++  G+      +G   L    +H+PD++++D+ L  +SG
Sbjct: 1   MARVLLIEDDPAVQRGVSLALKRRGHEVAVAGSGETGLLTLERHRPDLVLLDLMLPNMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+E    + IP+I ++A   + D     + G + YI KP    +    I+  + 
Sbjct: 61  LEVCRRIRES---KRIPIIILSARGDEIDMVVGLEAGADDYIVKPAGAELLEARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330982197|gb|EGH80300.1| response regulator receiver [Pseudomonas syringae pv. aptata str. DSM
            50252]
          Length = 1031

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 907  RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 966

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 967  FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1026

Query: 122  E 122
            +
Sbjct: 1027 K 1027



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 641 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 700

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 701 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 752



 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R H  D +I+D++L ++ G 
Sbjct: 761 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 820

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 821 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 851


>gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED E        L+   G+  +   +G  ALE    +  D++++D+ L  +SG
Sbjct: 1   MTNILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTVDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++       +PVI VT+   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRA---TSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 676

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+E   K+   ++    YI      G    +L      D+II+D+ L E+ G++
Sbjct: 2   RILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGIK 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +Q++       +PV+ VTA     ++      G + YI+KP  L   +  ++  +  
Sbjct: 62  FCQQLRAQEYT--LPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRR 118



 Score =  105 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 59/121 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++ V+D+   ++  +  +    Y  +     +E  +  +   PD++++DI + + +G+
Sbjct: 539 RKILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGI 598

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++     + +P++  TA A    ++   K G +  I K +S +  +  ++  +  
Sbjct: 599 ELCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKR 658

Query: 123 A 123
           +
Sbjct: 659 S 659


>gi|218439228|ref|YP_002377557.1| AraC family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171956|gb|ACK70689.1| two component transcriptional regulator, AraC family [Cyanothece
           sp. PCC 7424]
          Length = 265

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 69/121 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++++ED++LN  L ++ +E+ G+  +   +G + L+ AR+  PD+I+ DI + E+ G
Sbjct: 1   MTRILLIEDDQLNCTLLQECLESEGFHIISAEDGFKGLQQAREFLPDLILCDIIMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  Q+++D     IP I +TA   K +  R  + G + Y++KP++    +  ++  + 
Sbjct: 61  YSVLLQLRQDPSTAFIPFIFLTAKTSKAEYRRGMELGADDYLTKPLTAHEVIAAVETRLE 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 219

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 72/122 (59%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++ ED+    ++  D ++  GY+ ++  +G +A+E    +K D++I+DI + ++ 
Sbjct: 1   MDKKILLAEDDWKLRRIASDFLKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+  SE + +P+I +TA   + D  +  K   + Y++KP+SL I M  +K  +
Sbjct: 61  GWDVCREIR--SERKNVPIIMLTAKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|153873243|ref|ZP_02001890.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152070291|gb|EDN68110.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 716

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           KKV+IV+D+  N+     ++E      +   NG +AL+L  +     +++MDI + E+ G
Sbjct: 596 KKVLIVDDDSRNVFALATVLENYDMEVIFADNGKKALKLLEEQDNIAIVLMDIMMPEMDG 655

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  ++I+  +  +++P+IA+TA AMKGD+ +  + G   Y++KP+     +  ++ ++
Sbjct: 656 YEAMRKIRAQARFRQLPIIALTAKAMKGDKAKCIEAGANDYLAKPVDTDKLISLMRVWL 714



 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 6/118 (5%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED     +L  DL + + +  L   +G  +L+LA Q+KP  II+D+ L ++ G  + 
Sbjct: 331 LIIEDERKFSRLLMDLAQENAFKCLVAEDGETSLQLAEQYKPHAIILDVGLPQVDGWTVM 390

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKYI 120
           +++K++ + + IPV  ++A       +  +K G   Y+ KP+ ++   E    IK++I
Sbjct: 391 ERLKDNQDTRHIPVYFISASDQ---VQEAKKMGAIGYLLKPVGMAELEEAFQNIKQFI 445



 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+++ D +   +   DL+ +       T     AL    + + D II+D+ +++ +G+
Sbjct: 450 KNVLVITDEKQYHQKIFDLLRSEEIQITPTITMAIALRCLHKTRFDCIILDVDIEQGTGI 509

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI-FMETI 116
              +Q+++   L +IP+I  T   +   EE +     E  + K +  +   ++ +
Sbjct: 510 NFLEQMEKRESLHQIPLIVYTERDLTTTEEALLLQCAENLLIKSVRTAERLLDEV 564


>gi|119488494|ref|ZP_01621667.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455305|gb|EAW36445.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 396

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L   ++E   Y   +  NG +AL+      PD+I++DI + E++G +I
Sbjct: 11  ILIVDDTPENLRLLSSMLEEQSYKVRKATNGKQALKAIEAQSPDLILLDILMPEMNGYQI 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K +K     ++IP+I ++A     D+      G   YI+KP  +   +  ++  I
Sbjct: 71  AKHLKSLDSTRDIPIIFLSALNDTMDKVFAFDVGGVDYITKPFQVQEVLVRVRTQI 126


>gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 254

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQE 58
            +++++VED++   +   + +   G+      +G  AL L         D+I++D+ L  
Sbjct: 24  TRRLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPG 83

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GL++ ++++  +     P++ ++A   + D     + G + Y+ KP  L   +   + 
Sbjct: 84  LGGLDLCRELRRLNNT--TPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRA 141

Query: 119 YIGEA 123
            +  +
Sbjct: 142 LLRRS 146


>gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 234

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNT--TYVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60]
          Length = 1520

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
            ++++VEDN  N ++ R+L+E  G        G EA++  R      D+++MD+Q+  + G
Sbjct: 1164 RILVVEDNLNNQQIARELLEDEGASITLAAQGQEAVDRLRASPQGFDLVLMDLQMPVMDG 1223

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +  T+ I+    L+ +P+IA+TA AM  D +     G   +I KP +L   +  I+K++
Sbjct: 1224 INATQYIRRHLGLRSLPIIAMTANAMASDRQECLAAGMNDHIGKPFNLRELIHAIQKHL 1282



 Score = 95.2 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
             V++V+DN     L + +  T G+      +G +AL    +        DV+ +D  +  
Sbjct: 1011 HVLMVDDNPTACTLLQRMGTTLGWEVDTAGSGEQALARIAEQQRAGTHYDVMFVDWLMPG 1070

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEER-IRKGGC-EAYISKPISLSIFMET 115
            + G +  +++ +      +P ++ VTA       +R   + G  + ++ KP++  I +ET
Sbjct: 1071 LDGWQTIQRLHQQIPDTSMPLLVMVTANDRDCLLQRSSEEQGVLDGFLVKPVTPQILLET 1130

Query: 116  IKKYI 120
            +   +
Sbjct: 1131 VLSAL 1135


>gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yrkP
 gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis]
 gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 231

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED+E    L  + +  +GY  L+ ++G  AL+L      D++I+DI +  IS
Sbjct: 1   MAYRILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVNDSL-DLVILDIMMPGIS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  + I++ S    +P++ +TA +   D+      G + Y++KP S       +   +
Sbjct: 60  GIETCQHIRKSS---NVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|224537021|ref|ZP_03677560.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521329|gb|EEF90434.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1332

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DNE  + L +  + T  Y  L   NG +ALE+ R    D+++ D  + E+ G+E
Sbjct: 1082 TILLVDDNEEFLLLMKRKLATH-YNILTATNGKKALEIVRSEDVDLMVSDYMMPEMDGIE 1140

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   +K+D     IPV+ +TA +   D+ R    G   Y++KP  + +    I   +
Sbjct: 1141 LCATMKQDINTSHIPVLMLTAKSSVEDQVRCFNAGANGYLTKPFDMKMLNARIDNLM 1197


>gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G E L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 229

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E   K     ++  GY A    +G   L+LA ++  DVI++D+ L E++G
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E   +++ P+I +TA     D       G + Y+ KP ++   +  I+  + 
Sbjct: 61  LEVARRLRE---VKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++I +D+     L +  ++   Y  +  +NG+EAL+   + K DV+I+D+ +  + G 
Sbjct: 19  RRILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAFNESKFDVVILDVMMPYVDGF 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++I+E S   ++P+I +TA     D     + G + YI+KP   +  +  +   +  
Sbjct: 79  EACQRIRERS---DVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRR 135


>gi|16126701|ref|NP_421265.1| response regulator PleD [Caulobacter crescentus CB15]
 gi|221235482|ref|YP_002517919.1| response regulator PleD [Caulobacter crescentus NA1000]
 gi|60390590|sp|Q9A5I5|PLED_CAUCR RecName: Full=Response regulator PleD; AltName: Full=Stalked cell
           differentiation-controlling protein; Includes: RecName:
           Full=Diguanylate cyclase; Short=DGC; AltName:
           Full=Diguanylate kinase
 gi|302425180|sp|B8GZM2|PLED_CAUCN RecName: Full=Response regulator PleD; AltName: Full=Stalked cell
           differentiation-controlling protein; Includes: RecName:
           Full=Diguanylate cyclase; Short=DGC; AltName:
           Full=Diguanylate kinase
 gi|13424011|gb|AAK24433.1| stalked-cell differentiation controlling protein [Caulobacter
           crescentus CB15]
 gi|220964655|gb|ACL96011.1| GGDEF/response regulator protein pleD [Caulobacter crescentus
           NA1000]
          Length = 454

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N++L    +    Y      +G  AL +A +  PD+I++D+ +  + 
Sbjct: 1   MSARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++K+D   + IPV+ +TA   +GD  +  + G   +++KPI   +    ++   
Sbjct: 61  GFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+DNE   +     +    +  +   +  +A +++     D++I++   +   GL 
Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA-KISAGGPVDLVIVNAAAKNFDGLR 212

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T  ++ +   +++PV+A+     +G   +  + G    +S+PI        +K  I  
Sbjct: 213 FTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271


>gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   +++VED++   +L +  + T  Y  +   +G+E +    +   D+I++D+ +  +
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G E++K I+  S    +P+I +TA   + D+ +    G + YI+KP S  + +  ++  
Sbjct: 61  NGFEVSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
 gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
          Length = 230

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D +         ++  G+      NG E L  A +   D+ I+DI L  + G E+
Sbjct: 8   ILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDYDLFILDIMLPGMDGYEL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++  +     PV+ ++A   + D+    + G + Y++KP  +   +  ++  +  
Sbjct: 68  CRRLRARTAS---PVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122


>gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 230

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59
           +KKV+IVED ++  +         GY  +   +G   L+L   ++H   ++I+DI L  +
Sbjct: 5   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 64

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+++S    +P+I +TA + + D     + G + Y++KP   SI +   K+ 
Sbjct: 65  DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121


>gi|189467281|ref|ZP_03016066.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM
            17393]
 gi|189435545|gb|EDV04530.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM
            17393]
          Length = 1330

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+       D+ +T GY      NG EAL + R+  PD++I DI + E+ G 
Sbjct: 1078 QRILIVEDNDDLRNYLIDMFKT-GYNVQSCPNGKEALVIVREFDPDLVISDIMMPEMGGD 1136

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   IK D E+  IPVI +TA   + +     + G +AYI+KP S+ I   T+K  +
Sbjct: 1137 ELCSVIKGDLEISHIPVILLTALGDEKNMLEGLEIGADAYITKPFSVGILKATVKNIL 1194


>gi|172035362|ref|YP_001801863.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171696816|gb|ACB49797.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 121

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 72/121 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V++VED+    ++   +++ +G+  +   +G++ALE  ++  PD+I++DI + +++G
Sbjct: 1   MRAVLLVEDSPAQQRMIATILKKNGWQVIIAEDGIQALETIKEASPDLIVLDIVMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++IK +   Q +P++  ++   + D     K G +AYI+KP      + TI++ + 
Sbjct: 61  YEVCRRIKTNPSTQNVPIVMCSSKGEEFDRYWGIKQGADAYIAKPFEDIELIGTIQQLLR 120

Query: 122 E 122
           +
Sbjct: 121 Q 121


>gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 293

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++IV+D +  + + + ++E  GY   L   +  EA+ + + +K D+I++D+ +  +SG E
Sbjct: 62  ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 121

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               I+E     + P+  +TA +   D+      G + YI+KP +       I+ ++  
Sbjct: 122 ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 177


>gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 242

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 56/119 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D        +  +E  G+      +G +  E A+   PD+II DI +   +G  
Sbjct: 16  KILLVDDEPGLRTAVKTFLEDEGFEISIAVDGEDGWEKAQTIFPDLIISDIMMPRSNGYA 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ED +L   PVI +TA  M  D  +    G + YI+KP         +K  I  
Sbjct: 76  LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYIAKPFDPDELSARVKNVINR 134


>gi|94264235|ref|ZP_01288030.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|94266209|ref|ZP_01289918.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453216|gb|EAT03674.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455346|gb|EAT05550.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 403

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 54/118 (45%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E+N  +    +   GY      +G +AL+       D++++D+ +  + GL 
Sbjct: 7   RILVVDDEEVNRDILVRRLIRRGYQVEAVADGQQALDWLAGQPCDLVLLDVMMPVLDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             ++++ D     +PVI  TA     D     + G   Y++KPI   +    +   + 
Sbjct: 67  ALRRLRRDFSPTALPVIMTTARDDSEDVVTALEAGASDYVTKPIDFPVLQARMDTQLR 124


>gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1172

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+DN         ++  S +  +  R+G E  E A  H P VII D+ +  +SGL+
Sbjct: 815 TILVVDDNPDLRNYVSRILRKSNFNVVLARDGAEGFEFAEIHHPHVIITDLMMPVVSGLD 874

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + K I+E+ +L+  P+I +TA A +       + G +AY+SKP +    +  ++  +
Sbjct: 875 LIKMIREEKQLRGTPIILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLL 931



 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D   N+ L         Y  L+   G EALE+  +  +  VII D ++ ++SG 
Sbjct: 11  KILVVDDEPYNLDLLYRTF-FQNYKVLRAEGGSEALEVLEKSGEVAVIISDQRMPKMSGT 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKK 118
           E         +      I +T +    D       G    Y++KP         +K+
Sbjct: 70  EFLSL--TAEKYPNTIRIILTGYTDVEDLVEAINSGKVFKYVTKPWDDHELKALVKQ 124


>gi|298479885|ref|ZP_06998084.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298273694|gb|EFI15256.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1372

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  L   NG E  + A    PD+++ DI +  + G+ + 
Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED     IPVI +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227


>gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 237

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I++D+    +L    + + GY+     +G E ++ A       +++D+ L  ++
Sbjct: 1   MAKRILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVMLPTLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+++++   +PV+ +TA   + D     + G + Y+ KP +    +  ++   
Sbjct: 61  GFDVLRRIRQNTQ---VPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQ 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++++ED     +     +   GY   +  +G +  ++A+++  D+I++DI L  ++
Sbjct: 1   MKGKILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIMLPSMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI ++++E S   +IPVI +TA     D+      G + Y++KP  +   +  I+  +
Sbjct: 61  GIEILRRLRESS---DIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVAL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|237721900|ref|ZP_04552381.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448769|gb|EEO54560.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1372

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  L   NG E  + A    PD+++ DI +  + G+ + 
Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED     IPVI +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227


>gi|227821648|ref|YP_002825618.1| putative response regulator in two-component regulatory system
           [Sinorhizobium fredii NGR234]
 gi|227340647|gb|ACP24865.1| putative response regulator in two-component regulatory system
           [Sinorhizobium fredii NGR234]
          Length = 149

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 96/123 (78%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+VMIVEDNELNMKLFRDLIE SGY  +QTRNGMEALELAR+H+PD+I+MDIQL E+S
Sbjct: 27  MPKQVMIVEDNELNMKLFRDLIEASGYATIQTRNGMEALELARKHRPDLILMDIQLPEVS 86

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED EL  IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ETIK Y+
Sbjct: 87  GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 146

Query: 121 GEA 123
           G+A
Sbjct: 147 GDA 149


>gi|160884678|ref|ZP_02065681.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483]
 gi|156109713|gb|EDO11458.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483]
          Length = 1372

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  L   NG E  + A    PD+++ DI +  + G+ + 
Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED     IPVI +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227


>gi|94263690|ref|ZP_01287498.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455889|gb|EAT06048.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 303

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++ V+D+ +N+K+  D++    Y  +    G +AL +A    PD+I++DI + E+ G 
Sbjct: 8   ATILAVDDSPMNIKILHDILNQD-YRVIFATGGADALTIAADSLPDLILLDIMMPEMDGY 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+  ++KED   Q IP+I VTA   + DE +    G   YI+KP++ ++    +K ++
Sbjct: 67  EVCHRLKEDPRTQRIPIIFVTAMTDQEDEAKGLDLGAIDYITKPVNQAVVKARVKNHL 124


>gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB]
 gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1028

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 67/118 (56%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VED  +N ++  +L+   G  A    NG  A+EL +    D+++MD+Q+ E+ GL
Sbjct: 909  RHLLVVEDEAINREIALELLGEFGITADTAENGRHAVELIKIQHYDLVLMDMQMPEMDGL 968

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T++I+   E   +P+IA+TA A   D ER  K G   ++SKP+        + +Y+
Sbjct: 969  EATRRIRALPEQNAVPIIAMTANAFAEDRERCIKAGMNDFLSKPVEPDDLKMLLLRYL 1026


>gi|332885780|gb|EGK06026.1| hypothetical protein HMPREF9456_02290 [Dysgonomonas mossii DSM 22836]
          Length = 1335

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++I++D E         +    +  +   +G++ L++A    PD+II D+ +  + GL 
Sbjct: 1078 KILIIDDEEEIRDFLSQELGEL-FKVITAVDGVDGLQVAIDRLPDLIISDVMMPNMDGLN 1136

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K++K ++ +  IP+I +T+ A   D  +    G +AY+SKP ++   + TI   I
Sbjct: 1137 LLKRLKNNNNVSHIPIILLTSKAEYQDRIQGLDRGADAYLSKPFNIEELIVTINNLI 1193


>gi|237712214|ref|ZP_04542695.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|237726360|ref|ZP_04556841.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229434886|gb|EEO44963.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|229453535|gb|EEO59256.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 379

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N+ L + L+    +  +   NG EAL  A   +PD+I++D+ + E++G E
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K D E Q IP+I +TA     D  +  K G   +ISKP +    +  +
Sbjct: 75  VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127


>gi|225376447|ref|ZP_03753668.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
 gi|225211823|gb|EEG94177.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
          Length = 228

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++ +D +  +   +  +   GY   +  NG EALE+ ++    +++MDI + E+ G
Sbjct: 1   MYRILVCDDEKDIVSALKIYLMADGYQVFEAYNGREALEILKKEDIHLVLMDIMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +    +I+E   +  +PVI +TA +   D+      G + Y++KP +       +K  + 
Sbjct: 61  ITAMLKIRE---VSNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNTVELQARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|212691339|ref|ZP_03299467.1| hypothetical protein BACDOR_00831 [Bacteroides dorei DSM 17855]
 gi|212666092|gb|EEB26664.1| hypothetical protein BACDOR_00831 [Bacteroides dorei DSM 17855]
          Length = 379

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N+ L + L+    +  +   NG EAL  A   +PD+I++D+ + E++G E
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K D E Q IP+I +TA     D  +  K G   +ISKP +    +  +
Sbjct: 75  VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127


>gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 223

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           MIV+D++   +L    ++  GY   +  NG+EAL    + +PD+II+DI + E+ GL   
Sbjct: 1   MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKSQPDLIILDIMMPEMDGLSFC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            Q+++ S+   +P++ V+A     D+      G + Y+SKP +       +K  +  A
Sbjct: 61  TQVRKSSQ---VPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRA 115


>gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 2   LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K+   V++V+D E   ++   +++   Y  L   NG  ALE  ++  PD++I+D+ L  
Sbjct: 1   MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G E+ + I+E     ++P++ ++A     D+      G + Y+ KP S       +K 
Sbjct: 61  IDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKA 117

Query: 119 YIGEA 123
            +  +
Sbjct: 118 LLRRS 122


>gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 231

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D+E  +KL    +    +  +   +G EAL    ++  D I++DI + ++ 
Sbjct: 1   MPKTILVVDDDEEIVKLITKSLRYEQFAIISACSGKEALSALEENHIDFIVLDIVMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + I+       +P++ ++A     D+    + G + Y++KP S+   +  IK + 
Sbjct: 61  GLDVCRSIRNS---YNVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHF 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|261253028|ref|ZP_05945601.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260936419|gb|EEX92408.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 769

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 74/122 (60%), Gaps = 2/122 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ EDN  N  + R++ +  G       NG+EALE+A+Q++ D+I MDI + ++ G+
Sbjct: 489 ARILVAEDNRANQLVIREMFKRVGSQIDIAENGLEALEMAQQYQYDLIFMDISMPKMDGM 548

Query: 63  EITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + I+  ED     IP+IA+TA ++ GD+E+    G + Y+SKP+ LS  ++ I  ++
Sbjct: 549 TACRAIRALEDEATATIPIIALTAHSLAGDKEKFLASGMDDYLSKPLRLSQLVDKINLFL 608

Query: 121 GE 122
            E
Sbjct: 609 DE 610


>gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
 gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
          Length = 231

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 70/124 (56%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+++ ++I++D++  ++L    +   GY   +  +G EAL +   ++ D++I+DI + + 
Sbjct: 1   MMERNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLYQIDLMILDIMMPKR 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +GLE+ +Q++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  
Sbjct: 61  NGLEVCQQVREEN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKAL 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|218889743|ref|YP_002438607.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58]
 gi|218769966|emb|CAW25728.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58]
          Length = 795

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VEDN +N  + R ++   GY      NG EALEL  + +PD +++D Q+  + G  
Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 728

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + I+      E+PV+A+TA +  GD ER    G   Y++KP+        +  ++
Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785


>gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI]
 gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 230

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
 gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED E    L +D +E SG+       G   LE A     D+II+D+ L E+ G
Sbjct: 1   MSKILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDYDLIILDLMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I +Q++++   + IP+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FDICRQVRQE---KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHME 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254242660|ref|ZP_04935982.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192]
 gi|126196038|gb|EAZ60101.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192]
          Length = 795

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VEDN +N  + R ++   GY      NG EALEL  + +PD +++D Q+  + G  
Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 728

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + I+      E+PV+A+TA +  GD ER    G   Y++KP+        +  ++
Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785


>gi|13473197|ref|NP_104764.1| phosphate regulatory protein, PhoB [Mesorhizobium loti MAFF303099]
 gi|260461553|ref|ZP_05809800.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319781154|ref|YP_004140630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|14023945|dbj|BAB50550.1| phosphate regulatory protein; PhoB [Mesorhizobium loti MAFF303099]
 gi|259032623|gb|EEW33887.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317167042|gb|ADV10580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 64/120 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++M+VED E    L R  +E+ GY       G EA    +++ PD++++D  +  +SG+E
Sbjct: 5   RIMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEAEIRLQENVPDLLVLDWMVPAVSGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   E + +P+I +TA   + D  R    G + Y+ KP S   FM  +K  +  A
Sbjct: 65  LCRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALLRRA 124


>gi|309810882|ref|ZP_07704683.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
 gi|308435188|gb|EFP59019.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V++V+D+    +  R  ++  G        G++AL       PD++++D+ L ++ 
Sbjct: 1   MSERVLVVDDDPTIARTLRINLKARGLDVETVGCGLDALSTCADAMPDLVVLDLGLPDLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +Q+++ S    +PVI ++A     D+      G + Y++KP  +   M  ++  +
Sbjct: 61  GVDVLRQLRQSS---SVPVIVLSARQEADDKVEALDEGADDYVTKPFGIEELMARVRAAL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++++ED      L RD     G+  ++  +G E L     +K D++I+DI + ++ 
Sbjct: 5   MPKNILLIEDETRIRFLLRDYFLKEGFNIIEAADGDEGLNFFISNKIDLVILDIMMPKVD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + + I++   +  +PVI +TA   + D+    + G + YI+KP S  I +  +K  +
Sbjct: 65  GITVLEMIRK---VSTVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALL 121

Query: 121 GE 122
             
Sbjct: 122 KR 123


>gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces
            ambofaciens ATCC 23877]
          Length = 1331

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G+  L   NG   +E    H    +++MD+ + E+ G
Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIETLIDHPEVALVLMDVMMPEMDG 1270

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+      E+P+IAVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329



 Score = 39.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 46   KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG----GCEA 101
                +++++ +++       + ++ DS L  +PV+  +        E   +     G   
Sbjct: 1104 PCHCVVLELGMRDDEASRFLRALRGDSALASVPVLVHSGHRADAALEESLRSGTQDGALE 1163

Query: 102  YISKPISLSIFMETIKKYI 120
            ++S   SL    E I  ++
Sbjct: 1164 FLS---SLDELRERIALHL 1179


>gi|46203763|ref|ZP_00051012.2| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum
           MS-1]
          Length = 126

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/122 (68%), Positives = 107/122 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  L+T NG+EA+ELAR H P++I+MDIQL E+S
Sbjct: 1   MKKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARAHHPNLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D +L++IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T++KYI
Sbjct: 61  GLEVTKWLKDDDDLRDIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRKYI 120

Query: 121 GE 122
           G+
Sbjct: 121 GD 122


>gi|310827155|ref|YP_003959512.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
 gi|308738889|gb|ADO36549.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
          Length = 231

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M  K  V++VED +        +++ + Y  ++ R+G EALEL     PD+I++D+ L +
Sbjct: 1   MSHKALVLLVEDEKGIRNFISTVLDVNNYRVVEARDGKEALELFTSRCPDLILLDLGLPD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G+E+ K I+       IP+I V+A   + ++      G + YI+KP   S  +  I+ 
Sbjct: 61  MDGIEVLKTIR---GWSGIPIIVVSARGHEREKVEALDLGADDYITKPFGTSELLARIRT 117

Query: 119 YIG 121
            + 
Sbjct: 118 AMR 120


>gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus
           ATCC 53653]
          Length = 290

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L    +   G+      +G EA+   R+ +PD +++D+ L ++ GL 
Sbjct: 66  RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVMLPDMDGLT 125

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   EL E+PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 126 VLGRLRR--ELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRS 183


>gi|256783375|ref|ZP_05521806.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1331

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G+  L   NG   +E    H    +++MD+ + E+ G
Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1270

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+      E+P+IAVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329



 Score = 38.2 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 46   KPDVIIMDIQLQEISGL--EITKQIKEDSELQEIPVIAVTAF---AMKGDEERIRKGGCE 100
                +++++ +    G      + ++ DS L  +PV+  +     A   ++ R R  G  
Sbjct: 1104 PCHCVVLELGMP--DGEASRFLRALRGDSALASVPVLVHSGHRADAAVAEDLRSRAAGGT 1161

Query: 101  -AYISKPISLSIFMETIKKYI 120
              +++    L    E I  ++
Sbjct: 1162 LEFLA---GLDELRERIALHL 1179


>gi|107103492|ref|ZP_01367410.1| hypothetical protein PaerPA_01004562 [Pseudomonas aeruginosa PACS2]
          Length = 777

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VEDN +N  + R ++   GY      NG EALEL  + +PD +++D Q+  + G  
Sbjct: 651 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 710

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + I+      E+PV+A+TA +  GD ER    G   Y++KP+        +  ++
Sbjct: 711 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 767


>gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1311

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++ +DN         L+   G+      +G  AL  A+ H P +++ D+ +  + G
Sbjct: 639 SARILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHPPHLVLTDVMMPRLDG 698

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + + +K   + Q +PVI ++A A +       + G + Y+ KP S    +  +   +
Sbjct: 699 FGLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARL 757



 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 60/110 (54%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VED+        D +E  G+     R+G+E +E     +PDV ++D+ L  I G 
Sbjct: 1164 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLALRPDVALIDVGLPGIDGY 1223

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
            E+ ++++     +++ ++A+T +       + ++ G + +++KPI++   
Sbjct: 1224 EVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1273


>gi|288941099|ref|YP_003443339.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896471|gb|ADC62307.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1650

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 70/121 (57%), Gaps = 2/121 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
            +V++V+D+E+N ++   ++   G       +G +AL     H    D+++MD+Q+  + G
Sbjct: 1304 RVLVVDDSEINQEVASGILAKHGAQVSVASDGEDALVWLDAHPEAVDIVLMDVQMPRLDG 1363

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T+++++D   +++PVIA+TA A +  +E  R+ G   +I+KP  ++  +  I+++ G
Sbjct: 1364 YAATRRLRQDPRQRDLPVIALTAGAFQSMQEAAREAGMNDFIAKPFDVAELIACIRQWTG 1423

Query: 122  E 122
             
Sbjct: 1424 R 1424


>gi|260642486|ref|ZP_05416052.2| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260621843|gb|EEX44714.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1459

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN        +++  + Y  L+  NG E L+ A+Q+ PD+II D+ +  + GL++
Sbjct: 1198 ILIVEDNNELRHFLWNILSET-YTVLEAANGKEGLKYAQQYIPDLIISDVMMPIMDGLDM 1256

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K IK D     IP+I ++A +   D     + G + YI+KP S +     I   + +
Sbjct: 1257 VKAIKADHNTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTKILSLLRQ 1314


>gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 231

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D    ++L    +   GY   +  NG++AL +  + K  ++I+DI +  I GL++
Sbjct: 4   VLIVDDEAEIIELMEVYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+++     IP+I V+A   + D+ +    G + YI KP S    +  +K  I  
Sbjct: 64  CMKIRKE---YNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118


>gi|160896640|ref|YP_001562222.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
 gi|160362224|gb|ABX33837.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
          Length = 316

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV++V+D   N  +   +I+      L    G EAL LA QH+PD+I++DI++  + G 
Sbjct: 21  QKVLVVDDVPDNATVICQVIKDL-CGPLVAYTGEEALALAHQHQPDLILLDIRMPGMDGF 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K D +   IP+I +TA      EE     G   +++KP   ++    ++ ++
Sbjct: 80  EVCRRLKADLQTAHIPIIFLTALTEPHCEELGLNLGAVDFVTKPFRPAVLKARVRTHL 137


>gi|115375839|ref|ZP_01463090.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
            DW4/3-1]
 gi|310820280|ref|YP_003952638.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367149|gb|EAU66133.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
            DW4/3-1]
 gi|309393352|gb|ADO70811.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1171

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 72/126 (57%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56
            +++++VED+  N+     ++E  G      RNG EALE   +         D+++MDI +
Sbjct: 1046 RRILVVEDDVRNVFALSSVLEPRGAKVEIARNGREALEALTRSLAQPAKSVDLVLMDIMM 1105

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ G+   ++I++ SE  ++P+IA+TA AM+ D+E+    G   YI+KP+ +   +  I
Sbjct: 1106 PEMDGITAMREIRKRSEWSKLPIIALTAKAMRDDQEKCLAAGANDYIAKPLDVEKLLSLI 1165

Query: 117  KKYIGE 122
            + ++ +
Sbjct: 1166 RVWMPK 1171



 Score = 82.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 53/94 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+++ED+E   +  + L+E+     +      EAL+  +QH  D ++MD+ L ++SG 
Sbjct: 900 RRVLVLEDDERQRESLQKLLESEDVQIVGVATAGEALQQLQQHTFDCMVMDLHLPDLSGD 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
           E+ +++    ++   PVI  T  ++  DEE+  +
Sbjct: 960 ELLEKMALQEDVSFPPVIVYTGHSLSRDEEQRLR 993



 Score = 82.9 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 10/125 (8%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ ED+     + RDL    G++ + T  G  AL  A  ++P  I++D+ L + SGL +
Sbjct: 780 ILVAEDDMRFAAILRDLARELGFLCIVTGTGGAALAAALSYRPSAILLDMNLPDHSGLAV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY----- 119
             Q+K +++ + IPV  V+   +        + G   Y  KP+     +E  +K      
Sbjct: 840 LDQLKRNAKTRHIPVHVVS---VADYSREALELGAVGYALKPVKREQLVEAFRKLETKFS 896

Query: 120 --IGE 122
             +  
Sbjct: 897 QGLRR 901


>gi|114769510|ref|ZP_01447136.1| Response regulator [alpha proteobacterium HTCC2255]
 gi|114550427|gb|EAU53308.1| Response regulator [alpha proteobacterium HTCC2255]
          Length = 195

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED    M+L    +   GY  L+  +G + L L +++  D++++D  L  ISGLE+
Sbjct: 11  ILIVEDEPSQMELLSFNLNAEGYDVLKAEDGEKGLLLFKENNIDLVLLDWMLPNISGLEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +Q++   +  +  +I +TA   + D+ R    G + YI KP S+   +  ++  I 
Sbjct: 71  CRQMRRSKDSSDCHLIMLTARGEEEDKVRGLDMGADDYIVKPYSIKELLARVRSGIR 127


>gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
 gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
          Length = 1340

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     +++  G   +   +G   ++  R +   D+++MD+ + E+ G
Sbjct: 1215 RTVLVVDDDVRNVFAITSILDLYGLRVIHAADGRMGIDALRSNPGIDLVLMDVMMPEMDG 1274

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
               T  I+   +  ++P+IAVTA AM  D ++    G   Y++KP+ +   +  I+ 
Sbjct: 1275 YATTTAIRAMPQFADLPIIAVTAKAMPDDRQKCLDAGATDYVTKPVDIEELLACIRA 1331


>gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
 gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED +   ++    +    Y  +   +   A++   + KP +I++D  L   S
Sbjct: 1   MNEKILIVEDEKAIREMIALFLLQQNYQVIDAEDYQSAVKKLDE-KPKLILLDWMLPGRS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  + +K+  E  +IP++ +TA + + D       G + Y++KP S  + +  I+  +
Sbjct: 60  GIQFIQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|315921776|ref|ZP_07918016.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313695651|gb|EFS32486.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1315

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN       +  +       +   +G+EAL+L R H PD+I+ D+ +  ++G E+
Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             K IKED  +  IP+I +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179

Query: 123  A 123
            +
Sbjct: 1180 S 1180


>gi|299146852|ref|ZP_07039920.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298517343|gb|EFI41224.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1315

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN       +  +       +   +G+EAL+L R H PD+I+ D+ +  ++G E+
Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             K IKED  +  IP+I +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179

Query: 123  A 123
            +
Sbjct: 1180 S 1180


>gi|260173505|ref|ZP_05759917.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1273

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN       +  +       +   +G+EAL+L R H PD+I+ D+ +  ++G E+
Sbjct: 1018 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1077

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             K IKED  +  IP+I +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 1078 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1137

Query: 123  A 123
            +
Sbjct: 1138 S 1138


>gi|237723233|ref|ZP_04553714.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229447755|gb|EEO53546.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1315

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN       +  +       +   +G+EAL+L R H PD+I+ D+ +  ++G E+
Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             K IKED  +  IP+I +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179

Query: 123  A 123
            +
Sbjct: 1180 S 1180


>gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL      K D++I+DI +  + G +
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 73  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128


>gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
 gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 69/120 (57%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D     KL RD +E  GY  L+  +GMEA+++   +    +II+D+ +  + G 
Sbjct: 14  KILVVDDESRMRKLVRDFLEREGYAVLEAGDGMEAMDIFYEEKDIALIILDVMMPHMDGW 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++I+++S+   +P+I +TA + + DE +  + G + YISKP S  I +  +   +  
Sbjct: 74  QTCREIRKESK---VPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRR 130


>gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1492

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++ EDN  N  L   L+E  GY   +   NG EAL        D+I+MD Q+  + G
Sbjct: 1368 ARILVAEDNIDNRDLLVMLLEDIGYDNVVTVENGQEALNKINAELFDLILMDCQMPIVDG 1427

Query: 62   LEITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             E T++++ ++S    IPVIA+TA AMKGD ++    G   YI+KP +       + K+
Sbjct: 1428 YEATRKLRKQNSRNSSIPVIAITANAMKGDRDKCLAAGMSDYITKPFASDDLERKLVKW 1486


>gi|171910558|ref|ZP_02926028.1| putative phytochrome sensor protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 472

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED  +        +E +G+      +G E +   R+  PD+I++DI + +++G+
Sbjct: 33  ARILVVEDANIIALAMSYALEGAGFHVELAADGEECIVKVREDLPDLILLDIMMPKMNGI 92

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E  K ++ D + +++PVI  +A   K + +   + G   Y+ KP + +  +  +   +G
Sbjct: 93  EALKILRADEKTKDLPVIVCSAKDFKTERQAAAELGALDYLIKPFNPADLVRKVSAALG 151


>gi|160886361|ref|ZP_02067364.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483]
 gi|293372788|ref|ZP_06619169.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|156108246|gb|EDO09991.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483]
 gi|292632297|gb|EFF50894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1315

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN       +  +       +   +G+EAL+L R H PD+I+ D+ +  ++G E+
Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             K IKED  +  IP+I +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179

Query: 123  A 123
            +
Sbjct: 1180 S 1180


>gi|21225602|ref|NP_631381.1| two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
 gi|8246822|emb|CAB92873.1| putative two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
          Length = 1331

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G+  L   NG   +E    H    +++MD+ + E+ G
Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1270

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+      E+P+IAVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329



 Score = 37.8 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 46   KPDVIIMDIQLQEISGL--EITKQIKEDSELQEIPVIAVTAF---AMKGDEERIRKGGCE 100
                +++++ +    G      + ++ DS L  +PV+  +     A   ++ R R  G  
Sbjct: 1104 PCHCVVLELGMP--DGEASRFLRALRGDSALASVPVLVHSGHRADAAVAEDLRSRAAGGT 1161

Query: 101  -AYISKPISLSIFMETIKKYI 120
              +++    L    E I  ++
Sbjct: 1162 LEFLA---GLDELRERIALHL 1179


>gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL      K D++I+DI +  + G +
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 73  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128


>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
          Length = 1266

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 72/113 (63%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++ EDN  N ++   ++E +G +     NG EA++  R+ + D ++MDIQ+  + G E
Sbjct: 919  RVLVAEDNITNQEIALAILEEAGLVVKIVNNGKEAVDAVRESQFDALLMDIQMPVMDGYE 978

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             T+QI++D+E +++P+IA+TA AMKGDEE   K G   YI KP+S  +    +
Sbjct: 979  ATRQIRKDAEFKDLPIIAMTAHAMKGDEEECLKAGMNGYIPKPVSQDMLFNVL 1031



 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59
           V++V+D + +  +   ++E+ G+      +   +L+  R+     +  D+++MD  +  +
Sbjct: 771 VLVVDDCKDSQNIMEKMLESFGFKVESISSAQASLQRLREDETRENPIDLVMMDWLMPGL 830

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            G+E +  I++D +L  +P+I +TAF  +       K G   +++KPI  S   + I
Sbjct: 831 DGIEASSIIRDDLKL-NVPIIMMTAFGNETQMLYAEKVGVNGFLTKPICQSTLFDAI 886


>gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 246

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+++  +  PD+I+MD+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++     +PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQNGVA--VPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 232

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS 60
           + KV+I+ED E         ++ +G+  L+   G EAL +       D+ ++D+ +  + 
Sbjct: 1   MSKVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+E +E   I +I +TA   + D+      G + ++SKP S +  +  I+  +
Sbjct: 61  GFEVCRRIRETNE--RIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           + K+++V+D++   +L R  +E +G    ++  NG +AL L    K D++I+DI + E+ 
Sbjct: 1   MAKILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKVDMVILDIMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++++      ++P++ +TA        +  + G + Y+ KP   +  +  +K  +
Sbjct: 61  GWDLCRELR---RYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|239502003|ref|ZP_04661313.1| osmolarity response regulator [Acinetobacter baumannii AB900]
          Length = 254

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +  +   L ++    +I++D  L    GL 
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +   + P+I +TA     D     + G + Y+ KP + +  +  I+  +  
Sbjct: 82  ICRRLRQTNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138


>gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 228

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +   +     ++  GY     +NG + LELA     D I++D+ L E++G
Sbjct: 1   MSRILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDWDAILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++   ++  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  LEVCRRVRQ---VKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 224

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     ++    ++  GY   Q  NG +ALE     + D++I+DI + E+ GL 
Sbjct: 2   KILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPEMDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +   ++E +    +PV+ +TA     D+ +    G + Y+ KP   S  +  ++  +  +
Sbjct: 62  LVHTLREKNVT--VPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRS 119


>gi|226953701|ref|ZP_03824165.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
 gi|294651821|ref|ZP_06729115.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835573|gb|EEH67956.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
 gi|292822285|gb|EFF81194.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 254

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +  +   L ++    +I++D  L    GL 
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +   + P+I +TA     D     + G + Y+ KP + +  +  I+  +  
Sbjct: 82  ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138


>gi|170693022|ref|ZP_02884183.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170142020|gb|EDT10187.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 246

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L    +E +G       NG +      Q  PD+I++D+ +    GL 
Sbjct: 6   HVLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   + + +PV+ +TA   + D     + G + Y+ KP ++   +  I+  +  A
Sbjct: 66  LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124


>gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 231

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G EAL++   ++ +++I+DI + + +
Sbjct: 1   MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIELMILDIMMPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 61  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|85860311|ref|YP_462513.1| response regulator receiver domain-containing protein [Syntrophus
           aciditrophicus SB]
 gi|85723402|gb|ABC78345.1| response regulator receiver domain with sensory domain [Syntrophus
           aciditrophicus SB]
          Length = 596

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 62/116 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D      +   L+++  Y      NG EALELA++  PD+I++D+ +  + G E
Sbjct: 19  RILIVDDLPQERWMLGALLKSYDYELSYATNGHEALELAKKINPDLILLDVMMPGMDGFE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + ++I++   + E+P++ VTA        +  + G + +ISKP   +     ++  
Sbjct: 79  VCRRIRKTPLIAEVPIMMVTALNEAEVRRKGVEIGADDFISKPFDRAELQARVRNI 134


>gi|83646377|ref|YP_434812.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83634420|gb|ABC30387.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 841

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 69/117 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+ LN+ +    +E+ GY  L   NG++AL++A +H+P +I++D+ + E++G E
Sbjct: 23  TVLIVDDSPLNLDVAVACLESRGYRTLSAENGVQALQIAMEHQPSLILLDVMMPEMNGFE 82

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K+ S   +IPVI +TA +    ++     G   Y++KP  +      +  +I
Sbjct: 83  TCRKLKKLSGCDDIPVIFMTALSDVKSKKAGFDAGGVDYVTKPFQVEELAARVHTHI 139



 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   ++  + ++    Y  L   N  +A E+  + +  VI+ D+Q+   SG++ 
Sbjct: 720 VLVVDDDVNILRSIKRILRDEAYEVLVASNTEDAYEVLARREVAVIVSDLQMPGESGVQF 779

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETI 116
             +IK          I +T        E     G    YISKP   +  +ET+
Sbjct: 780 FSKIKTMHPRSLR--ILLTGHGSSESLEGAINQGEIYRYISKPWDNAHLLETL 830


>gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M++ ++ V+D+   + L R+     S +  +    G EAL++      D +I+DI L  +
Sbjct: 11  MMRTILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSVDFVILDIMLPGL 70

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E  ++I++      +P++ ++A   + D+    + G + Y++KP S    +  +K +
Sbjct: 71  DGMETCRRIRQQ---HTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAH 127

Query: 120 IGE 122
              
Sbjct: 128 FRR 130


>gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
 gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
          Length = 1963

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E +G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1843 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1902

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  ++K++ 
Sbjct: 1903 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLR 1961


>gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 226

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED          L+E  G+  +   +G   LE   ++  D++++D+ L  +SG
Sbjct: 1   MTRILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++ +S    +P+I +TA   + D+    + G + Y++KP S    +  I   + 
Sbjct: 61  VEVCRELRRES---SVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295675889|ref|YP_003604413.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295435732|gb|ADG14902.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 241

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     L RD +   G       +         + +PD+I++D+ +  + 
Sbjct: 1   MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   ++++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I+ED+   ++  +  +   GY      +G   L LA+  +PD++++D+ L  + 
Sbjct: 1   MAEKIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLG 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I++     E+P++ ++A   +GD+    + G + Y+ KP  L   +  I   +
Sbjct: 61  GLEVVREIRKTD--PELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 227

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D    ++     ++  G+     ++GM A+ L +Q +P V+I+D+ +  + G E
Sbjct: 8   RILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLMKQFQPHVVILDVMMPGMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +K+    + + VI +TA     D  +    G + Y+ KP S    +  I   I 
Sbjct: 68  VCRMLKK---TENVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARIR 122


>gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 250

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  ALE       D++++D+ L  + G
Sbjct: 26  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDG 85

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 86  LEVARRLRSEGHT--VPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 143

Query: 122 E 122
            
Sbjct: 144 R 144


>gi|255320247|ref|ZP_05361432.1| protein PetR [Acinetobacter radioresistens SK82]
 gi|262380462|ref|ZP_06073616.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302686|gb|EET81918.1| protein PetR [Acinetobacter radioresistens SK82]
 gi|262297908|gb|EEY85823.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 254

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +  +   L ++    +I++D  L    GL 
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +   +IP+I +TA     D     + G + Y+ KP + +  +  I+  +  
Sbjct: 82  ICRRLRQSNI--DIPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138


>gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 249

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    +L    +E +GY       G    E AR + PD++I+D+ L  + G
Sbjct: 17  MPNILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLMLPGLDG 76

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + ++ DS    +P++ +TA     D+    + G + Y++KP    + +  ++  + 
Sbjct: 77  LQVCRLLRADSAG--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 134

Query: 122 EA 123
            +
Sbjct: 135 RS 136


>gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED ++  ++ +D +   GY  L+  +G EAL +  +++  +II+DI L E+ 
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++ S    +P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117


>gi|284034649|ref|YP_003384580.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283813942|gb|ADB35781.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D    ++  +  ++   Y       G  AL++A QH PD++I+D+ L ++ G
Sbjct: 1   MTRVLVVDDEPQIVRALQINLKARRYEVHVAGTGTAALQVAAQHPPDLVILDLGLPDLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + ++      E P++ ++      D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  IEVIRGLR---GWTEAPILVLSGRTDSTDKVEALDAGADDYVTKPFGIDELLARMRAALR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|226953341|ref|ZP_03823805.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|294651956|ref|ZP_06729245.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835879|gb|EEH68262.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|292822188|gb|EFF81102.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 236

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63
           ++IV+D     ++    ++ +G+  LQ  +  +A ++    +P +I++D  L   +SG++
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K D  L EIPVI +TA   +  + +    G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125


>gi|330997905|ref|ZP_08321739.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329569509|gb|EGG51279.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1370

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VED++       + ++   +  ++ R+G+E    AR   PD+I+ D+ +  + G+
Sbjct: 1112 KKILVVEDHDEFRHFLVEQLQKD-FCVVEARDGVEGELAARTELPDLIVSDLMMPRMDGM 1170

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ +++K D +   IP I +TA +         + G ++YISKP +  +    I++ I +
Sbjct: 1171 ELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIEQ 1230


>gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D +  + + +  +E  GY      N  EAL+    + PD++++DI +  ++GL+
Sbjct: 6   KILIVDDEQSILDMLKLQLEFEGYSVYTAGNAAEALDKL-SYSPDIVLLDINMDGMNGLD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   I+   +    P+I +TA   + D+      G + YI+KP S++  +  I  ++  
Sbjct: 65  LCVSIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRR 120


>gi|289767250|ref|ZP_06526628.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
 gi|289697449|gb|EFD64878.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1333

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G+  L   NG   +E    H    +++MD+ + E+ G
Sbjct: 1213 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1272

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+      E+P+IAVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1273 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1331



 Score = 37.8 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 46   KPDVIIMDIQLQEISGL--EITKQIKEDSELQEIPVIAVTAF---AMKGDEERIRKGGCE 100
                +++++ +    G      + ++ DS L  +PV+  +     A   ++ R R  G  
Sbjct: 1106 PCHCVVLELGMP--DGEASRFLRALRGDSALASVPVLVHSGHRADAAVAEDLRSRAAGGT 1163

Query: 101  -AYISKPISLSIFMETIKKYI 120
              +++    L    E I  ++
Sbjct: 1164 LEFLA---GLDELRERIALHL 1181


>gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 226

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E        ++E  G+      +G  AL    +   D+I++D+ L  +SG
Sbjct: 1   MTRLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + ++  S    +PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRTLRARS---TVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 234

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 74  CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKR 128


>gi|220926141|ref|YP_002501443.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219950748|gb|ACL61140.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1839

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G   L    G EA+ +  +     +++MDI + E+ G
Sbjct: 1719 RTVLLVDDDARNIFALSSVLERRGMRVLTATTGREAISIIEERSDIAIVLMDIMMPEMDG 1778

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E  + I+ +   + +P++A+TA AMKGD E+  + G   Y++KP++    +  ++ ++ 
Sbjct: 1779 YETMQVIRANPAFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRLWLH 1838

Query: 122  E 122
             
Sbjct: 1839 R 1839



 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED+    ++   L   +G+  L    G +AL LAR++ P  + +D+ L ++ G  + 
Sbjct: 1454 LIVEDDPHYTRVLMQLARDTGFKVLTANRGADALALARRYHPTAVSLDVFLPDMLGWTVL 1513

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
              +K+D   + IPV  VT   +  D       G  A++SKP         ++ IK +
Sbjct: 1514 SHLKQDPATRHIPVQIVT---LDEDRRHGLARGAFAFLSKPTRPEDLGSALQRIKSF 1567



 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN         L+       +    G  AL   R+H  D +++D++L ++SG 
Sbjct: 1573 RRLLIVEDNPAERLGVSTLLGHQDIDIVTAETGAGALAALREHAIDCVVLDLKLPDMSGF 1632

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ ++++ED  L ++PV+  T  A+  +E+        + + K + S    ++
Sbjct: 1633 EVLERLREDDSLADLPVVVFTGRALSPEEDARLHALARSVVVKGVESPERLLD 1685


>gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
 gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED     +L RD +E + +      NG+  LE A   +  +I++D+ L ++ G
Sbjct: 1   MSKILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEYSLILLDLMLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI +QI+E    ++IP+I VTA     D+ R    G + Y++KP S S  +  +K +I 
Sbjct: 61  FEICRQIREK---KDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254236867|ref|ZP_04930190.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719]
 gi|313109414|ref|ZP_07795374.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016]
 gi|126168798|gb|EAZ54309.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719]
 gi|310881876|gb|EFQ40470.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016]
          Length = 795

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VEDN +N  + R ++   GY      NG EALEL  + +PD +++D Q+  + G  
Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 728

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + I+      E+PV+A+TA +  GD ER    G   Y++KP+        +  ++
Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785


>gi|15599169|ref|NP_252663.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1]
 gi|9950164|gb|AAG07361.1|AE004815_5 Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1]
          Length = 795

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VEDN +N  + R ++   GY      NG EALEL  + +PD +++D Q+  + G  
Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 728

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + I+      E+PV+A+TA +  GD ER    G   Y++KP+        +  ++
Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785


>gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E        ++   G+      NG +AL    ++  D++++D+ L  +SG
Sbjct: 1   MTRVLIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K ++  S    +PVI VTA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TDVCKALRSRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 233

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D++   ++   ++   G+ A+   NG  A E   +  PD++++D+ L  ++G+E
Sbjct: 8   TILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRSTPDLVLLDLMLPGMNGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +QI+  S    +P+I +TA +   D  +  + G + YI+KP   +  +  I+  + 
Sbjct: 68  VCQQIRRSS---NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLR 122


>gi|153870115|ref|ZP_01999582.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
 gi|152073419|gb|EDN70418.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
          Length = 396

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
            V+IV+D+ +N+++  + +    Y   +   G +AL+         +I++DI + ++SG 
Sbjct: 251 HVLIVDDDPINLQILENQLRVENYAITRATTGHDALKALESGIPFAIILLDIMMPKMSGF 310

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ + I++     ++P+I +TA     D  +  + G   Y++KP S    +  IK +I
Sbjct: 311 EVCQIIRQTYPANQLPIIMLTAKNQVSDLVQGMQAGANDYLTKPFSKGELITRIKTHI 368


>gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Herminiimonas arsenicoxydans]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED    ++L    ++ +G+     +   EA +  +Q  P +I++D  L + SGL 
Sbjct: 7   TILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLR 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +I+ D +  E+P+I +TA +M+ D+      G + Y++KP S       I   +  
Sbjct: 67  LLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR 125


>gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 227

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    ++     ++  G+     ++G  A+ L +Q +P V+I+D+ +  + G E
Sbjct: 8   RVLLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVMMPGMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +K+      + VI +TA     D  +    G + Y+ KP S    +  I   + 
Sbjct: 68  VCRMLKKME---NVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVR 122


>gi|332885682|gb|EGK05928.1| hypothetical protein HMPREF9456_02192 [Dysgonomonas mossii DSM
           22836]
          Length = 377

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N+ L + L++  G+  +   +G  A+E+ R+  PD+I++DI +  + G E
Sbjct: 9   TILVVDDVMTNVLLLQVLLDKEGFNVVTANDGQAAIEIIRKDVPDLILLDINMPNMDGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K+ S  +EIPVI +TA        +  + G   YI+KP +    M  I   +
Sbjct: 69  VIREVKKYSLYREIPVIFLTAMNDVDSIVKGFRLGGSDYITKPFNKEELMARIVHQL 125


>gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 223

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +   ++    ++ + Y      +G +AL+     + D+II DI + +I G E
Sbjct: 2   KILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEYDLIITDIMMPKIDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + KQ++   +    PVI +TA     D+      G + YI KP      +  I+  +  
Sbjct: 62  LIKQLR--VKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRR 118


>gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEI 59
           ++KV+++ED E    + +  +E +GY  L   NG   LE    +  D+  I++DI L +I
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG  + K I+E S+   +PV+ +TA   + D+    + G + Y+ KP S    +  +K  
Sbjct: 61  SGWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LSR 120


>gi|307728990|ref|YP_003906214.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307583525|gb|ADN56923.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 241

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     L RD +   G       +         + +PD+I++D+ +  + 
Sbjct: 1   MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   ++++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 235

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED+E    + ++ +E  GY    +  G E LE  +++K  + ++DI L E+ 
Sbjct: 1   MKEKLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+  +E  +IP++ ++A     D+ +  K G + YI+KP SL+     ++ ++
Sbjct: 61  GFTLCKNIRWINE--DIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|89055622|ref|YP_511073.1| response regulator receiver modulated diguanylate cyclase
           [Jannaschia sp. CCS1]
 gi|88865171|gb|ABD56048.1| response regulator receiver modulated diguanylate cyclase
           [Jannaschia sp. CCS1]
          Length = 464

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 69/121 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ ++++V+D   N  + +  +  + Y   Q  NG  AL+ AR+ KPD+I++D+ + ++S
Sbjct: 1   MVGRILVVDDVATNRIVMKVKLTAACYSVDQAENGAAALKAARETKPDLILLDVMMPDMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + +K D E  +IPV+ +TA   +  +    + G + +++KP+     +  ++  +
Sbjct: 61  GLDVCRALKADPETADIPVVLITALFDQAAKMDGLEAGADDFLTKPVEEVTLLARVRSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 50.5 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 45  HKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103
           + PDV ++ + L + + GL +   ++     +   ++ +               G    +
Sbjct: 199 NDPDVFVISVDLAQRNEGLRLLSDLRSRPGTRHSAIVMILPEGDSERAAIALDLGANDVL 258

Query: 104 SKPISLSIFMETIKKYIGE 122
             P         I   +  
Sbjct: 259 HDPFDAQELAIRISAQLDR 277


>gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59
           ++ V+IV+D++    L    +E  GY  +Q  +G EAL     ++   D++I+D+ +  +
Sbjct: 1   MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALLAMATNEGTVDLVILDVMMPRL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G++  ++I+E      IP++ ++A +   D+      G + Y+ KP +       +K  
Sbjct: 61  NGIDTCRRIRE---TSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|312793945|ref|YP_004026868.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181085|gb|ADQ41255.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 234

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V +V+D +  ++L  + +   GY      NG   LE   + +PD++I+DI L +I G EI
Sbjct: 6   VYVVDDEKDILELVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIMLPDIDGYEI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+++S   ++P+I ++A   + D+    + G + YISKP SLS     IKK +  
Sbjct: 66  CKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120


>gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1434

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDNE N    +++    G+      NG+E +E   + + DVI+MD Q+ E+ G   
Sbjct: 1109 VLLVEDNETNRLFGKEIAHRQGWNCELAVNGVEGVEAVERGQFDVILMDCQMPEMDGFTA 1168

Query: 65   TKQIKEDSELQEI----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+QI++   L +I    P+IA+TA A++GD E     G + Y+SKP + +  +E +++ +
Sbjct: 1169 TRQIRQRESLGQISGRVPIIALTANAIRGDREACIAAGMDDYVSKPFTPAQLVEAVERVL 1228

Query: 121  GEA 123
              A
Sbjct: 1229 KRA 1231



 Score = 43.6 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 17/121 (14%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQEI 59
            V++V  N    +  +D+ E+         N +EA       LA Q   D++I+       
Sbjct: 963  VLLVGQNSEYCRFLQDVFESWSMQVETADNTLEAESAMSKALATQKPFDLLIL----PGN 1018

Query: 60   S---GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS-KPISLSIFMET 115
                  + T++++E   + ++PV  +    ++ D+E     G   ++  KP+  S  +  
Sbjct: 1019 DQAEEDDFTQRLREHPLIGDVPVFLM----VEADDELAPHPGLYQHLLRKPVGQSHLLNA 1074

Query: 116  I 116
            I
Sbjct: 1075 I 1075


>gi|304408275|ref|ZP_07389923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342744|gb|EFM08590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           + +V+D+E   +L    +   GY  +   +G EA EL +   PD+ ++D+ L  + G E+
Sbjct: 8   IAVVDDDEAIRQLVEAYLHKEGYRTVGLGSGEEAWELWKASPPDLWVLDLMLPGMDGYEL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +    E+P+I ++A   + D+    + G + Y+ KP S    +  +K+ +  
Sbjct: 68  CRRIRNE---AEVPIIMISARDTEVDKILGLELGSDDYMVKPFSPRELVARVKRQLQR 122


>gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + G
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 61  FQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|260172793|ref|ZP_05759205.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. D2]
 gi|315921079|ref|ZP_07917319.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694954|gb|EFS31789.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1330

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDN+       + ++ + Y      NG EALE+       ++I D+ + E+ G+E+ 
Sbjct: 1084 LIVEDNDDFRNFLINCLKGT-YQVFDAPNGKEALEILAHQSIQIVISDVMMPEMDGMELC 1142

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++IK D     IPVI +TA      E    K G + YI+KP +L I +  I+K +
Sbjct: 1143 RKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKIL 1197


>gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D     +L R  +E  G+  ++  +G EA +   +    + ++D+ + E+ G
Sbjct: 1   MATILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPVQLAVIDVMMPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+T+ ++E+   +++P++ +TA      + R  + G + Y+ KP +    +  ++  + 
Sbjct: 61  FELTRWLREE---RDVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295681071|ref|YP_003609645.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295440966|gb|ADG20134.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 246

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L    +E +G       NG +         PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRATLENGAPDLIVLDLMLPGEDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   + + +P++ +TA + + D     + G + Y++KP +    +  I+  +  A
Sbjct: 66  LCRELRA-GKFRAVPILMLTARSEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRA 124


>gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78]
 gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78]
          Length = 1928

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E +G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1808 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1867

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  ++K++ 
Sbjct: 1868 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLR 1926


>gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281399|gb|ABR89809.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 246

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L    +E +G       NG +   +  Q   D+I++D+ L    GL 
Sbjct: 6   HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   + + IPV+ +TA   + D     + G + Y+SKP ++      I+  +  A
Sbjct: 66  LCRELRA-GKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRA 124


>gi|187923123|ref|YP_001894765.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187714317|gb|ACD15541.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 241

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     L RD +   G       +         + +PD+I++D+ +  + 
Sbjct: 1   MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   ++++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +   KL    ++      ++  +G EAL L  + + D+II+DI L E  G  
Sbjct: 5   RILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQYDLIIVDIMLPEYDGWT 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I K+I+E S    +P++ +TA + + D+      G + Y++KP S+   +  +K  +  +
Sbjct: 65  ICKRIREKS---NVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKRS 121


>gi|319654045|ref|ZP_08008137.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394238|gb|EFV74984.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 226

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++V+D    + L    +   GY  ++  + ++A+     H  D+I++D+ + E+ G
Sbjct: 1   MKTILLVDDETRMLDLLALYLMPLGYYCVKKSSAIDAILYVESHSVDLILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+IK+    ++IP+I +TA + K D  +  K G + YI KP      +  I+  + 
Sbjct: 61  WTACKEIKK---FRDIPIIMLTARSEKPDIVKGLKMGADDYILKPFDEEELLARIEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 220

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 73/121 (60%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++++ED +   K+ ++ +  +GY  ++  +G EALEL  ++  D+ I+D+ + +I G
Sbjct: 1   MERILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFYENTFDLAILDVMVPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I ++I+++S+   IP+I +TA + + DE      G + YI+KP SL I +  +K  + 
Sbjct: 61  WTICRKIRKESK---IPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254492365|ref|ZP_05105537.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxidans DMS010]
 gi|224462257|gb|EEF78534.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxydans DMS010]
          Length = 994

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN  N+ + + L++          +G +AL L  ++  D+++MD Q+  + G E 
Sbjct: 865 VLVVEDNTTNIVIIQGLLKKFNVTTDVAEDGEQALNLLAKNNYDLVLMDCQMPVMDGFET 924

Query: 65  TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T+ I++   D   +EIP+IA+TA AM+GDE   R+ G + Y+SKPI   +  + + K++ 
Sbjct: 925 TRTIRKADSDILNREIPIIALTAQAMRGDEAACREAGMDDYLSKPIEPRLLYDKLSKWLP 984

Query: 122 EA 123
           EA
Sbjct: 985 EA 986


>gi|114569317|ref|YP_755997.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339779|gb|ABI65059.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 233

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D++    L +  ++  G+      N  +AL        D++++D+ +  ++G 
Sbjct: 9   AHILVVDDDDRIRNLLKRFLQERGFRVSTAPNAGKALSTLNSLAFDLLVLDVMMPGMNGF 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T+ +++  E    P++ +TA     D  +    G + Y+ KP      +  I   +  
Sbjct: 69  ELTEAVRKRGET---PILLLTARGDAEDRIKGLSLGADDYLPKPFEPEELVLRINAILRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
 gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
          Length = 1406

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            K+V+IV+D+  N+      +E  G   L   NG E +     +   D+++MDI + E+ G
Sbjct: 1275 KRVLIVDDDIRNVFALASALEAHGLEVLYADNGREGIAKLEANEDIDLVLMDIMMPELDG 1334

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T+ I+E  +  ++P+I++TA AM+GD E     G   Y+SKP+ L   +  +++++ 
Sbjct: 1335 DATTRMIREMPQFADLPIISLTAKAMRGDRENSLAAGASDYVSKPVDLDHLLNVMRRWLD 1394

Query: 122  E 122
             
Sbjct: 1395 R 1395


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+ELN      ++    Y      +G+ A EL + +  D+I++D+ L  + G+ 
Sbjct: 2   KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +QI+  S  +++P++ +T      ++      G + Y+ KP      +  ++  +  
Sbjct: 62  LCRQIR--SSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRR 118



 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KV+ V+D+   + + + L+   G   +   +  +  E  R   PD++I+D+++   +G+
Sbjct: 381 AKVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGI 440

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++ D +  E+P++ +T         ++   G + ++SKPI     +  I   +  
Sbjct: 441 ELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 500



 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++ +D+ L     + L+E  GY  +    G EA+  A    PDVI++D+ +  ++G E 
Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440

Query: 65   TKQIKEDSELQEIPVIAV-----TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
               +KE +E + IP++       T       +          +ISKP+  S  + ++++ 
Sbjct: 1441 MAMLKESTETKHIPIVICSVYKPTTNNQPSSD-------FVDWISKPVQESYLLHSLRQA 1493

Query: 120  IGEA 123
            I ++
Sbjct: 1494 IAKS 1497



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++IVED+    +LF  L E         + G EA+ L+++  PD++I+D+ L E  G  
Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYIGE 122
            +   +++   L  IPV+  +A  +   E +  K G   +++K  ++   F + + + +  
Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQR 1621


>gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 270

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    + L R  +   G+  +    G EAL  A   +PD++I+D+ L +  G E
Sbjct: 22  RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D    E+ V+ +TA     D+      G + YI+KP ++   +  ++  +  
Sbjct: 82  VCRRLRADG--AEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRR 138


>gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K+  ++IVED     +     +E +G+       G  A    RQ  PD++++DI L  
Sbjct: 1   MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G+E+ K+++      +IP+I +TA   + D     + G + YI KP S    +  +K 
Sbjct: 61  KDGMEVCKELRS---FSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKA 117

Query: 119 YIGEA 123
            +  +
Sbjct: 118 VLRRS 122


>gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
 gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
          Length = 240

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+   + +    +E  GY      +G  AL +    +PD +++D  L  +SGL++
Sbjct: 13  VLLVEDDPALLLMTCYNLEQRGYRVETAEDGEAALLVLETARPDAVVLDWMLPGLSGLDV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +  L+++PV+ +TA + + D  R    G + Y+ KP S+      ++  +  
Sbjct: 73  CRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADDYLMKPCSIDTLDARLRALLRR 130


>gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565]
 gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565]
          Length = 226

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           V+D+    +L  +++   G+      +G E L+   +   D++++D+ + +++G  +  +
Sbjct: 2   VDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQRLAEQSFDLVLLDVMMPKLNGFAMLTK 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +++     + PV+ +TA     D     + G + Y++KP      +  ++  +  
Sbjct: 62  LRK---THDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRR 113


>gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
 gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
          Length = 228

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D     ++ +  +  +GY      +G EALEL +++  D+II DI +  + 
Sbjct: 1   MTKRILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQKYSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++       + P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLIGEV--QYLAPDQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076450|gb|ADJ65849.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 240

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+     L  D +E + Y       G E   +    + D+II+D+ +    GLE
Sbjct: 6   HVLIVDDDPDIRHLLADYLEAASYRPFTAAGGQEMWRILGSERIDIIILDLMMPGEDGLE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++++    +  P++ +TA     D     + G + Y+ KP      +  IK  +  A
Sbjct: 66  LCRELRKK---RNTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRA 122


>gi|291518725|emb|CBK73946.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 236

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++ V+DNE    + + L+E+ GY  L+  +G  AL +      D+II+DI +   
Sbjct: 1   MSKQKILTVDDNEEIRNIIKILLESEGYEVLEACDGEAALSMVDD-SIDLIILDIMMPGK 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGL++ K I+E  +   +P++ +TA     D+      G + Y+SKP S +     +K  
Sbjct: 60  SGLDVCKIIREKYQ---MPILFLTAKGTDSDKSLGLLIGGDDYLSKPFSHAELTARVKSL 116

Query: 120 IGE 122
           +  
Sbjct: 117 LRR 119


>gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 222

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  D ++ +GY+ +   +G  AL   ++ +PD+I++D  +  + G E 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQRRRPDLILLDAMMPGMDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +QIK+  +   IPV+ +TA           + G   Y+ KPI  +  +  +  ++  A
Sbjct: 73  CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131


>gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 902

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 68/120 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDNELN ++  +L+  +        NG EAL LA     D+ +MD+Q+  + GLE
Sbjct: 559 RVLLAEDNELNQQVATELLSAADIEVTVASNGEEALSLAEAQPFDLALMDMQMPVMDGLE 618

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            T++++  +   + P++A+TA AM GD ER  + G   +++KPI        +K++   A
Sbjct: 619 ATRRLRRLASWGKRPILAMTANAMSGDRERCLEAGMNDHVTKPIDPDKLFAALKRWDPRA 678



 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           ++ ++V+D+    ++  + +    +   +  +G +ALE   Q      + +V+ +D ++ 
Sbjct: 411 RRALVVDDSRAAREILAEQLRGMTFRVDEAEDGEQALERVEQAERDGDRYEVVFLDWRMP 470

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            + G+E  +++           + VT +  +         G E  + KP+S S+  +
Sbjct: 471 RMDGIEAARRLMRHDAALRPHRVMVTGYGREEVFRLAEDAGIEMTLIKPVSASVLFD 527


>gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL    + K D++I+DI +  + G +
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 67  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|255654526|ref|ZP_05399935.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296449294|ref|ZP_06891079.1| response regulator [Clostridium difficile NAP08]
 gi|296880773|ref|ZP_06904722.1| response regulator [Clostridium difficile NAP07]
 gi|296261893|gb|EFH08703.1| response regulator [Clostridium difficile NAP08]
 gi|296428220|gb|EFH14118.1| response regulator [Clostridium difficile NAP07]
          Length = 224

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D E  + L +D  E + Y     ++G +AL+   ++ PD+I++DI + EI 
Sbjct: 1   MNNKILVVDDEEGIITLLKDYFEMNSYEVYTAQSGKDALKKISKN-PDIILLDINIPEID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+   +    P++ +TA     D+    + G + YI KP  L      +  ++
Sbjct: 60  GIEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002]
 gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002]
          Length = 232

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K+  +++V+D     +  +  +E           N  +A ++ +   PD++I DI + 
Sbjct: 1   MDKRYNILLVDDEPGVREAVQAYLEDDEALTVTTAENATKAWDVLQTFTPDLVISDIMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ G +   Q++ED   + +PVI +TA  M GD  +  + GC+AY+ KP         +K
Sbjct: 61  QVDGYQFLGQLREDPRFKTLPVIFLTARGMTGDRIQGYQAGCDAYLPKPFEPEELEAIVK 120

Query: 118 KYI-GEA 123
             +  EA
Sbjct: 121 NLLTREA 127


>gi|160899265|ref|YP_001564847.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160364849|gb|ABX36462.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1177

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 5/125 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
            + V++VED+  N+     ++E +G      RNG EALE        Q   D+++MDI + 
Sbjct: 1053 RTVLVVEDDVRNVFALSSILEPTGIRVEIARNGREALETLEARGTAQAGIDLVLMDIMMP 1112

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E+ G    ++I+   + + +P+IA+TA AMK D+E+    G   YI+KP+ +   +  ++
Sbjct: 1113 EMDGYTAMREIRNRPQWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLVR 1172

Query: 118  KYIGE 122
             ++ +
Sbjct: 1173 VWMPK 1177



 Score =  104 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++++ED+     +  +L     +         + L +A  ++P+ I++DI L + SGL
Sbjct: 785 RRILVIEDDRRFADILSELAREMDFECDVASTASDGLAMAASNQPNAIVLDINLPDFSGL 844

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--- 119
            +  Q+K +   + IPV  V+   +    +     G   Y  KP+     +  +K+    
Sbjct: 845 GVLDQLKRNPVTRHIPVHVVS---VADYSQEAMGRGAVGYALKPVKREELVHALKRLEAK 901

Query: 120 ----IGE 122
               +  
Sbjct: 902 FTQDLRR 908



 Score = 88.3 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 50/94 (53%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++VED+E   +  R L+  S    +       ALE  R    D ++MD+ L +ISG 
Sbjct: 907  RRVLVVEDDERQRESVRHLLSRSDVDIVCAGTAAAALEHLRGATFDCMVMDLNLPDISGY 966

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            E+ +++ +  ++   PVI  T  A+  DEE+  +
Sbjct: 967  ELLQRMTDQDDVSFPPVIVYTGRALSRDEEQQLR 1000


>gi|91782444|ref|YP_557650.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|296159047|ref|ZP_06841874.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|91686398|gb|ABE29598.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|295890608|gb|EFG70399.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 241

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     L RD +   G       +         + +PD+I++D+ +  + 
Sbjct: 1   MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   ++++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|27366393|ref|NP_761921.1| Two component response regulator [Vibrio vulnificus CMCP6]
 gi|27362594|gb|AAO11448.1| Two component response regulator [Vibrio vulnificus CMCP6]
          Length = 304

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 67/117 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+KL   L++  GY+     +   AL + ++ KPD+I++DI + E+ G E+
Sbjct: 10  ILVVDDTVDNVKLLSQLLQNEGYLVKGALSAKSALRMCQKKKPDLILLDIMMPEVDGYEL 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +Q+K+D   Q+IPVI ++A     D+ R  + G   YI KP  +   +  ++ + G
Sbjct: 70  CRQLKKDPSTQDIPVIFLSALDHVQDKVRAFQIGGVDYIQKPFEVMEVLARVRTHAG 126


>gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 231

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED+    +L +D +E S +      +G+  L   +++K D+II+D+ L ++ G
Sbjct: 1   MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +I + I    + +++PV+ V+A   + D+ +    G + YI+KP S    +  +K +I
Sbjct: 61  FDILRII---HDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHI 116


>gi|148255684|ref|YP_001240269.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407857|gb|ABQ36363.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains [Bradyrhizobium
            sp. BTAi1]
          Length = 1695

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K V++V+D+  N+     ++E  G   L    G EA++L +      +++MDI + ++ G
Sbjct: 1575 KTVLLVDDDARNIFALSSVLERRGMKVLTATTGAEAIDLVQSTPAISIVLMDIMMPQMDG 1634

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +    I+++     +P+IA+TA AMKGD E+  + G   Y++KP++    +  I+ ++ 
Sbjct: 1635 YQTIGVIRQNPAFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIRMWLH 1694

Query: 122  E 122
             
Sbjct: 1695 R 1695



 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 3/116 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVED+    ++  DL    G+  L    G EAL+LA+Q++P  I +D+ L ++ G  
Sbjct: 1308 TLLIVEDDPHYARVLIDLARDKGFKILVATRGAEALDLAKQYQPAAISLDVFLPDMLGWT 1367

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +  Q+K +   + IPV  +T   +  D +     G  ++++KP +       + + 
Sbjct: 1368 VLSQLKHNPLTRHIPVQIIT---LDEDRQHALARGAFSFVNKPTTTEGVSAALSQI 1420



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++IVEDN       R L++      L    G  ALE  R    D +++D++L ++SG 
Sbjct: 1429 KRLLIVEDNAAEQLSIRQLLDHDDIEILAADTGAGALEALRGTPCDCVVLDLRLPDMSGF 1488

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            ++  Q++ D  L  IPV+  T   +  +E+        + + K + S    ++
Sbjct: 1489 DVLDQLRSDETLSGIPVVVFTGRELSAEEDAELHTMARSIVVKGVESPERLLD 1541


>gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G++     NG +A  L  +    ++++D+ L    GL 
Sbjct: 7   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++E     +IPV+ +TA   + D     + G + Y+ KP +    +  I+  +  
Sbjct: 67  ICRRLREAGN--QIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRR 123


>gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira
            interrogans serovar Lai str. 56601]
 gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira
            interrogans serovar Lai str. 56601]
          Length = 1205

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
            KK+++V+D+  N+     ++   G   L+  +G  ALEL  +    D+++MDI + E+ G
Sbjct: 1085 KKILLVDDDMRNVFALSKILSEKGMNVLKAEDGNSALELLSKNEDVDLVLMDIMMPEMDG 1144

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E  K+I+E S+ + + +IA+TA AM+ D ++  + G   YI KP+ +      ++ ++ 
Sbjct: 1145 YETMKKIREISKYKNLTIIALTAKAMQNDRQKCIEAGANDYIPKPVDVERLFSLMRVWLS 1204

Query: 122  E 122
            +
Sbjct: 1205 K 1205



 Score = 90.6 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 4   KVMIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KV++V ED+     +        G+  +    G + L L R++KP  II+D+ L  I G 
Sbjct: 817 KVLLVIEDDLKFASVLIKQANEKGFKCISAATGEDGLILTRKYKPHAIILDLDLPGIKGQ 876

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
            +  ++K D  ++ IPV  V+A         + +GG   +I KPI           I+ +
Sbjct: 877 TVLNELKADQSIRHIPVHIVSAN---EYSLELIRGGAVEHIRKPIHKKELDEAFNRIENF 933

Query: 120 IGE 122
           I  
Sbjct: 934 INR 936



 Score = 82.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K ++I+ED+  + K+   LI        +  +G EAL +  ++  D I++DI L ++SG
Sbjct: 938  MKNLLIIEDDFNSRKMMLKLIGNGDVKCFEADSGKEALRVYAENHFDCIVLDIGLPDMSG 997

Query: 62   LEITKQIKEDSELQEIPVIAVTAF--AMKGDEE 92
             E+ +++++    +  P++  T      + D+E
Sbjct: 998  FELIQEMEKIKNGRIPPIVIYTGKELTKEEDKE 1030


>gi|262409757|ref|ZP_06086294.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262352374|gb|EEZ01477.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1321

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+        L++   Y+     NG +AL +AR++ PD+I+ D+ + E+ G 
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI------ 116
            E+   +K D E   IPV+ +TA   + D     + G +AYI+KP S+++    I      
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187

Query: 117  KKYIGEA 123
            +  +  A
Sbjct: 1188 RALLRRA 1194


>gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 228

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL      K D++I+DI +  + G +
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 67  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 252

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D ++   L    +   G+       G++A++ A++ +PDV+++DI L +  GLE
Sbjct: 22  RVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGLE 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+       +PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 82  VMRRIR--GRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRS 139


>gi|223938484|ref|ZP_03630377.1| response regulator receiver protein [bacterium Ellin514]
 gi|223892903|gb|EEF59371.1| response regulator receiver protein [bacterium Ellin514]
          Length = 134

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M++ +++IV+D    ++L    +   GY  +   NG++A+  A    PD+I++D+ L E+
Sbjct: 1   MMRPRILIVDDEPDIVELVSFNLRAEGYEVVTASNGLDAVTQANSLIPDLIVLDLMLPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + + +        IP+I +TA+  +         G E Y++KP S    +  +KK 
Sbjct: 61  DGLSVCELLHRFPTTARIPIIMLTAWTSELSRLIGLDYGAEDYMTKPFSPRELVLRVKKT 120

Query: 120 I 120
           +
Sbjct: 121 L 121


>gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 232

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
              +++V+D     +  +  +E SG        N  +A ++  +  PDVII DI + E+ 
Sbjct: 4   SATILLVDDEPSIRESVQAYLEYSGDLTVKVASNATDAWQVLEKTIPDVIISDIMMPEVD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++++ DS  + IPVI +TA  M  D  +    GC+AY+ KP         +K  +
Sbjct: 64  GYEFLEKLRNDSRFEGIPVIFLTARGMTSDRIKGYHSGCDAYLPKPFDPEELEAIVKNLL 123

Query: 121 GE 122
             
Sbjct: 124 ER 125


>gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 232

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D+   +K+    +E  GY  +  ++G EA+ +A   KPD++I+DI + ++ 
Sbjct: 1   MNGTILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE  ++IK      ++P++ ++A     D+    K G + Y +KP S +     +K  +
Sbjct: 61  GLEACQKIK---GAADVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|265751907|ref|ZP_06087700.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263236699|gb|EEZ22169.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 379

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N+ L + L+    +  +   NG EAL  A   +PD+I++D+ + E++G E
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K D E Q IP+I +TA     D  +  K G   +ISKP +    +  +
Sbjct: 75  VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127


>gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 226

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRSRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
 gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
          Length = 230

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++ +  +   G+      +G E +    Q   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
 gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED    ++L    ++ +G+     +N  +A +  +Q  P +I++D  L + SGL 
Sbjct: 7   TILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLR 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +I+ D +  E+P+I +TA +M+ D+      G + Y++KP S       I   +  
Sbjct: 67  LLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR 125


>gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555]
 gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555]
          Length = 232

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    L    ++  G+   ++ NG +A       + ++ I+D+ L +I 
Sbjct: 1   MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+E+      PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GFTLCQRIRENHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|294777012|ref|ZP_06742470.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|294449070|gb|EFG17612.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
          Length = 379

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N+ L + L+    +  +   NG EAL  A   +PD+I++D+ + E++G E
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K D E Q IP+I +TA     D  +  K G   +ISKP +    +  +
Sbjct: 75  VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127


>gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24]
 gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1829

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G
Sbjct: 1708 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1767

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++ 
Sbjct: 1768 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1827

Query: 122  E 122
            E
Sbjct: 1828 E 1828


>gi|254881616|ref|ZP_05254326.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319643000|ref|ZP_07997634.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254834409|gb|EET14718.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385365|gb|EFV66310.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 379

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N+ L + L+    +  +   NG EAL  A   +PD+I++D+ + E++G E
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K D E Q IP+I +TA     D  +  K G   +ISKP +    +  +
Sbjct: 75  VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127


>gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 242

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED               G+      +G+  +E A+++ PDVI++D+ L  I GLE
Sbjct: 11  RVLVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVMLPGIDGLE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ +   + +P++ +TA   + D       G + Y++KP S+   +  +K  +  
Sbjct: 71  VCRRIQAEDP-RAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRR 128


>gi|91777087|ref|YP_546843.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91711074|gb|ABE51002.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 241

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L  D +  +G+   +  NG E   +  +   ++I++D+ L    GL 
Sbjct: 6   HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      ++P+I +TA     D     + G + Y+ KP      +  IK  +  
Sbjct: 66  LCREVRAQG---DLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRR 121


>gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 236

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+       G +A+  A++ +PD +++DI L +  GLE
Sbjct: 12  RVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDFDGLE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+       +PV+ +TA     D       G + Y++KP SL   +  ++  +  A
Sbjct: 72  VLRRIRSTD--PSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRA 129


>gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59
           ++ V+IV+D++    L    +E  GY  +Q  +G EAL+    +    D++I+D+ + ++
Sbjct: 1   MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G++  ++I+E      IP++ ++A +   D+      G + Y+ KP +       +K  
Sbjct: 61  NGIDTCRRIRE---TSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
 gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
          Length = 221

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     ++    ++ + Y      +G EAL+     + D+II DI +  + G E
Sbjct: 2   KILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEYDLIITDIMMPNVDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +++E       PVI +TA     D+      G + YI KP      +  I+  +  
Sbjct: 62  FIARLRESKN--NTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118


>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
 gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
          Length = 1325

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 72/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K+++VEDNE+N ++   L+E +G       NG EALE       D+++MD+Q+  + G+
Sbjct: 992  QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              TK I+ +   + +P++A+TA AM  D ER  + G   ++SKPI +  F + +K+++
Sbjct: 1052 TATKHIRTNGRWKNLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFL 1109



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 52/114 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +    D++  D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E+  ++K            VTA+    + +       +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAI 965


>gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1027

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 73/120 (60%), Gaps = 3/120 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED+ +++   + ++E SGY     +NG EAL+   +   D+I+MD+Q+  + G+E
Sbjct: 901  RILVAEDDTISLITAKRMLEKSGYSVSAAKNGQEALQRLTEESFDLILMDVQMPIMDGVE 960

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             TK I+  S L     +P++A+TA+AM GD+E     G + YISKP+  +   E I++ +
Sbjct: 961  ATKAIRGASNLGAKSSVPIVAMTAYAMTGDKETFLAAGMDDYISKPVDKAALAEVIERVL 1020


>gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
 gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
          Length = 239

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 10  MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 69

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 70  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 126

Query: 121 GEA 123
             +
Sbjct: 127 RRS 129


>gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 224

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED           +   G+      +G    EL +    D++I+DI +  ++G
Sbjct: 1   MAKIILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNESFDLLILDIIMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +  ++       PV+ +TA     D  +    G + Y+ KP S       IK  + 
Sbjct: 61  LELCRMYRQRFGYHS-PVVMLTALGTTDDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|171323011|ref|ZP_02911673.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171091604|gb|EDT37194.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 241

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 230

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++ +  +   G+      +G E +    Q   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|87310339|ref|ZP_01092469.1| phosphate regulon response regulator PhoB [Blastopirellula marina
           DSM 3645]
 gi|87286838|gb|EAQ78742.1| phosphate regulon response regulator PhoB [Blastopirellula marina
           DSM 3645]
          Length = 247

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + KV+IVED+     +    +  +GY  +   +G + L  A+   PD++I+D+ L  +
Sbjct: 1   MARLKVLIVEDDRSLADVLAYNVRQAGYEVISAYDGQDGLTQAQIKTPDLVILDLMLPVV 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ ++++ D+  ++I ++ +TA + + D+      G + Y++KP S+ + +E IK  
Sbjct: 61  DGHEVCRRLRADASTKDIMILMLTAKSEESDQLIGFSLGADDYVTKPFSVKVLLERIKAL 120

Query: 120 IGE 122
           +  
Sbjct: 121 VRR 123


>gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
 gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
          Length = 230

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 232

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV+D +   +  +  ++  GY  ++  +G EA+++  + KP + I+DI L  +SG 
Sbjct: 4   KKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEKPALAILDIMLPGMSGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+++S +    +I V+A +   D+    + G + YI KP +    +  ++  +  
Sbjct: 64  EVCEKIRDESPMTG--IIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRR 121


>gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 226

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED++   K    L++   Y  +Q  +G  A+E   +   D++I+D+ L +  G
Sbjct: 1   MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K+IK      ++PVI +TA   + D+      G + Y++KP S +  M  IK  + 
Sbjct: 61  FSVLKEIKNRE---DVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1609

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             ++IV+D  +N ++ ++ +  + Y   Q  +G EAL++       D++++D+ +  +SG 
Sbjct: 1199 HILIVDDEVVNQQVLKNFLNKAIYRITQVLSGEEALQVLDDDDTIDLVLLDVMMPRMSGY 1258

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ ++I+E     E+PV+ +TA     D       G   YI+KP S   F+  +  ++
Sbjct: 1259 EVCQKIREKHLPSELPVLMITAKNQVSDLVTGLNTGANDYIAKPFSKDEFLARLNMHL 1316


>gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 223

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED +   ++ +  +E  GY       G   LE  +++  D++++D+ L E+SG
Sbjct: 1   MANILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVMLPELSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+        PVI +TA     D+      G   Y++KP  +   +  ++  + 
Sbjct: 61  LEVLRRIRATDT--STPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLR 118


>gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED E    L +D +E SG+       G   LE A + + D+II+D+ L E+ G
Sbjct: 1   MSKILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I +Q++++   + IP+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FDICRQVRQE---KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHME 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 226

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  K++IV+++     + + L+   G+   ++ +G EAL++   H   +I +D+ L  +
Sbjct: 1   MKNIKILIVDNDRNVRDVIKLLLVNEGFTVDESGDGNEALDIFSIHNYSLISLDVMLPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+I+E S    IP+I +TA   +  +    + G + YI+KP S    +  IK  
Sbjct: 61  DGWTVCKKIRERS---NIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAV 117

Query: 120 IGEA 123
           +  A
Sbjct: 118 LKRA 121


>gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
 gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
          Length = 253

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+    ++    +E  GY     + G  A+ LAR  +PD+II+D+ L  I G 
Sbjct: 19  QRILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLMLPGIDGR 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + I++       P++ +TA   + D   + + G + Y+ KP         I   +  
Sbjct: 79  DVCRLIRK---WSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRR 135

Query: 123 A 123
           +
Sbjct: 136 S 136


>gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED        +  ++ + +  ++   G E +E AR+HKP+V+++DI L  + G
Sbjct: 1   MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K +++  E   + +I +TA +   D+    + G + YI KP +       IK  + 
Sbjct: 61  LEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
 gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
          Length = 244

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+ L  ++    +  +G+   +  +G  AL  A    PD++++D+ L  + G
Sbjct: 1   MARVLVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARPPDLVVLDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ +++   +  + +PVI +TA A + D     + G + Y++KP S       ++  +
Sbjct: 61  LEVFRRL---TARRPVPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVL 116


>gi|16126702|ref|NP_421266.1| polar differentiation response regulator [Caulobacter crescentus
           CB15]
 gi|13424012|gb|AAK24434.1| polar differentiation response regulator [Caulobacter crescentus
           CB15]
          Length = 130

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 86/122 (70%), Positives = 103/122 (84%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL+E  GY  LQTR G+ AL +AR++KPD+I+MDIQL EIS
Sbjct: 6   MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEIS 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED +L  IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK+ +
Sbjct: 66  GLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 125

Query: 121 GE 122
             
Sbjct: 126 ER 127


>gi|283852522|ref|ZP_06369790.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572130|gb|EFC20122.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 671

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED  +N       ++  G+      +G EAL L  Q   D+++MDIQ+  ++GLE
Sbjct: 550 RILLAEDEPVNRIFTVRALQKLGHSVETAADGREALLLLGQSPFDLVLMDIQMPRLNGLE 609

Query: 64  ITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+          IPV+A+TA+AM  D ER    G + Y++KP      +E +++ +
Sbjct: 610 ATRMIRSGQVPGIATTIPVVALTAYAMDSDRERGLDAGMDEYVTKPFEPWELVEAMERAL 669

Query: 121 GE 122
            +
Sbjct: 670 AK 671


>gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 227

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E        L+   G+  +   NG++AL +  +   D++++D+ L  +SG
Sbjct: 1   MSKILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E   +  +P+I +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  MEVCRKLRE---VSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|92117964|ref|YP_577693.1| response regulator receiver domain-containing protein [Nitrobacter
           hamburgensis X14]
 gi|91800858|gb|ABE63233.1| response regulator receiver domain protein (CheY-like) [Nitrobacter
           hamburgensis X14]
          Length = 121

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/121 (64%), Positives = 103/121 (85%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T NG EAL+L R+ +PD+++MDIQL ++S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSNGFEALDLVRKLRPDLVLMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET+++++
Sbjct: 61  GLDVTRWIKDDPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|50086362|ref|YP_047872.1| osmolarity response regulator [Acinetobacter sp. ADP1]
 gi|49532338|emb|CAG70050.1| two-component response regulator [Acinetobacter sp. ADP1]
          Length = 254

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +  +   L ++    +I++D  L    GL 
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +   + P+I +TA     D     + G + Y+ KP + +  +  I+  +  
Sbjct: 82  ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138


>gi|85716224|ref|ZP_01047198.1| response regulator receiver [Nitrobacter sp. Nb-311A]
 gi|85696896|gb|EAQ34780.1| response regulator receiver [Nitrobacter sp. Nb-311A]
          Length = 121

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/121 (64%), Positives = 103/121 (85%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T NG EAL+L R+ +PD+++MDIQL ++S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYHTSGTSNGFEALDLVRKLRPDLVLMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET+++++
Sbjct: 61  GLDVTRWIKDDPELRGIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola str.
            ES4326]
          Length = 1167

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG EA+    +    D+++MD+ + E+ G
Sbjct: 1043 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGFEAIARLNEVEDIDLVLMDVMMPEMDG 1102

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1103 YEATVEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1162

Query: 122  E 122
            +
Sbjct: 1163 K 1163



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 777 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADDGFNLAARYTPDAILLDMRLPDHSGLTV 836

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D +      G   Y  KP +     +   K 
Sbjct: 837 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 888



 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R H  D +I+D++L ++ G 
Sbjct: 897 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 956

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92
           E+ K++  +      PVI  T   M  DEE
Sbjct: 957 ELLKRMSTEDICSFPPVIVYTGRNMTRDEE 986


>gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 247

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +E+ G+       G EA     +  PD++I+D  L  +SGLE
Sbjct: 19  RILVVEDEAALALLLAYNLESEGFQVEHVERGDEAEIRLSESLPDLVILDWMLPGVSGLE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++   + + +PVI +TA   + +  R    G + Y+ KP S    M  +   +  A
Sbjct: 79  ICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLRRA 138


>gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T]
 gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T]
          Length = 228

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     +  R  +  + Y+     +G E   LA +   D++++D+ L  + G  
Sbjct: 2   KILVVEDELKLAEYLRKALTENSYVVDVAHSGTEGRYLAIEGHYDLVLLDVMLPGLDGFA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D   + +PV+ +TA     D  +  + G + Y+ KP +LS  +  ++  +  
Sbjct: 62  VLRELRRD---KHVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLRR 117


>gi|163792857|ref|ZP_02186833.1| response regulator receiver protein [alpha proteobacterium BAL199]
 gi|159181503|gb|EDP66015.1| response regulator receiver protein [alpha proteobacterium BAL199]
          Length = 136

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/119 (69%), Positives = 103/119 (86%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IVEDNELNMKLF DL+E  GY  + TR+GMEAL +AR  +PD+I+MDIQL ++SGL
Sbjct: 18  KTVLIVEDNELNMKLFHDLLEAHGYNIIGTRDGMEALRIARDSRPDLILMDIQLPKVSGL 77

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+TK IKED  L+ IPVIAVTAFAMKGDEE+IR+GGCEAYI+KPIS++ F+ET+KKY+G
Sbjct: 78  EVTKWIKEDDRLKSIPVIAVTAFAMKGDEEKIREGGCEAYIAKPISVTNFLETVKKYLG 136


>gi|160885098|ref|ZP_02066101.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483]
 gi|156109448|gb|EDO11193.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483]
          Length = 1325

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1132

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1133 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1189


>gi|119469501|ref|ZP_01612405.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Alteromonadales
           bacterium TW-7]
 gi|119447036|gb|EAW28306.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Alteromonadales
           bacterium TW-7]
          Length = 330

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+D   N+K+ R+++    Y     ++G  AL L  +  P +I++DI + +++G E
Sbjct: 9   RVLIVDDEPANLKVMREILGNQ-YRLSFAKSGEAALTLLEKELPKLILLDIMMPDMNGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K + +   IP+I VTA   + DE +  + G   YI+KPIS +I    +K ++
Sbjct: 68  VCEHVKRNPKTAHIPIIFVTALGDESDEYKGFELGAVDYITKPISPAIVRARVKTHL 124


>gi|68565392|sp|Q44929|GTCR_ANEMI RecName: Full=Response regulator gtcR
 gi|468745|emb|CAA55264.1| gtcR [Brevibacillus brevis]
          Length = 242

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I +D    ++L +  +E   Y  ++  +G +A    RQH  D+ I+DI +  + 
Sbjct: 1   MSKTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K++  + +L   PVI ++A     D+      G + +ISKP +    +  I+  +
Sbjct: 61  GFQLIKRLTNEYKL---PVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|68171699|ref|ZP_00545057.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657972|ref|YP_507571.1| response regulator PleD [Ehrlichia chaffeensis str. Arkansas]
 gi|67998880|gb|EAM85574.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599429|gb|ABD44898.1| putative response regulator/diguanylate cyclase [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 458

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IV+D   N+KL +  + +  Y  L   NGM+A+++A +  PD+I++D+ + E+ 
Sbjct: 1   MTAKVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEEKHPDIILLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  K++K + E   IP++ VTA     D        G + +++KPI+ +     I+  
Sbjct: 61  GYETCKRLKSNPETTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPINDTALFARIRSL 120

Query: 120 IG 121
             
Sbjct: 121 TR 122



 Score = 75.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 5   VMIVEDNELNM-KLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++IV D ++   +   ++++ S    + + N  +AL L+     D+II+D++     GL 
Sbjct: 159 ILIV-DEDMIRSEHINNVLQKSFQQTVVSHNIDQALTLSNTQNYDLIIIDLEFSG-DGLR 216

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGD---EERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  Q++   E +  P++ +       D     +    G   YI+ PI  +  +  +   +
Sbjct: 217 LCSQLRNKIETRYTPILVL--LDENEDPKLLSKAFDIGIHDYITNPIDSNELIARVNVQV 274

Query: 121 GE 122
             
Sbjct: 275 KR 276


>gi|186682101|ref|YP_001865297.1| response regulator receiver modulated serine phosphatase [Nostoc
           punctiforme PCC 73102]
 gi|186464553|gb|ACC80354.1| response regulator receiver modulated serine phosphatase [Nostoc
           punctiforme PCC 73102]
          Length = 396

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D+ +   + +  ++  GY     +NG E +  A+  +P +II D  + ++ G
Sbjct: 1   MFKILVIDDDPIVRTVLKKTLQNQGYDTSVAKNGEEGIRQAQLLRPALIICDWMMSQLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVT----AFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           LE+ ++I+ D EL     I +T    A   + D  R    G + +ISKPI ++     ++
Sbjct: 61  LEVCRRIRTDPELATTFFILLTAKGAARGEEEDRVRGLDAGADEFISKPIEMNELKARVR 120

Query: 118 KYIG 121
             + 
Sbjct: 121 AGLR 124


>gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 200

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED      +    ++ +GY      +G EAL+     + D++I+DI + ++ G E
Sbjct: 2   KILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEYDLVILDIMMPKVDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++   +     V+ +TA     D+ +    G + YI KP   +  +  I+  +  
Sbjct: 62  VIKKLR--DKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRR 118


>gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 229

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++ + G++     +G  AL   R+++PD++++D+ L  +S
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + I+ +S    +P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GIDVARAIRGESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|253578578|ref|ZP_04855850.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|257413775|ref|ZP_04744208.2| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|251850896|gb|EES78854.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|257202423|gb|EEV00708.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
          Length = 235

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D    + +        GY+     NG EAL    +H PD+I++DI + +++
Sbjct: 12  MAQSILIVDDERDIVSMLNQYFCKIGYVVYTAINGKEALNAITKH-PDIILLDINMPDMN 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+        P+I +TA     D+ +    G + Y+ KP S+      +  ++
Sbjct: 71  GFTICEKIR---NFVSCPIIFLTARIEDCDKIKGFAVGGDDYVVKPFSVDELEARVAAHL 127

Query: 121 GE 122
             
Sbjct: 128 RR 129


>gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 226

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E        ++E  G+      +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTRLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + ++  S    +P+I +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRTLRTRS---TVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)]
 gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)]
          Length = 1829

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G
Sbjct: 1708 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1767

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++ 
Sbjct: 1768 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1827

Query: 122  E 122
            E
Sbjct: 1828 E 1828


>gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 234

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+ +  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300725849|ref|ZP_07059315.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid [Prevotella bryantii B14]
 gi|299776896|gb|EFI73440.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid [Prevotella bryantii B14]
          Length = 1355

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN   ++L + ++    Y  +  +NG +A  + ++   D++I DI +  + GLE
Sbjct: 1104 TILIVEDNLELLQLMQKILGNL-YHIITAKNGSQAWNIIQKESLDLVISDIMMPIMDGLE 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +T+ IK + + Q IPV+ +TA     D+ +  + G + +++KP S+      I   +
Sbjct: 1163 LTRLIKTNHDYQLIPVVLLTAKTTTEDKNKGLEAGADDFMNKPFSMEELKMRIANLL 1219


>gi|298483673|ref|ZP_07001848.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298270243|gb|EFI11829.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1344

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208


>gi|294647220|ref|ZP_06724819.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|292637507|gb|EFF55926.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
          Length = 1344

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208


>gi|229142249|ref|ZP_04270771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228641187|gb|EEK97496.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 230

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59
           +KKV+IVED ++  +         GY  +   +G   L+L   ++H   ++I+DI L  +
Sbjct: 5   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 64

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + ++I+++S    +P+I +TA + + D     + G + Y++KP   SI +   K+ 
Sbjct: 65  DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121


>gi|189426613|ref|YP_001953790.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189422872|gb|ACD97270.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++M+VED     +     +E  GY       G  ALE  R  + D+II+D+ L  + G +
Sbjct: 7   RIMLVEDELHLARGICFNLEQDGYAVSHFDRGETALEALRVERCDLIILDVMLPGMDGFQ 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++E      +P++ +TA +   D     + G + Y++KP +L+ F+  +K  +  +
Sbjct: 67  VCKAMRELD--SRVPILMLTARSEDVDRVSGLESGADDYLTKPFNLAEFLLRVKGMLRRS 124


>gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1424

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G+  L   NG + ++    H    +++MD+ + E+ G
Sbjct: 1304 RTVLVVDDDARNLFALSGILELHGFKVLHAENGRKGVDTLLAHPEICLVLMDVMMPEMDG 1363

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+  S+  ++PV+AVTA AM GD E+  + G   Y++KP+  +  +  +++++
Sbjct: 1364 YAATTEIRSMSQYTDLPVVAVTAKAMPGDREKALQSGASDYVTKPVDANDLIACVRRWL 1422


>gi|158338166|ref|YP_001519343.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158308407|gb|ABW30024.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 355

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+D   N+ L + ++E++GY      +G  AL   ++ +PD++I+D+ +  +SG E+
Sbjct: 11  ILAVDDLPDNLMLLKMMLESAGYRIELVDSGPAALAQIQKAQPDLVILDVMMPGMSGYEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+ D +L  IP++ ++A   +    +    G + +I KP+ L      ++  + 
Sbjct: 71  TQKIRNDPQLPYIPILLISAH-ERSSVVKGLDAGADDFIRKPVELEELQARVRSLLR 126


>gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 248

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L    +   G+      NGM AL  ARQ +PD +++D+ L ++ G  
Sbjct: 23  RVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVMLPDLDGFA 82

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E +    +PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 83  VLRRLREVAPT--VPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS 140


>gi|167034739|ref|YP_001669970.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida GB-1]
 gi|166861227|gb|ABY99634.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida GB-1]
          Length = 643

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 68/116 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N  +   ++ + G       +G+EA++L  Q +   ++MD +L  + G E 
Sbjct: 517 VLLVEDNPVNQSVIEAMLRSLGLAVCTAEDGLEAVDLVGQQRFAAVLMDCRLPHLDGYEA 576

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++I++      +P+IA+TA A++GD ER    G + Y+SKP+  +     +++++
Sbjct: 577 TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQRVLQRWL 632


>gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 248

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I++D++  ++L    +   GY   +  +G +AL++   ++ D++I+DI + + +
Sbjct: 18  MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDLMILDIMMPKRN 77

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E++    +P++ ++A A   D+      G + Y+ KP +    +  +K  +
Sbjct: 78  GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 134

Query: 121 GEA 123
             +
Sbjct: 135 RRS 137


>gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 239

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D  + ++L    +   G+      +G +AL+ AR  +P  +I+D+ +  I G 
Sbjct: 12  ARVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVMMPGIDGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  +++ D    + PV+ +TA     D+      G + YI+KP SL   +  ++  +  
Sbjct: 72  GLLPRLRADGI--DAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRR 129

Query: 123 A 123
           A
Sbjct: 130 A 130


>gi|330953354|gb|EGH53614.1| response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 1172

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 1107

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1108 FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167

Query: 122  E 122
            +
Sbjct: 1168 K 1168



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 782 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 841

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++   ++  +E     G   Y  KP +     +   K 
Sbjct: 842 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893



 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R H  D +I+D++L ++ G 
Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 961

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 962 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 992


>gi|330900706|gb|EGH32125.1| response regulator receiver [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 934

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
           +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 810 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 869

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 870 FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 929

Query: 122 E 122
           +
Sbjct: 930 K 930



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 544 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 603

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++   ++  +E     G   Y  KP +     +   K 
Sbjct: 604 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 655



 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R H  D +I+D++L ++ G 
Sbjct: 664 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 723

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 724 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 754


>gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 228

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++ +D++         ++  GY  L+  +G+EA+EL  Q++   +I+DI + ++ G+ 
Sbjct: 5   TVLVTDDDQDIRDGIEIYLKNEGYRVLKAADGLEAIELLEQNEVHCMILDIMMPKMDGIT 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+ +   + IP+I ++A A + D+      G + YI+KP      M  +K  +  
Sbjct: 65  ATFKIRAE---RNIPIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLRR 120


>gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 229

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED     +     ++  GY  +   NG E LE+A +   D+I++D+ L E+ 
Sbjct: 1   MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++++   +   ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQQE---KNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 235

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    + + +  +E   Y+  +T +G  AL L    +PD+II+D+ L ++SG +
Sbjct: 5   KILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLMLPDLSGED 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I++ S   +IP++ +TA + + D       G + Y+ KP S    M  +   +  +
Sbjct: 65  VCKTIRKKS---DIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRRS 121


>gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
 gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
          Length = 230

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 233

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    ++L +  +   G+  +    G EAL++A + +PD  I+D+ +  + G E
Sbjct: 7   KVLVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVMMPGMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E     + PV+ +TA     D+      G + Y+ KP SL   +  ++  +  
Sbjct: 67  LLTKLRETGH--DGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRR 123


>gi|209524683|ref|ZP_03273230.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209494827|gb|EDZ95135.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 227

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D           +   GY   +   G++A  LA+ H  D++I+D  L   SGLE
Sbjct: 2   RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I  Q++        P++ +TA     D  +    G + Y+ KP  L   +  ++  +  
Sbjct: 62  ICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|153872459|ref|ZP_02001345.1| histidine kinase [Beggiatoa sp. PS]
 gi|152071075|gb|EDN68655.1| histidine kinase [Beggiatoa sp. PS]
          Length = 823

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           KKV+IV+D+  N      ++E      +   NG EALEL  +H+   +++MDI + E+ G
Sbjct: 703 KKVLIVDDDPRNTFALATVLEDKQMEVIAGNNGNEALELLDEHQNITIVLMDIMMPEMDG 762

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  +QI+     +++P+IA+TA AMKGD+ +  + G   Y+SKP+     +  ++ ++
Sbjct: 763 YEAMRQIRAQDRFRKLPIIALTAKAMKGDKSKCIEAGANDYLSKPVDTDKLISLMRVWL 821



 Score =  106 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED+   + +  +L    G+  L   NG   L+L  +++P+ II+D+ L ++ G  +
Sbjct: 436 ILIIEDDRKFISILMELAHEKGFKCLVAENGQTGLQLVEEYQPNAIILDVGLPQLDGWTV 495

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKYI 120
              +K+D + + IPV  ++A     +     + G   Y+ KP++L       + I++++
Sbjct: 496 MGILKDDPKTRHIPVHFISA--ADHNILEATRMGAIGYLQKPVNLEQLGETFQKIEQFM 552



 Score = 50.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 9/117 (7%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV DNE + +   DL+               AL+  +Q   D II+D+ +++ SG 
Sbjct: 557 KKLLIVVDNEPHQQQILDLVSAKDIETTLAVTMTTALQNLKQALFDCIILDLDIEQRSGS 616

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK-PI----SLSIFME 114
           ++ KQ++E   L + P+I   A       E      C     K PI    S    ++
Sbjct: 617 QLLKQMQEIDGLCQTPMIVY-ADRELSTAEEALLLQCAD---KLPIKSVHSPERLLD 669


>gi|152985847|ref|YP_001347317.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7]
 gi|150961005|gb|ABR83030.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7]
          Length = 242

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 56/121 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D++   +L    +  +G+       G +  +   + +  + I+D+ L +  G 
Sbjct: 6   RSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEAILAILDVMLPDEDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+    L  +P+I +TA + + D     + G + Y+ KP S    +  IK  +  
Sbjct: 66  SLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|93006920|ref|YP_581357.1| CheA signal transduction histidine kinases [Psychrobacter
            cryohalolentis K5]
 gi|92394598|gb|ABE75873.1| CheA signal transduction histidine kinases [Psychrobacter
            cryohalolentis K5]
          Length = 2301

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 68/119 (57%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+D+    K+    +E  G+  +  ++G++ALE+ ++  PD++++DI++  + G E
Sbjct: 2175 TILVVDDSVTVRKVTSRFLERQGFNVVLAKDGIDALEILQEMTPDLMLLDIEMPRMDGFE 2234

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  Q++ +  LQ +P+I +T+   +   ER  + G   Y+ KP   +  ++ I+  + E
Sbjct: 2235 VATQVRHNGRLQHLPIIMITSRTGEKHRERALEIGVNDYMGKPFQENQLLDKIQSLLDE 2293


>gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 233

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E      +  +   GY  +  ++G EALEL ++  P +I++D  L    G+ 
Sbjct: 7   KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S   ++P+I +TA     D       G + YI+KP  +      I+  +  
Sbjct: 67  VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122


>gi|312889094|ref|ZP_07748653.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
 gi|311298404|gb|EFQ75514.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
          Length = 1401

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN+      +D ++   +  ++  NG E  + A    PD+I+ DI + E++G+E+
Sbjct: 1141 VLLVEDNDDFRFYLKDNLKEVFF-LIEASNGREGWQKALAMHPDIIVSDISMPEMTGIEL 1199

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K++K D     IPV+ +TA   + D+ +  + G   Y++KP +  I +  IK  +
Sbjct: 1200 CKKLKSDKRTSHIPVVLLTALTGEADQIKGLEIGANDYMTKPFNFEILLSKIKNIL 1255


>gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 245

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++I +D+     L +  ++   Y  +   NG+EAL+   +   DV+I+D+ +  + G 
Sbjct: 19  RRILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQPFDVVILDVMMPYVDGF 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++I+  S   ++P++ +T+     D     + G + YI+KP      +  ++  +  
Sbjct: 79  EACERIRAQS---DVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRR 135


>gi|262406809|ref|ZP_06083358.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262355512|gb|EEZ04603.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1325

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1132

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1133 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1189


>gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 226

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 226

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|237714923|ref|ZP_04545404.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229445248|gb|EEO51039.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1344

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208


>gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 224

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K   
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|209518114|ref|ZP_03266943.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501418|gb|EEA01445.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 246

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L    +E +G       NG +         PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRAALENGAPDLIVLDLMLPGEDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   + + +P++ +TA   + D     + G + Y++KP +    +  I+  +  A
Sbjct: 66  LCRELRA-GKFRTVPILMLTARNEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRA 124


>gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E ++   +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|302335808|ref|YP_003801015.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319648|gb|ADK68135.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 231

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++V+D+     L   L+   G  A    +G  ALE   +    ++I+DI +  + 
Sbjct: 1   MSEHVLVVDDSREIADLVTTLLGAEGIHADACHDGESALERFAERGYGLVILDIMMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+       +PV+ ++A + + D  R      + YI+KP      +  +K  +
Sbjct: 61  GWEVCRRIR---RTSAVPVLFLSAKSEEMDVVRGFSLDADDYITKPFKPFELIARVKARL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 239

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    K  +  + +  Y  L   +G EAL+L    K D+I+MDI + + +G++
Sbjct: 5   TILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQKIDLILMDIMMPKKNGID 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T  I+++S    IP++ ++A +   D+      G + YI+KP +    +  +   +  
Sbjct: 65  TTMLIRQESI---IPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLRR 120


>gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 904

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 77/129 (59%), Gaps = 10/129 (7%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP------DVIIMDIQLQE 58
           V++VED+++N    + ++   G+      NG EAL+      P      D+I+MDIQ+  
Sbjct: 769 VLVVEDDDMNRMAAQRMLVKLGFTVHTACNGQEALDFLAGQTPQAQPSVDLILMDIQMPV 828

Query: 59  ISGLEITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           + GLE T++I+E+++ +     P+IA+TA+AM GD ER  + G + +++KP+ ++  ++ 
Sbjct: 829 MDGLEATRRIRENADGRFDPLTPIIALTAYAMAGDRERFLQAGLDDHLAKPVKVAEMLDA 888

Query: 116 IKKYI-GEA 123
           +K+ +   A
Sbjct: 889 MKRALDRRA 897


>gi|225850505|ref|YP_002730739.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
 gi|225645423|gb|ACO03609.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
          Length = 218

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVEDN       ++++E +GY+     +G EAL+     + D+II+DI L +I G +
Sbjct: 2   KILIVEDNVQLNDTLKEVLEINGYLVDTAFDGEEALDYLNATEYDLIILDIMLPKIDGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +  +   +    P++ +TA     D+ +    G + Y+ KP  +   +  ++  I  A
Sbjct: 62  VCQLAR--DKGINTPILMLTAKDRLEDKVKGLDIGADDYLVKPFEIDELIARVRALIRRA 119


>gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
 gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
          Length = 230

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D          +++  GY      +G    E A     D++I+D  L   +GLE
Sbjct: 2   RILLVDDEVELTDPLSRVLKREGYSVDMAYDGATGSEFAAGGTYDLLILDWMLPGKTGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++     +  PV+ +TA     D       G + Y+ KP  L   +  ++  +  A
Sbjct: 62  ICQELRRQG--KATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRA 119


>gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 217

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED E   K+ +  +E  G+   +  +G EA+E  +     V+I+D+ L +  G  
Sbjct: 2   KILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++     + PVI +TA     D+    + G + Y+ KP+S    +  +K  +  
Sbjct: 62  VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117


>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1823

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N K+   L+E  GY A    NG+EALE  R+   DV++MD+Q+ ++ GLE
Sbjct: 1534 RILLAEDNLVNQKVATHLLERIGYRADIAGNGLEALEALRKQFYDVVLMDVQMPQMDGLE 1593

Query: 64   ITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK---Y 119
             T++I +E  E     +IA+TA AM+GD E+    G   YI+KP+        + K    
Sbjct: 1594 ATRRICQEWPEQLRPRIIAMTANAMQGDREKCLAAGMNDYITKPVRREELANALSKCKPI 1653

Query: 120  IGE 122
            + E
Sbjct: 1654 LRE 1656



 Score = 74.0 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 61/139 (43%), Gaps = 19/139 (13%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K+++IVE+++ N ++   L +  G I +    G EA++L + +   D+ I+ + L ++ G
Sbjct: 1333 KRLLIVENHDTNRQVLIKLSQYWGMIPIAAATGAEAMQLLQHNPMVDLAILAMNLADMDG 1392

Query: 62   LEITKQIK----------------EDSELQEIPVIAVT--AFAMKGDEERIRKGGCEAYI 103
            + +  +I+                     + +P++  T    A    +    +     ++
Sbjct: 1393 IALANKIRNFELGYSHLVNGSEPARTEPERRLPMVMFTYLGKAEVWKKLENAEINFAGFL 1452

Query: 104  SKPISLSIFMETIKKYIGE 122
            +KP+  S F   + +  G+
Sbjct: 1453 TKPLKQSQFYNVLLQIFGD 1471


>gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 237

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E    A+Q  PDV+I D+ +  + G  
Sbjct: 12  RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFGKAQQLLPDVVITDVMMPRLDGYG 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +  +++ D  L   PVI +TA  M  D  +    G + YI KP      +  ++  
Sbjct: 72  LLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 127


>gi|163848627|ref|YP_001636671.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526562|ref|YP_002571033.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163669916|gb|ABY36282.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450441|gb|ACM54707.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 437

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ ED      L R+++ + GY      NG   +E A++  PD+I++D+ +  + GL
Sbjct: 5   ARILVAEDEPDVGMLLREILVSEGYEVELVPNGHLLVERAQEQPPDLILVDLLMPLMDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  +Q++ D+    +P++ +TA           + G + YI KP    + +  ++  +  
Sbjct: 65  EAIRQLRNDTRTSHLPMLILTALGESSRIVEGLETGADDYIVKPYEREVLLARVRSQLRR 124

Query: 123 A 123
           A
Sbjct: 125 A 125


>gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 223

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED +   KL RD  +  G+   +  NG+E LE+ + +  +++I+DI +  + G ++
Sbjct: 3   ILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNNINIVILDIMIPYLDGWKV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K I+E   L ++P+I +TA + + D+    + G + Y++KP S  + +  +K  +  +
Sbjct: 63  CKNIRE---LSKVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRS 118


>gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC]
          Length = 233

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E      +  +   GY  +  ++G EALEL ++  P +I++D  L    G+ 
Sbjct: 7   KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S   ++P+I +TA     D       G + YI+KP  +      I+  +  
Sbjct: 67  VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122


>gi|288960530|ref|YP_003450870.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912838|dbj|BAI74326.1| two-component response regulator [Azospirillum sp. B510]
          Length = 249

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+D+     +  D +  SG+      +G E   +  Q   D+II+D+ L    G 
Sbjct: 5   RHLLIVDDDPEIRDMLHDFLVKSGFRVSTAGDGREMARVLAQWPVDLIILDLMLPGEDGT 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++  S     PVI +TA   + D     + G + Y+ KP S    +  I+  +  
Sbjct: 65  SLCRSLRAKSGT---PVIMLTAMGSEVDRIVGLEVGADDYLVKPFSARELLARIRAILRR 121


>gi|158423478|ref|YP_001524770.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158330367|dbj|BAF87852.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 149

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 84/121 (69%), Positives = 107/121 (88%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K VMIVEDNELNMKLF DL+E  GY  ++TRNG+EA++LARQH+PD+I+MDIQL E+S
Sbjct: 28  MAKTVMIVEDNELNMKLFHDLLEAHGYHTVETRNGIEAMDLARQHRPDLILMDIQLPEVS 87

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K D+EL+ IPV+AVTAFAMKGDEERIR GGCEAY+SKPIS++ F+ET++++ 
Sbjct: 88  GLEVTKWLKADAELKAIPVVAVTAFAMKGDEERIRAGGCEAYLSKPISVAKFLETVRRFA 147

Query: 121 G 121
           G
Sbjct: 148 G 148


>gi|158337175|ref|YP_001518350.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307416|gb|ABW29033.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 253

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 65/122 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D+    +L    +E +GY   Q  +G++   LA Q  PD+II+D+ L ++ 
Sbjct: 1   MKTRILVIDDDPAIAELVAINLEMAGYDVAQATDGIKGQALAVQLLPDLIILDLMLPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++++ D    +IP++ +TA +   D+      G + Y++KP  L   +  ++  +
Sbjct: 61  GFTICQRLRRDQRTADIPILMLTALSQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ]
 gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ]
          Length = 735

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 69/118 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDNE+N  + R+ +  +G       +G E +E  +    D ++MD+Q+  + G+
Sbjct: 608 ARILLVEDNEVNQFVAREFLTKAGLKVTCAAHGGEGVEWIKNSVFDAVLMDMQMPVMDGV 667

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + T+ I++    +++P+IA+TA AM+ D +     G + Y+SKPI     +E + K+I
Sbjct: 668 QATQLIRKLPAGRQLPIIAMTAAAMEADRQTCLDAGMDDYLSKPIVPLEILEKLIKWI 725


>gi|115525387|ref|YP_782298.1| response regulator receiver protein [Rhodopseudomonas palustris
           BisA53]
 gi|115519334|gb|ABJ07318.1| response regulator receiver protein [Rhodopseudomonas palustris
           BisA53]
          Length = 121

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 83/121 (68%), Positives = 104/121 (85%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY  + T NG EALEL R+ +PD+I+MDIQL ++S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYQTMGTSNGYEALELTRKLRPDLILMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET++++I
Sbjct: 61  GLEVTKWIKDDPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 229

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + G
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 61  FQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D E  + +   ++E   +      +G+EA++L +    D+ I+DI +  + 
Sbjct: 1   MKPSILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLLQNRVFDLCILDIMMPRLD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+   +  + E   IPVI ++A A   D     +GG + YI+KP   +  +  +K  +
Sbjct: 60  GMEVLHVL--NREQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
 gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
          Length = 1157

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK++IV+D+  N+      ++T         +G E+L    +    D+++MDI + ++ G
Sbjct: 1037 KKILIVDDDMRNIFALSSALQTYDMQVEIANDGEESLTKLEETAGIDMVLMDIMMPKMDG 1096

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  + I++  +  ++P+IA+TA AMK D ++  + G   YI+KP+ +   +  ++ ++ 
Sbjct: 1097 YDAMRHIRKQQKWAKLPIIALTAKAMKEDRDKCIEAGANDYITKPVDVDRLLALMQIWLE 1156

Query: 122  E 122
            +
Sbjct: 1157 Q 1157



 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 2/108 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED++    + +D  +  GY ++   +G +A+E  + + PD +I+DI L    G +I
Sbjct: 765 VVIVEDDKNFAAILQDYAKEHGYQSILVHDGDQAVETVQNNHPDAVILDIMLPGKDGWQI 824

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
            K++K D E   IPV  ++A     +  R  K G  +++ KPI+  + 
Sbjct: 825 LKELKNDPETAGIPVHLMSAGDAAVNRVR--KEGAISFLKKPINTEVL 870



 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 52/103 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++++ED+++     R+L+E  G    Q  +G  A  +  + +   +I+DI L +ISGL
Sbjct: 886 KQILLIEDHKMQSHALRELMEKQGITVDQAFDGESAFRMLTESEYQCVILDINLPDISGL 945

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
           ++  +IKE     E+PVI  TA  +             A + K
Sbjct: 946 DLLDKIKEVERFAELPVIVNTAMELDKTSVSRLMQYANAMVVK 988


>gi|322418727|ref|YP_004197950.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125114|gb|ADW12674.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 258

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED     +     +E  GY+     +G EALE  R  K D+II+D+ L  I G E
Sbjct: 7   HILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVRMEKFDLIILDVMLPGIGGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+       +PV+ +TA + + D       G + Y+ KP +L  F+  +   +  +
Sbjct: 67  VCQKIRALD--SRVPVLMLTARSAESDRISGLAAGADDYLIKPFNLKEFLLRVSGMLRRS 124


>gi|189183991|ref|YP_001937776.1| response regulator PleD [Orientia tsutsugamushi str. Ikeda]
 gi|189180762|dbj|BAG40542.1| putative response regulator protein [Orientia tsutsugamushi str.
           Ikeda]
          Length = 489

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D E N KL    + T  Y      NG EA+++    K DV+++DI +  + 
Sbjct: 1   MTAAILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEAIKIDVVLLDIVMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K IK + +   IPVI +TA +   D+ +  + G + +++KPI        +K  +
Sbjct: 61  GFELCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 40.9 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 40  ELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK----GDE---- 91
           ++A    PD++I++ Q+     L +   ++   EL++   + +T  +++     D     
Sbjct: 214 KIATSLVPDLLIINNQIILEDPLRVYAILRSKDELKQSAFMLLTEDSLENRDYDDISTDK 273

Query: 92  -ERIRKGGCEAYISKPISLS--IFMETIKKYIGE 122
             +  + G   +   P S+     +  IK  +  
Sbjct: 274 LLKGLEMGINDFF--PYSIDNNELLARIKTQLRR 305


>gi|222056633|ref|YP_002538995.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565922|gb|ACM21894.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 225

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++++ED     +L    +E  G+  L+  +G   LE AR   PD+I++D+ L  + G
Sbjct: 1   MKTILVIEDERDLAELIAFNLEKEGFRCLREADGTSGLETARSELPDLILLDLMLPGLMG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            EI K +K++ +   IP++ +TA   + D     + G + YI KP S+   +  I+  +
Sbjct: 61  TEICKILKKNEKTATIPIMMLTARGEEIDRVVGFEVGADDYIVKPFSIRELLLRIRAVL 119


>gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 236

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 60/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+    KL    +E +GY    + NG +A E       ++I++DI L  I G ++
Sbjct: 6   ILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQLSMRSFELILLDIMLPGIDGFDV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++    ++IP+I +TA   + D+    + G + Y+ KP S       I+  +  
Sbjct: 66  CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKR 123


>gi|124265864|ref|YP_001019868.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124258639|gb|ABM93633.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 333

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ SGY  L   +G  ALE A   +PDV+++D  +  + G E+
Sbjct: 30  VLIVDDVPDNVSVLHDALDESGYTVLVATSGEAALERAAHARPDVVLLDALMPGMDGFEV 89

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K D+    IP++ +T  A     E   + G   Y++KPI     +  I  ++  A
Sbjct: 90  ARRLKRDAATAHIPIVFMTGLAETEHVEAAFEAGGVDYVTKPIRPREVIARIAAHVRGA 148


>gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 225

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +     ++  GY      +G+  L  AR+  PD+I++D  L  +SG++I
Sbjct: 6   ILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLPGMSGVDI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K++++      +P+I +TA    GD       G + YI KP +L   +  ++  +  
Sbjct: 66  CKRLRQTGN--NVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121


>gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 225

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++       + +    Y+     +G    EL      D+I++D+ L ++ G+ 
Sbjct: 2   RILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVMLPKMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   +L   P++ +TA     D+      G + Y+ KP  L      I+  +  
Sbjct: 62  LCRKLRSQGDL--TPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRR 118


>gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1240

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 71/117 (60%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+ LN ++ R+ +   G       NG +A+ + +Q   D+++MD+Q+  + GL 
Sbjct: 883 RILVVDDSALNREVAREFLVDVGIKVSTASNGEQAIRMIKQANYDLVLMDVQMPVMDGLT 942

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+ED++ +++P+IA+TA A   D +R    G   +++KPI   +   TI ++I
Sbjct: 943 ATQIIREDNQYKQLPIIAMTAHASPDDYKRSLDSGMNDHLNKPIDHQLLYRTITRWI 999



 Score = 87.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEIS 60
           ++V+DN +  ++  D++ + G       +G  AL+            DV+ +D  +  I+
Sbjct: 733 LVVDDNAMAREVLADILSSLGIEVTTVADGYAALDELESATSSDSPYDVVFLDWNIPAIN 792

Query: 61  GLEITKQIKEDSELQEIPV--IAVTAFAMKGDEERIRKGGCEAYISKPISLS 110
           G+E  K+I E++   + PV  + VTA+ +   E    +   +  ISKP+  S
Sbjct: 793 GVETAKKI-ENNINIKPPVAMLMVTAYDVDRVETDAHQANIKKIISKPVDAS 843


>gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+  + KL   ++E +GY  L+  +    +++  QH PD+I++DI + +I G ++
Sbjct: 3   ILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHNPDLILLDIMMPKIDGFDV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +QI+  SE   +P+I ++A +   D     + G + Y+ KP   S  +  ++  +  
Sbjct: 63  CRQIRRSSE---VPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRR 117


>gi|37679342|ref|NP_933951.1| hypothetical protein VV1158 [Vibrio vulnificus YJ016]
 gi|320156916|ref|YP_004189295.1| two component response regulator [Vibrio vulnificus MO6-24/O]
 gi|37198085|dbj|BAC93922.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319932228|gb|ADV87092.1| two component response regulator [Vibrio vulnificus MO6-24/O]
          Length = 304

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 67/117 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+KL   L++  GY+     +   AL + ++ KPD+I++DI + E+ G E+
Sbjct: 10  ILVVDDTVDNVKLLSQLLQNEGYLVKGALSAKSALRMCQKKKPDLILLDIMMPEVDGYEL 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +Q+K+D   Q+IPVI ++A     D+ R  + G   YI KP  +   +  ++ + G
Sbjct: 70  CRQLKKDPSTQDIPVIFLSALDHVQDKVRAFQIGGVDYIQKPFEVMEVLARVRTHAG 126


>gi|300726408|ref|ZP_07059858.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella bryantii B14]
 gi|299776308|gb|EFI72868.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella bryantii B14]
          Length = 937

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++DN    +  R L++   Y  L+  +G   L +AR+  PD+II DI +  + GLE 
Sbjct: 667 ILIIDDNNDMREYLRILLKAQ-YHVLEAVDGKIGLSMARKQVPDIIICDIMMPVMDGLEF 725

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+ +K+D+    IPVI ++A ++   + +  + G ++YI+KP    + +  I   +
Sbjct: 726 TRALKKDTVTSHIPVILLSARSLDEQKVQGYQEGADSYITKPFQADVLIARIDNLL 781


>gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1]
          Length = 234

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +L    +  +G+       G +AL   R+ +PD+I++D+ L +  G E
Sbjct: 6   RLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDFDGFE 65

Query: 64  ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++           PV+ +TA     D     + G + Y++KP +L   +  I+  +
Sbjct: 66  VVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V IVED  + +++ +  +E SGY     +NG E L   R+  PD +I+D+ L ++ 
Sbjct: 1   MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI KQI+      ++P++ ++A + + D       G + Y++KP S    +  ++  +
Sbjct: 61  GEEICKQIR---LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
            VM573]
 gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
            VM573]
          Length = 1325

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 72/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K+++VEDNE+N ++   L+E +G       NG EALE       D+++MD+Q+  + G+
Sbjct: 992  QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              TK I+ +   + +P++A+TA AM  D ER  + G   ++SKPI +  F + +K+++
Sbjct: 1052 TATKHIRTNGRWKNLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFL 1109



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 52/114 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +    D++  D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E+  ++K            VTA+    + +       +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAI 965


>gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20]
 gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E   K     ++  GY      +G   L+ A ++  DVI++D+ L E++G
Sbjct: 1   MSKVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNYDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E    ++ P+I +TA     D       G + Y+ KP ++   +  I+  + 
Sbjct: 61  LEVARRLRES---KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Paenibacillus polymyxa SC2]
 gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Paenibacillus polymyxa SC2]
          Length = 224

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+    +L    +   G   ++  +G++A+ L  + K D++++DI +  + G
Sbjct: 1   MTRVLVVDDDPHIRELVGHFLRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++E +   ++P++ +TA        +    G + Y+ KP    + +  +K  + 
Sbjct: 61  WELCRKLREQT---DLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
            VM603]
 gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
            VM603]
          Length = 1325

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 72/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K+++VEDNE+N ++   L+E +G       NG EALE       D+++MD+Q+  + G+
Sbjct: 992  QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              TK I+ +   + +P++A+TA AM  D ER  + G   ++SKPI +  F + +K+++
Sbjct: 1052 TATKHIRTNGRWKNLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFL 1109



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 52/114 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +    D++  D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E+  ++K            VTA+    + +       +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAI 965


>gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 233

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D++   ++   ++   G+ A+   NG  A E   +  PD++++D+ L  ++G+E
Sbjct: 8   TILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRSTPDLVLLDLMLPGMNGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +QI+  S    +P+I +TA +   D  +  + G + YI+KP   +  +  I+  + 
Sbjct: 68  VCQQIRRSS---NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLR 122


>gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
 gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+K  +++VED++         ++   Y      NG +A+ LA  HKPD+II+D+ L +I
Sbjct: 1   MMKVSILVVEDDKAIRNFISATLDIHSYNCFTAENGEQAMILATSHKPDIIILDLGLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G++I K+I+        P+I V+A +   D+      G + Y++KP S+   +  I+  
Sbjct: 61  DGVDIIKKIRA---WSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVA 117

Query: 120 IGE 122
           I +
Sbjct: 118 IRK 120


>gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E        L+   G+      NG++A+    ++  D++++D+QL   SG
Sbjct: 1   MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++ S    +PVI +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRQLRQRS---TVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330998135|ref|ZP_08321963.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329569224|gb|EGG51015.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 865

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++ EDNE      +DL+    +  L   +G E L +AR++ PD+II D+ +  + G  
Sbjct: 610 TVLVAEDNEQFRTFMKDLLRQE-FTVLTAADGQEGLAMAREYGPDLIISDVMMPHMDGYA 668

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + +K+D +   IP+I +TA           + G +++I+KP  + +    I++ + +
Sbjct: 669 FCRAVKDDVQCCHIPLILLTAKNSSESRSGAYEAGADSFIAKPFDIDVLHSRIRQLLEQ 727


>gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 224

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  IK   
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|150006467|ref|YP_001301211.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149934891|gb|ABR41589.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 379

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N+ L + L+    +  +   NG EAL  A   +PD+I++D+ + E++G E
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K D E Q IP+I +TA     D  +  K G   +ISKP +    +  +
Sbjct: 75  VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127


>gi|148269592|ref|YP_001244052.1| response regulator receiver protein [Thermotoga petrophila RKU-1]
 gi|147735136|gb|ABQ46476.1| response regulator receiver protein [Thermotoga petrophila RKU-1]
          Length = 122

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D+ +  K+    ++  GY  ++  NG  ALE   +  PD+I++DI +  + 
Sbjct: 1   MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++E    + IPVI +TA   + DE      G    + KP S S F+E +K  +
Sbjct: 61  GFTVLKKLQEKENWKRIPVIVLTAKGGEEDESLAFSLGARKVMRKPFSPSQFIEEVKHLL 120

Query: 121 GE 122
            E
Sbjct: 121 NE 122


>gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 223

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 233

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 1   ML---KKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M+     +++V+D     +  +  +E SG        N   A E+ +   PDVII DI +
Sbjct: 1   MMSDSATILLVDDEPSVRESVQAYLEYSGNLTVKVASNATNAWEILQTIIPDVIISDIMM 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            E+ G +  +++++D   Q IPV+ +TA  M  D  +    GC+AY+ KP         +
Sbjct: 61  PEVDGYQFLEKLRDDPRFQSIPVVFLTARGMTSDRIKGYNAGCDAYLPKPFDPEELEAIV 120

Query: 117 KKYIGE 122
              +  
Sbjct: 121 NNLLER 126


>gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 222

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  D ++ +GY+ +   +G  AL   ++ +PD+I++D  +  + G E 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQRRRPDLILLDAMMPGMDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +QIK+  +   IPV+ +TA           + G   Y+ KPI  +  +  +  ++  A
Sbjct: 73  CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131


>gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 226

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IVED     ++    +E  GY      +G+ ALE   Q    +I++D+ L  +SG+
Sbjct: 4   ARILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVMLPRLSGM 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ ++I+++      PVI +TA     D+      G   Y++KP  +   +  I+  + 
Sbjct: 64  EVLRRIRKEGNT--TPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLR 120


>gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 228

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   Q K D++I+DI +  + G ++
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 68  CFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
           20583]
 gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
           20583]
 gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+   +K+     E   Y  +  +NG EA+E  +   PD+I++DI + ++ 
Sbjct: 1   MGYKILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQTA-PDIILLDINMPQMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+   +    P++ +TA   + D       G + YI KP SL      I  ++
Sbjct: 60  GLEVCRKIR---DKISCPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKELDARITAHL 116

Query: 121 GE 122
             
Sbjct: 117 KR 118


>gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
          Length = 239

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+I+ED+     L +  +   G       +G+  +E A  +  DVII+D+ L ++ GL
Sbjct: 4   KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++++  L  +P++ +T+ + + D+      G + YI+KP S+      +  +I  
Sbjct: 64  EVCQRLRKNHIL--VPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRR 121


>gi|150002641|ref|YP_001297385.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931065|gb|ABR37763.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1349

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KV++VED+E   +     + +  Y  L++ NG EALE      PD++I D+ + E+ GL 
Sbjct: 1090 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1148

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++IK++  L  IPVI +TA   + D     + G +AY++KP  + I  +T    I 
Sbjct: 1149 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTTANLIR 1206


>gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 250

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VED+     L  D     G+      +G   L  A +   D+II+D+ L  + G 
Sbjct: 25  RSILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGF 84

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +Q+++ S     PVI +TA   + D       G + Y+ KP      +  I+  +  
Sbjct: 85  EVLRQLRKRSAT---PVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRR 141


>gi|265753017|ref|ZP_06088586.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_33FAA]
 gi|263236203|gb|EEZ21698.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_33FAA]
          Length = 1331

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED+          +ET  Y  ++  NG EAL++  +    +I+ D+ + E+ G E+
Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               +K D E   IP+I +TA      +    + G + YI KP S    +  I   +
Sbjct: 1143 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLL 1198


>gi|237711589|ref|ZP_04542070.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 9_1_42FAA]
 gi|229454284|gb|EEO60005.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 9_1_42FAA]
          Length = 1331

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED+          +ET  Y  ++  NG EAL++  +    +I+ D+ + E+ G E+
Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               +K D E   IP+I +TA      +    + G + YI KP S    +  I   +
Sbjct: 1143 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLL 1198


>gi|237725951|ref|ZP_04556432.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. D4]
 gi|229435759|gb|EEO45836.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides dorei 5_1_36/D4]
          Length = 1331

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED+          +ET  Y  ++  NG EAL++  +    +I+ D+ + E+ G E+
Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               +K D E   IP+I +TA      +    + G + YI KP S    +  I   +
Sbjct: 1143 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLL 1198


>gi|213961802|ref|ZP_03390068.1| putative DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga sputigena Capno]
 gi|213955591|gb|EEB66907.1| putative DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga sputigena Capno]
          Length = 903

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVEDNE   +  R ++  S Y  ++  NG E  E+A++H PDV+I D+ + +  G +
Sbjct: 655 TVLIVEDNEDMRQFIRYILSDS-YNLIEAENGEEGFEVAKKHLPDVVISDVMMPKTDGFD 713

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K +     IPVI +TA+A+   ++   + G +AYISKP ++ +    ++K I
Sbjct: 714 LCQLLKTNVATNHIPVILLTAYALDEQKQVGFESGADAYISKPFNVKLLKTRVRKLI 770


>gi|212695373|ref|ZP_03303501.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855]
 gi|212662102|gb|EEB22676.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855]
          Length = 1389

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED+          +ET  Y  ++  NG EAL++  +    +I+ D+ + E+ G E+
Sbjct: 1142 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1200

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               +K D E   IP+I +TA      +    + G + YI KP S    +  I   +
Sbjct: 1201 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLL 1256


>gi|167764904|ref|ZP_02437025.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183]
 gi|167697573|gb|EDS14152.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183]
          Length = 1473

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN+      + +     +  ++  NG+  LE ++++ PD+II D+ + E  G+E
Sbjct: 1211 TILIVEDNQELRFFIKTIFIQH-FNVIEAENGIIGLEKSKKYLPDIIISDVMMPEKDGIE 1269

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ED     IP++ +TA +         + G + YI+KP S +     I   I +
Sbjct: 1270 MVRELREDMSTSHIPIVMLTAKSTIESRIEGLESGADDYITKPFSAAYLKARIFNLIDQ 1328


>gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 240

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED           +   GY      +G E +  A     D+II+D+ L  + G+E
Sbjct: 16  RILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLMLPRLDGME 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +E  E PV+ +TA     D+ R    G + Y++KP +L+  +  ++  +  
Sbjct: 76  VIRRLR--NERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRR 132


>gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51]
 gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED+    +L RD ++ +GY      +G   L+ A     D++I+D+ L ++ G
Sbjct: 1   MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLMLPQLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K++++  E   IP+I ++A +   D+ R    G + Y++KP S +  M  I+ ++ 
Sbjct: 61  FEIIKEVRKKLE---IPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|54309357|ref|YP_130377.1| DNA-binding response regulator OmpR [Photobacterium profundum SS9]
 gi|46913793|emb|CAG20575.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum SS9]
          Length = 261

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L +  +    Y      +G E  +  R +  D+I++D+ L    GL 
Sbjct: 15  HLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNEMEQCLRDNSIDLIVLDLMLPGKDGLT 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++       IPVI +TA   + D+    + G + Y+ KP +    +  +K  I  
Sbjct: 75  LCRELR---VHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARVKAVIRR 130


>gi|295084690|emb|CBK66213.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1344

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208


>gi|262280534|ref|ZP_06058318.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258312|gb|EEY77046.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 236

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63
           ++IV+D     ++    ++ +G+  LQ  +  +A ++    +P +I++D  L   +SG++
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K D  L EIPVI +TA   +  + +    G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125


>gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 247

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED+     L    +  +GY      +G  A+  A   +PD+I++D+ L +  G  
Sbjct: 12  TVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFR 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +T++++        PV+ +TA A   D       G + Y++KP  +   +  ++  +  A
Sbjct: 72  LTRELRAQGVY--TPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRA 129


>gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 222

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  D ++ +GY+ +   +G  AL   ++ +PD+I++D  +  + G E 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQRRRPDLILLDAMMPGMDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +QIK+  +   IPV+ +TA           + G   Y+ KPI  +  +  +  ++  A
Sbjct: 73  CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131


>gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
 gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein
           SYNPCC7002_A0851
 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
          Length = 251

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-------DVIIMDIQ 55
            ++++VED  +   +    +E  GY      NG   L + +  +        D++I+DI 
Sbjct: 19  ARILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIM 78

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           L E++GL++ + ++       IP++ ++A A + D     + G + Y++KP SL   +  
Sbjct: 79  LPEVNGLDLCRFLRYQGNT--IPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVAR 136

Query: 116 IKKYIGE 122
            +  +  
Sbjct: 137 CRALLRR 143


>gi|17232372|ref|NP_488920.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134017|dbj|BAB76579.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 443

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++  + +  +G+      +G +ALE  +   PD+I++D+ +  + G E 
Sbjct: 11  ILIVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQIRVPDLILLDVMMPIMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K +K   E  +IPVI +TA      +      G   YI+KP   +  +  I  ++
Sbjct: 71  CKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISSHL 126


>gi|163846005|ref|YP_001634049.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523730|ref|YP_002568200.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667294|gb|ABY33660.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447609|gb|ACM51875.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 493

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 65/116 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+EL   L  ++I       +  + G +AL+LA+QH PD+I++D+ L +++G E
Sbjct: 5   TILIVDDDELMRSLLIEIITPFNLRLITAQRGDQALQLAQQHLPDLILLDVMLPDMNGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + +++++D    +IP++ +TA   +  +    + G + +I+KP         I   
Sbjct: 65  VCQRLRDDPATAQIPIVMITALNDREAKIHGFEAGADEFITKPFDPGELQARINTV 120


>gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 233

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +D+    KL R  ++  GY  L+  +G+EA E   +   ++ ++DI +    G +
Sbjct: 11  RVLVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEPIELAVVDIMMPNKDGYQ 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ED    ++PVI +TA     D+E   + G + Y++KP      +  IK  +  
Sbjct: 71  LCREIRED---YDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRR 126


>gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 230

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++IVED+    +L RD +E + Y      +G   L+ A Q    +I++D+ L +  G
Sbjct: 1   MKRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ + ++     + +P+I V+A     D+ R    G   YI KP + S  +  +K  I
Sbjct: 61  FQVCRNLRAS---KNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQI 116


>gi|260885496|ref|ZP_05735136.2| DNA-binding response regulator/sensor histidine kinase [Prevotella
           tannerae ATCC 51259]
 gi|260852493|gb|EEX72362.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           tannerae ATCC 51259]
          Length = 952

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I+EDN+         + +  Y      NG   L+ A +  PD+II D+ + E+ GL+
Sbjct: 669 RILIIEDNKDVAAYIGSQLTSR-YSVCYAENGKVGLQKAEELVPDLIITDLMMPEMGGLD 727

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+ +  +  IP+I +TA   + D  +  + G +AY+ KP +       ++K + +
Sbjct: 728 VCRAIRTNEIVNHIPIIVITAKNTEEDRIKGLEAGADAYLVKPFNSEELRTRVEKLLEQ 786


>gi|256842620|ref|ZP_05548121.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256735757|gb|EEU49090.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1321

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+        L++   Y+     NG +AL +AR++ PD+I+ D+ + E+ G 
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI------ 116
            E+   +K D E   IPV+ +TA   + D     + G +AYI+KP S+++    I      
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187

Query: 117  KKYIGEA 123
            +  +  A
Sbjct: 1188 RALLRRA 1194


>gi|254410981|ref|ZP_05024759.1| hypothetical protein MC7420_459 [Microcoleus chthonoplastes PCC
           7420]
 gi|196182336|gb|EDX77322.1| hypothetical protein MC7420_459 [Microcoleus chthonoplastes PCC
           7420]
          Length = 127

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 67/119 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++VED+     L   L+E  G   +   +G+EALE  +Q  P+++I+DI L  ++G
Sbjct: 1   MSTVLVVEDDLTQQHLLSKLLERVGLTVIVAGDGVEALEKIQQFHPNLVILDIVLPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++K + E + IPV+  +A     D     K G +AY++KP      +ET+KK +
Sbjct: 61  YEVCRRLKSEPETENIPVLMCSAKKEDFDRYWGMKQGADAYLAKPCHPQEIVETVKKLL 119


>gi|171914581|ref|ZP_02930051.1| putative two component system histidine kinase/response regulator
           fusion protein [Verrucomicrobium spinosum DSM 4136]
          Length = 380

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D   N+++  +L+   G+  +    G EAL       PD+I++D+ + E+ G E+
Sbjct: 14  VLVVDDQVRNLQMVTNLLTHRGFEVITASGGREALNCLATKIPDLILLDVIMPEMDGFEV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +QIK +     +PV+ ++  A +    R  + G   YI+KP + +  +  +  ++
Sbjct: 74  CRQIKSNRATSHVPVVFLSGSADQSSIVRGFETGGVDYIAKPFNKAELLARVLTHV 129


>gi|237724054|ref|ZP_04554535.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|265755338|ref|ZP_06090108.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229437514|gb|EEO47591.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
 gi|263234480|gb|EEZ20070.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1351

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN       ++ +    Y  ++ + G+E  ++A +  P++II D+ +  ++G+E+
Sbjct: 1102 ILLVEDNTEFRNFLKEELNKW-YQVIEAKEGLEGEKIAIERDPNLIISDVMMPIMNGIEL 1160

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K++K + +   IP+I +TA     D+    + G ++Y+SKP +  I +  I+K I +
Sbjct: 1161 CKRLKNNIQTSHIPIILLTARISDEDKMTGYEAGADSYLSKPFNFDILLTRIRKLIEQ 1218


>gi|255533889|ref|YP_003094261.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255346873|gb|ACU06199.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 1374

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED      L R++++   Y+  +   G+EAL    +  PD+II D+ + +++GLE+
Sbjct: 1119 ILLVEDEPELRYLIRNVLKEQ-YVVYEAGTGVEALAFLYKTLPDLIISDVMMPDMNGLEL 1177

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K+   + +IP + ++A   + ++    + G +AYI KP  ++  +  I+K +
Sbjct: 1178 CRTVKQTPAMAQIPFVILSARGSEDNKAEGYELGADAYIPKPFQINYLLVRIRKLL 1233


>gi|94971588|ref|YP_593636.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553638|gb|ABF43562.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 247

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++++D+    ++  + +   G+     RNG + L+ A + K D++I+D+ L  ++G  + 
Sbjct: 23  LLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSAAETKYDLVILDVMLPGMNGFTLL 82

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            Q++  +    +PVI +TA     D  +  + G + Y+ KP      +  ++  +  A
Sbjct: 83  SQLRRRTP---VPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRA 137


>gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 234

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+ +  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|297538855|ref|YP_003674624.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258202|gb|ADI30047.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 228

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V++++D+   +++ ++ IE   +      +G+   ++  +   D++++D+ +  ++G
Sbjct: 1   MQTVLLIDDDVELVEMLKEYIEQENFSVQVAHDGIAGAQMLLEQPFDIVVLDVMMPRLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K I++ S    +PVI +TA     D     + G + Y+ KP S    +  I+  + 
Sbjct: 61  IETLKAIRQHS---NVPVIMLTAKGDNTDRIVGLELGADDYVPKPSSPRELVARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 274

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 61/123 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  +  VED+E   +L    +E+  +      +G    ++  +  PD++++DI L   S
Sbjct: 46  MMPCIYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEKKIPDLVLLDIMLPGES 105

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI K+I+      ++PVI +TA   + D  +    G + Y++KP  +   +  I+  +
Sbjct: 106 GIEILKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVL 165

Query: 121 GEA 123
             +
Sbjct: 166 RRS 168


>gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
 gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     ++  G+  L+  +G EALE+ + ++  ++IMD+ + ++ G
Sbjct: 1   MQTILVCDDDKEIVEAIEIYLQQEGFHVLKAYDGEEALEILKNNEVHLLIMDVMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E+S    IP+I ++A     D+      G + Y+ KP +    +  +K  + 
Sbjct: 61  IRATLKIRENS---SIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 230

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|32475887|ref|NP_868881.1| two-component system response regulator [Rhodopirellula baltica SH
           1]
 gi|32446430|emb|CAD76258.1| two-component system response regulator [Rhodopirellula baltica SH
           1]
          Length = 239

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I ED+        +L+   GY      +G+ A ++    K D++ +D+ +   SG
Sbjct: 1   MPRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + ++ +      PVI +TA   + D+    + G + YISKP      +  +K  + 
Sbjct: 61  FDVCRLLRAEDH--RTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D E    L    +E +G+       G E LE  +++ PD+I++DI +    G  +
Sbjct: 9   ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIMMPGEDGFSV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++   E   +PVI ++A   + D+ +  + G + YI KP S       I   +  +
Sbjct: 69  CERVRAQYE---VPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRS 124


>gi|88859132|ref|ZP_01133773.1| putative two-component response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88819358|gb|EAR29172.1| putative two-component response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 312

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 70/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +++  +++V+D+ LN+ + +  ++   Y  L   NG EAL++   +  D+I++DI++ ++
Sbjct: 14  MERALILVVDDDPLNLVVLKQTLQKY-YRVLSASNGQEALDVVSSNTIDLILLDIKMPKM 72

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K++K   + Q IPVI ++A     DE +  + G   YI+KP S  I +  +K  
Sbjct: 73  DGYQVLKKLKNSPQTQSIPVIFISANDSHADEAKGLEMGAMDYITKPFSPPIVLVRVKNQ 132

Query: 120 I 120
           +
Sbjct: 133 L 133


>gi|327312949|ref|YP_004328386.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Prevotella denticola F0289]
 gi|326946295|gb|AEA22180.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola F0289]
          Length = 896

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R  +    Y   +  +G   LELAR+  PD+++ DI +  + GLE 
Sbjct: 655 VLVIDDNSDIRTYLRSALSPM-YKVSEAVDGKSGLELARRIMPDLVVSDIMMPVMDGLEF 713

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K+D  +  IPVI +TA ++        + G +AYISKP SL + +  I   I
Sbjct: 714 CRQLKQDPAVSHIPVILLTARSLDEQRAEGYEYGADAYISKPFSLRLLLSRIDNLI 769


>gi|319944548|ref|ZP_08018818.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
 gi|319742184|gb|EFV94601.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
          Length = 248

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+     L  + +  +G      R+  E  ++  + +PD+II+D+ +    GL 
Sbjct: 16  HVLVVDDDAEIRTLLAEYLSQNGIRVTVARDATEMRQVFDEARPDIIILDLMMPGEDGLT 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  S    +PVI +TA A + D     + G + Y+ KP S    +  IK  +  
Sbjct: 76  VCRELRSRS---NVPVIMLTARADEVDRIIGIEMGADDYLGKPFSPRELLARIKGVLRR 131


>gi|282890755|ref|ZP_06299275.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499348|gb|EFB41647.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 410

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D  L   + R ++  + Y  L  +NG EALE  ++ K  ++I D+ +  + G 
Sbjct: 7   KTILVVDDTPLQAIMLRRVLVQANYDVLTAKNGAEALEFLKKQKFALVITDVNMPIMDGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + IK D  L+  PVI  T  A   D  +  + G + YI+KP +  + +  IK+ +G 
Sbjct: 67  KLCRIIKTDLNLRSTPVIICTVLASPEDLIKGIEAGADNYITKPWNNDLLLLRIKELVGR 126

Query: 123 A 123
           +
Sbjct: 127 S 127


>gi|265751167|ref|ZP_06087230.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263238063|gb|EEZ23513.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1270

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN+  +   R L+    Y      NG EAL+L  +  PD++I D+ +  + G+E
Sbjct: 1020 HILVVDDNQDLLDYLRMLLAPR-YQITCALNGKEALDLLSELMPDLVISDVMMPVMDGME 1078

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++     +PV+ +TA    GD     + G + Y++KP S  I    I   +
Sbjct: 1079 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLL 1135


>gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
 gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
          Length = 239

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 10  MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 69

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 70  GLEVVRIIREKSA---VPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGI 126

Query: 121 GEA 123
             +
Sbjct: 127 RRS 129


>gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +     ++  GY      +G+  L  AR+  PD+I++D  L  ISGL+I
Sbjct: 6   ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K++++     ++P+I +TA     D       G + YI KP +L   +  ++  +  
Sbjct: 66  CKRLRQTG--SKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121


>gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 221

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     +  ++++ SGY+     +G+ A+E+ R+ + D+II+D+ L +I 
Sbjct: 1   MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S    +P+I +TA   + DE +  +   + YI KP S+++ ++ ++  +
Sbjct: 61  GFVVCEIIRKES---SMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
 gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
          Length = 240

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DN+  +    +L++  GY  L+  +GMEAL++  +   D+I++D+ +  ++GL 
Sbjct: 5   KILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENVDLILLDVMMPRLNGLS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +++E S    IPVI ++A   + D+      G + YI KP + +  +  +K ++  
Sbjct: 65  ALMKLREKSR---IPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRR 120


>gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
 gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
          Length = 246

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED      + R  +   GY      +G++A+  A +   D I++D+ L  I G E
Sbjct: 2   RVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLMLPGIDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        PV+ +TA     D  R    G + Y+ KP S       ++  +  
Sbjct: 62  VCRRLRAGHRWA--PVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 118


>gi|118580478|ref|YP_901728.1| response regulator receiver protein [Pelobacter propionicus DSM
           2379]
 gi|118503188|gb|ABK99670.1| response regulator receiver protein [Pelobacter propionicus DSM
           2379]
          Length = 217

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D   N++L    +    Y      NG EAL +A   +PD+I++DI + E+ G 
Sbjct: 4   QRILIVDDTPENLQLLYRTLRDE-YDLYGATNGREALMIAAAQQPDLILLDIMMPEMDGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K   EL+++PV+ +TA +   DE R  + G   YI+KP   ++    I  ++
Sbjct: 63  EVCRRLKSSEELRDVPVLFLTALSEDSDELRGLEIGAVDYITKPFKTAVVKRRIDTHL 120


>gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 231

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 69/120 (57%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL RD +  + +  ++  +G EAL +  + K   +II+D+ + ++ G 
Sbjct: 5   KILVVDDEARMRKLVRDFLIRNDFDVVEAGDGEEALNVFYEDKNVALIILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+++S+   +P+I +TA + + DE    + G + YI+KP S  I +  ++  +  
Sbjct: 65  QVCREIRKESK---VPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRR 121


>gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [uncultured Desulfobacterium sp.]
          Length = 242

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   +L R  + + GY      +G EA++LA     D+I++D+ L  I G++
Sbjct: 16  RILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEPFDLIVLDLMLPGIGGID 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++       IP+I +TA + + D         + Y++KP S  I    I   +  
Sbjct: 76  VAKRLRSVHNTINIPIIMLTAKSEETDIISGLTL-ADDYVTKPFSPKILSARISAILRR 133


>gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 246

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 6/126 (4%)

Query: 1   MLKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M K     +++V+D     +L    +  +G+      +G EA+E+  +  P++I+MD+ L
Sbjct: 1   MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I G  +T++I+++    ++PV+ +TA     D+      G + Y++KP SL   +  I
Sbjct: 61  PDIDGFTVTRRIRQNGI--KVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARI 118

Query: 117 KKYIGE 122
           +  +  
Sbjct: 119 RAILRR 124


>gi|223046625|gb|ACM79363.1| GAF sensor hybrid histidine kinase [Arthrospira platensis FACHB869]
          Length = 785

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           ++V++V+D+  N+     L+E          NG +ALE   Q +  D+++MDI + E+ G
Sbjct: 663 RRVLVVDDDVRNIFAITSLLEAQDIDVRFAENGRQALERIEQDRDIDLVLMDIMMPEMDG 722

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               + I+E  +   +P++A+TA AM+GD  +  + G   YI+KPI     +  ++ ++
Sbjct: 723 YAAIRAIREKPQWSTLPIVALTAKAMQGDRAKCIEAGATDYITKPIDAEQLLSLLRVWL 781



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IVE +E   ++  D+    G+  L   +G E LELAR   P  I +++ L ++ G  + 
Sbjct: 399 LIVESDESFAQILYDVAREHGFRTLVALSGAEGLELARALTPAAITLELTLPDMDGWVVL 458

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            ++K D   + IPV  ++A     DE R RK G  A + KP +       ++ 
Sbjct: 459 DRLKHDLATRHIPVQIISALG---DEHRARKRGAIACLHKPANAEWLARAMQA 508



 Score = 58.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 11  NELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70
           +E   +     I       +   +G EALE       D  ++ +++  +SGLE+ ++   
Sbjct: 525 DERQRERLAAFIGNGDVKVVAVGSGEEALERLDGELFDCAVVALKMAGMSGLELIRRATA 584

Query: 71  DSELQEIPVIA-VTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            + L+ +P++  V A     +E  +     ++++ K + S    +E
Sbjct: 585 ITGLRHLPILVYVEADPTAAEEAELLSL-AQSFVVKSVHSPERMLE 629


>gi|209547395|ref|YP_002279313.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209538639|gb|ACI58573.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 2099

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V++V+D+  N+     ++E  G   L    G EA+++        +++MDI +  + G 
Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + I+ +   + +P++A+TA AMKGD E+  + G   Y++KP++    +  ++ ++  
Sbjct: 2040 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099



 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED+    ++  DL   SG+  L    G +AL LA+ ++P  I +DI L ++ G  + 
Sbjct: 1714 LVVEDDAHYARVLVDLARDSGFKVLVAMRGSDALSLAQDYRPAAISLDIFLPDMLGWTVL 1773

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
             Q+K++ + + IPV  ++   +  D +     G  A++SKP +       +  +K Y
Sbjct: 1774 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAY 1827



 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++VEDNE        L+           +G EAL   RQ  PD +++D+ L ++SG 
Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALAALRQDPPDCVVLDLSLPDMSGF 1892

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            ++ +QI++D+E+ E+PV+  T   +  +E+        + + K + S    ++
Sbjct: 1893 DVLEQIRDDAEIGEVPVVVFTGRELSPEEDATLHSMARSVVVKGVESPERLLD 1945


>gi|330828750|ref|YP_004391702.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
 gi|328803886|gb|AEB49085.1| Sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
          Length = 1131

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D  +N+ + R L++  GY  L + +G +AL    +   D+I++D+ +  +SG ++
Sbjct: 724 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAEEPVDLILLDVMMPTLSGFDV 783

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---- 120
            +++++      +PV+ +TA     D E     G   Y+ KP         +K  +    
Sbjct: 784 CRRLRQQHPKDMLPVLLLTALNQPKDIEEGFGAGANDYLVKPFCKEELFARVKALLEAKA 843

Query: 121 GEA 123
           G A
Sbjct: 844 GRA 846


>gi|325300130|ref|YP_004260047.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324319683|gb|ADY37574.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1442

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN+       D++    Y  L   NG    ++AR+  PD+I+ D+ +  + GLE+
Sbjct: 1181 ILIVEDNDELRTSLADILSVR-YRVLTAVNGEAGWDMARKELPDMILTDVMMPVMDGLEM 1239

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +Q+K D+E+  IP+I ++A A   D  +    G + YI+KP S +     I +   +
Sbjct: 1240 VRQLKNDAEVCHIPIIVLSAKASLDDRIQALDQGIDDYITKPFSAAYLEARIGQVFRQ 1297


>gi|312877360|ref|ZP_07737325.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795834|gb|EFR12198.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 234

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V +V+D +  + L  + +   GY      NG   LE   + +PD++I+DI L +I G E
Sbjct: 5   TVYVVDDEKDILDLVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIMLPDIDGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+I+++S   ++P+I ++A   + D+    + G + YISKP SLS     IKK +  
Sbjct: 65  ICKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120


>gi|254413334|ref|ZP_05027105.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179954|gb|EDX74947.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 864

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++ ++D   N+ L  +++   GY      NG  AL+    + PD+I++DI + ++ G +
Sbjct: 12  TILTIDDTPDNLHLLTEMLSAQGYKIRIIPNGRLALKSIANNPPDLILLDIIMPDMDGYQ 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +Q+K   + Q IPVI ++      D+ +  + G   YI+KP  +   +  ++  + 
Sbjct: 72  VCQQLKASPKTQNIPVIFLSGLNETFDKVKAFEVGGVDYITKPFQVQEVLARVESQLR 129


>gi|190894793|ref|YP_001985086.1| putative two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
 gi|190700454|gb|ACE94536.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
          Length = 2100

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V++V+D+  N+     ++E  G   L    G EA+++        +++MDI +  + G 
Sbjct: 1981 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINTEPSVAIVLMDIMMPGMDGY 2040

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + I+ +   + +P++A+TA AMKGD E+  + G   Y++KP++    +  ++ ++  
Sbjct: 2041 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2100



 Score =  104 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED+    ++  DL   +G+  L    G +AL LA+++KP  I +DI L ++ G  + 
Sbjct: 1715 LVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALTLAQEYKPSAISLDIFLPDMLGWTVL 1774

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
             Q+K++ + + IPV  ++   +  D +     G  A++SKP +       +  +K Y
Sbjct: 1775 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAY 1828



 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VED+E        L+           +G EAL   R++  D +++D+ L ++SG 
Sbjct: 1834 KQLLLVEDDEAERLSVTALLGHDDIDITSVGSGSEALAALRRNSADCVVLDLSLPDMSGF 1893

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ +QI++D E+ E+PV+  T   +  +E+        + + K + S    ++
Sbjct: 1894 EVLEQIRDDVEIGEVPVVVFTGRELSAEEDATLHSMARSVVVKGVESPERLLD 1946


>gi|14133650|gb|AAK54090.1|AF362371_1 histidine kinase DhkI [Dictyostelium discoideum]
          Length = 1736

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 7/125 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57
            +KV++ EDN +N KL + L+   G+     ++G +AL+   + K      D I+MDIQ+ 
Sbjct: 1550 QKVLVAEDNPMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSILYDCILMDIQMP 1609

Query: 58   EISGLEITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             +SGLE T  I+E    E   IP+IAVTA AMKGD+E+  + G + Y++KPI+  +  E 
Sbjct: 1610 ILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINPKLLYEV 1669

Query: 116  IKKYI 120
            I   I
Sbjct: 1670 INTQI 1674


>gi|315445373|ref|YP_004078252.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1]
 gi|315263676|gb|ADU00418.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1]
          Length = 1386

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 57/116 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ +DN    +    L+ + GY      +G +ALE  R   PD++I D+ +  + GL
Sbjct: 629 ARVLVADDNADMREYLGRLLRSDGYAVEAVVDGRQALEAIRAEPPDLVISDVMMPRLDGL 688

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +  +++ D     +PV+ ++A A +       + G + Y+ KP + +  +  ++ 
Sbjct: 689 GLVSELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRA 744


>gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM
           519]
 gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii]
          Length = 228

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D  L +K  +  +E  G+I   + +G +ALE  +    D+I++D+ L  I G
Sbjct: 1   MANILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDYDIILLDLMLPIIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++E     ++P+I ++A      + +  + G + YI+KP ++      +   + 
Sbjct: 61  FEVCKKVRE---TSDVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 219

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED +   +     +    Y      +G   L+ A     D+II+D+ L  I+G
Sbjct: 1   MTNILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKALNKSYDLIILDLMLPNING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +QI+++      P+I +TA     D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LEICRQIRQE---YSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 229

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVED ++  ++ +D   +  Y+  + R+G EAL +  + + D++I+DI L E+ 
Sbjct: 1   MSKIILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I++     E+P+I +TA   + D     + G + Y++KP S  I +   K+ +
Sbjct: 61  GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117


>gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 241

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L +  +E  G+     R+G E   L       ++++D+ L    GL 
Sbjct: 8   HILVVDDHADIRDLLKRFLEQHGFKVTCARDGKEMKRLLENGHFTLLVLDLMLPGEDGLT 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++  S L   PV+ +TA   + D     + G + Y++KP +    +  I+  +  A
Sbjct: 68  LCRDLRARSSL---PVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRAVLRRA 124


>gi|218887570|ref|YP_002436891.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758524|gb|ACL09423.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1071

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 6/123 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++V+D+E+N+   + L+   GYIA +  +G +ALE+  +   D ++MDIQ+ ++ G+E
Sbjct: 941  RILVVDDDEVNLITAQRLLTRLGYIADRAASGRQALEMLGRDHYDAVLMDIQMPDMDGME 1000

Query: 64   ITKQIKEDSEL------QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             T+QI+    +        +PV+A+TA AM GD ER    G   Y++KPI +      ++
Sbjct: 1001 ATRQIRMREAVLPGTTPPWVPVLALTAHAMLGDRERFLAAGMNDYLAKPIEIDQLDARLR 1060

Query: 118  KYI 120
             ++
Sbjct: 1061 AHL 1063


>gi|330504989|ref|YP_004381858.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328919275|gb|AEB60106.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 778

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 59/117 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVEDN +N  + R ++   GY      NG EALEL R    D +++D Q+  + G  
Sbjct: 648 TVLIVEDNAINQLVTRGMLLKLGYRVRTADNGAEALELLRGESVDAVLLDCQMPVMDGFA 707

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + I+      ++PV+A+TA +  GD ER    G   Y++KP+        +  ++
Sbjct: 708 TCRAIRALPGCADVPVLAITAHSHSGDRERCLAAGMSDYLAKPVKFEELRVLLHDWV 764


>gi|307823560|ref|ZP_07653789.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307735545|gb|EFO06393.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 966

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 65/112 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++VEDN +N ++ ++ +E  G+      +G +A++  R    D ++MD+++  + G 
Sbjct: 706 AKLLLVEDNHINQQIAKETLEQEGFEVSIASDGRDAVQKIRTCYFDAVLMDLEMPIMDGY 765

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
           E T+ I+ +++  ++P+IA+TA AM    E+    G   Y++KPI +   + 
Sbjct: 766 EATRIIRSEAQFSDLPIIAMTAHAMNDVREKCLHIGMNGYVTKPIDVDELLA 817



 Score = 96.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQEI 59
           K ++V+ +E +       +++  +       G +A++L      +    +++MD  L ++
Sbjct: 554 KALVVDSDETSRNALCLHLKSLFFQVTSVSTGEQAIQLLENACAEDPYRLVLMDWNLPKM 613

Query: 60  SGLEITKQIKEDSELQEIP-VIAVTAFAMKG--DEERIRKGGCEAYISKPISLSIFMETI 116
            G+ + + IK   E+  IP +I VT  + +     +R +    + +++KP+  S     +
Sbjct: 614 DGISVARHIKNSLEIACIPHIIIVTTHSREDVVHVQRSKDLNLDGFLAKPVHASALFSAV 673


>gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 231

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED E        L+   G+  +   +G  AL    ++  D++++D+ L  +SG
Sbjct: 1   MITILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKNDIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K++++   +  +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKRLRK---VSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 234

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    + + GY   +  N  E L++  +    ++++DI +  + GLE+
Sbjct: 6   ILVVDDEKEIADLVEICLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGLEM 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      IP+I ++A +   D+      G + Y+ KP +       +K  +  
Sbjct: 66  CRKIRE---TNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120


>gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
 gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
          Length = 225

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
            K+++V+D     KL RD +   GY  L+  +G+EA+++   +    ++I+D+ +  + G
Sbjct: 4   AKILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEKDISLLILDVMMPRMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+E S+   +P+I +TA + + DE +    G + YISKP S  I +  +   + 
Sbjct: 64  WQVCREIRESSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|86360995|ref|YP_472882.1| two-component sensor histidine kinase/response regulator hybrid
            protein [Rhizobium etli CFN 42]
 gi|86285097|gb|ABC94155.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CFN 42]
          Length = 2099

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V++V+D+  N+     ++E  G   L    G EA+++        +++MDI +  + G 
Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINTEPSVAIVLMDIMMPGMDGY 2039

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + I+ +   + +P++A+TA AMKGD E+  + G   Y++KP++    +  ++ ++  
Sbjct: 2040 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099



 Score =  104 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED+    ++  DL   +G+  L    G +AL LA+++KP  I +DI L ++ G  + 
Sbjct: 1714 LVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALTLAQEYKPSAISLDIFLPDMLGWTVL 1773

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
             Q+K++ + + IPV  ++   +  D +     G  A++SKP +       +  +K Y
Sbjct: 1774 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGRALSRLKAY 1827



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE        L+           +G EAL + RQ   D +++D+ L ++SG 
Sbjct: 1833 KQLLLVEDNEAERMSVTALLGHDDIDITSVGSGSEALAVLRQGSADCVVLDLTLPDMSGF 1892

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ +QI++D+E+ E+PV+  T   +  +E+        + + K + S    ++
Sbjct: 1893 EVLEQIRDDAEIAEVPVVVFTGRELSPEEDATLHSMARSVVVKGVESPERLLD 1945


>gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2142

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +KV++V+D+  N+     ++E  G       +G E + L  +  + ++++MD+ + E+ G
Sbjct: 2008 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESGAEGISLLEKDTEVELVLMDVMMPEMDG 2067

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +  + I+       +P++A+TA AMKGD E+  + G   YI+KP+ +   +  ++ ++
Sbjct: 2068 YQAMRAIRGMERFAHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 2126



 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED++++ +   +L+ +     +      +A E     + D ++MD+ L ++ G ++ 
Sbjct: 1865 LIVEDDDVHRQALTELLGSEDVQTVAVSTAAQAQEAIAGRRFDCMVMDLGLPDLPGADLL 1924

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            +Q+  +      P I  T   +   +E   +   EA I K   S    +E
Sbjct: 1925 RQLHAEHGASTPPAIVYTGRELTRAQETELRRLAEAIIVKDAQSPERLLE 1974



 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 18   FRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77
             R   +  G+  L +     ALE+AR  +   + +D+ L +++G  +  ++K D+  + +
Sbjct: 1755 LRAAAQGVGFKLLVSTEAESALEMARNARTVAVAVDLDLPDMAGWVVLDRLKHDAATRAL 1814

Query: 78   PVIAVTAFAMKGDEERIRKGGCEAYI 103
            PV  V+    +   +R    G   ++
Sbjct: 1815 PVYTVSG---EDHRDRSLTLGALGHL 1837


>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
 gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
          Length = 833

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +N ++   L++  G++     NG  AL++ +    D+I+MD+Q+  + G  
Sbjct: 709 RILVVEDHPINRQVAVGLLKKLGFVPEVAENGEIALKMMQNQAYDLILMDLQMPVMDGYS 768

Query: 64  ITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ +++      +  P+IA+TA A+ GD ER  + G + Y++KP+   + M  + K++ 
Sbjct: 769 TTRTVRQWEREGRRRTPIIAMTAHALSGDRERCAEAGMDDYLAKPVKAELLMAVLGKWLP 828

Query: 122 E 122
           +
Sbjct: 829 K 829


>gi|299139599|ref|ZP_07032773.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598527|gb|EFI54691.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 251

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++++D     +  R     +GY      +G+  L +     PD+++ D+ + ++ G+
Sbjct: 13  KKILVIDDEPSITRALRASFLANGYDVRTAHDGIAGLHVLEDWGPDLVVTDLAMPDMDGI 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           EI +Q++  S    IP+I ++       + R    G + Y++KP S+   +  ++  
Sbjct: 73  EICRQVRSKS---SIPIILLSVRDDTESKIRALDAGADDYVTKPFSIDELLARVRTA 126


>gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
 gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
          Length = 876

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++DN       R ++    Y   +  +G   LEL R+  PD+++ DI +  + GLE 
Sbjct: 635 ILIIDDNSDIRTYLRSVLSQK-YNVSEASDGKRGLELVRRTVPDIVLSDIMMPVMDGLEF 693

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K D  +  IPVI +TA +M        + G +AYISKP SL + +  I+  I
Sbjct: 694 CEQLKTDKAISHIPVILLTARSMDEQRAEGYEHGADAYISKPFSLRLLLSRIENLI 749


>gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
 gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
          Length = 1390

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 55/116 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++I +DN         L+  +GY      +G +ALE  R   PD+++ D+ +  + GL
Sbjct: 637 ARILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAELPDLVVSDVMMPGLDGL 696

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           E+   ++ +S    +PV+ ++A A +         G + Y+ KP + +  +  +  
Sbjct: 697 ELVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHA 752


>gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
 gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
          Length = 243

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    +L    +   GYI     +  +      +++PD+I++D+ +    GL 
Sbjct: 5   KILVVDDDAKLRELLTRYLTQQGYIVETLPDPKDLDRKLARNRPDLIVLDVMMPGEDGLA 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   E   +PVI +TA     D     + G + Y+ KP +       I+  +  
Sbjct: 65  VVRRLRAQGET--LPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRR 121


>gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 222

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +   ++ +  +E  GY      +G + LE  + H  D++++D+ L E+SG
Sbjct: 1   MARILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+    +   P+I +TA     D+      G   YI+KP  +   +  ++  + 
Sbjct: 61  LEVLRRIRMTDPV--TPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLR 118


>gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 245

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L    +   G+      NG EAL + R+ +PD +++DI L ++ GL 
Sbjct: 21  RVLVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIMLPDMDGLT 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++  +EL E+PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 81  LLGRVR--NELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRS 138


>gi|190573534|ref|YP_001971379.1| putative two-component system, response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|190011456|emb|CAQ45074.1| putative two-component system, response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 242

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+     L  + +  +GY      +G    +L  +   D+I++D+ L    G
Sbjct: 7   MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDG 66

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++  S     PVI +TA A   D     + G + Y++KP      +  I+  + 
Sbjct: 67  LTLCRDLRARS---NTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLR 123

Query: 122 E 122
            
Sbjct: 124 R 124


>gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
 gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
          Length = 245

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 54/116 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E    A+Q  PDV+I D+ +  + G  
Sbjct: 20  RLLLVDDEPGLRTAVQAYLEDEGFDVATAVDGEEGFTKAQQMLPDVVISDVMMPRLDGYG 79

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + K++++D  L   PVI +TA  M  D  +    G + YI KP      +  ++  
Sbjct: 80  LLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNV 135


>gi|103486250|ref|YP_615811.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976327|gb|ABF52478.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 244

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D     +   + +   G+      +  EA  + R    D+++ DI +    G
Sbjct: 6   MPRILLIDDEPSIREPLGEYLTAQGFAVTDAASAAEARSVLRAKSVDLVVSDIMMPGEDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L +T+ ++E      IPVI +TA A   +     + G + Y+ KP +    +  I+  + 
Sbjct: 66  LSLTRHLRE---TSSIPVILLTARAEDTERIIGLEIGADDYVVKPFNPRELVARIRTVLR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 230

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED+     L    +E +G+      +G   L  A +   D++++D+ L  +SG
Sbjct: 1   MARILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGHDLLVLDVMLPGVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++++         V+ +TA A + D     + G + Y++KP SL      ++  + 
Sbjct: 61  FEIVERLRRRPGYPR--VLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 232

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
              +++V+D     +  +  +E SG        N  +A  +  +  PDVII DI + E+ 
Sbjct: 4   SATILLVDDEPSVRESVQAYLEYSGDLTVKVASNATDAWRILEKITPDVIISDIMMPEVD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  +++++D   Q IPVI +TA  M  D  +    GC+AY+ KP         +K  +
Sbjct: 64  GYQFLEKLRDDPRFQGIPVIFLTARGMTSDRIKGYNSGCDAYLPKPFDPEELEAIVKNLL 123

Query: 121 GE 122
             
Sbjct: 124 ER 125


>gi|160895287|ref|ZP_02076058.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
 gi|156862980|gb|EDO56411.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
          Length = 229

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I +D +  +   +  ++TSGY   +  NG EALE  ++H   +++MDI + E+ G
Sbjct: 1   MYNILICDDEKDIVSALKIYLKTSGYNIYEAYNGKEALEQIKEHDIHLVLMDIMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +    +I+E++    +PVI +TA +   D+    + G + YI+KP +    +  +K  + 
Sbjct: 61  ITAMLKIREET---NLPVILLTAKSEDTDKILGLEVGADDYITKPFNPVEVIARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
            6803]
 gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
            6803]
          Length = 1209

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VEDN +N ++   ++E  GY      NG+EAL++  Q   DVI+MD+++ E+ GL 
Sbjct: 937  RILLVEDNNINQRVALLMLEKLGYRPDIAGNGLEALQVLHQASYDVILMDVEMPEMDGLS 996

Query: 64   ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             TK I++D    E P +IAVTA+AM+GD E     G   YI+KPI  +  ++ +++ 
Sbjct: 997  ATKAIRQDFPADEQPWIIAVTAYAMQGDRETCLAAGMNDYITKPIRENDLLDALQRI 1053



 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
           K+++IV+DN+L+ +  + L+   G  A  T +G EA    RQ    D+ I+D+Q++E+ G
Sbjct: 776 KRLLIVDDNQLSCEGLKQLVTAWGLQAQATTSGWEAFSWLRQGECFDLAIIDLQMEEVDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVT 83
           L++ + ++     + +P++ +T
Sbjct: 836 LQLAEALRTLPTGESLPLVILT 857


>gi|332975405|gb|EGK12298.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)]
          Length = 230

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+EDN   +       E  GY      NG   L L  +++ DVI++D+ L  ++G
Sbjct: 1   MHKILIIEDNPDIVANIYAFFEPKGYELDNAHNGPSGLSLLAENQYDVILLDVMLPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + ++E   ++  PV+ +TA     D+      G   Y+ KP SL      +K  + 
Sbjct: 61  TELCRTLREKLHIK-TPVLMLTARDTISDKVAGFDSGANDYLVKPFSLVELEVRVKALLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED        +  +E SGY     RNG++   L  +   D++I+D+ L  + G +
Sbjct: 2   RILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +++ S     PV+ +TA     D  R  + G + Y+ KP S +  +  ++  +  
Sbjct: 62  LVQVVRQRS--AHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRR 118


>gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208]
          Length = 222

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+   +KL    +   G+  L+  +G+EA ++    +  + ++D+ +  + G E+
Sbjct: 1   ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGFEL 60

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+      +IPVI +TA     D+ R  + G + Y++KP      +  I+  +  +
Sbjct: 61  CQKIRA--SFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 117


>gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +L ++ +E  G+      +G + L LAR  +   I++D+ L  +SG +
Sbjct: 2   RILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVMLPGLSGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E       P++ +TA   + DE      G + Y++KP S  + +  ++  +  
Sbjct: 62  VCSRLREAGVW--TPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRR 118


>gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 226

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E        L+   G+      NG++A+    ++  D++++D+QL   SG
Sbjct: 1   MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++ S    +PVI +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRQLRQRS---SVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 225

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+DN+    +    +E S +   + +NG EALE  +  K  ++I+DI + E+ 
Sbjct: 1   MNEKILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K I      ++ P+I ++A +   D+      G + Y++KP   +  +  +   +
Sbjct: 61  GIEVLKTI---GNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|298383908|ref|ZP_06993469.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298263512|gb|EFI06375.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1385

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVED++      + L     Y  L   NG E ++ A +  PD+II D+ +    G 
Sbjct: 1130 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDTAMKEMPDLIICDVMMPVKDGF 1188

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  +++KE+ E   IP I +TA     D     + G + Y+ KP +  I    +   I
Sbjct: 1189 ECCREVKENPETCSIPFIMLTAKVEDDDIIHGLQLGADDYVLKPFTPGILKAKVSSLI 1246


>gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 226

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRSRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE  ++  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|218438991|ref|YP_002377320.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
 gi|218171719|gb|ACK70452.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
          Length = 589

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED     +L  +L+  + Y  ++  NG + +ELA    PD+I+ DI +   +G
Sbjct: 1   MAKILVIEDELSIRELINELLTLAEYEVIEAENGSQGIELALTTLPDLILCDIMMPYKNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +Q++   E + IP I +TA   K D       G + Y++KP S    ++ I   +
Sbjct: 61  YEVLQQLQSYPETESIPFIFLTAKGTKVDFREGMSLGADDYLAKPFSEDDLLQAINTRL 119


>gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
 gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D    + + +   E   ++     +G  AL+ A    PD++++DI +  + 
Sbjct: 1   MNEKLLIVDDERGVVDMLKSYFEMQSFVVYTAYDGETALKQA-ACHPDLVLLDINMPGMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++I+        P++ +TA     D+ +  + G + YI KP  +      +  ++
Sbjct: 60  GLTVCEKIRSHI---SCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|251794279|ref|YP_003009010.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247541905|gb|ACS98923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED+ +  ++ +D +    +       G   LE+  + + D+I++D+ L  + G
Sbjct: 1   MKRILIIEDDPVIAEVQKDYLLAHSFEVDIAERGDSGLEMELRGEYDLILLDLMLPSMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+E      +P++ V+A   + D+ R    G + YI KP  L   +  +K ++ 
Sbjct: 61  YEVCRRIRE---ASNVPILIVSAKKEEIDKIRGFGLGADDYILKPFGLGELVARVKAHLS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi
            ATCC 51908]
 gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1245

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 74/117 (63%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VEDN +N ++  +L++++GY      NG  AL++   +  + ++MDIQ+  + GL 
Sbjct: 1123 RILLVEDNFINQQVATELLKSAGYEVDVADNGQIALDMIADNDYEAVLMDIQMPVMDGLT 1182

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+++++     E+PVIA+TA AM GD E+    G  A+I+KPI L+   +T+  +I
Sbjct: 1183 ATRELRKHYNQSELPVIAMTAHAMSGDREKSLDAGMNAHITKPIVLNELFDTLSYWI 1239



 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K ++V+DN   ++++  +++   +      +G EA+    +   D++++D  + E+ G+ 
Sbjct: 980  KALVVDDNPTALQIYSTIMQDFKFDVDTAASGSEAIYKLGKSSVDLLLLDWMMPEMDGIA 1039

Query: 64   ITKQI-K--EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + +++ +   D  L   P +I +TA+A +  +E   K    A + KP   S   + I
Sbjct: 1040 VIEELDRMVADGRLDSRPIIIMMTAYAAEPLKEDADKSNIYAMLQKPFKASALFDEI 1096


>gi|254254582|ref|ZP_04947899.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124899227|gb|EAY71070.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 246

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E   +     PD+I++D+ L    GL 
Sbjct: 6   HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLDDGAPDLIVLDLMLPGEDGLA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++   + + +PV+ +TA   + D     + G + Y++KP ++   +  I+  +  A
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124


>gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 224

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K   
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 923

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 75/117 (64%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N ++   ++E +G       NG EA+ + ++   D+++MDIQ+ E+ G E
Sbjct: 666 RLLLVEDNPINQQVAEQILEPTGIEISSAPNGAEAVRMVQEAGYDIVLMDIQMPEMDGYE 725

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T  I+ D +++E+P+IA+TA AM+GD+E+    G + YI KPI   + +  I+ ++
Sbjct: 726 ATTIIRNDLKMKELPIIAMTAHAMRGDKEKCIASGMDDYIPKPIDKELMISIIRNHL 782



 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD---VIIMDIQLQEI 59
           K V++V+DN     +    ++  G+      +  EA+++    K D   ++I+D++L  +
Sbjct: 522 KPVLVVDDNFAVRSVLVRYLKQFGFQPTSVASAEEAIKIIEDRKDDQFKLLIIDLKLPGM 581

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           +G E + +I++    +E+P++ +TA  +     + +       ISKP+  +    +I
Sbjct: 582 NGDEASIEIRKTYSKEELPILMITATELNSALSKAQNAQINRMISKPLKQATLFNSI 638


>gi|218247529|ref|YP_002372900.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|257061135|ref|YP_003139023.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
 gi|218168007|gb|ACK66744.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|256591301|gb|ACV02188.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
          Length = 395

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K    +++V+D   N++L   ++   GY   +  NG  AL    Q  PDVI++DI + 
Sbjct: 5   MTKDKGNLLVVDDTPDNLRLLSAMLSEQGYKVRKALNGQIALNTVSQVPPDVILLDINMA 64

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            ++G E+ K +K D E Q+IPVI ++A     D+ +  + G   YI+KP      +  I+
Sbjct: 65  GMNGYEVCKILKSDQETQDIPVIFISALDDVLDKVKAFEVGGVDYITKPFQCEEVIARIE 124

Query: 118 KYI 120
             +
Sbjct: 125 NQL 127


>gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
 gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
          Length = 228

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+++ED++    L    + T G+   +  NG + L LAR    D++++DI L +I+
Sbjct: 1   MQNRVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ +Q++       +PVI +TA   + D     + G + YISKP +    +  +   +
Sbjct: 61  GLDVLRQLR---VSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|83647884|ref|YP_436319.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635927|gb|ABC31894.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 540

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+DN  N+K+  + ++  GY  L   +G +AL + R+  PD+I++D+ +  + G E+
Sbjct: 18  ILLVDDNPANLKILYETLDGRGYKLLVADSGEKALSIVRKSHPDLILLDVMMPGMDGFEV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K+D       +I ++A      +      G   YISKP  +   +  ++ ++
Sbjct: 78  CRTLKQDPATASSSIIFLSALDDTDSKVMGFDAGGVDYISKPFQVKEVIARVETHL 133


>gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +    ++   GY    T NG    ELA  +  D++I+D  L    G+E
Sbjct: 2   KILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSYDLLILDWMLPNKPGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I + ++        PV+ +TA     D       G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQALRSQGNT--TPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALLRRS 119


>gi|94264861|ref|ZP_01288636.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454682|gb|EAT04947.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 391

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
           +V++V+D   N++L  +++   G+       G EAL + R    PD++++D+ + E+ G 
Sbjct: 11  RVLVVDDQPPNIQLLAEVL-ADGHQVFIATGGAEALAICRAPQPPDLVLLDVVMPEMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K D     IPVI VTA     +E      G   YISKP S +I    ++  +
Sbjct: 70  EVCRRLKADEATSAIPVIFVTARDSAEEEVVGFAAGAVDYISKPYSPAIVRARVRTQL 127


>gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 212

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 60/118 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++++D+   + L +D +E  GY  +   NG+E LE  R   PD+II D+ + E+ G 
Sbjct: 5   KRLLLIDDDPNLILLAKDYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + I+ +S    IPVI ++A     D  R    G + Y+ KP      +  ++  +
Sbjct: 65  TFVETIRSNSATDWIPVIFLSARGQTADRVRGLTTGADVYMVKPFEPEELVAQVESSL 122


>gi|59714208|ref|YP_206983.1| two-component hybrid sensor histidine kinase [Vibrio fischeri
           ES114]
 gi|59482456|gb|AAW88095.1| two-component hybrid sensor histidine kinase [Vibrio fischeri
           ES114]
          Length = 766

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN  N  + ++ +  +GY     +NG EA+  A   + D+I MDI + E+ G+  
Sbjct: 501 ILVVEDNHANQIVIKNTLNYAGYSIDIAQNGKEAITKAINTQYDLIFMDISMPEMDGMTA 560

Query: 65  TKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           TK+I+  S+  Q +P+IA+TA A+ GD+ER  + G   Y+SKP + S  +E + KY+
Sbjct: 561 TKKIRSLSDTHQNMPIIALTAHALSGDKERFIEAGMTDYLSKPFNRSDLLECLAKYL 617


>gi|86357266|ref|YP_469158.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|116251495|ref|YP_767333.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|190891315|ref|YP_001977857.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|209548892|ref|YP_002280809.1| response regulator receiver protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|218460522|ref|ZP_03500613.1| response regulator receiver protein [Rhizobium etli Kim 5]
 gi|218663505|ref|ZP_03519435.1| response regulator receiver protein [Rhizobium etli IE4771]
 gi|218673591|ref|ZP_03523260.1| response regulator receiver protein [Rhizobium etli GR56]
 gi|241204116|ref|YP_002975212.1| response regulator receiver protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|4732057|gb|AAD28577.1|AF121341_1 putative response regulator CelR1 [Rhizobium leguminosarum]
 gi|86281368|gb|ABC90431.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|115256143|emb|CAK07224.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|190696594|gb|ACE90679.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|209534648|gb|ACI54583.1| response regulator receiver protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|240858006|gb|ACS55673.1| response regulator receiver protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|327194837|gb|EGE61671.1| two-component response regulator protein [Rhizobium etli CNPAF512]
          Length = 123

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 95/123 (77%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+VMIVEDNELNMKLFRDLIE SGY  +QTRNGMEAL+LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MPKQVMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARKHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED EL  IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|17229375|ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130973|dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1194

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60
            +K++I++D+  N+     L+E+     L   NG + +++ + + PD+  ++MD+ + E+ 
Sbjct: 1074 RKILIIDDDLRNIFAITSLLESYQMQVLFAENGRDGIDILQAN-PDINAVLMDVMMPEMD 1132

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E T+ I++  + + +P+IA+TA AM GD E+  + G   YI+KP+     +  ++ ++
Sbjct: 1133 GYETTRSIRQQKQFRTLPIIALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWL 1192



 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I++D++   ++  D+    G+ A+ + N  + L LA+Q++P+ I +DI + ++ G  + 
Sbjct: 809 LIIDDDDKFARILLDMARQQGFKAIVSLNSKQGLALAQQYQPNAITLDIYMPDMDGWTLL 868

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSIF---METIKKYIG 121
            ++K D + + IPV  ++      D E R  + G   ++ KP+S  I    +  IK +I 
Sbjct: 869 DRLKHDPQTRHIPVHILS----VDDREQRALQLGAITFLQKPVSPEILNHTLTEIKSFID 924

Query: 122 E 122
            
Sbjct: 925 R 925



 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++++ED+ +  +   +LI      ++    G  AL++ R    D I++D+ L ++SGL
Sbjct: 928  KRLLVIEDDPVQAQSIIELIGNGDVQSIAVNTGAAALDILRSQHFDCIVLDLGLPDMSGL 987

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            ++ +QIK++  L ++P+I  T   +   EE   +   E+ I K + S    ++
Sbjct: 988  QLLEQIKQEPSLLKLPIIVYTGKEISRQEETQLRRLAESIIIKNVRSPERLLD 1040


>gi|325859789|ref|ZP_08172919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
 gi|325482715|gb|EGC85718.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R  +    Y   +  +G   LELAR+  PD+++ DI +  + GLE 
Sbjct: 655 VLVIDDNSDIRTYLRSALSPM-YKVSEAVDGKSGLELARRIMPDLVVSDIMMPVMDGLEF 713

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K+D  +  IPVI +TA ++        + G +AYISKP SL + +  I   I
Sbjct: 714 CRQLKQDPAVSHIPVILLTARSLDEQRAEGYEYGADAYISKPFSLRLLLSRIDNLI 769


>gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [uncultured
           actinobacterium HF0770_13M05]
          Length = 224

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 62/116 (53%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED+     L R  +E +G+   ++ +   A+++  + + D++I+D  L  + GL +TK 
Sbjct: 2   VEDDADISSLLRFSLENTGFSVFESPSAEAAMQILTERRTDLVIIDWMLPGMDGLNLTKT 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           ++  ++ Q+IP+I +TA + + D  +    G + YI+KP S    +  +   +  +
Sbjct: 62  LRNRADTQKIPIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRRS 117


>gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 224

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L    +   G+  ++ R+G EAL +      D++++DI +  + G
Sbjct: 1   MPTILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPVDLVVLDIMMPIMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K+++      ++P++ +TA     ++ +  + G + Y++KP         ++  + 
Sbjct: 61  WTLCKELRR--ANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|294809168|ref|ZP_06767884.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|294443562|gb|EFG12313.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1301

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208


>gi|253578241|ref|ZP_04855513.1| regulatory protein VanR [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850559|gb|EES78517.1| regulatory protein VanR [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    +  R L+E  GYI  +  +G + L+       D++I+DI +  IS
Sbjct: 3   MDNHILVVEDDAAIREGVRILLEGEGYIVQEAEDGYQCLKKV-SDDIDLVILDIMMPGIS 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  ++I++   +  +PV+ +TA + + D+      G + Y+ KP S +  +  +K  +
Sbjct: 62  GIKTCEEIRK---ISHVPVLFLTAKSQESDKLLGLMAGGDDYLVKPFSYAELLARVKALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 233

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 62/117 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED++   KL    +E +GY    +  G +AL+   +   D+I++DI L  I G E+ 
Sbjct: 7   LVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLKRSFDLILLDIMLPGIDGFEVC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I++   L+++P+I +TA   + D+    + G + Y+ KP S       I+  +  
Sbjct: 67  RRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123


>gi|304406283|ref|ZP_07387940.1| response regulator receiver protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304344867|gb|EFM10704.1| response regulator receiver protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 121

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 72/120 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VEDNELN  +    +   G+  L   +G E ++LA QH+PD+I+MD+ L  + G
Sbjct: 1   MHTILLVEDNELNRDMLTRRLNRKGFQILTAEDGKEGVDLAIQHRPDLILMDLSLPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+ +K   + ++IPVIA+TA AM GDE    + GC+ + +KP+ L   +  I   +G
Sbjct: 61  WEATRLLKSTDDTKQIPVIALTAHAMAGDEAEAYRAGCDDFDTKPVDLERLLNKINAALG 120


>gi|169634809|ref|YP_001708545.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           SDF]
 gi|169153601|emb|CAP02784.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii]
          Length = 236

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63
           ++IV+D     ++    ++ +G+  LQ  +  +A ++    +P +I++D  L   +SG++
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++K D  L EIPV+ +TA   +  + +    G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRRLKRDENLAEIPVLMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125


>gi|119513685|ref|ZP_01632685.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119461659|gb|EAW42696.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 366

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+  N+ L + +++  GYI     NG +AL    +   D++++D+ +  + G E
Sbjct: 10  KILVVDDSPDNVFLIKTILQGEGYIISTAENGADALVELEKSPCDLVLLDLMMPGMDGYE 69

Query: 64  ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+ D++ Q  IP++ +TA     +  +    G + +I KP++L   +  ++  + 
Sbjct: 70  VTRRIRGDTKFQPYIPILLITAHDAP-NVAKGLDLGADDFIRKPVTLDELLARVRSLLR 127


>gi|120610742|ref|YP_970420.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax citrulli AAC00-1]
 gi|120589206|gb|ABM32646.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax citrulli AAC00-1]
          Length = 395

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
             V++V+D   N+ L   L+    Y+     +G +AL +A+   P D+I++DI +  + G
Sbjct: 38  ATVLVVDDTPDNLALMATLLRDH-YLVKVASHGEKALRIAQSDPPPDLILLDIMMPGLDG 96

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +Q+K     ++IP+I +TA +   DE R    G   YI+KPIS  I +  +  ++
Sbjct: 97  YEVCRQLKAHPASRDIPIIFLTARSTPEDERRGLAAGAVDYITKPISPPILLARVHTHL 155


>gi|29348581|ref|NP_812084.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340486|gb|AAO78278.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1310

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 63/117 (53%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN       +  +E S    +   +G+EAL+L + H PD+I+ D+ +  ++G E
Sbjct: 1058 TILVVDDNPDMTDFLKKTLEESFKRVIIAADGVEALQLIKSHIPDIIVSDVMMPRMNGYE 1117

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   IKED  +  IP+I +TA   K       K G +AY++KP  + + ME I   +
Sbjct: 1118 LCINIKEDITISHIPIILLTARDDKQSLISGYKNGADAYLTKPFEVEMLMEIISNRL 1174


>gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
 gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
          Length = 232

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D     +L R  +       L+  +G+ AL   R   PD++++D+ +  + G + 
Sbjct: 9   VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+E+S    +PVI +TA     D  +  + G + YI+KP         ++  +  +
Sbjct: 68  LQRIREESA---VPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRS 123


>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1202

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VED+ +N ++ R ++   G       +G E + L  +H+ D+++MDIQ+  + G E 
Sbjct: 935  VLLVEDHPINQQVARGMLAGLGCRVEIANDGHEGVRLFARHRYDLVLMDIQMPGMDGYET 994

Query: 65   TKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T  I++          P++A+TA AM+ D +R      + Y+SKPISL      + K++
Sbjct: 995  TDAIRQMERSERWPRTPIVALTANAMEQDRDRCLAADMDDYLSKPISLDRLKAAMSKWL 1053



 Score = 96.0 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
           + ++V+DN  N  L    +   G   L+  +G +ALE            D+ I+D+ +  
Sbjct: 787 RALVVDDNATNRNLLGRYLSNWGVTHLECASGKQALEKIADAAKFGLSFDLAILDLLMPG 846

Query: 59  ISGLEITKQIKEDSELQEIP----VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
           + GL + ++I +  + ++I     V+  +A A     E + + G  A +SKPI  +    
Sbjct: 847 MDGLALAERITQMVQDKQIKPLRMVLLTSAHAR---REELEQAGVVAALSKPIRQAQLRA 903

Query: 115 TIKKYIG 121
            + + + 
Sbjct: 904 LLGQVMR 910


>gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 232

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++++ED+    ++ +D +E  GY    +  G+E L   +    D++++D  L E+ 
Sbjct: 1   MKEKLLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+ +S   ++P++ ++A     D+    + G + YI+KP SL      +  ++
Sbjct: 61  GLTVCQNIRWES---DVPILMMSARKEDADKVEGLQ-GADDYIAKPFSLEELKARVASHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 252

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IVED+     L R  +   GY      +G E +    +   D +++D+ L  I GL
Sbjct: 15  RRVLIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLEEGDWDALVLDLMLPGIDGL 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI K+ +  +     P+I  +A + +       + G + Y++KP S+   +  ++  +  
Sbjct: 75  EICKRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRR 132

Query: 123 A 123
           +
Sbjct: 133 S 133


>gi|114707397|ref|ZP_01440294.1| Response regulator receiver [Fulvimarina pelagi HTCC2506]
 gi|114537278|gb|EAU40405.1| Response regulator receiver [Fulvimarina pelagi HTCC2506]
          Length = 123

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 87/122 (71%), Positives = 107/122 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K VMIVEDNELNMKLFRDLIE  GY  ++T +G+ A++LAR+H+PD+I+MDIQL EIS
Sbjct: 1   MAKTVMIVEDNELNMKLFRDLIEAYGYETIRTSSGLNAVDLARKHRPDLILMDIQLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+Q+K D ELQ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETI+ ++
Sbjct: 61  GLDVTRQLKADPELQRIPVIAVTAFAMKGDEERIREGGCEAYISKPISVPKFIETIRSFL 120

Query: 121 GE 122
           GE
Sbjct: 121 GE 122


>gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 916

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           +V++V+D+  N+      +E      L   NG EA E+  Q    D+++MDI + E+ G 
Sbjct: 794 RVLVVDDDMRNVFAITAALEEQEIEVLFAGNGREAQEILMQTPGIDLVLMDIMMPEMDGY 853

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  + I++  E ++IP+IA+TA AMKGD ++  + G   YISKP+ ++  +  ++ ++
Sbjct: 854 EAMQSIRKMPEYEKIPIIALTAKAMKGDRDKCLQAGASDYISKPLDINQLLSLMRVWL 911


>gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 234

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D +  + L    +   G++  +  +G  AL LAR  KPD++++D+ L  + G+
Sbjct: 4   ATILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +Q+  D+    + V+ +TA A + D+      G + Y++KP S    +  +K  +  
Sbjct: 64  EVCRQLHRDT---SVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120


>gi|297568710|ref|YP_003690054.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924625|gb|ADH85435.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfurivibrio alkaliphilus AHT2]
          Length = 530

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N ++    +   GY+ ++  NG +AL +      D++++DI + E+ G E+
Sbjct: 171 ILVVDDITANREVLSRRLRRLGYLVMEAENGRQALAMLETGAFDLVLLDILMPELDGYEV 230

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++IK +  ++ +PV+ ++A        R  + G + Y++KP +  +    +   +
Sbjct: 231 LRRIKANELIRHVPVLMISAVGDINSVVRCLEAGADDYLAKPFNSVLLRARVNASL 286


>gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
 gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
          Length = 223

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     ++    ++ + Y      +G EAL+       D+II DI +  + G E
Sbjct: 2   KILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K+++E       PVI +TA     D+      G + YI KP         I+  +  
Sbjct: 62  FIKRLRESKN--NTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRR 118


>gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED     +     +   G+      +G E LELA     D+I++D+ L  ++
Sbjct: 1   MNGRILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVMLPSLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+     +  P+I +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GMEVCRRIRA---AKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|187919315|ref|YP_001888346.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717753|gb|ACD18976.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 246

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L    +E +G       NG +      Q  PD+I++D+ +    GL 
Sbjct: 6   HVLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   + + +PV+ +TA   + D     + G + Y+ KP ++   +  I+  +  A
Sbjct: 66  LCRELRA-GKFRAVPVLMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRRA 124


>gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
 gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
          Length = 229

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+I++D     +L    +  SG     +  G EAL  AR+  PD++++D+ L ++SG
Sbjct: 1   MPHVLIIDDERDLAELIDFNLRGSGLTTHVSHTGEEALVAAREQNPDLVLLDLMLPDMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ +Q++   + + + ++ +TA   + D  R  + G + Y+ KP S+   +  +K  + 
Sbjct: 61  IDVCRQLRASPQSRGVLIVMLTAKGEESDRIRGFEVGADDYVVKPFSVRELVLRLKAILR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 222

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D+    ++ R  +   GY   +  +G+    LA     D++++D+ L E+ G
Sbjct: 1   MAKILIVDDDPAIREILRAYLSHEGYELSEAADGVS--ALALAPAADLVVLDLMLPEMDG 58

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + ++ D    E+P++ +TA   + +  R  + G + Y++KP S    +  ++  + 
Sbjct: 59  LEVARHLRRD--FPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|291532478|emb|CBL05591.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 194

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED     +  +  +E  G+      NG+ A E   Q   D++++DI L ++ G
Sbjct: 1   MSKILIVEDEHRIARFLQMELEHEGFSTASESNGLRAYERIIQEDYDLVLLDIMLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I + +++   L +IP+I +TA     D+      G + YI+KP ++   +  I+  + 
Sbjct: 61  LTICQNVRK---LSDIPIIMLTAKDEINDKVTGLDIGADDYITKPFAIQELLARIRATLR 117

Query: 122 E 122
           +
Sbjct: 118 K 118


>gi|116249380|ref|YP_765221.1| two-component histidine kinase/response regulator motif-containing
            protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254030|emb|CAK12427.1| putative repetitive protein with two-component sensor and regulator
            motifs [Rhizobium leguminosarum bv. viciae 3841]
          Length = 2099

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V++V+D+  N+     ++E  G   L    G EA+++        +++MDI +  + G 
Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + I+ +   + +P++A+TA AMKGD E+  + G   Y++KP++    +  ++ ++  
Sbjct: 2040 ETMQVIRSEPRFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099



 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED+    ++  DL   +G+  L    G +AL LA+ ++P  I +DI L ++ G  + 
Sbjct: 1714 LVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALALAQDYRPAAISLDIFLPDMLGWTVL 1773

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
             Q+K++ + + IPV  ++   +  D +     G  A++SKP +       +  +K Y
Sbjct: 1774 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAY 1827



 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++VEDNE        L+           +G EAL   RQ+  D +++D+ L ++SG 
Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALAALRQNSADCVVLDLSLPDMSGF 1892

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            ++ +Q+++D+E+ E+PV+  T   +  +E+        + + K + S    ++
Sbjct: 1893 DVLEQMRDDAEIGEVPVVVFTGRELSAEEDAALHSMARSVVVKGVESPERLLD 1945


>gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 226

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED E    + +  +E   +  + T NG +A+   ++   D+II+D+ L EI G +
Sbjct: 2   RILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQHFDLIILDVMLPEIDGFQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +QI+      E+PVI +TA    GD     K G + Y++KP  L   +  I   I  
Sbjct: 62  ICEQIRLTDM--EVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKR 118


>gi|320162523|ref|YP_004175748.1| putative response regulator [Anaerolinea thermophila UNI-1]
 gi|319996377|dbj|BAJ65148.1| putative response regulator [Anaerolinea thermophila UNI-1]
          Length = 325

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+   +++ RD++  +GY  +   NG EAL+  RQ  PD+I+ DI +  + G +
Sbjct: 9   RILLVEDDGSLLEVVRDILSDAGYHVITAANGEEALQAFRQAHPDLILSDIMMPVMDGFQ 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +++      +P I ++A   + D    R+ G + Y+ KP S    +  ++  +  
Sbjct: 69  LLEAVRQMEAGMLVPFIFLSARTERYDTSNARRLGADDYLFKPFSADELLTAVEARLRR 127


>gi|291569601|dbj|BAI91873.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 379

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 57/116 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++    +    Y      NG  AL       PD++++DI++ E+ G ++
Sbjct: 11  ILIVDDTPDNLRVLSATLGDRDYDVQCAINGQLALMAVANQPPDLVLLDIKMPEMDGYQV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K   +  +IPVI ++A     D+ +    G   YI+KP  +   +  ++  +
Sbjct: 71  CEALKSQQKTADIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQL 126


>gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQE 58
           M K K+++ +D     KL RD +    Y  ++  NG +AL++     +  +II+D+ + +
Sbjct: 1   MSKNKILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDMFYMDSEISLIILDVMMPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G  + K+I+E      IPV+ +TA   + D     + G + YI+KP S  I M  +  
Sbjct: 61  VDGFAVLKEIRE---TSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNA 117

Query: 119 YIGEA 123
            +  +
Sbjct: 118 VLRRS 122


>gi|284035957|ref|YP_003385887.1| response regulator receiver protein [Spirosoma linguale DSM 74]
 gi|283815250|gb|ADB37088.1| response regulator receiver protein [Spirosoma linguale DSM 74]
          Length = 247

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++++ED     +   +L+  SGY      +G++ + LA++  PD+I+ DI + ++ 
Sbjct: 1   MSIRILVIEDVTQIRENIAELLTMSGYEVQMAADGVKGITLAQKWSPDLILSDIMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K ++    L  +P + +TA +   D       G + Y++KP   S  ++ I+  +
Sbjct: 61  GHQVLKSVRASPTLAHVPFVFLTAKSDMLDLRYSMNLGADDYLTKPFRSSELLKAIESRL 120

Query: 121 GE 122
             
Sbjct: 121 AR 122


>gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 223

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|148558726|ref|YP_001257449.1| putative transcriptional regulatory protein OmpR [Brucella ovis
           ATCC 25840]
 gi|148370011|gb|ABQ62883.1| putative transcriptional regulatory protein OmpR [Brucella ovis
           ATCC 25840]
          Length = 238

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D++    L  + ++  G       NG E L++  +   D++I+D+ L   SG+
Sbjct: 5   AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + ++       +P+I +TA A   D+    + G + YI+KP      +  I+  +  
Sbjct: 65  EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121


>gi|126652243|ref|ZP_01724422.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905]
 gi|126590975|gb|EAZ85087.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905]
          Length = 234

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+     L +  + T  Y     ++G  AL+ A   KPDV I+D+ L +I 
Sbjct: 1   MNKRILVVEDDVAIANLIKMTLATQQYEFDIAQDGNRALQKAITMKPDVYILDLGLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  +I+      + P+I V+A   + D+      G + Y++KP S+   +  I+  +
Sbjct: 61  GVELITKIRS---WTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVAL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++I +D+     L +  ++   Y  +  +NG+EAL+   + K DV+I+D+ +  + G 
Sbjct: 19  RRILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFDESKFDVVILDVMMPYVDGF 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++I+E S   ++P+I +TA     D     + G + YI+KP   +  +  +   +  
Sbjct: 79  EACQRIRERS---DVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRR 135


>gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 234

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED +   ++  + +   G+      +G++AL L + H  D++++DI +  + G
Sbjct: 13  MANILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDALMLLKNHPMDLMVLDIMMPHLDG 72

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K  +E S L   P+I +TA + + D+ +  + G + Y++KP S  + +      + 
Sbjct: 73  FSVCKMAREMSSL---PIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLR 129

Query: 122 EA 123
            +
Sbjct: 130 RS 131


>gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D     +L        GY  ++  +GM+A+E+ +    D+I+MDI + E+ G
Sbjct: 1   MPRILIVDDEPKIAELINKYATFEGYDTVEVNDGMKAIEICKVEDFDIIVMDIMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++I++    ++ PVI ++A   + D     + G + Y+ KP S    M  ++  + 
Sbjct: 61  FSAVREIRK---TKDTPVIMLSARGEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+ + ++      E +G+      +G+  LE+ RQ +PD+II+D+ L  I G
Sbjct: 1   MTTILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMVRQVRPDLIILDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + + +++    IP++ +TA   +       + G   Y+ KP S+   +  ++  + 
Sbjct: 61  FSVCRAVAKETA---IPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR 117


>gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 234

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +M+V+D +   +L    ++  GY  LQ  NG E LEL ++++  +I++DI + +I
Sbjct: 1   MSKETIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+ +  +++E   + E+P+I ++A     D+      G + Y++KP +    +  IK  
Sbjct: 61  DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|117926657|ref|YP_867274.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610413|gb|ABK45868.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 241

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED+E    +  D +   G+      +G            DVI+MD+ L    GL 
Sbjct: 6   RILIVEDDEPTRTMVADYLRGHGFEVRTLASGETMNSTLAAWPADVIVMDLMLPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K++  D +  +IP+I +TA   + D     + G + Y+SKP S    +  ++  +  A
Sbjct: 66  LCKRLSVDKQTADIPIIMLTARGEETDRIVGLEMGADDYLSKPFSTRELLARLRSVLRRA 125


>gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 226

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254410456|ref|ZP_05024235.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182662|gb|EDX77647.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 2020

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED  +N K+ R +++  GY A    NG EALE  R+    V+ MD+Q+ E+ GLE 
Sbjct: 1756 ILLVEDVAVNQKVARQMLQRLGYRADVANNGQEALESLRRKSYQVVFMDVQMPEMDGLEA 1815

Query: 65   TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I+ +      P +IA+TA AM+GD E+  + G   YISKPI     ++ +  Y
Sbjct: 1816 TRRIRAEWSSACQPWIIAMTAHAMQGDREQCLQVGMNDYISKPIRPEALVQALTTY 1871



 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 11/126 (8%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
            K++++V+DN  N ++     ++ G       +G +AL  LA     D+ ++D Q+ E+ G
Sbjct: 1609 KRLLVVDDNATNRQIITLQAQSWGMEVTTAASGEQALNWLADSEPFDLAVLDWQMPEMDG 1668

Query: 62   LEITKQIKEDSELQEIPVIAVTAFA-----MKGDEERIRKGGCEAYISKPISLSIFMETI 116
            L +  QI+     +++P++ +++          D          A+++KPI  S      
Sbjct: 1669 LTLALQIQALPNNEQLPLVMLSSVGRQTPYQPDDMPN-----FAAFLTKPIKQSQLYNIF 1723

Query: 117  KKYIGE 122
               +G 
Sbjct: 1724 VTILGR 1729


>gi|153869707|ref|ZP_01999246.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
            PS]
 gi|152073825|gb|EDN70752.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
            PS]
          Length = 1183

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYI--ALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59
            KKV+IV+D+  N       +E  G         NG EAL +  +H   D+++MDI + E+
Sbjct: 1061 KKVLIVDDDIRNTFALMTYLEGEGMEMEIFIGENGKEALTMLDEHPDIDIVLMDIMMPEM 1120

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             G E  + I++ +  Q++P+IA+TA AMKGD+ +  + G   Y+SKP+     +  ++ +
Sbjct: 1121 DGYEAIRAIRKQTRFQKLPIIALTAKAMKGDKTKCIEAGANDYLSKPVDTEKLISLMRVW 1180

Query: 120  I 120
            +
Sbjct: 1181 L 1181



 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 6/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +L  +     G+  L   +G   L+LA+Q+KP  II+D+ L ++ G  +
Sbjct: 795 ILLIEDDYKFSRLLMEFARDRGFKCLIAGDGKTGLQLAQQYKPHAIILDVGLPQMDGWTV 854

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKYIG 121
            +++K++ E + IPV  ++A     D    +K G   Y+ KP+ +    E    I++++ 
Sbjct: 855 MEKLKDNPETRHIPVHFLSASESNLD---AKKMGAIGYLLKPVGMGEINEAFKNIEQFLS 911

Query: 122 E 122
           +
Sbjct: 912 K 912



 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IV DN+   +    LI          +              D II+D+ +++ +G 
Sbjct: 915  KNLLIVVDNQERQQEIEALIGNEEVQLKVAKTQDNVRSYLHTGAFDCIIIDVDVEQGTGT 974

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS-KPI-SLSIFME 114
            +  +Q++ +  + EIPVI  T   +   EE++ +  C+A+++ K + S    ++
Sbjct: 975  QFLEQLQVEETVSEIPVILYTGRDLTPQEEKVLQT-CQAHLTVKAVNSPERLLD 1027


>gi|330836392|ref|YP_004411033.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748295|gb|AEC01651.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 251

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED     +L    ++  GY  LQ  +G +ALE  +   P+++++D+ L E+SGLE+
Sbjct: 18  VLIVEDETDIQELISYHLKQEGYSVLQALDGRQALEQIKVGTPNLVLLDLMLPELSGLEV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K I+    +  +PV+  +A   + D     + G + YI+KP S  + +  +K  +  
Sbjct: 78  LKTIRYSWGMTALPVLIASARTEESDIIMGLEIGADDYITKPFSPKVLIARVKAILRR 135


>gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 246

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L    +   G+      +G  A+  AR+ +PD I++D+ L ++ G E
Sbjct: 21  RVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVMLPDVDGFE 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++      E+PV+ +TA     D       G + Y++KP SL   +  ++  +  A
Sbjct: 81  VLRRVRA--GTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRA 138


>gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 246

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  GY      +  +  +   +   +++++D+ L    GL 
Sbjct: 13  RILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQMDKALSRELYNLMVLDLMLPGEDGLS 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++E      IP+I +TA     D       G + Y+ KP +    M  IK  +  
Sbjct: 73  ICRRLRE--ATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRR 129


>gi|293368763|ref|ZP_06615367.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292636068|gb|EFF54556.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1343

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQASSLQPQMIVSDIMMPVMSGLE 1150

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1151 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1207


>gi|253572680|ref|ZP_04850081.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251837812|gb|EES65902.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1321

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 64/116 (55%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN       +  +       L   +G+EAL+L + H PD+I+ D+ +  ++G E+
Sbjct: 1063 ILVVDDNPDLTDFLKKALGEYFKRILTASDGVEALQLIKSHTPDIIVSDVMMPRMNGYEL 1122

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IKED  +  IPVI +TA   K  +    K G +AY++KP  + + ME I+  +
Sbjct: 1123 CKNIKEDIAISHIPVILLTARDDKQSQMSGYKNGADAYLTKPFEVEMLMELIRNRL 1178


>gi|153010998|ref|YP_001372212.1| response regulator PleD [Ochrobactrum anthropi ATCC 49188]
 gi|151562886|gb|ABS16383.1| response regulator receiver modulated diguanylate cyclase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 461

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 67/121 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+EL    + DV+++DI + E+ 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVITAYSGPEAIELCLGGQIDVVLLDILMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K+D     IPV+ VT+     D+ R  + G + ++SKP+S    +  +K   
Sbjct: 61  GFEVCRRLKDDPRTSNIPVVMVTSLDGVDDKIRGLEAGADDFLSKPVSDLQLLSRVKSLA 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IV+++EL     R ++  + Y      +   AL  A     D I++         L
Sbjct: 160 ARILIVDEDELAAARLRLILGET-YRVDVASDANTALIRAIDTDYDSIVVSANFTYYDPL 218

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  Q++     + +P+I V          R  + G   Y+ +P+        ++  I  
Sbjct: 219 RLCSQLRTIERTRLVPIILVVREDEGALVVRALELGVNDYLMRPLEKLELFARLRTQIKR 278


>gi|29347045|ref|NP_810548.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338943|gb|AAO76742.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1321

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 64/116 (55%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN       +  +       L   +G+EAL+L + H PD+I+ D+ +  ++G E+
Sbjct: 1063 ILVVDDNPDLTDFLKKALGEYFKRILTASDGVEALQLIKSHTPDIIVSDVMMPRMNGYEL 1122

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IKED  +  IPVI +TA   K  +    K G +AY++KP  + + ME I+  +
Sbjct: 1123 CKNIKEDIAISHIPVILLTARDDKQSQMSGYKNGADAYLTKPFEVEMLMELIRNRL 1178


>gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++++ED     +     ++  G+      +G E LELA   + D+I++D+ L  ++
Sbjct: 1   MNGRILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPRLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+     +  P+I +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GMEVCRRIRA---AKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 229

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + G
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 61  FQVCKTIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 247

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D++    L +  ++     A     G E L+  R+ +  ++++D+ +  + G
Sbjct: 18  MNKILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I+++     +P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 78  FETLEEIRKE---YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 134

Query: 122 E 122
            
Sbjct: 135 R 135


>gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1792

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G
Sbjct: 1671 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1730

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++ 
Sbjct: 1731 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1790

Query: 122  E 122
            E
Sbjct: 1791 E 1791


>gi|241113448|ref|YP_002973283.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240861656|gb|ACS59322.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 2099

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V++V+D+  N+     ++E  G   L    G EA+++        +++MDI +  + G 
Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + I+ +   + +P++A+TA AMKGD E+  + G   Y++KP++    +  ++ ++  
Sbjct: 2040 ETMQVIRSEPRFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099



 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED+    ++  DL   +G+  L    G +AL LA+ ++P  I +DI L ++ G  + 
Sbjct: 1714 LVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALALAQDYRPAAISLDIFLPDMLGWTVL 1773

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
             Q+K++ + + IPV  ++   +  D +     G  A++SKP +       +  +K Y
Sbjct: 1774 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAY 1827



 Score = 98.7 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++VEDNE        L+           +G EAL+  RQ+  D +++D+ L ++SG 
Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALDALRQNAADCVVLDLSLPDMSGF 1892

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            ++ +QI++D+E++E+PV+  T   +  +E+        + + K + S    ++
Sbjct: 1893 DVLEQIRDDAEIREVPVVVFTGRELSAEEDAALHSMARSVVVKGVESPERLLD 1945


>gi|225568924|ref|ZP_03777949.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM
           15053]
 gi|225162423|gb|EEG75042.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM
           15053]
          Length = 217

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED      L ++ +  +GY+     +G++A ++  Q + D++++DI L EI+G
Sbjct: 1   MNKILIVEDEVPISNLIKESLSDAGYLCFCAFDGIQAADMVEQKRYDLVLLDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+       IPVI +TA +   D+ +  K G E YI+KP  ++  +  ++  + 
Sbjct: 61  YELLEYIRPLG----IPVIFLTARSDVRDKVKGLKSGAEDYITKPFEIAELLARVETVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016]
 gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 242

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    L    ++  G+   ++ NG +A       + ++ I+D+ L +I 
Sbjct: 11  MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+E+      PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 71  GFTLCQRIRENHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQL 127

Query: 121 GE 122
             
Sbjct: 128 RR 129


>gi|209964835|ref|YP_002297750.1| cell division response regulator protein DivK [Rhodospirillum
           centenum SW]
 gi|209958301|gb|ACI98937.1| cell division response regulator protein DivK [Rhodospirillum
           centenum SW]
          Length = 143

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 79/117 (67%), Positives = 105/117 (89%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDNELNMKLF DL+E  GY  LQT++GMEAL LARQH+PD+I+MDIQL E+SGLE+
Sbjct: 27  VLVVEDNELNMKLFHDLLEAHGYATLQTKDGMEALRLARQHRPDLILMDIQLPEVSGLEV 86

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           TK +KED +L+ IPV+AVTAFAMKGDEE+IR+GGCE YI+KPIS++ F++T+++++G
Sbjct: 87  TKWLKEDDDLRGIPVVAVTAFAMKGDEEKIREGGCEDYIAKPISVARFIQTVQRFLG 143


>gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D +    L    +++ GY  LQ  +G+EA+++      D++I+D+ +  ++G+E 
Sbjct: 6   ILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIENTDVDIVILDVMMPNLNGIET 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+E    +E+P+I ++A +   D+      G + Y+SKP +    +  +K  +  
Sbjct: 66  CLKIREM---KEMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRR 120


>gi|120402928|ref|YP_952757.1| multi-sensor signal transduction histidine kinase [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955746|gb|ABM12751.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 1385

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 58/117 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +V++ +DN    +    L+ + GY      +G+EALE  R   PD+++ D+ +  + G
Sbjct: 626 SARVLVADDNADMREYLTRLLRSDGYRVDAVADGLEALEAIRAGAPDIVVSDVMMPRLDG 685

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           L +  +++ D      PV+ ++A A + +     + G + Y+ KP + +  +  ++ 
Sbjct: 686 LGLVAELRADRRTAATPVLLLSARAGQQESISGLRAGADDYLVKPFAAAELLARVRT 742


>gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+I +D E  ++L    +E  G+      NG+EAL++   ++ D+ I+DI + +I G
Sbjct: 1   MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E+    ++PVI ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 61  YHLVRKIREN---YDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 229

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E   K     ++  GY A    +G   L+LA ++  DVI++D+ L E++G
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E   +++ P+I +TA     D       G + Y+ KP ++   +  I+  + 
Sbjct: 61  LEVARRLRE---VKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|260172959|ref|ZP_05759371.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
 gi|315921239|ref|ZP_07917479.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313695114|gb|EFS31949.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1372

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  +   NG E  + A    PD+++ DI +  + G+ + 
Sbjct: 1114 LIVEDNEEIQKYIVESFTDS-FEVITANNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            KQ+K+D     IP+I +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1173 KQLKDDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227


>gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 224

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  IK   
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|170744709|ref|YP_001773364.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
 gi|168198983|gb|ACA20930.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium sp. 4-46]
          Length = 457

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D   N+KL    +    +  +   NG +A+ +  Q   D++++D+ +  + 
Sbjct: 1   MSARVLIVDDLFPNLKLLETKLSLEYFDVISAMNGPDAIAICEQGLCDIVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K       +PV+ VTA     D  R    G + +++KPI  +  +  ++  +
Sbjct: 61  GFEVCRRLKTTPTTAHLPVVMVTALDQPSDRLRGLDAGADDFLTKPIDDTALLARVRSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 73.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I +D   + +     +  S +      +   ALE A +   DV ++ +      GL
Sbjct: 156 AHLLIADDRRASAERMAAALSQS-HCVEVVADPHRALETATEGNFDVALVSLDFDGFDGL 214

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEE---RIRKGGCEAYISKPISLSIF 112
            +  Q++     + + V+ +   A  GD     R    G   Y+ +PI  +  
Sbjct: 215 RLCSQLRSLDRTRGMQVVML---ADAGDRARIMRGLDLGVHDYLVRPIDRNEL 264


>gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR,
           regulation of Pi uptake (OmpR family) [Frankia alni
           ACN14a]
          Length = 226

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E        ++E  G+      +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTRLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + ++  S    +P+I +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRTLRTRS---SVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 254

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQIYEAIDGLDALQKMNEVKVDMVILDIMMPNMDGFDV 93

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     EIP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 94  CFELRK---YYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148


>gi|295093812|emb|CBK82903.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 229

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I +D +  +      ++T+GY   +  NGMEA+++   +   +++MD+ + ++ G
Sbjct: 1   MYNILICDDEKDIVSAIEIYLKTAGYSVYKAYNGMEAVDMVNSNDIQLVLMDVMMPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +    +I+E S    +PVI +TA +   D+    + G + Y++KP +    +  +K  + 
Sbjct: 61  ITAMAKIRESS---NVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|239833977|ref|ZP_04682305.1| response regulator receiver protein [Ochrobactrum intermedium LMG
           3301]
 gi|239822040|gb|EEQ93609.1| response regulator receiver protein [Ochrobactrum intermedium LMG
           3301]
          Length = 123

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 93/123 (75%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K VMIVEDNELNMKLFRDLIE SGY  ++TRNG+EAL+LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MPKSVMIVEDNELNMKLFRDLIEASGYETIRTRNGLEALDLAREHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKDDDELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYM 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D    + L +  IE +G+  +   +G    ELA   KPD+I++D+ L E+ G+E+T
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K++++D     +P++ +TA   + D+    + G + Y++KP S    +  IK  +  
Sbjct: 62  KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116


>gi|262375130|ref|ZP_06068364.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262310143|gb|EEY91272.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 254

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +  +   L ++    +I++D  L    GL 
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +   + P+I +TA     D     + G + Y+ KP + +  +  I+  +  
Sbjct: 82  ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138


>gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED+    +L RD ++ +GY      +G   L+ A     D++I+D+ L ++ G
Sbjct: 1   MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLMLPQLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K++++  E   IP+I ++A +   D+ R    G + Y++KP S +  M  I+ ++ 
Sbjct: 61  FEIIKEVRKKLE---IPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254411499|ref|ZP_05025276.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182000|gb|EDX76987.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 524

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 59/116 (50%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IV+DN  N++    ++   GY   +  +G  ALE  R H PD+I +DI++ ++ G  + 
Sbjct: 9   LIVDDNIDNLRSLAAILRLEGYKVRKAISGQVALETVRSHPPDLIFLDIKMPQMDGYTVC 68

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +K+D+    IP+I ++A     D+ +    G   YI+KP      +  ++  + 
Sbjct: 69  SILKQDTTTGSIPIIFLSALNETADKLKAFAVGGVDYITKPFQAPEVVARVENQLR 124


>gi|163815559|ref|ZP_02206932.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
 gi|158449196|gb|EDP26191.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I +D +  +      ++T+GY   +  NG EA+++       +++MD+ + ++ G
Sbjct: 1   MYNILICDDEKDIVSAIEIYLKTAGYSVYKAYNGKEAVDMVNAKDIQLVLMDVMMPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +    +I+E+S    +PVI +TA +   D+    + G + Y++KP +    +  +K  + 
Sbjct: 61  ITAMAKIRENS---NVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|194365077|ref|YP_002027687.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347881|gb|ACF51004.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 242

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+     L  + +  +GY      +G    +L  +   D+I++D+ L    G
Sbjct: 7   MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDG 66

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++  S     PVI +TA A   D     + G + Y++KP      +  I+  + 
Sbjct: 67  LTLCRDLRARS---NTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLR 123

Query: 122 E 122
            
Sbjct: 124 R 124


>gi|117621451|ref|YP_858400.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562858|gb|ABK39806.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 240

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++V+D+     L +  +E  G      R+G E   L  + + D++++D+ +    G
Sbjct: 5   STHILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + ++++  S L   P+I +TA   + D     + G + Y++KP +    +  IK  + 
Sbjct: 65  LTLCRELRAKSSL---PIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|91789740|ref|YP_550692.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
           JS666]
 gi|91698965|gb|ABE45794.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
           JS666]
          Length = 1003

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ +DN         L+    Y      +G EAL   +Q KPD+++ D+ +  + GL
Sbjct: 642 ARVLVADDNRDLRTFLSSLLAPH-YDVQVVADGREALAAIQQRKPDLVLSDVMMPNLDGL 700

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + ++ED E + +PVI ++A A +         G + Y++KP +    +  ++ ++
Sbjct: 701 GLVRALREDPETRTLPVILLSARAGQEASLEGLSAGADDYLAKPFTSQELLARVRTHL 758


>gi|332141805|ref|YP_004427543.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551827|gb|AEA98545.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1351

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 7/124 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQEI 59
            +V++VEDN +N  +   ++E  G       NG EAL   +Q        +++MD Q+ E+
Sbjct: 1227 RVLLVEDNAINQLVATTILEGEGLTVDVANNGKEALAFLQQPQQAKPYSLVVMDCQMPEM 1286

Query: 60   SGLEITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             G E TK I+  +       IP++A+TA AM+ D+++  + G   +++KPI     + T+
Sbjct: 1287 DGFETTKHIRSGAAGAHYQSIPIVAITANAMQSDKDKCLQSGMNDFLTKPIDQEKVILTL 1346

Query: 117  KKYI 120
            +K++
Sbjct: 1347 QKWL 1350



 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQEIS 60
            +IV+ N  N ++ +  +   G       +   AL   +          ++I+D ++ ++ 
Sbjct: 1075 LIVDSNVSNREVLKRQLNVWGVETSVADSSKGALAHCKASLKSSSPITLVIIDNKMPDMC 1134

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G +    + E+    +I ++ +T        +  R  G  +   KP++       + K 
Sbjct: 1135 GKDFAMALFEEPRFADIRIVVMTELQDIESAQHFRTRGIASIFPKPLTTENLRHILAKV 1193


>gi|297565290|ref|YP_003684262.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849739|gb|ADH62754.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 223

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+++VED        R  +  +G+  L+     EA E   Q   D++++D  L +  
Sbjct: 1   MMPKLLVVEDEPAVRMGLRLSLSRAGHQVLEAATATEAWEQLPQA--DLVVLDWMLPDEP 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + ++++ D   + +PV+ +TA A +GD       G + Y++KP S    +  I+  +
Sbjct: 59  GVRLLERLRRDGRYENLPVLMLTARAGEGDRVEGLTRGADDYLTKPFSTPELLARIQALL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|294505928|ref|YP_003569986.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one co [Salinibacter ruber M8]
 gi|294342256|emb|CBH23034.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one co [Salinibacter ruber M8]
          Length = 1392

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++VEDN       R+ +    +      +G E     +   PD+++ D+ +  ++G 
Sbjct: 1142 ATVLVVEDNAGMRAYLREQLSGR-WTVRTAADGEEGWAAVQDEAPDLVLSDVMMPTVNGT 1200

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +QIK    L+  PV+ +TA A    E    K G + Y++KP       + I  ++
Sbjct: 1201 ELCEQIKSAEALRHTPVLLLTARAGTDAEVEGLKTGADDYVTKPFDAEELRQRIANHL 1258


>gi|282859444|ref|ZP_06268549.1| response regulator receiver domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282587672|gb|EFB92872.1| response regulator receiver domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 230

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 70/120 (58%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D +   ++ +  +E  GYI     +G EAL +    K +++++D+ ++EISG  
Sbjct: 7   KILVVDDEKDLCEILKFNLEAEGYIVDTANSGEEALTM-DISKYNLLMLDVMMEEISGFA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K++K+D E ++IP+I +TA   + D     K G + YISKP S+   +  IK  +  +
Sbjct: 66  LAKKLKDDIETKDIPIIFLTARTTENDIITGLKLGADDYISKPFSIREVILRIKVVLRRS 125


>gi|254695542|ref|ZP_05157370.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 3
           str. Tulya]
 gi|261215933|ref|ZP_05930214.1| two-component system response regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917540|gb|EEX84401.1| two-component system response regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 238

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K    ++IV+D++    L  + ++  G       NG E L++  +   D++I+D+ L  
Sbjct: 1   MKEDTHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SG+EI + ++       +P+I +TA A   D+    + G + YI+KP      +  I+ 
Sbjct: 61  KSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 VLRR 121


>gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
 gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
          Length = 237

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     K+  + +   G+      +G  A+   R+ +P +I++D+ L    GLE
Sbjct: 13  RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGLE 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  V+ ++A   + D+      G + Y+ KP      +  +K  +  
Sbjct: 73  VCRRIR---TFSDAYVLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128


>gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 232

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++++ED           ++ +G+  L+   G  AL++  +H  DV ++D+ L  + 
Sbjct: 3   MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTVDVALLDVMLPGMD 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  +
Sbjct: 63  GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   + IV+D+    ++    ++  GY+     +  EA+ L +++ PD+ ++DI L  +
Sbjct: 1   MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G E  ++I+      E P+I V+A   + D+    + G + Y++KP S    +  + + 
Sbjct: 61  NGYEFCRRIRA---GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRA 117

Query: 120 IGE 122
           +  
Sbjct: 118 LQR 120


>gi|242280723|ref|YP_002992852.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio salexigens DSM 2638]
 gi|242123617|gb|ACS81313.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio salexigens DSM 2638]
          Length = 335

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 71/120 (59%), Gaps = 1/120 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+KK++ V+D   N+++ R ++    Y  +   NG  AL+ A +H PD++++DI + +IS
Sbjct: 1   MMKKILCVDDEPNNLQVLRQIL-KEHYQLIFAPNGTRALDAAAKHMPDMVLLDIMMPDIS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D   ++I +I VTA +   DE      G   YI KP+S ++ +  ++ ++
Sbjct: 60  GYEVCEKLKADPRTKDITIIFVTAMSEVKDEAYGFDVGAVDYIQKPVSGAVVLRRVQTHL 119


>gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 241

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED+          +   GY  L   +G   L LAR    D+II+D+ L  ++G 
Sbjct: 17  RTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGF 76

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++  +E + +PVI ++A   + D+    + G E YI+KP SL+  +  +K  +  
Sbjct: 77  ELLRILR--NERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRR 134


>gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L]
 gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L]
 gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 233

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +I+E+   +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKIREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|73668584|ref|YP_304599.1| response regulator receiver [Methanosarcina barkeri str. Fusaro]
 gi|72395746|gb|AAZ70019.1| response regulator receiver [Methanosarcina barkeri str. Fusaro]
          Length = 125

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/122 (46%), Positives = 84/122 (68%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+KK++IVEDN +NM+L  DL+E  G+   +  +G++ALE   + K D+I++D+QL ++ 
Sbjct: 1   MMKKILIVEDNPMNMELILDLLEFYGHNITKAEDGIKALESLAETKFDIILLDMQLPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+  +IK++    +IPVIAVTA AMKG EE   + GC  Y+SKPI +  F   I KY+
Sbjct: 61  GLEVLDRIKKNPATADIPVIAVTAHAMKGSEEHFIEMGCVDYVSKPIDIHKFRALIDKYL 120

Query: 121 GE 122
           GE
Sbjct: 121 GE 122


>gi|29349644|ref|NP_813147.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341554|gb|AAO79341.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1385

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVED++      + L     Y  L   NG E ++ A +  PD+II D+ +    G 
Sbjct: 1130 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDTAMKEMPDLIICDVMMPVKDGF 1188

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  +++KE+ E   IP I +TA     D     + G + Y+ KP +  I    +   I
Sbjct: 1189 ECCREVKENPETCSIPFIMLTAKVEDDDIIHGLQLGADDYVLKPFTPGILKAKVSSLI 1246


>gi|217978617|ref|YP_002362764.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
 gi|217503993|gb|ACK51402.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
          Length = 1792

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G   L   NG EA+E  R     ++++MD+ + ++ G
Sbjct: 1672 RTVLLVDDDARNIFALSGVLERRGMSVLTASNGGEAIESLRARPEIEIVLMDVMMPDMDG 1731

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E  ++++ +   + +P++A+TA AMKGD E+    G   Y++KP+     +  ++ ++ 
Sbjct: 1732 YETMQRVRTEPAFRRLPIVALTARAMKGDREKCIDAGASDYLAKPVDREQLLAVLRMWLH 1791

Query: 122  E 122
             
Sbjct: 1792 R 1792



 Score = 54.7 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 41   LARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE 100
            LA  ++P  I++++ L +  G  +  Q+K+    + IPV    A     D       G  
Sbjct: 1443 LADLYRPAAILLNLGLADPPGWNVLAQLKQSIATRHIPVA---ATGAIEDRHYALSRGAF 1499

Query: 101  AYISKPISLSIFMETIKKY 119
             ++  P+        + + 
Sbjct: 1500 DFLEAPVRPGDLKAALMRL 1518


>gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 232

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+    +L    ++   Y      +G EA+ L    K D+I++D+ L +I+
Sbjct: 1   MQKRILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLPKIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ +  +E S+   +PV+ ++A     D+      G + YISKP S+      ++  I
Sbjct: 61  GMDLLRHFRESSK---VPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|315649484|ref|ZP_07902569.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315274957|gb|EFU38332.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 1219

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK+++V+D+  N+     ++E          NG EA+EL + +   D+++MD+ + E+ G
Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQDNPDYDLVLMDMMMPEMDG 1158

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  + ++E  E +++P+IA+TA AMK D  +  + G   Y+ KPI     +  ++ ++
Sbjct: 1159 YEAMRLLREMPEFEKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217



 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K ++IVED+++      +LI            G EAL   R+ + D +++D+ L +++G
Sbjct: 952  MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRYDCMVLDLMLTDMTG 1011

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
             E+  QI++D  L ++P+I  T   +   EE   +   E+ I K + S    ++
Sbjct: 1012 FELLDQIRDDENLMDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065



 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+    ++  D+    G+ AL    G   LE+A+ ++PD II+DIQL  I G  + 
Sbjct: 834 LIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMAKSYRPDAIILDIQLPVIDGWSVM 893

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            ++K  +  + IPV  ++   +  + ++    G  AY+ KP S       
Sbjct: 894 GELKSSAVTRHIPVHVIS---VVDEVKQGLMMGAIAYLKKPSSREALENA 940


>gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 234

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 10  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ D     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 70  LEVARRLRADGHT--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|239996813|ref|ZP_04717337.1| two-component system response regulator (hybrid family) protein
           [Alteromonas macleodii ATCC 27126]
          Length = 366

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ +   ++    Y      +G  AL++ +Q  PD+I++DI +  + G E+
Sbjct: 13  ILVVDDEPANIDILLGILGPY-YNVKVAPSGTIALKITQQFTPDLILLDIMMPGMDGFEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++K +  L  IPVI VTA     DEE+  K G   YI+KP+S SI +  +K +I
Sbjct: 72  CKKLKANEALSHIPVIFVTALTQGEDEEKGFKLGAVDYITKPVSPSITLARVKTHI 127


>gi|237718248|ref|ZP_04548729.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229452432|gb|EEO58223.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1324

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1073 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQASSLQPQMIVSDIMMPVMSGLE 1131

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1132 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1188


>gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 224

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K   
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D+     + R+ +   G+      +G   LE A     D+I++D+ + +++G
Sbjct: 1   MIRILLVDDDLELCSMQREYLSNEGFAVQMCHDGERGLEEALSGDYDLILLDVMMPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ ++++  S    IPV+ +TA     D     + G + Y+SKP +    +  ++  + 
Sbjct: 61  IDVLRRLRNHS---NIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|254416266|ref|ZP_05030020.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176948|gb|EDX71958.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 506

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ +  D +  SG+  L  ++G  AL+     KPD+I++D+ +  I G E 
Sbjct: 19  IVIVDDTPHNLGVLFDFLTDSGFKVLVAQDGQSALQKVEYAKPDLILLDVMMPGIDGFET 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +   ++IPV+ ++A +   D+ +    G   +I+KP+        +  ++
Sbjct: 79  CRRLKANPATRDIPVLFLSALSDAVDKVKGFNLGAVDFITKPVQQEEVKARVTTHL 134


>gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
 gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
          Length = 1390

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 55/116 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++I +DN         L+  +GY      +G +ALE  R   PD+++ D+ +  + GL
Sbjct: 637 ARILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAELPDLVVSDVMMPGLDGL 696

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           E+   ++ +S    +PV+ ++A A +         G + Y+ KP + +  +  +  
Sbjct: 697 ELVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHA 752


>gi|71066478|ref|YP_265205.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039463|gb|AAZ19771.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 234

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 2/125 (1%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE- 58
           M K +++IVED     ++    +E +G+ +LQ  +  EA +    H+P +I++D  L   
Sbjct: 1   MSKEQILIVEDEAAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDHRPALILLDWMLPGD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SG++  + +K D+ L EIPVI +TA + +  +      G + Y++KP S    +  IK 
Sbjct: 61  KSGIDFCRMLKNDALLSEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKA 120

Query: 119 YIGEA 123
            +  +
Sbjct: 121 VLRRS 125


>gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKE--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
 gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
          Length = 1159

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V++V+D+  N+     ++E  G   +   NG   +E+ +     D+++MD+ + E+ G 
Sbjct: 1025 TVLVVDDDVRNVFAITSILELYGLNVIHAENGRRGIEMLQSDPSIDLVLMDVMMPEMDGY 1084

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
                 I+    + ++P+IAVTA AM  D ++    G   YI+KP+ +   +  I+  +
Sbjct: 1085 TTMTAIRTMPRIADLPIIAVTAKAMPDDRQKCLDAGATDYITKPVDVDELLACIRTRL 1142


>gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 225

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I +D+    +L +  +++ GY      +G EA     + +  + ++D+ +  + G
Sbjct: 1   MIHILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARLAEEQIHLAVVDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+      + PVI +TA     D+E+    G + Y++KP      +  IK  + 
Sbjct: 61  YQLCEEIR---RYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 858

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 5/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59
           KK+++VEDNELN ++  ++++ +G+      +G  A+   +Q    + D+I+MDIQ+  +
Sbjct: 735 KKILLVEDNELNREIAVEILKEAGFEVESAEDGEIAVRKMKQAADGQYDLILMDIQMPNM 794

Query: 60  SGLEITKQIKEDSELQE--IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G E T+QI+   +  +  IP+ A+TA A + D +   K G   +I+KP+ +   ++ + 
Sbjct: 795 DGYEATRQIRALPDAAKAGIPIFAMTANAFEEDRQNALKAGMNGHIAKPLDIPHLLQVLA 854

Query: 118 KYI 120
             +
Sbjct: 855 DVL 857



 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 10/124 (8%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58
           + ++ +D+         ++   G     T +G EA+      + +  +  V I+D  + +
Sbjct: 596 RALVADDDTDTCLSVSTMLSKIGMRPEWTISGREAVIRTRYAMEQGDEFSVYIIDWLIPD 655

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+EI +QI++    +  P+I +TA+     EE  R  G  A+  KP+ LS      ++
Sbjct: 656 MNGIEIVRQIRKVIR-KSCPIIILTAYDWADIEEEARAAGVTAFCEKPLFLSEL----RR 710

Query: 119 YIGE 122
            + E
Sbjct: 711 VLAE 714


>gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2028

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 55/117 (47%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++V+DN         L+           NG +ALE  R   PD+++ D+ +  + G  
Sbjct: 1657 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQPPDLVLADVMMPGLDGFG 1716

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + ++ D + + IP+I ++A A         + G + Y+ KP S    +  ++ ++
Sbjct: 1717 LVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHL 1773



 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN         L+    +       G  AL  AR + P +II D+ +  ++GL
Sbjct: 641 ARILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANPPSLIISDVMMPGVNGL 699

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ + ++ D+  + IP++ ++A A +    +    G + Y+ KP S    +  +   +
Sbjct: 700 ELVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALL 757


>gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
 gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
          Length = 233

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++ ++D    + L    +E   ++     +  EAL+   +   D++++DI + E++G
Sbjct: 1   MKTILCIDDEPRMLDLLTLYLEPL-FLCRAMTSIQEALDFLEEEHVDLVLLDIMMPEMNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I++     ++P+I +TA     D  +    G + YI KP      +  I   + 
Sbjct: 60  WQVCQEIRK---FWDVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 234

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED++   +L RD +E + +      +G    E A     D+I++D+ L    G
Sbjct: 1   MKRILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAEDFDLILLDLMLPSADG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I++    ++ P++ V+A   + D+ R    G + YI KP S +     +K +I 
Sbjct: 61  FAVCRAIRQK---KDTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
 gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
          Length = 239

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D +  +   +   E  GY      NG EAL +A + +  +I+MD+ +  + G
Sbjct: 8   MYNILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEEIHLILMDVMMPVMDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  ++++EDS    IPVI +TA +   D+      G + Y++KP +    +   K  I 
Sbjct: 68  IQTVRKLREDSI---IPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|222085607|ref|YP_002544137.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221723055|gb|ACM26211.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 133

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 94/123 (76%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+VMIVEDNELNMKLFRDLIE SGY  +QTRNGMEAL+LAR+H+PD+I+MDIQL E+S
Sbjct: 11  MPKQVMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARKHRPDLILMDIQLPEVS 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED +L  IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ETIK Y+
Sbjct: 71  GLEVTKWLKEDDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 130

Query: 121 GEA 123
           G+A
Sbjct: 131 GDA 133


>gi|313158368|gb|EFR57767.1| putative sensory transduction protein RegX3 [Alistipes sp. HGB5]
          Length = 226

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++V+D E   ++ +  +E  GY      +  +AL +    +  +I++D+ + E+
Sbjct: 1   MTKHKILVVDDEESLCEILQFNLEVEGYEVDTAYSAEQALGM-HPERYSLILLDVMMGEM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG ++ +Q++   E   +P+I  TA   + D       G + YI+KP S+   +  ++  
Sbjct: 60  SGFKMARQLRAQPETAAVPIIFCTAKDTEDDTVAGLNIGADDYIAKPFSVREVLARVRSV 119

Query: 120 IGE 122
           +  
Sbjct: 120 LRR 122


>gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 232

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M +  ++IVED +         +   GY      NG+EALE+      D+ I+D+ + ++
Sbjct: 1   MSQSHILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATPIDLAIVDVMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+  T +++E       PVI ++A + + D+      G + Y++KP      +  +   
Sbjct: 61  DGITFTMKLREH---HHFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Eubacterium eligens
           ATCC 27750]
 gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Eubacterium eligens
           ATCC 27750]
          Length = 223

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +    +++ + Y      NG  AL+   +   D +IMDI +  + G+ 
Sbjct: 2   RILLVEDDRSLSRAVSTILQKNNYSVDCVENGQMALDYLEEDIYDAVIMDIMMPVMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             K +++      IPV+ +TA     D+      G   Y++KP      +  I+  +  +
Sbjct: 62  ALKNLRKCG--SNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIR-VLTRS 118


>gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
 gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
          Length = 1334

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGLE 63
            +IVEDN  N ++ R+L+E  G       NG EA+E+  +     DV++MD+Q+  + G  
Sbjct: 987  LIVEDNLNNQQIARELLEDEGATVTIANNGKEAIEILERTPALFDVVLMDLQMPVMDGFN 1046

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T+ I+E   L+E+P+IA+TA AM  D +     G   +I KP  L+  ++TI+KY G 
Sbjct: 1047 ATRYIRESLGLKELPIIAMTANAMASDRDACLAAGMNDHIGKPFDLNNLIQTIRKYSGR 1105



 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
           +V++V+DN     L + + E+  +      +G +AL+L +Q +        + +D Q+  
Sbjct: 837 RVLVVDDNPTACDLIKRMGESLKWTVDVATSGDQALQLMKQQRDNGITYGALFIDWQMPG 896

Query: 59  ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115
           + G + +K ++E       P ++ +TA   +   +R  +     + Y+ KPI+ S+ +++
Sbjct: 897 LDGWQTSKYVRELMPADNAPMIVMITAHDREMLLQRSEEDQALLDGYLVKPITASMLLDS 956

Query: 116 I 116
           +
Sbjct: 957 V 957


>gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+       +  +   G+      +G EAL   +  +PD+I++D+ L  + G
Sbjct: 1   MPSLLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+     +++P+I +TA +   D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRQIR---RTEQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 234

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L    +E  G+   +  +G++AL      K D++I+DI +  + G +
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++     +IPV+ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 73  VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128


>gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 250

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+++  +  PD+I+MD+ L +I G  +
Sbjct: 13  IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++     +PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 73  TRRIRQNGVA--VPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 128


>gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 229

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED     +L +D +E S +      +G + L+L      D+II+DI L  + G
Sbjct: 1   MSRVLIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTEDFDMIILDIMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+E    ++IP++ V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKQIREK---KDIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLE 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 230

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|75675623|ref|YP_318044.1| response regulator receiver [Nitrobacter winogradskyi Nb-255]
 gi|74420493|gb|ABA04692.1| response regulator receiver [Nitrobacter winogradskyi Nb-255]
          Length = 121

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/121 (64%), Positives = 103/121 (85%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T NG EAL+L R+ +PD+++MDIQL ++S
Sbjct: 1   MAKTVLIVEDNELNMKLFRDLLEAHGYHTSGTSNGFEALDLVRKLRPDLVLMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET+++++
Sbjct: 61  GLDVTRWIKDDPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|148256094|ref|YP_001240679.1| putative response regulator in two-component regulatory system
           (CheY-like protein) [Bradyrhizobium sp. BTAi1]
 gi|146408267|gb|ABQ36773.1| putative response regulator in two-component regulatory system
           (CheY-like protein) [Bradyrhizobium sp. BTAi1]
          Length = 121

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/121 (64%), Positives = 104/121 (85%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T +G+EAL++ R+ +PD+I+MDIQL ++S
Sbjct: 1   MGKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSSGVEALDIVRRTRPDLILMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ IK+D +L+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET++++I
Sbjct: 61  GLEVTRWIKDDPDLRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396]
 gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396]
          Length = 229

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED     +     ++  GY  +   NG E LE+A +   D+I++D+ L E+ 
Sbjct: 1   MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++++   +   ++ +TA  +  D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQQE---KNTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|260174235|ref|ZP_05760647.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
 gi|315922504|ref|ZP_07918744.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696379|gb|EFS33214.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1343

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN    K+   + E   Y      +G E LE A   +P +I+ DI +  +SGLE
Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQASSLQPQMIVSDIMMPVMSGLE 1150

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K + +   IPV+ +TA   +       + G + YISKP ++ I +      I
Sbjct: 1151 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1207


>gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 233

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L +  +++  ++++DI + +I G+ 
Sbjct: 5   TILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +I+E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKIRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   ++I +D     +L    ++  GY  +   +G  AL+  + H  D+ I+DI +  +
Sbjct: 1   MKQVTILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHSIDLAILDIMMPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T+ I+E      +P+I ++A     D+      G + Y++KP +    +  +   
Sbjct: 61  DGYEVTRLIREQ---HNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|159897134|ref|YP_001543381.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890173|gb|ABX03253.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 355

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 67/117 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+E N  L +  +    Y  +   NG +AL+  + H  D+I++DI +  ++G E
Sbjct: 7   RILVVDDSEDNRYLLQRQLLRRNYGVVLAENGQQALDYVQSHTIDLILLDIMMPVMNGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K++ +L+ IPVI V+A     +  +  + G E Y++KP + ++    I+  +
Sbjct: 67  VLQNLKQNEQLRHIPVIIVSAADDMENVVKGIQMGAEDYLAKPFNTTLLRARIEASL 123


>gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 226

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E        L+   G+      NG++A+    ++  D++++D+QL   SG
Sbjct: 1   MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++ S    +PVI +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRQLRQRS---SVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|306819875|ref|ZP_07453529.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552122|gb|EFM40059.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 236

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K    ++IVED +    + +  +E   Y   Q  +G E LE A  ++ D+I++DI L  
Sbjct: 1   MKDKVHILIVEDEKNISDILKFNLEKESYDISQRFDGKEGLEFALSNEIDLILLDIMLPS 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G EI KQI++    +  P+I +TA   + D+    + G + YI+KP S+   +  +K 
Sbjct: 61  MDGFEICKQIRK---TKNTPIIMLTAKEEEVDKVLGLELGADDYITKPFSVREVVARVKA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 NVRR 121


>gi|293605362|ref|ZP_06687745.1| sensor histidine kinase/response regulator [Achromobacter piechaudii
            ATCC 43553]
 gi|292816234|gb|EFF75332.1| sensor histidine kinase/response regulator [Achromobacter piechaudii
            ATCC 43553]
          Length = 1116

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 6/125 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH------KPDVIIMDIQL 56
            + V++VED+  N+     ++E +G      RNG EAL+   +         D+++MDI +
Sbjct: 991  RTVLVVEDDVRNVFALSSILEPTGLRVEIARNGREALDALERAGGEGVPAIDLVLMDIMM 1050

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ G    + I+   E + +P+IA+TA AMK D+E+    G   YI+KP+ +   +  +
Sbjct: 1051 PEMDGYTAMRHIRNRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVERLLSLV 1110

Query: 117  KKYIG 121
            + ++ 
Sbjct: 1111 RVWMR 1115



 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++++ED+E    +  DL    G+  L      + LELA   +P+ I++D+ L + SGL
Sbjct: 723 RSILVIEDDERFASILADLAREMGFGCLTAHTAADGLELALHKRPNAIVLDVNLPDFSGL 782

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +  Q+K +   + IPV  V+   +    +     G   Y  KP+     +E +++ 
Sbjct: 783 GVLDQLKRNPHTRHIPVHVVS---VADYAQEAMGRGAVGYALKPVKREELVEALRRL 836



 Score = 69.4 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 49/94 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED++   +  R L+       +       ALEL R    D ++MD+ L +ISG 
Sbjct: 845 RRVLVVEDDDRQRESVRQLLARDDVEIVPAATAAAALELLRDATFDCVVMDLNLPDISGY 904

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
           E+ +Q+ E   +   PVI  T  A+  DEE+  +
Sbjct: 905 ELLEQMAEQESVSFPPVIVYTGRALSRDEEQHLR 938


>gi|262370701|ref|ZP_06064026.1| two-component system response regulator [Acinetobacter johnsonii
           SH046]
 gi|262314501|gb|EEY95543.1| two-component system response regulator [Acinetobacter johnsonii
           SH046]
          Length = 254

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L +  +E  G++     +  +   L ++    +I++D  L    GL 
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +   + P+I +TA     D     + G + Y+ KP + +  +  I+  +  
Sbjct: 82  ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138


>gi|225628912|ref|ZP_03786946.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo]
 gi|260167230|ref|ZP_05754041.1| Probable transcriptional regulator ycf27 [Brucella sp. F5/99]
 gi|261756634|ref|ZP_06000343.1| response regulator receiver [Brucella sp. F5/99]
 gi|225616758|gb|EEH13806.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo]
 gi|261736618|gb|EEY24614.1| response regulator receiver [Brucella sp. F5/99]
          Length = 238

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D++    L  + ++  G       NG E L++  +   D++I+D+ L   SG+
Sbjct: 5   AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLNRTPIDLVILDVMLPGKSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + ++       +P+I +TA A   D+    + G + YI+KP      +  I+  +  
Sbjct: 65  EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121


>gi|218528959|ref|YP_002419775.1| response regulator receiver protein [Methylobacterium
           chloromethanicum CM4]
 gi|218521262|gb|ACK81847.1| response regulator receiver protein [Methylobacterium
           chloromethanicum CM4]
          Length = 126

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 82/122 (67%), Positives = 106/122 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  L+T NG+EA+ELAR H P++I+MDIQL E+S
Sbjct: 1   MKKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARAHHPELILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D +L+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T+++YI
Sbjct: 61  GLEVTKWLKDDDDLRNIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRRYI 120

Query: 121 GE 122
           G+
Sbjct: 121 GD 122


>gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 243

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+    ++    +    Y  +   NG + L    Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++ +        P+I ++A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICRRARAMERY--TPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRR 122


>gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 228

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+M+ +D    ++     +   GY      NG +AL+LAR+ +P V ++D+ + E++G E
Sbjct: 8   KIMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLAREFRPHVAVLDVMMPEMNGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +KE  +   I VI +TA     D  +  K G + Y+ KP S +  +  I+  + 
Sbjct: 68  VCQSLKETED--NIAVIMLTAKDDVDDRVKGLKLGADDYVVKPFSFNELLARIEARLR 123


>gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 235

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED E    L R  +  +GY      +G +A+  A +   D I++D+ L  + G E
Sbjct: 2   RVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLMLPGLDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        P++ +TA     D       G + Y++KP S       ++  I  
Sbjct: 62  VCRRLRAARRWS--PILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRR 118


>gi|75910975|ref|YP_325271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704700|gb|ABA24376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1195

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +K++I++D+  N+     L+E+     L   NG + +EL + +   + ++MD+ + E+ G
Sbjct: 1075 RKILIIDDDLRNIFAITSLLESYQMQVLFAENGRDGIELLQANSDINAVLMDVMMPEMDG 1134

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T+ I++  + + +P+IA+TA AM GD E+  + G   YI+KP+     +  ++ ++
Sbjct: 1135 YETTRSIRQQKQFRTLPIIALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWL 1193



 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I++D++   ++  D+    G+ A+ + N  + L LA+Q++P+ I +DI + ++ G  + 
Sbjct: 810 LIIDDDDKFARILLDMARQQGFKAIVSLNSKQGLALAQQYQPNAITLDIYMPDMDGWTLL 869

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSIF---METIKKYIG 121
            ++K D + + IPV  ++      D E R  + G   ++ KP+S  I    +  IK +I 
Sbjct: 870 DRLKHDPQTRHIPVHILS----VDDREQRALQLGAITFLQKPVSPEILNHTLTEIKSFID 925

Query: 122 E 122
            
Sbjct: 926 R 926



 Score = 90.2 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++++ED+ +  +   +LI      ++    G  ALE+ R    D I++D+ L ++SGL
Sbjct: 929  KRLLVIEDDPVQAQSIIELIGNGDVQSMAVNTGAAALEILRSQHFDCIVLDLGLPDMSGL 988

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ +QIK++  L ++P+I  T   +   EE   +   E+ I K + S    ++
Sbjct: 989  ELLEQIKQEPNLVKLPIIVYTGKEISRQEETQLRRLAESIIIKNVRSPERLLD 1041


>gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
 gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
          Length = 230

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|119387030|ref|YP_918085.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377625|gb|ABL72389.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 229

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 3/117 (2%)

Query: 1   MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M +    V++VED     ++ +  +E  G+  +   NG EA+ L  + +PD+I++D  L 
Sbjct: 1   MAQTQPCVLVVEDEGAQREVLKYNLEAEGFDVVLAENGDEAMLLVAEEQPDLIVLDWMLP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            +SG+EI +++K D   ++IP+I ++A + + D  R  + G + Y+ KP S+   M 
Sbjct: 61  NVSGIEICRRVKADPSTRQIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMA 117


>gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 232

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D +    L    +E  GY      +G +A       + D+ ++DI L +I 
Sbjct: 1   MDTHILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQEFDLAVLDIMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+ D   +  PVI +TA   + D+      G + Y+ KP      +  +K  +
Sbjct: 61  GFELLRTIRAD---RTYPVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|238925300|ref|YP_002938817.1| two-component response regulator [Eubacterium rectale ATCC 33656]
 gi|238876976|gb|ACR76683.1| two-component response regulator [Eubacterium rectale ATCC 33656]
 gi|291524406|emb|CBK89993.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527577|emb|CBK93163.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++ +D +  +      + + GY  +  RNG+EAL++ + +   +++MDI +  + G
Sbjct: 1   MYKVLVCDDEKDIVSAISIYLTSDGYEVIPARNGLEALDIVKHNDVHLVLMDIMMPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E   +I++   +  +PVI +TA +   D+      G + Y++KP +       +K  I 
Sbjct: 61  IEAMVEIRK---ISNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNPVELQARVKSQIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
 gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
          Length = 281

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IVED      L    ++   Y   +     EALE   ++  D+ I+DI L ++S
Sbjct: 51  MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 110

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I++       P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 111 GLTICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 167

Query: 121 GE 122
             
Sbjct: 168 RR 169


>gi|145641399|ref|ZP_01796978.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae R3021]
 gi|145273942|gb|EDK13809.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.4-21]
          Length = 164

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED     ++    +    Y  ++  +   A+   +++ P +I++D  L   S
Sbjct: 1   MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  + IK+      IP+I +TA + + D       G + YI+KP S  I +  I+   
Sbjct: 60  GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|83955851|ref|ZP_00964393.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83839856|gb|EAP79033.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 239

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    K     +E +G  A    N +E      +   D+I++D+ +    GL 
Sbjct: 6   RILVVDDHSEIRKSVTSYLERNGMRASAAGNAVEMDARLAEAHFDLIVLDVMMPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++++     IP++ +TA     D      GG + Y++KP +    +  I   +  
Sbjct: 66  ACRRLRKEG---HIPILMLTALGDDEDRIAGLDGGADDYLAKPFNPKELVARINAILRR 121


>gi|328953029|ref|YP_004370363.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453353|gb|AEB09182.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 242

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+    +  R  + T GY  ++   G E L  A    PD+I++D+ L ++ 
Sbjct: 1   MKPSILLIEDDANIRRFLRLTLVTQGYELIEAETGQEGLAQAFARVPDLILLDLGLPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I KQI+E     ++PVI ++A   + ++      G + Y++KP  +   +  I+  +
Sbjct: 61  GIDIIKQIRE---WSQVPVIVLSARGQEREKIINLDAGADDYLTKPFGMGELLARIRVVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 223

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
 gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
          Length = 1075

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++ EDN++N  L   ++E  G I     +G +A+E   ++K D+I+MD+Q+  + GL
Sbjct: 824 KKVLLAEDNQMNQFLATTILEEWGVIVEVAEDGKQAIEKFSENKYDLILMDMQMPIMDGL 883

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E T+ I++      +P+IA+TA A+KGD +R  + G   Y+ KP +     E I
Sbjct: 884 EATRIIRQQLR-STVPIIALTANAIKGDRQRCIEVGMNDYLPKPFAQKDLQEKI 936


>gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1230

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 75/116 (64%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN +N ++  +L++++GY      NG  AL++    + D ++MDIQ+  + GL  
Sbjct: 1112 ILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDGLTA 1171

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK++++    +E+PVIA+TA AM GD E+    G  A+I+KPI L+   +T+ ++I
Sbjct: 1172 TKELRKRYTKEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQWI 1227



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K ++V+DN   ++++   +    +      NG EAL        D++++D  + E+ G+E
Sbjct: 968  KTLVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKLEHRPVDLLLLDWMMPEMDGVE 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + K +     D  L++ P +I +TA+A +  +E +      A + KP   S   + I
Sbjct: 1028 VIKALDAMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDIYAMLQKPFKASALFDEI 1084


>gi|117926854|ref|YP_867471.1| response regulator receiver protein [Magnetococcus sp. MC-1]
 gi|117610610|gb|ABK46065.1| response regulator receiver protein [Magnetococcus sp. MC-1]
          Length = 564

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 61/113 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+ +N  +   L+E  G+      NG   +EL    +PD+++MDI++  ++G E
Sbjct: 2   KILIVDDDRINSTILTRLLEKDGHKVFTAPNGQRGVELFSDERPDLVLMDIRMPLMNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             ++IK  S  + +P+I +TA        +    G + +++KP + +I    I
Sbjct: 62  AARRIKSLSPNRFVPIIFLTAVTDDEGLAKCIDAGGDDFLTKPFNRTILQAKI 114


>gi|311893560|dbj|BAJ25968.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED+E   +     +E  GY      +G+  LE  R+   D++I+D+ L  + G+ 
Sbjct: 22  RVLLVEDDETIRRSIALALERYGYRVATAPDGLSGLEAFREGGHDLLILDVMLPHLDGIG 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E S+    P++ ++A     D     + G + Y+ KP+  ++ +  I+  +  A
Sbjct: 82  LCRRIRESSQA---PILMMSARGHSLDVVSGLEAGADDYVVKPVDTTVLVARIRSLLRRA 138


>gi|298483350|ref|ZP_07001528.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
 gi|298270479|gb|EFI12062.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
          Length = 1353

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L+  NG EALE  ++++ D+I+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SL+I    I+  + 
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220


>gi|295087206|emb|CBK68729.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
            B-, and HSP90-like ATPase./Response regulator receiver
            domain./Two component regulator propeller./Bacterial
            regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
            domain. [Bacteroides xylanisolvens XB1A]
          Length = 1298

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L+  NG EALE  ++++ D+I+ D+ +  + G++
Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1107

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SL+I    I+  + 
Sbjct: 1108 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1165


>gi|294647433|ref|ZP_06725019.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292637224|gb|EFF55656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1298

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L+  NG EALE  ++++ D+I+ D+ +  + G++
Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1107

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SL+I    I+  + 
Sbjct: 1108 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1165


>gi|293374016|ref|ZP_06620355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292630977|gb|EFF49616.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1353

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L+  NG EALE  ++++ D+I+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SL+I    I+  + 
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220


>gi|317051227|ref|YP_004112343.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946311|gb|ADU65787.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1000

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN LN ++   ++   G       NG EAL +  Q   DV++MD+++  + GL 
Sbjct: 748 RVLLVEDNALNREVASGMLRGMGVEITLVCNGQEALAILDQQDYDVVLMDMRMPVMDGLS 807

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T+QI+ +     +P+IA+TA AM  D E  +  G   +I+KP+S  +    ++K+ G 
Sbjct: 808 ATRQIRRNPRWNAMPIIAMTANAMHSDVEACKAAGMNDHIAKPVSRKLLESALRKWTGR 866


>gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   ML---KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M+     ++I +D +    L    +E   Y   +  NG + L      + D+ I+D+ L 
Sbjct: 1   MMLLATNILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERLDLAILDVMLP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ G  I +QI+E       PVI +TA   + D+      G + YI+KP      +  +K
Sbjct: 61  DMDGFSICQQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVK 117

Query: 118 KYIGE 122
             +  
Sbjct: 118 AQLRR 122


>gi|218439786|ref|YP_002378115.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 7424]
 gi|218172514|gb|ACK71247.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 7424]
          Length = 308

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+     L +  +E  GY  +  ++G E +    + +P +I++D  + E+ G   
Sbjct: 15  ILVVDDDRSTRTLLKVAMEEEGYQVITAKDGEECINEFNRCQPHMILLDAVMPEMDGFTC 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E SE  +IP++ +TA   +   ++    G   YI+KPI  ++  + +K+ +
Sbjct: 75  CQRLRELSEGSQIPILMITALDDQDSIDQAFTCGAVDYITKPIHWAVLAQRVKRLL 130


>gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21]
 gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 224

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +      +  +E   Y      +G E L+LA +   D+I++D  L +  GL 
Sbjct: 2   RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++E   L   P++ +TA     D       G + Y++KP + +  +  ++  +  +
Sbjct: 62  VLKELRERKNL--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRS 119


>gi|160887460|ref|ZP_02068463.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294805850|ref|ZP_06764723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|156107871|gb|EDO09616.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294446949|gb|EFG15543.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1353

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L+  NG EALE  ++++ D+I+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SL+I    I+  + 
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220


>gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1]
 gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1156

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 77/121 (63%), Gaps = 3/121 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KKV++VED + N      ++E   +      NG+EA+E  +Q+  D+I+MD  + +++G+
Sbjct: 1034 KKVLLVEDVKTNQLFMSIILEGLHFEVATADNGIEAVEAFKQNSYDLILMDEHMPKMNGI 1093

Query: 63   EITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E TKQI     ++ L   P+IA+TA A+KGD ER  K G + Y++KPI+ +IF++ ++K 
Sbjct: 1094 EATKQILAIEGENNLPHTPIIALTANAIKGDRERFLKAGMDEYVTKPINQNIFVKVLRKV 1153

Query: 120  I 120
            +
Sbjct: 1154 L 1154


>gi|319936818|ref|ZP_08011230.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
           sp. 29_1]
 gi|319808086|gb|EFW04658.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
           sp. 29_1]
          Length = 233

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K   +++VED+     L    ++   Y  L   NG  A+  A  H PD+I++D+ L +
Sbjct: 1   MNKTSTILVVEDDSAVRNLISTTLQAHNYKYLLASNGETAILEASSHNPDIILLDLGLPD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G+EI K+++       +P+I ++A +   D+      G + Y++KP S+   +  ++ 
Sbjct: 61  IDGIEIIKKVRS---WSNMPIIVISARSEDSDKIEALDVGADDYLTKPFSVEELLARLRV 117

Query: 119 YIGE 122
            +  
Sbjct: 118 TLRR 121


>gi|323343418|ref|ZP_08083645.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269]
 gi|323095237|gb|EFZ37811.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269]
          Length = 1348

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDN   + L R++++   Y      NG+EALE  R+  PD++I D+ +  + G 
Sbjct: 1090 KRILVVEDNNEMVVLLRNILQDH-YTIDAAANGIEALEWIRESGPDLVISDVMMPRMDGF 1148

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +   IK+D  L  IPVI +TA  +  D+ +  K G + Y++KP +  + +  I      
Sbjct: 1149 ALCGAIKKDVMLCHIPVILLTAKTLDKDKIKGYKEGADMYLNKPFNPELLLSMIGNVFHR 1208

Query: 123  A 123
            +
Sbjct: 1209 S 1209


>gi|261253471|ref|ZP_05946044.1| response regulator [Vibrio orientalis CIP 102891]
 gi|260936862|gb|EEX92851.1| response regulator [Vibrio orientalis CIP 102891]
          Length = 240

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEI 59
           M  K+++V+D++   +L  + +    Y      +G +          PD+I++D+ L   
Sbjct: 1   MSAKILVVDDDQEICELLEEYLTKQSYQVSTVNDGEQMKAEIELNGYPDLILLDVMLPGD 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + +Q +  S    +P+I +TA +   D+    + G + YI+KP +       IK  
Sbjct: 61  DGFTLCQQTRRQS---SVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAV 117

Query: 120 IGEA 123
           +  A
Sbjct: 118 LRRA 121


>gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 234

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 74  CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128


>gi|254524497|ref|ZP_05136552.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14]
 gi|219722088|gb|EED40613.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14]
          Length = 236

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+     L  + +  +GY      +G    +L  +   D+I++D+ L    G
Sbjct: 1   MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++  S     PVI +TA A   D     + G + Y++KP      +  I+  + 
Sbjct: 61  LTLCRDLRARS---NTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
 gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
          Length = 792

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+EL  +  + L+    Y      +G  A EL    + D+I+ D+ L  + G+ 
Sbjct: 2   RILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGVG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++  S+  +IP++ +T      D       G + Y+ KP         ++  +  
Sbjct: 62  LCQQLR--SQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRR 118



 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++MIV+D+   ++    L +  G   +      +  E      PD++++D+++ EI G+
Sbjct: 488 ARIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGI 547

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + ++ D + +++P+I +TA        ++   G + +ISKPI     +  I   +  
Sbjct: 548 DLCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607


>gi|197119640|ref|YP_002140067.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
           Bem]
 gi|197089000|gb|ACH40271.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
           Bem]
          Length = 383

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K+  VMIV+D   N+++  + +    Y      +G +ALEL R  KPD+I++DI +  +
Sbjct: 1   MKRQTVMIVDDTPANIEILSETLGEE-YELFFATSGADALELIRADKPDLILLDIMMPGM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+   +K D   ++IP+I VTA   + +E +  + G   Y++KPIS  I    +K +
Sbjct: 60  DGYELCSILKGDPATRDIPIIFVTAMIGEEEEIKGLELGAIDYLTKPISPHIVRARVKNH 119

Query: 120 I 120
           +
Sbjct: 120 L 120


>gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 234

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IVED      L    ++   Y   +     EALE   ++  D+ I+DI L ++S
Sbjct: 4   MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVS 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I+E       P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 64  GLTICQKIREKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 240

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + + IV+D     +L    +   GY      +G E   L  +  PD+II+D+ +    G
Sbjct: 4   SQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + I+  S     PV+ ++A     D     + G + Y+ KP +    +  +K  + 
Sbjct: 64  LSLCRHIRSRS---NTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|307592131|ref|YP_003899722.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
 gi|306985776|gb|ADN17656.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
          Length = 209

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D   +++L  +++   GY   +  NG  AL  A+   PD+I++DI + +++G 
Sbjct: 13  AKILVVDDTIDSLRLMANMLTDQGYNVRKVLNGQMALTAAQSAPPDLILLDINMPQLNGY 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +Q+K +    EIPVI ++A     D+ +    G   YI+KP      +  ++  +
Sbjct: 73  EVCQQLKNNPITAEIPVIFISALDEVLDKVKAFSVGAVDYITKPFYFEELVTRVETQL 130


>gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 232

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     +E  G+   +  +G+EALE+ RQ +  + I+DI +  + G
Sbjct: 1   MENILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEILRQARIQLAIVDIMMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + K+++       IPVI ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 61  IRLVKEVR---RFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1062

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 3/121 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++ ED+ L+    + ++E SGY      +G EAL+   ++  D+I+MD+Q+  ++G+
Sbjct: 939  RRILLAEDDPLSSLTCKRMLEKSGYSVTAANDGQEALQRLTENDFDLILMDVQMPVMNGI 998

Query: 63   EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E TK I+  + L     IP++A+TA+AM GD+E     G   YI+KP+      E I++ 
Sbjct: 999  EATKAIRGANNLGAKSSIPIVAMTAYAMTGDKESFLAAGMNGYIAKPVDKGALFEAIERV 1058

Query: 120  I 120
            +
Sbjct: 1059 L 1059


>gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41]
 gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L    +   G+  ++  +G EAL +      D++++DI +  + G
Sbjct: 1   MTTILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPVDLVVLDIMMPTMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K+++      EIP++ +TA     ++ +  + G + Y++KP         +K  + 
Sbjct: 61  WTLCKELRR--ANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|116872456|ref|YP_849237.1| CheY family two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741334|emb|CAK20456.1| two-component response regulator, CheY family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 220

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I ED+   + +    +  +GY     +NG+EA    ++   D+IIMDI +  + G
Sbjct: 1   MEKILIAEDDVTILGVITAFLTEAGYQVTTAQNGIEAYHFFQKEAFDLIIMDIMMPSMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +T+ I+        P++ +TA + + DE +    G + YI KP S  + ++ ++  + 
Sbjct: 61  YTLTELIRS---TSSAPILMMTALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQVLLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 233

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQE 58
           + ++++V+D           +   GY       G  A EL ++      +++++D  L E
Sbjct: 1   MARILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPE 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SGL + +++++       P++ +TA     D       G + Y+ KP  L   +  ++ 
Sbjct: 61  LSGLSLCQRVRQVDCT--TPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRA 118

Query: 119 YIGE 122
            +  
Sbjct: 119 LLRR 122


>gi|77362188|ref|YP_341762.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877099|emb|CAI89316.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 927

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVEDN +N  +   ++  +G       +G+EAL     +  D+I+MD Q+  + G 
Sbjct: 806 KRILIVEDNPINQIVITKMMIATGCEIKTANDGLEALHCLESYPADLILMDCQMPNMDGY 865

Query: 63  EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + T++I++   + + + ++A+TA A   D+E+    G   +I+KPI+ +   + I   
Sbjct: 866 QCTQKIRQMPNDCKNVLILAITANAFAEDKEKCLSAGMNDFIAKPINKNELYQCINNL 923


>gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 246

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 6/126 (4%)

Query: 1   MLKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M K     +++V+D     +L    +  +G+      +G EA+E+  +  P++I+MD+ L
Sbjct: 1   MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I G  +T++I+++    ++PV+ +TA     D+      G + Y++KP SL   +  I
Sbjct: 61  PDIDGFTVTRRIRQNGI--KVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARI 118

Query: 117 KKYIGE 122
           +  +  
Sbjct: 119 RAILRR 124


>gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 248

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D      L    +  +G+  +   +G  AL    Q +PD++++D+ L ++ G 
Sbjct: 14  ARLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPDMDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E       P++ +TA     D+ +    G + Y++KP  L   +  I+  +  
Sbjct: 74  TVARRLRERDVT--TPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRR 131


>gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 885

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 69/118 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN  N KL   L+   G+   +  NG EA+ +  + KP +I MD+++  + G E
Sbjct: 668 RILVVDDNWTNRKLVVKLLNPLGFHVREAENGQEAIAIWEEWKPHLIFMDMRMPVMDGYE 727

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ IK   + Q   +IA+TA A++ ++  +   GC+ ++ KP  +   ++TI K++G
Sbjct: 728 ATQLIKRHLKGQATVIIALTASALQQEKSIVLSAGCDDFVRKPFRVDQLLQTIVKHLG 785


>gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+    +   + +    Y+     +G EA EL    + D+I++D+ L +I G+ 
Sbjct: 2   KILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVMLPKIDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++ +  S   + P++ +TA     D       G + Y+ KP +L      ++  +  
Sbjct: 62  LCRKFR--SRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRR 118


>gi|92114536|ref|YP_574464.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91797626|gb|ABE59765.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 237

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V +++D+    +L    +   G+  +   NG     L R   PD++I+DI +    GL
Sbjct: 6   ATVAVIDDDAEIRELLHAYLSQHGFRVVLAENGDAVPSLLRDESPDLLILDIMMPGEDGL 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++  S    +P+I +TA + + D     + G + Y++KP +    +  IK  +  
Sbjct: 66  SLCRDLRRHS---NVPIIMLTASSDETDRILGLELGADDYLAKPFNPRELLARIKAVLRR 122


>gi|315922180|ref|ZP_07918420.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313696055|gb|EFS32890.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1322

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVEDNE   +     +    Y   +  NG EA  +A + + D+I+ D+ +  + G 
Sbjct: 1074 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEAEAIANEKEVDIIVSDVMMPGMDGF 1132

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+  ++KE+ +   I +I +TA     +E    + G + Y++KP ++ I    I+  +
Sbjct: 1133 ELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLL 1190


>gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 229

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D +    L    ++  GY   +  +  +AL   + +  D+ ++DI + +I+
Sbjct: 1   MQTRILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDALRFIKDNPVDLAMLDIMMPKIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI K I+E       PVI +TA     D+ +    G + YI+KP +    +  +K  +
Sbjct: 61  GFEICKIIREKYTF---PVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|284051516|ref|ZP_06381726.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 270

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 64/118 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N  L   L++  G+   +  NG EA+ L +Q  P +I MD+ +  I G E
Sbjct: 53  RILVVEDNPVNRLLLTTLLQDVGFEVREAENGQEAIALWQQWHPHLIFMDMHMPVIDGFE 112

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ IK+        V+A+TA A     +     GC+ +ISKP      +ET+ KY+G
Sbjct: 113 ATQYIKQSEVDAIPVVVAITASAFTEQRQNCIDAGCDDFISKPFRREQVLETLTKYLG 170


>gi|260173915|ref|ZP_05760327.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1308

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVEDNE   +     +    Y   +  NG EA  +A + + D+I+ D+ +  + G 
Sbjct: 1060 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEAEAIANEKEVDIIVSDVMMPGMDGF 1118

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+  ++KE+ +   I +I +TA     +E    + G + Y++KP ++ I    I+  +
Sbjct: 1119 ELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLL 1176


>gi|322421476|ref|YP_004200699.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Geobacter sp. M18]
 gi|320127863|gb|ADW15423.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Geobacter sp. M18]
          Length = 534

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ V+D  +N+ L   ++   G+  +   NG+EAL   ++ + D++++D+ + E+ G E
Sbjct: 7   RILCVDDEPMNLTLLEAMLLLRGFEVVTASNGLEALGEIQRGRVDIVLLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++IK +   + IPV+ +TA+A + +     + G E +ISKP   +  +  I   +
Sbjct: 67  VCRRIKAEERYRNIPVVMITAYAARENRIMGIEAGAEDFISKPFDSAEVLARIGMLL 123


>gi|169630331|ref|YP_001703980.1| transcriptional regulatory protein KdpE [Mycobacterium abscessus
           ATCC 19977]
 gi|169242298|emb|CAM63326.1| Probable transcriptional regulatory protein KdpE [Mycobacterium
           abscessus]
          Length = 224

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D    ++  R  +   GY  +   +G  AL  A + +P+V+I+D+ L ++ G
Sbjct: 1   MTRVLVVDDEPQILRAMRINLSARGYEVVTASSGAGALRAAAETQPEVVILDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++      ++PVI ++A     D+      G + Y++KP  +  F+  ++  + 
Sbjct: 61  TEVLAGLR---GWTDVPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|153870359|ref|ZP_01999776.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152073174|gb|EDN70223.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 301

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 69/116 (59%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D+  N+++  ++++ +GY     ++G  AL   ++  PD+I++DI +  I G+E+
Sbjct: 10  VLIVDDHPQNLQVLGNMLKANGYKPAAAQDGTIALAFVQKTHPDLILLDIMMPGIDGIEV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            KQ+K+    ++IPVI +TA +   D+ +  K G   YI+KP      +  IK +I
Sbjct: 70  CKQLKQQEHTRKIPVIFITALSDTRDKLKAFKAGGVDYITKPFVQEEVIARIKVHI 125


>gi|149376372|ref|ZP_01894135.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149359386|gb|EDM47847.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 756

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLE 63
           ++VEDN++N  +   +++  G+      NG +ALE  +  + K D+++MD Q+  + G E
Sbjct: 633 LLVEDNQVNQVVASSMLKKLGHTVTLAENGKQALEALQQGEGKFDIVLMDCQMPVMDGYE 692

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I+E+ E + +PVIAVTA  M+GD +   + G   YI+KP + +     I ++
Sbjct: 693 ATRTIRENPEWRNLPVIAVTANVMQGDRDDCIESGMNDYITKPYNRADLKSIIDRW 748


>gi|85059514|ref|YP_455216.1| putative two-component regulator protein [Sodalis glossinidius str.
           'morsitans']
 gi|84780034|dbj|BAE74811.1| putative two-component regulator protein [Sodalis glossinidius str.
           'morsitans']
          Length = 168

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D     +  R  +  SGY+     NG E + +A ++  D+I++D+ + E++G E
Sbjct: 2   KILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGVFMAEEYYYDLILLDVMMPELNGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K    L + PVI +TA +   D  +  + G + Y+ KP S +  +  I+  +  
Sbjct: 62  V---MKTLDSLLDTPVIFLTAKSTVDDRIKGLELGADDYLVKPFSFAELLARIRTALRR 117


>gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 1358

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++ ED+  N  +   L+E  GY      +G  A+   R    D+++MD+Q+ ++ G 
Sbjct: 1235 RRVLLAEDHPANALVATTLLEDYGYDCEVVPDGGTAIARWRTSAFDLVMMDVQMPDMDGY 1294

Query: 63   EITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E T+QI+           P++A+TA A+KGD E   + G + YI+KP   +   + ++  
Sbjct: 1295 EATRQIRRIEVQETRPRTPILAMTAHALKGDRETCLQAGMDDYIAKPFDAAELEQKLRAL 1354

Query: 120  I 120
            +
Sbjct: 1355 L 1355



 Score =  146 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +DN         L+    +  +   +G +A +  R   P++++ D+ + ++ G  
Sbjct: 610 RVVLADDNADMRDYIHRLLNDD-FDVVAVTDGEQAWQAIRDQLPELVLTDVMMPKLDGFG 668

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK-----K 118
           + ++++ D   + +PVI ++A A +         G + Y+ KP +    +  ++      
Sbjct: 669 LLERLRGDDATRRLPVIMLSARAGEEARVEALDAGVDDYLVKPFNARELLAKVRSQLQIA 728

Query: 119 YIGE 122
           ++  
Sbjct: 729 HLRR 732


>gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 230

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED+    ++    +   G+  +   +G E + L +Q   D+I++DI L +++G
Sbjct: 1   MQRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K I+E S    IPV+ ++A     D+      G + YI+KP S+      +K  I 
Sbjct: 61  MDFLKIIREKS---NIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|316933148|ref|YP_004108130.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315600862|gb|ADU43397.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 240

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     L    + ++        +G E       H+ D++++D+ L    GL +
Sbjct: 8   ILVVEDDRETRALIAKYLRSNNCNVATAADGREMERWIADHRVDLVVLDVMLPGEDGLSL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +S+L   P+I +TA     D     + G + Y+ KP +    +  I+  +  
Sbjct: 68  CRKIRANSQL---PIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRR 122


>gi|261250889|ref|ZP_05943463.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis
           CIP 102891]
 gi|260937762|gb|EEX93750.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis
           CIP 102891]
          Length = 376

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN  N  L   L++   +  L   NG +AL +A    PD+I++DI + E+ G E+
Sbjct: 8   VLVVDDNAENRVLLSGLLKPY-FKVLVAVNGEQALTIASAKLPDIILLDIMMPEMDGYEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K +   + IPVI +TA     DE+R  + G   YI KPIS  I +  I  ++
Sbjct: 67  CLRLKSNPITESIPVIFLTAKTQIEDEQRGFEVGAVDYILKPISPPILLTRINTHL 122


>gi|322417618|ref|YP_004196841.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320124005|gb|ADW11565.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 455

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 62/120 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+DN++N++L   ++    +      +G+ AL+ A    PD+I++D  +  + G
Sbjct: 12  MPSILIVDDNQINLQLLCGMLAGMSWRVRPVASGIMALKAAMAKLPDLILLDAMMPGMDG 71

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +K+    + IP++ +TA   +    +  + G + ++SKP+  S      K  + 
Sbjct: 72  FEVCRHLKQTPATEHIPIVMITALTDQESRMKALRCGADDFLSKPVDRSELQVRTKNLLR 131


>gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 228

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +         ++  GY      NG E L+ A     D I++D+ L E++G
Sbjct: 1   MSRILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++    +  P+I +TA     D       G + Y+ KP ++   +  ++  + 
Sbjct: 61  LEVCRRLRQS---KSTPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 227

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I ED+    +   D++   GY  L   NG  AL   +Q +PD II+DI + E+ G  
Sbjct: 2   KILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQEQPDFIILDIMMPELDGYS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I++  E  + PVI ++A   + D+    + G + YI+KP  +      IK     
Sbjct: 62  VCKEIRKHDE--QTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARR 118


>gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51]
 gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D++  ++  R  +   GY   +  NG++ALE+  +    ++IMDI + ++ G+  
Sbjct: 3   ILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTVHLVIMDIMMPQMDGIRA 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+E+   + IPVI ++A +   D+      G + YI+KP +    +  +K  +  
Sbjct: 63  LMKIREE---RNIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRR 117


>gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550]
          Length = 224

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K   
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 224

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K   
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|17989136|ref|NP_541769.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23500221|ref|NP_699661.1| transcriptional regulatory protein OmpR [Brucella suis 1330]
 gi|62317658|ref|YP_223511.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1
           str. 9-941]
 gi|83269641|ref|YP_418932.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|163844637|ref|YP_001622292.1| hypothetical protein BSUIS_B0474 [Brucella suis ATCC 23445]
 gi|189022907|ref|YP_001932648.1| Response regulator receiver [Brucella abortus S19]
 gi|225686276|ref|YP_002734248.1| putative transcriptional regulator ycf27 [Brucella melitensis ATCC
           23457]
 gi|237817205|ref|ZP_04596197.1| Probable transcriptional regulator ycf27 [Brucella abortus str.
           2308 A]
 gi|254691154|ref|ZP_05154408.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 6
           str. 870]
 gi|254698937|ref|ZP_05160765.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254699728|ref|ZP_05161556.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 5 str.
           513]
 gi|254702863|ref|ZP_05164691.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 3 str.
           686]
 gi|254706012|ref|ZP_05167840.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
           M163/99/10]
 gi|254711685|ref|ZP_05173496.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
           B2/94]
 gi|254732384|ref|ZP_05190962.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 4
           str. 292]
 gi|256029680|ref|ZP_05443294.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
           M292/94/1]
 gi|256043373|ref|ZP_05446306.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256111617|ref|ZP_05452612.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 3
           str. Ether]
 gi|256157833|ref|ZP_05455751.1| Probable transcriptional regulator ycf27 [Brucella ceti M490/95/1]
 gi|256253205|ref|ZP_05458741.1| Probable transcriptional regulator ycf27 [Brucella ceti B1/94]
 gi|256256340|ref|ZP_05461876.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 9
           str. C68]
 gi|256262586|ref|ZP_05465118.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|260544890|ref|ZP_05820711.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564579|ref|ZP_05835064.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260756755|ref|ZP_05869103.1| two-component system response regulator [Brucella abortus bv. 6
           str. 870]
 gi|260760185|ref|ZP_05872533.1| two-component system response regulator [Brucella abortus bv. 4
           str. 292]
 gi|260763423|ref|ZP_05875755.1| two-component system response regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882570|ref|ZP_05894184.1| two-component system response regulator [Brucella abortus bv. 9
           str. C68]
 gi|261220313|ref|ZP_05934594.1| two-component system response regulator [Brucella ceti B1/94]
 gi|261313453|ref|ZP_05952650.1| two-component system response regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261319310|ref|ZP_05958507.1| two-component system response regulator [Brucella pinnipedialis
           B2/94]
 gi|261750193|ref|ZP_05993902.1| two-component system response regulator [Brucella suis bv. 5 str.
           513]
 gi|261753466|ref|ZP_05997175.1| two-component system response regulator [Brucella suis bv. 3 str.
           686]
 gi|265986690|ref|ZP_06099247.1| two-component system response regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265989794|ref|ZP_06102351.1| two-component system response regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993097|ref|ZP_06105654.1| two-component system response regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265996340|ref|ZP_06108897.1| two-component system response regulator [Brucella ceti M490/95/1]
 gi|294853717|ref|ZP_06794389.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026]
 gi|297249702|ref|ZP_06933403.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Brucella abortus bv. 5 str. B3196]
 gi|17984986|gb|AAL54033.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23463825|gb|AAN33666.1| transcriptional regulatory protein OmpR, putative [Brucella suis
           1330]
 gi|62197851|gb|AAX76150.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1
           str. 9-941]
 gi|82939915|emb|CAJ12928.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|163675360|gb|ABY39470.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021481|gb|ACD74202.1| Response regulator receiver [Brucella abortus S19]
 gi|225642381|gb|ACO02294.1| Probable transcriptional regulator ycf27 [Brucella melitensis ATCC
           23457]
 gi|237788018|gb|EEP62234.1| Probable transcriptional regulator ycf27 [Brucella abortus str.
           2308 A]
 gi|260098161|gb|EEW82035.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260152222|gb|EEW87315.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260670503|gb|EEX57443.1| two-component system response regulator [Brucella abortus bv. 4
           str. 292]
 gi|260673844|gb|EEX60665.1| two-component system response regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676863|gb|EEX63684.1| two-component system response regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872098|gb|EEX79167.1| two-component system response regulator [Brucella abortus bv. 9
           str. C68]
 gi|260918897|gb|EEX85550.1| two-component system response regulator [Brucella ceti B1/94]
 gi|261298533|gb|EEY02030.1| two-component system response regulator [Brucella pinnipedialis
           B2/94]
 gi|261302479|gb|EEY05976.1| two-component system response regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261739946|gb|EEY27872.1| two-component system response regulator [Brucella suis bv. 5 str.
           513]
 gi|261743219|gb|EEY31145.1| two-component system response regulator [Brucella suis bv. 3 str.
           686]
 gi|262550637|gb|EEZ06798.1| two-component system response regulator [Brucella ceti M490/95/1]
 gi|262763967|gb|EEZ09999.1| two-component system response regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263000463|gb|EEZ13153.1| two-component system response regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092372|gb|EEZ16625.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|264658887|gb|EEZ29148.1| two-component system response regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819372|gb|EFG36372.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026]
 gi|297173571|gb|EFH32935.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Brucella abortus bv. 5 str. B3196]
 gi|326410637|gb|ADZ67701.1| Response regulator receiver [Brucella melitensis M28]
 gi|326553929|gb|ADZ88568.1| Response regulator receiver [Brucella melitensis M5-90]
          Length = 238

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D++    L  + ++  G       NG E L++  +   D++I+D+ L   SG+
Sbjct: 5   AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + ++       +P+I +TA A   D+    + G + YI+KP      +  I+  +  
Sbjct: 65  EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121


>gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K++IV+D+    +L    +E  G+   +  +G++AL    + K ++ I+DI +  + 
Sbjct: 1   MIPKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVEMAIIDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|298482963|ref|ZP_07001145.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298270935|gb|EFI12514.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1315

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN       +  +       +   +G+EAL+L R H PD+I+ D+ +  ++G E+
Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             K IKED  +  IP+I +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 1120 CKNIKEDITISHIPIILLTARNDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179

Query: 123  A 123
            +
Sbjct: 1180 S 1180


>gi|258592344|emb|CBE68653.1| Response regulator receiver modulated metal dependent
           phosphohydrolase (fragment) [NC10 bacterium 'Dutch
           sediment']
          Length = 336

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 62/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D ++N  L   ++   GY  +   +G  ALEL     PD+I++D+ +  +SG E
Sbjct: 11  TILVVDDQQVNCTLVETILAPQGYEIISALDGERALELVAARPPDLILLDVIMPGMSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  ++KE+   + IP++ VT+ +   D  R  + G + ++SKP   +      +  +
Sbjct: 71  VCTRLKENERTRLIPIVMVTSLSDLQDRIRGIEVGADDFLSKPFHPAELSARARSLL 127


>gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
 gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
          Length = 230

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 236

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 64/117 (54%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED++   KL    +E +GY    +  G +ALE   + + D++++D+ L  I G ++ 
Sbjct: 7   LVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAKRRFDLVLLDLMLPGIDGFDVC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+++  L++IP+I +TA   + D+    + G + Y+ KP S       I+  +  
Sbjct: 67  RKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILKR 123


>gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 240

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 11/127 (8%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--------HKPDVIIMDIQ 55
            V+IVED E   +    L+E  G+      +G  AL+               D++++D+ 
Sbjct: 8   HVLIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLM 67

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           L  +SG E+ +Q++       +PVI VTA   + D+    + G + Y++KP S    +  
Sbjct: 68  LPGMSGTEVCRQLRS---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIAR 124

Query: 116 IKKYIGE 122
           I+  +  
Sbjct: 125 IRAVLRR 131


>gi|237711967|ref|ZP_04542448.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229454662|gb|EEO60383.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1383

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   L+    Y  L+  NG EALE+  + + D+I+ D+ + E+ G+E
Sbjct: 1133 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1191

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++K   E   IP+I +TA     D     + G + YI KP+ LS+    I   +  
Sbjct: 1192 LCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1250


>gi|153807551|ref|ZP_01960219.1| hypothetical protein BACCAC_01831 [Bacteroides caccae ATCC 43185]
 gi|149129913|gb|EDM21125.1| hypothetical protein BACCAC_01831 [Bacteroides caccae ATCC 43185]
          Length = 1381

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVED++      + L     Y  L   NG E +++A +  PD+II D+ +    G 
Sbjct: 1125 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDMAMKELPDLIICDVMMPIKDGF 1183

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  +++KE  E   IP I +TA     D     + G + Y+ KP +  I    +   I
Sbjct: 1184 ECCREVKECPETCSIPFIMLTAKVEDDDIIHGLELGADDYVLKPFTPGILKAKVSNLI 1241


>gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110]
 gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110]
          Length = 223

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +    ++   GY      NG +  ELA Q+  D++I+D  L    GL 
Sbjct: 2   KILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNYDLLILDWMLPGKPGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S+ Q  PV+ +TA     D       G + Y+ KP  L   M  ++  +  
Sbjct: 62  ICQELR--SQGQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRR 118


>gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8]
 gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8]
          Length = 225

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+   +++    +  +G+  L+  +G +ALEL  Q   D++I+D+ L ++ GLE
Sbjct: 2   KVLLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALELFPQA--DLVILDLMLPKVGGLE 59

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I++  E  E+P++ +TA   + D     + G + Y+ KP S    +  +K  +  A
Sbjct: 60  VARLIRQ--ERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRRA 117


>gi|16803100|ref|NP_464585.1| hypothetical protein lmo1060 [Listeria monocytogenes EGD-e]
 gi|47096149|ref|ZP_00233749.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes str. 1/2a F6854]
 gi|224500297|ref|ZP_03668646.1| hypothetical protein LmonF1_11754 [Listeria monocytogenes Finland
           1988]
 gi|224502626|ref|ZP_03670933.1| hypothetical protein LmonFR_08914 [Listeria monocytogenes FSL
           R2-561]
 gi|254828437|ref|ZP_05233124.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL N3-165]
 gi|254830171|ref|ZP_05234826.1| hypothetical protein Lmon1_02380 [Listeria monocytogenes 10403S]
 gi|254898767|ref|ZP_05258691.1| hypothetical protein LmonJ_03090 [Listeria monocytogenes J0161]
 gi|254911744|ref|ZP_05261756.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes J2818]
 gi|254936070|ref|ZP_05267767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes F6900]
 gi|284801392|ref|YP_003413257.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
 gi|284994534|ref|YP_003416302.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
 gi|16410462|emb|CAC99138.1| lmo1060 [Listeria monocytogenes EGD-e]
 gi|47015498|gb|EAL06431.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes str. 1/2a F6854]
 gi|258600833|gb|EEW14158.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL N3-165]
 gi|258608660|gb|EEW21268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes F6900]
 gi|284056954|gb|ADB67895.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
 gi|284060001|gb|ADB70940.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
 gi|293589695|gb|EFF98029.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes J2818]
          Length = 220

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I ED+   + +    +  +GY  +  +NG+EA  L ++   D+IIMDI +  + G
Sbjct: 1   MEKILIAEDDSAILGVITAFLTEAGYQVMTAKNGIEAYHLFQKETFDLIIMDIMMPSMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +T+ I+        P++ +TA + + DE +    G + YI KP S  + ++ ++  + 
Sbjct: 61  YTLTELIRS---TSTTPILMMTALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQVLLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|314950224|ref|ZP_07853508.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|313643451|gb|EFS08031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 239

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+     L+R ++E +G+  +   NG +AL+     + ++II DI + ++ G
Sbjct: 18  MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 77

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  S   + PV+ +TA A   D++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 78  YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 135

Query: 122 EA 123
            +
Sbjct: 136 RS 137


>gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +    L    +   GY  L+  +G+EAL+++  ++ D++I+DI + ++ G+E+
Sbjct: 6   VLVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQISNDNEVDLVILDIMMPKMDGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++    + +P+I ++A +   D+      G + Y+ KP +    +  +K  +  
Sbjct: 66  CMRMRKS---KNMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRR 120


>gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I+ED     +L RD  E +G+       G E L+LA      +II+D+QL  ++
Sbjct: 1   MATRILIIEDETTIAQLERDYFELNGFAVDLCHTGDEGLKLALNEDYSLIIVDLQLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+   I+++   +E+P++ V+A   + D+ R    G + YI+KP S S  +   K ++
Sbjct: 61  GYELCSHIRKN---KEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHL 117


>gi|170077968|ref|YP_001734606.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885637|gb|ACA99350.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 372

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+  N+ L + ++E      +   NG +ALEL  Q    +I++D+ +  + G E
Sbjct: 9   RVLVVDDSPDNLLLIQSILEDEDLDLVTVNNGQKALELVAQQPFHLILLDVMMPHMDGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           IT+ I+ D ++  IP++ +TA A           G + +I KP+ +   +  ++  + 
Sbjct: 69  ITRHIRNDPDIPYIPILLITAHAQPS-VALGLDIGADDFIRKPVEIDELIARVRSLLR 125


>gi|148284174|ref|YP_001248264.1| response regulator PleD [Orientia tsutsugamushi str. Boryong]
 gi|146739613|emb|CAM79396.1| PleD-like response regulator, receivor domain/GGDEF domain
           [Orientia tsutsugamushi str. Boryong]
          Length = 489

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D E N KL    + T  Y      NG EA+++    K DV+++DI +  + 
Sbjct: 1   MTAAILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEAIKIDVVLLDIVMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K IK + +   IPVI +TA +   D+ +  + G + +++KPI        +K  +
Sbjct: 61  GFELCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 54/140 (38%), Gaps = 23/140 (16%)

Query: 4   KVMIVEDNEL----NMKLFRDLIET-SGYIALQTRNGMEAL-----ELARQHKPDVIIMD 53
            ++I++D+ +      ++   L +    +  +   +    L     ++A    PD++I++
Sbjct: 168 TILIIDDDAIWFNRISEIITCLTKKVELFECINYTDNKNKLLTDLEKIATSLVPDLLIIN 227

Query: 54  IQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK----GDE-----ERIRKGGCEAYIS 104
            Q+     L +   ++   EL++   I +T  +++     D       +  + G   +  
Sbjct: 228 NQIILEDPLRVYAILRSKDELKQSAFILLTEDSLENRDHDDISTDKLLKGLEMGINDFF- 286

Query: 105 KPISLS--IFMETIKKYIGE 122
            P S+     +  IK  +  
Sbjct: 287 -PYSIDNNELLARIKTQLRR 305


>gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +         ++  G   L+ ++G+EALE+  +++  +II+D+ + ++ G+  
Sbjct: 6   VLVVDDEKEIRDAIEIYLKNEGITVLKAKDGIEALEILNENQVHLIILDVMMPKLDGISA 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E    + IP+I ++A     D+    + G + Y++KP +    +  +K  +  
Sbjct: 66  TYKIREK---KNIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120


>gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
 gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
          Length = 231

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALE+ ++   D+II DI +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++    +  + P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|301062173|ref|ZP_07202858.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300443726|gb|EFK07806.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 175

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 72/120 (60%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DN + +KL R L+E+  Y+ +  +NG+EAL+LA    PD+++ D  + E+ G+ 
Sbjct: 55  KILVVDDNLVVLKLLRHLLESQDYLVITAQNGVEALKLASTEDPDMVVTDYVMPEMDGVA 114

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K++K   E + IP++ +TA   +  E      G + Y++KPI+   F+  + + +  +
Sbjct: 115 LIKELKRRKETRNIPIMMLTAKDEEESELEGLDAGADDYLTKPIARKRFLARVARLLKRS 174


>gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1705

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
              V++VEDNELN +L  +L+ ++G       NG EALE    + + D ++MD Q+  + G
Sbjct: 1366 AHVLLVEDNELNQELALELLVSNGLSVEIAANGREALERLAGESRFDGVLMDCQMPVMDG 1425

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T+ I+E  EL  +PVIA+TA  M GD E+    G   +I KPI++     T+ K+I 
Sbjct: 1426 YTATRAIREQPELAGLPVIAMTANVMSGDREKALAAGMNDHIGKPINVREMFATLAKWIR 1485

Query: 122  EA 123
             A
Sbjct: 1486 PA 1487



 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA----RQHKPDVIIMDIQLQEI 59
            ++++V+DN    ++   ++   G+      +G EAL+      R    D+++MD ++ E+
Sbjct: 1218 RILVVDDNATAREILTQMLLAFGFAVESAASGREALDRLRVVDRLEPFDLVLMDWKMPEM 1277

Query: 60   SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G+E  +++   +E+ + P +I VTA+  +   +   + G   +++KP++ S  ++ I  
Sbjct: 1278 DGIETIRRLCAQTEITQAPALIMVTAYGHEAAHQVAVELGVSGFLTKPVTSSNLLDAIMH 1337

Query: 119  YIGE 122
             +G 
Sbjct: 1338 AVGR 1341


>gi|239817207|ref|YP_002946117.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803784|gb|ACS20851.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 356

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ SGY  L   +G +AL+ A Q +PD++++D  +  I G E+
Sbjct: 20  VLIVDDVPDNLAVLHDALDESGYTVLIATSGEQALQRAAQARPDIVLLDAMMPGIDGFEV 79

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121
            +++K D+    IP++ +T            + G   Y++KPI     +  +  ++    
Sbjct: 80  ARRLKADAATAHIPIVFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVLARMNVHLQGAR 139

Query: 122 EA 123
            A
Sbjct: 140 RA 141


>gi|212691672|ref|ZP_03299800.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855]
 gi|265753202|ref|ZP_06088771.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|212665861|gb|EEB26433.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855]
 gi|263236388|gb|EEZ21883.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1386

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   L+    Y  L+  NG EALE+  + + D+I+ D+ + E+ G+E
Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++K   E   IP+I +TA     D     + G + YI KP+ LS+    I   +  
Sbjct: 1195 LCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253


>gi|209520046|ref|ZP_03268823.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499531|gb|EDZ99609.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 247

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D+ +   L  + +   G+      NG+      ++ +P ++++DI + E+ 
Sbjct: 1   MNQTILIVDDDPVVRDLVSEYLHGRGFQVATLENGLALQRRLQRERPALVVLDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++      +IPVI +TA A   D     + G + Y+ KP   S  +  I+  +
Sbjct: 61  GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis
           raciborskii T3]
          Length = 272

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56
           +V+IVED EL  ++    +E  GY  +  ++G  A+EL R       +   D++++D+ L
Sbjct: 42  RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I+GL+I + ++       IP++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 102 PQINGLDICRLLRHQGN--SIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARC 159

Query: 117 KKYIGE 122
           +  +  
Sbjct: 160 RALLRR 165


>gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 238

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 14  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 73

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 74  LEVARRLRAEGHT--VPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 131

Query: 122 E 122
            
Sbjct: 132 R 132


>gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 234

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   + K D++I+DI +  + G ++
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 74  CLELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128


>gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 233

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L +  +++  ++++DI + +I G+ 
Sbjct: 5   TILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +I+E    +E+P+I ++A     D+      G + Y++KP +    M  IK  +  
Sbjct: 65  MCMKIRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRR 120


>gi|253701540|ref|YP_003022729.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776390|gb|ACT18971.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 234

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +     +E  GY+     +G EALE  +  K D+II+D+ L  I G E+
Sbjct: 8   ILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVKVEKFDLIILDVMLPGIGGFEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+       +PV+ +TA + + D       G + Y+ KP +L  F+  +   +  +
Sbjct: 68  CERIRALD--SRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRS 124


>gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
 gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
          Length = 260

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L R  +  +G+      N  +   L  + + D +++D+ +    G+ 
Sbjct: 21  RILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVMMPGEDGIS 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+I+  ++    P++ +TA     D     + G + Y+ KP +    +  +   +  
Sbjct: 81  ILKRIRASNDT--TPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRR 137


>gi|311068829|ref|YP_003973752.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869346|gb|ADP32821.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L +  +E   Y   +  NG EA+    +   D+I++D+ +    G+E
Sbjct: 8   KILVVDDEARIRRLLKMYLEREEYEIEEAENGDEAIVKGLETDYDLILLDLMMPGTDGIE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QI+E    +  P+I +TA   + +  +  + G + YI KP S    +  +K  +  A
Sbjct: 68  VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124


>gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
 gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
          Length = 232

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+   ++L    ++  GY  ++  +G+EA+ +   +   ++++D+ +  + G+E+
Sbjct: 6   ILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVMMPTMDGVEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      IPV+ ++A +   D+      G + YI+KP S+   +  +K  +  
Sbjct: 66  CRRIREKF---NIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQLRR 120


>gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157


>gi|71066368|ref|YP_265095.1| putative hybrid two-component sensor and regulatory protein
            [Psychrobacter arcticus 273-4]
 gi|71039353|gb|AAZ19661.1| putative hybrid two-component sensor and regulatory protein
            [Psychrobacter arcticus 273-4]
          Length = 2284

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 68/119 (57%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+D+    K+    +E  G+  +  ++G++ALE+ ++  PD++++DI++  + G E
Sbjct: 2160 TILVVDDSVTVRKVTSRFLERHGFNVVLAKDGIDALEILQEMTPDLMLLDIEMPRMDGFE 2219

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  Q++ +  LQ +P+I +T+   +   ER  K G   YI KP   +  ++ I+  + E
Sbjct: 2220 VATQVRLNGCLQHLPIIMITSRTGERHRERALKIGVNDYIGKPFQENQLLDKIQSLLDE 2278


>gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 223

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|313115296|ref|ZP_07800772.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622380|gb|EFQ05859.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 231

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++V+D+   +++   +   +GY       +G EAL + ++ +P +I++D+ + ++ G 
Sbjct: 5   KILLVDDDRDVLEMLLSIFRRAGYTNLRTAASGAEALRIWQEEQPSLIVLDVMMPDMDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+       +PV+ +TA     D     + G + Y++KP      +  +   +  
Sbjct: 65  SVLKKIR---RTSRVPVLMLTARGEAEDRIEGLEIGADDYLAKPFLPKELLLRVGAILSR 121

Query: 123 A 123
           A
Sbjct: 122 A 122


>gi|307324561|ref|ZP_07603768.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306889805|gb|EFN20784.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 257

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED+E+  +     +E  GY      +G+  L L R    D++++D+ L  + G+ 
Sbjct: 15  TVLLVEDDEVIRRSVGMALERYGYRVSTAGDGLTGLALFRAGGHDLLLLDVMLPGLDGIG 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E S     P++ ++A     D     + G + Y+ KP+  ++ +  I+  +  A
Sbjct: 75  LCRRIRETSMD---PILMMSARGDDLDVISGLEAGADDYVVKPVDTAVLVARIRSLLRRA 131


>gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 229

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+    +L    +E   +      +G    ++  +++PD+I++D+ L   +
Sbjct: 1   MKQKILVVDDDSNICELLVVYLE-EDFQVKTVFDGNNLEQVISEYRPDLILLDVMLPGKN 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+   +  EIP+I ++A   + D+    + G + YI+KP S    +  +K  +
Sbjct: 60  GFDICREIR---DKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
 gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
 gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED+    +L RD +E S +      +G + +E A     D++I+D+ L  I G
Sbjct: 1   MKKILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGGFDLVILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++E+    +IPVI V+A     D+ R    G + Y++KP S S  +  +K +I 
Sbjct: 61  FNVCRRLREEL---DIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254413786|ref|ZP_05027555.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179383|gb|EDX74378.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1038

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ EDN +N  L   L++  GY A    +G+EALE   +   D++ MD+Q+  + GL
Sbjct: 792 RRILVAEDNLVNQLLAVRLLQRMGYRADVVSDGLEALEALHRQPYDMVFMDVQMPHMDGL 851

Query: 63  EITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           E T++I +       P +IA+TA AM+ D +   K G + YISKPI +   +  + +
Sbjct: 852 EATQRICQTWNAATRPRIIAMTANAMESDRQECLKAGMDDYISKPIRVEELVRVLNQ 908



 Score =  104 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           K+++IV+DN  N        E    +     +  EA+ L  Q    D+ I+D+Q+ ++ G
Sbjct: 647 KRLLIVDDNATNRDFLSRQAEAWSMVTDTASSAAEAIALIEQEPSFDLAILDMQMPQVDG 706

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           L +   +++  + Q++P+I +T+  +   E    +    A+++KPI  S     +
Sbjct: 707 LSLAATLRQRPDCQQLPLIMLTSIGIPEKELNAAQVDFAAFLNKPIKQSQLYSVL 761


>gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 235

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 69/125 (55%), Gaps = 7/125 (5%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQLQ 57
           +K+V+I++D++    L +  IE     A+   +G+E L++ ++++      +II+D+ + 
Sbjct: 1   MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G ++ K+I+E   +  IPV+ +TA + + D+    + G + Y++KP S++     + 
Sbjct: 61  YMDGFQVLKKIRE---VSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVH 117

Query: 118 KYIGE 122
             I  
Sbjct: 118 SLIRR 122


>gi|327462011|gb|EGF08340.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|332362240|gb|EGJ40040.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 234

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMIHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|218440687|ref|YP_002379016.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
 gi|218173415|gb|ACK72148.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
          Length = 124

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D E  +      +   GY      +G+ AL++ +++ PD++I+D+ L E+ G
Sbjct: 1   MYHILLIDDEEPLLASLSFYLIKEGYKVTTAADGLTALKVIQENMPDILILDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+  +I+      ++P++ +TA   + D+    K G + Y++KP S    +  I+  + 
Sbjct: 61  IELFWRIRA---FSDVPILMLTAKDHEADKVWGLKSGADDYVTKPFSTRELIARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED E   K     ++  GY      +G   L+ A  +  DVI++D+ L E++G
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E    ++ P+I +TA     D       G + Y+ KP ++   +  I+  + 
Sbjct: 61  LEVARRLRES---KKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 226

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+++V+D E   KL +D +   GY  L+  +G +A+++  ++    ++I+D+ + ++ G 
Sbjct: 5   KILMVDDEERMRKLVKDFLTIKGYRVLEAGDGEQAIDIFFKEKDISLVILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  K I+      ++P+I +TA + + DE    + G + YI+KP S  I +  I+  +  
Sbjct: 65  ETCKTIR---RYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRR 121


>gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 233

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + +    ++  GY   +  +G EAL+    +KP ++++D+ L  I+
Sbjct: 1   MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K++    E + I +I +TA     D+    + G + Y++KP  +   +  IK  I
Sbjct: 61  GYDVCKRL----EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLI 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|284040445|ref|YP_003390375.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819738|gb|ADB41576.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 235

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+   +++    +   GY      +G +ALE+AR + P+++++DI +  + G+E
Sbjct: 12  RVLVVDDDADILEMLEYNLSKEGYDVRTATDGRKALEVARTYMPELVLLDIMMPHLDGIE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +Q+++  EL++  ++ +TA + +  E      G + YI+KPI     M  I      
Sbjct: 72  AGRQLRDIPELRQTYILYLTARSEEYSEVAAFDVGADDYITKPIKPRALMSRINALFRR 130


>gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 229

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++ +D      + R  +E +GY  ++  +G +AL++      DV ++DI + E+ 
Sbjct: 1   MPYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K+++E     ++PVI V+A     ++      G + Y+ KP +    +  +   I
Sbjct: 61  GYQVLKRLRE---TSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
 gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|212633456|ref|YP_002309981.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1203

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 73/118 (61%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN +N ++  +L++++GY      NG  AL++      D ++MDIQ+  + GL  
Sbjct: 1081 ILLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMIDSANYDAVLMDIQMPVMDGLTA 1140

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            TK++++     E+PVIA+TA AM GD E+    G  A+I+KPI L+   ET+  +I E
Sbjct: 1141 TKELRKRYSATELPVIAMTAHAMSGDREKSLSAGMNAHITKPIVLNELFETLSHWIEE 1198



 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K ++++DN   ++++  ++    +      +G E L    ++  D++++D  + E+ G+ 
Sbjct: 937  KTLVIDDNPTALQIYSSVMRDFHFSVDTAASGPEGLYKLSKNPVDLLLLDWMMPEMDGIA 996

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + ++I       +L + P +I +TA+A +   + I      A + KP   S   + I
Sbjct: 997  VIEEIDDMVASGKLAKRPVIIMMTAYAAEPMHKDIAGSNVFALLQKPFKASSLFDEI 1053


>gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 226

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D    ++  R  +   G+       G  AL  A + +P+V+++D+ L ++ G
Sbjct: 1   MTRVLVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAERQPEVVVLDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++       +PVI ++A     ++      G + Y++KP  +   +  ++  + 
Sbjct: 61  FEVLAGLR---GWTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 245

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L    +   G+      +G EA+ + R+ +PD +++D+ L ++ GL 
Sbjct: 21  RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVMLPDMDGLT 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   EL +IPV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 81  VLGRLRR--ELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRS 138


>gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 226

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 2198

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK +IV+D+  N+     ++E      L   NG E + +       DV++MD+ + E+ G
Sbjct: 2078 KKALIVDDDVRNIFALTSMLERYQIQVLYAENGREGINVLENTPDIDVVLMDVMMPEMDG 2137

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T  I+++ + + +P+IA+TA AM+GD E+  + G   YI+KP+     +  ++ ++
Sbjct: 2138 YETTSLIRQNEQFKSLPIIALTAKAMQGDREKCIEAGASDYITKPVDTEQLLSLLRVWL 2196



 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 4/117 (3%)

Query: 1    MLKKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
            M  +V+ IVED+    ++  D+ +  G+  +  +NG   L LA+Q  P  +++DI++ E+
Sbjct: 1807 MGDRVLLIVEDDVNFARILIDMAQQHGFKVITAQNGSTGLALAQQFYPSAVLLDIRMPEM 1866

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             G  +  ++K D   + IPV  +T   ++  ++R  + G  AY+ KP+S  I  E +
Sbjct: 1867 DGWTVLDRLKHDPNTRHIPVHIMT---VEEGQQRSLQLGAIAYLQKPLSSEIISEAL 1920



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++VED++       +LI  S         G EALE  R    D +++D+ L +++G 
Sbjct: 1932 KNLLVVEDDDTQRHSIVELIGNSDVHTTAVATGAEALEAIRTKHFDCLVLDLGLPDMTGF 1991

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ +QIK     + +P+I  T   +   +E   +   E  I K + S    ++
Sbjct: 1992 ELIEQIKLLPHGKTLPIIVYTGRDISKAQETELRRIAETIIIKDVRSPERLLD 2044


>gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1]
 gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1]
 gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +M+V+D +   +L    ++  GY  LQ  +G E LEL ++++  +I++DI + +I
Sbjct: 1   MSKETIMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEVHLIVLDIMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+ +  +++E   + E+P+I ++A     D+      G + Y++KP +    +  IK  
Sbjct: 61  DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L]
 gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4]
 gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7]
 gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 241

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    +I++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQQGST--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|332652704|ref|ZP_08418449.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
 gi|332517850|gb|EGJ47453.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
          Length = 238

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++MIV+D      L    ++  GY   +     +ALE   Q + D+ I+D+ L ++ 
Sbjct: 7   MSAEIMIVDDEAAIADLVDVYLKNEGYTVHKFYTATQALECVEQKRLDLAILDVMLPDMD 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+E       P++ +TA     D+      G + YI+KP +    +  +K  +
Sbjct: 67  GFTLCQKIRESHLF---PILMLTAKVEDMDKITGLTLGADDYITKPFNPLELVARVKTQL 123

Query: 121 GE 122
             
Sbjct: 124 RR 125


>gi|327543489|gb|EGF29908.1| two-component system response regulator [Rhodopirellula baltica
           WH47]
          Length = 239

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I ED+        +L+   GY      +G+ A ++      D++ +D+ +   SG
Sbjct: 1   MTRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKNFDLVCLDVMMPMKSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + ++ +      PVI +TA   + D+    + G + YISKP      +  +K  + 
Sbjct: 61  FDVCRLLRAEDH--RTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|325281460|ref|YP_004254002.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
 gi|324313269|gb|ADY33822.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
          Length = 229

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED+     L ++ +   G+  +   +G  A E       D+ I+D+ + +  G  
Sbjct: 6   KILLAEDDTNLGMLLKEYLRAKGFETVLCEDGEVAYEAFLNQPFDICILDVMMPKKDGFT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+I++ +   EIP+I +TA  MK D     K G + Y+SKP S+   +  I+  +  +
Sbjct: 66  LAKEIRQIN--SEIPIIFLTAKNMKEDVLEGFKLGADDYMSKPFSMEELLLRIEAVLRRS 123


>gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+E       + ++   Y+     +G +  +  +    D+II+D+ L ++SG  
Sbjct: 2   RILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWDFIQSFSYDLIILDVMLPKLSGTA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++++   +   PV+ +TA     D+ +    G + Y+ KP  L      I+  +  +
Sbjct: 62  LCQRLRDTGYM--TPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRS 119


>gi|224538526|ref|ZP_03679065.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519864|gb|EEF88969.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1370

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VED+E   K     + +  +   +  NG EAL +  + +PD+II DI + E+ GL 
Sbjct: 1106 RVLVVEDDEEIRKYICRELASD-FHMSECTNGKEALAMILKKEPDLIISDIMMPEMDGLT 1164

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            + K+IK++  +  IP+I +TA + + D       G +AYI KP S+ I  +T
Sbjct: 1165 LCKKIKQNVTINHIPIILLTAKSREEDNLEGLNMGADAYIVKPFSIEILRKT 1216


>gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 1991

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 55/117 (47%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++V+DN         L+           NG +ALE  R   PD+++ D+ +  + G  
Sbjct: 1620 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQPPDLVLADVMMPGLDGFG 1679

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + ++ D + + IP+I ++A A         + G + Y+ KP S    +  ++ ++
Sbjct: 1680 LVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHL 1736



 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN         L+    +       G  AL  AR + P +II D+ +  ++GL
Sbjct: 604 ARILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANPPSLIISDVMMPGVNGL 662

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ + ++ D+  + IP++ ++A A +    +    G + Y+ KP S    +  +   +
Sbjct: 663 ELVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALL 720


>gi|109898155|ref|YP_661410.1| two component AraC family transcriptional regulator
            [Pseudoalteromonas atlantica T6c]
 gi|109700436|gb|ABG40356.1| two component transcriptional regulator, AraC family
            [Pseudoalteromonas atlantica T6c]
          Length = 1341

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++++DN    +     +    Y   Q  NG E L  A    PDVII D+ + ++ GL 
Sbjct: 1098 TVLVIDDNAELRQFIALRLSGY-YRITQAENGEEGLAKAISVLPDVIICDVMMPKMDGLT 1156

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   ++ +   + IP+I ++A + K D     + G + Y++KP   S  +  +   + 
Sbjct: 1157 LMHHLRGNQHTRSIPIILLSAKSAKRDTVEGLQRGADDYLTKPFDTSELVARVDAQLR 1214


>gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330468337|ref|YP_004406080.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328811308|gb|AEB45480.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D    ++     +   GY       G +AL+ A +H PD++++D+ L ++ G
Sbjct: 1   MNRILVVDDEPQILRALGINLRARGYDVQVAATGTDALKAAARHPPDLVVLDLGLPDLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + ++       +P+I ++  A   D+      G + Y++KP  +   +  I+    
Sbjct: 61  VEVIRGLR---GWTGVPIIVLSGRAGSDDKVTALDAGADDYVTKPFGVDELLARIRAVTR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098]
          Length = 226

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1831

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G
Sbjct: 1710 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1769

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++ 
Sbjct: 1770 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1829


>gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +M+V+D +   +L    ++  GY  LQ  NG E LEL ++++  +I++DI + +I
Sbjct: 1   MSKETIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+ +  +++E   + E+P+I ++A     D+      G + Y++KP +    +  IK  
Sbjct: 61  DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061]
 gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++VED +   ++    +E  GY       GM+ L+   +   D++++D+ L E+
Sbjct: 1   MNKGKILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVMLPEL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGLE+ +++++ +     P+I +TA     D+      G   YI+KP  +   +  I+  
Sbjct: 61  SGLEVLRRVRKTNTA--TPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQ 118

Query: 120 IG 121
           + 
Sbjct: 119 LR 120


>gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 241

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+I++D+E    L  + +   G+      +  + L   +   PD++I+D+ L +  GL 
Sbjct: 17  RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ DS    IP+I +TA     D     + G + Y+ KP      +  I+  +  
Sbjct: 77  VCREVRADSR---IPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR 132


>gi|90021568|ref|YP_527395.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951168|gb|ABD81183.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 569

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59
             K+++V+DN +N ++   ++E   +      NG +AL    +     D+I+MD Q+  +
Sbjct: 295 SPKILLVDDNAVNREVILGILEDEDFQIETAVNGQDALAALTRSSLNFDLILMDCQMPVM 354

Query: 60  SGLEITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            G + T++I+        + IP+IA+TA AM GD+E     G   Y+SKPI     +  I
Sbjct: 355 DGYKATREIRSSEILKHYKHIPIIALTANAMAGDKETCLASGMSDYLSKPIDGEQLLLII 414

Query: 117 KKYI 120
            K+I
Sbjct: 415 SKWI 418


>gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3]
 gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 241

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    +I++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQQGST--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|117620336|ref|YP_857562.1| two-component hybrid sensor and regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561743|gb|ABK38691.1| two-component hybrid sensor and regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 376

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 65/120 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D   N  + R L+E +GY   +  +G++A++ A +  PD+++MDI +  + G
Sbjct: 1   MSEILIVDDMASNRYILRSLLEEAGYRVREATDGLQAVDTATEFPPDLVLMDINMPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++IK+      +PV+ ++  +  G  E+  + G   Y+SKP      +  ++  + 
Sbjct: 61  YEACRRIKQLPGQWCLPVLFISTNSGIGALEQAFQAGGCDYVSKPFHQLEVLARVQNQLR 120


>gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)]
          Length = 225

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED+E         +   G+      +G + L+L R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA     D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|125974330|ref|YP_001038240.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|256003450|ref|ZP_05428440.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|125714555|gb|ABN53047.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|255992474|gb|EEU02566.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|316941477|gb|ADU75511.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 1313]
          Length = 363

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   ++ +   ++  S +      +G  AL+L  Q KPD+I++DI + E+ G E+
Sbjct: 12  ILIVDDIPEHIDVAVQVLRDSNFKIRVATDGNTALKLIYQQKPDLILLDIYMPEMDGFEL 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + IK   +L+ IPVI +T+F+ +    +  + G + Y+ KP + S  +  +K ++
Sbjct: 72  CRLIKNTPDLKNIPVIFLTSFSDEESIRKGFESGGQDYVVKPFNASELLSRVKTHL 127


>gi|291448820|ref|ZP_06588210.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
 gi|291351767|gb|EFE78671.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
          Length = 228

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED         D +   GY      +G+ AL      +PD +++D+ +  + GL 
Sbjct: 6   RILVAEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVLDVMMPALDGLA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   +    PV+ +TA +   +     + G + Y+ KP +L   +  ++  +  A
Sbjct: 66  VCRRLRAMED--RTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRA 123


>gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 231

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +  +      +  +GY      NG  AL ++R    D+ ++DI +  ++G E
Sbjct: 7   TILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++  +     PV+ ++A   + D+    + G + Y++KP  +   +  ++  +  
Sbjct: 67  LCRNLRTRT---NAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR 122


>gi|237725777|ref|ZP_04556258.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435585|gb|EEO45662.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1386

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   L+    Y  L+  NG EALE+  + + D+I+ D+ + E+ G+E
Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++K   E   IP+I +TA     D     + G + YI KP+ LS+    I   +  
Sbjct: 1195 LCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253


>gi|255691123|ref|ZP_05414798.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260623476|gb|EEX46347.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1523

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+      R +   S Y  ++  +GME    A ++ PD+II D+ + E  G+E+T
Sbjct: 1240 LLVEDNQELRVFLRSIF-ASNYRVVEAADGMEGWSKALKYVPDIIISDVMMPEKDGIEMT 1298

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  + +
Sbjct: 1299 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLSQ 1355


>gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 222

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L +D ++  GY      +G +ALE  R   PD+I++D+ L  + GL +
Sbjct: 6   ILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAEAPDLILLDLMLPGLDGLSV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++ +      + P+I VTA   + D     + G + Y+ KP S    +  +K  +  
Sbjct: 66  CREAR---RFTDAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRR 120


>gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
 gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
          Length = 1324

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 72/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VEDNE+N ++   L++ +G   +   NG EAL+   +   D+++MD+Q+  + G+
Sbjct: 992  QTLLLVEDNEVNQEVALGLLQETGLSVIVANNGQEALQRLAEKSFDLVLMDMQMPVMDGI 1051

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              TK+I+ D   + +P++A+TA AM  D E   + G   ++SKPI +  F   +K+++
Sbjct: 1052 TATKKIRADERWKTLPIVAMTANAMATDIEHCTQAGMNDHLSKPIDVDKFYHVLKQFL 1109



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 55/114 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E+  ++K     ++     VTA+      +       ++ I KP++ S  ++ I
Sbjct: 912 ELLTRVKSLGLREQTKCFLVTAYGRDIHLDSENSKLVDSLIVKPVNPSNLLDAI 965


>gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K++IV+D+    +L    +E  G+   +  +G++AL    + + ++ I+DI +  + 
Sbjct: 1   MIPKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVRVEMAIIDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +
Sbjct: 61  GFDLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 224

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++V+D      L R  +E  GY  L   +G EA+E   +  PDV+I+D+ L +  
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEG-PDVLILDVMLPDTD 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K   
Sbjct: 59  GYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G  ALE   +   D++++D+ L  +SG
Sbjct: 1   MTRVLVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGADLVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +++ S    +PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRTLRQKS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1]
 gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1]
 gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|73666930|ref|YP_302946.1| response regulator PleD [Ehrlichia canis str. Jake]
 gi|72394071|gb|AAZ68348.1| response regulator receiver modulated diguanylate cyclase
           [Ehrlichia canis str. Jake]
          Length = 458

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IV+D   N+KL +  + +  Y  L   NGM+A+++A +  PD+I++D+ + E+ 
Sbjct: 1   MTAKVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEEKHPDIILLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  K++K +     IP++ VTA     D        G + +++KPI+ +     I+  
Sbjct: 61  GYETCKRLKSNPATTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPINDTALFARIRSL 120

Query: 120 IG 121
             
Sbjct: 121 TR 122



 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+++ +  +   ++++ S    + + +  +AL L+     D+II D++     GL +
Sbjct: 159 ILIVDEDVIRSEHINNILQKSFQQTVVSHDIDQALNLSNIQNYDLIITDLEFSG-DGLRL 217

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGD---EERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             Q++   E +  P++ +       D     +    G   YI+ P+  +  +  +   + 
Sbjct: 218 CSQLRNKIETRYTPILVL--LDENEDPKLLSKAFDIGIHDYITTPVDSNELIARVNVQVK 275

Query: 122 E 122
            
Sbjct: 276 R 276


>gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 226

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IVED    +   +  +ET G+  +   +G   L    +   D+II+DI L ++S
Sbjct: 1   MKPRVLIVEDEPAIVDNIQYALETEGFATVCLVSGEPVLTFLARDTVDLIILDIGLPDMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I++       PVI +TA   + D     + G + Y++KP S       ++  +
Sbjct: 61  GMELCKEIRKS---HSTPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
 gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
          Length = 243

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +    +   +++   Y      +G EAL+       D +I+DI L +  G E
Sbjct: 18  RILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFSVDYDAVILDIMLPKKDGFE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+I+E +   + PV+ +TA     D  +    G + Y+ KP +    +  ++  + ++
Sbjct: 78  VLKKIREKNI--KTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKS 135


>gi|302877367|ref|YP_003845931.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302580156|gb|ADL54167.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 632

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 60/116 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L++ L+E SG+      NG EALE  +   P +II D  + E+ G+E
Sbjct: 322 RILLVDDDRAIRLLYKTLLEKSGHTVTTACNGREALESLQASVPQLIISDWMMPEMDGIE 381

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             ++++++ E  +I V  VTA           + G   Y+SKPI+  +    ++  
Sbjct: 382 FCRELRKNPEWHKIYVFIVTAQESTDRLIEAFEAGANDYLSKPINPKVLAARLRSA 437


>gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 219

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED +   +     +   GY      +G   LE A  +  D+II+D+ L  I+G
Sbjct: 1   MTNILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLMLPNING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +++++   +Q  P+I +TA +   D+      G + YI KP  +      I+  + 
Sbjct: 61  LEICRRVRQ---VQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|83721603|ref|YP_441449.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           E264]
 gi|83655428|gb|ABC39491.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           E264]
          Length = 259

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 19  MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 78

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +   +  +
Sbjct: 79  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 136

Query: 121 GE 122
             
Sbjct: 137 RR 138


>gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1917

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            KKV+IV+D+  N+     ++E      +   NG E + L       DV++MD+ + E+ G
Sbjct: 1797 KKVLIVDDDVRNIFALTSMLERYQMQVIYAENGREGISLLENTQDIDVVLMDVMMPEMDG 1856

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  + I++  + + +P+IA+TA AM+GD ++    G   YI+KP+     +  ++ ++
Sbjct: 1857 YETMQLIRKKEQFRALPIIALTAKAMQGDRDQCIAAGASDYIAKPVDTEQLLSLLRVWL 1915



 Score =  112 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+    ++  D+    G+  L  + G   L+LA+  +P  I++DI+L E+ G  + 
Sbjct: 1532 LIIEDDVNFARILVDMARQHGFQVLSAQTGTAGLKLAKDFQPMAILLDIRLPEMDGWTVL 1591

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             ++K D   + IPV  +T   ++   +R  + G  AY+ KP++     E + K 
Sbjct: 1592 DRLKHDPTTRHIPVHIMT---VEEGRQRGLQLGAIAYLQKPVTSEAISEALDKI 1642



 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++VED+EL  +   +LI  S    +    G  ALE  R  + D +++D+ L +++G 
Sbjct: 1651 KNLLVVEDDELQRQSIVELIGNSDVATVAVGTGAAALEAIRTQQFDCLVLDLGLPDMTGF 1710

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ +QIK ++    +P+I  T   +   +E   +   E  I K + S    ++
Sbjct: 1711 ELMEQIKREANGATLPIIVYTGREISKTQETELRRIAETIIVKDVRSPERLLD 1763


>gi|300867480|ref|ZP_07112131.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300334474|emb|CBN57299.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 378

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   GY   +  NG  AL   ++  P +I++D+ + +++G E+
Sbjct: 13  ILVVDDTPDNVRLLSTILTEEGYQVRKALNGQRALTTIQEFPPALILLDVMMPDMNGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++K+  +   IPVI ++A     D+ +  + G   YI+KP      +  +   +
Sbjct: 73  CKKLKDSPQTSSIPVIFLSALDHVLDKVKAFEVGGVDYITKPFQEREVLVRVANQL 128


>gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 224

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +  +   +  +E   Y  L   +G E L++A     D+II+D  L +  GL 
Sbjct: 2   RILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWMLPKQDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++        PV+ +TA     D       G + Y++KP + +  +  ++  +  +
Sbjct: 62  VLKELRNQKNA--TPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRS 119


>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
            OS217]
 gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217]
          Length = 1233

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 75/116 (64%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN +N ++  +L++++GY  +   NG  AL+L  + + D ++MDIQ+  + GL  
Sbjct: 1112 ILLVEDNFINQQVASELLKSAGYDVVIADNGQIALDLVAKQEFDAVLMDIQMPVMDGLTA 1171

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K ++E    Q++P+IA+TA AM GD+E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1172 AKILRETYSTQQLPIIAMTAHAMSGDKEKSLNAGMNAHITKPIVLTELFETLAYWI 1227



 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 14/120 (11%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG---L 62
            ++V+DN   ++++  L+    +       G EA+E   Q   D++++D  +  +SG   +
Sbjct: 970  LVVDDNPSALQIYSTLLRDFSFGVNTATGGAEAIERLLQQDIDLLLLDWMMPVVSGGMVI 1029

Query: 63   EITKQIKEDSELQEIP-VIAVTAFAMKG-----DEERIRKGGCEAYISKPISLSIFMETI 116
            +   ++  D  L++ P +I +TA++ +      D+   +       + KP   S   + I
Sbjct: 1030 KAVDEMIADGRLKKRPVIIIMTAYSTEPLNLELDKYEYQAV-----LQKPFKASSLFDEI 1084


>gi|15965046|ref|NP_385399.1| putative 2-component receiver domain protein [Sinorhizobium
           meliloti 1021]
 gi|150396148|ref|YP_001326615.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|307301118|ref|ZP_07580887.1| response regulator receiver protein [Sinorhizobium meliloti BL225C]
 gi|307317851|ref|ZP_07597289.1| response regulator receiver protein [Sinorhizobium meliloti AK83]
 gi|15074225|emb|CAC45872.1| DivK cell division response regulator, essential cell cycle
           regulator [Sinorhizobium meliloti 1021]
 gi|150027663|gb|ABR59780.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|306896613|gb|EFN27361.1| response regulator receiver protein [Sinorhizobium meliloti AK83]
 gi|306904073|gb|EFN34659.1| response regulator receiver protein [Sinorhizobium meliloti BL225C]
          Length = 123

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 96/123 (78%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+VMIVEDNELNMKLFRDLIE SGY  +QTRNGMEALELAR+H+PD+I+MDIQL E+S
Sbjct: 1   MPKQVMIVEDNELNMKLFRDLIEASGYATIQTRNGMEALELARKHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED EL  IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|331017297|gb|EGH97353.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 160

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  D ++ +GY+ +   +G+ AL   ++ +PD+I++D  +  + G E 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGISALMRIQRRRPDLILLDAMMPGMDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +QIK+  +   IPV+ +TA           + G   Y+ KPI  +  +  +  ++  A
Sbjct: 73  CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131


>gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
 gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
          Length = 907

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63
           V+IV+D+  N+      +E+     +   NG +A+E+   +K  D+++MDI +  + G E
Sbjct: 784 VLIVDDDMRNVFALTAALESQNMEVVFAENGSDAIEMLEGNKTIDIVLMDIMMPVMDGYE 843

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K I+   + +E+P+IA+TA AMK D E+  + G   YISKP+ +   +  +K ++
Sbjct: 844 AMKAIRTYEQFKELPIIALTAKAMKNDREKCIQAGASDYISKPVDMEQLLSLMKVWL 900


>gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
 gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D++    L +  ++     A     G E L+  R+ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I+++     +P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKE---YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|209528024|ref|ZP_03276505.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491543|gb|EDZ91917.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 254

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY      +G+    LA Q  PD+II+D+ L ++ G
Sbjct: 1   MPRILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQALALQLLPDLIILDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    +IPV+ +TA     D+      G + Y++KP  L   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTGDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|281418386|ref|ZP_06249406.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
 gi|281409788|gb|EFB40046.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
          Length = 363

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   ++ +   ++  S +      +G  AL+L  Q KPD+I++DI + E+ G E+
Sbjct: 12  ILIVDDIPEHIDVAVQVLRDSNFKIRVATDGNTALKLIYQQKPDLILLDIYMPEMDGFEL 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + IK   +L+ IPVI +T+F+ +    +  + G + Y+ KP + S  +  +K ++
Sbjct: 72  CRLIKNTPDLKNIPVIFLTSFSDEESIRKGFESGGQDYVVKPFNASELLSRVKTHL 127


>gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 229

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++ + G++     +G  AL   R ++PD++++D+ L  +S
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + I+ +S    +P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GIDVARAIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|320109408|ref|YP_004184998.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319927929|gb|ADV85004.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 234

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D     ++ R  +++SGY      +G+E  E  +  +PD+I+ D+ + E++
Sbjct: 1   MAKRILVVDDERQITRMLRTSLQSSGYDVSIASDGLEGFERFKADQPDLIVTDLAMPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ ++        P+I ++       +      G + Y++KP S+   +  I+  +
Sbjct: 61  GLELTQAVRRM---ATTPIIVLSVRDTDTMKITALDEGADDYLTKPFSMPELLARIRVQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 237

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     K+  + +   G+      +G  A+   R+ +P +I++D+ L    G+E
Sbjct: 13  RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGME 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ ++A   + D+      G + Y+ KP      +  +K  +  
Sbjct: 73  VCRRIR---TFSDAYILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128


>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
 gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
          Length = 762

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 73/121 (60%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++I EDN  N  +   +++   Y      NG EA+EL ++ +PD+I+MD+ +  + G+
Sbjct: 628 KKLLIAEDNRTNQLVVTRMLKNDNYEITIAGNGAEAVELFKKDRPDLILMDMMMPVMDGV 687

Query: 63  EITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T +I+E   +      P+IA+TA A++  +E+    G + ++SKPI+    +ET++K+
Sbjct: 688 EATLKIRELEAVAHEAGCPIIALTANALEAHKEKCLAAGMDDFLSKPINKKSLLETLEKW 747

Query: 120 I 120
           +
Sbjct: 748 V 748



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEIS 60
           +IV+D ELN  +  + + + G    Q  +   ALEL       +   D  I+D Q+    
Sbjct: 486 LIVDDLELNRSILSERLTSWGVQCFQAESANRALELLADLRLEKCHLDFAILDYQMPVTD 545

Query: 61  GLEITKQIKEDSELQEIPVIAVT------AFAMKGDEERIRKGGCEAYISKPISLSIFME 114
           G E+ K I +  E  ++P++ ++      A +++  E             KP+  S   +
Sbjct: 546 GRELAKCIHKIPEFAQVPIVMLSSVEQAMARSVREVENICEIA------LKPLRASHLRQ 599

Query: 115 TIKKYI 120
            I + +
Sbjct: 600 VINRVL 605


>gi|317483795|ref|ZP_07942735.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924898|gb|EFV46044.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 236

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    +L    +           +G    E       D+II+DI L    GL 
Sbjct: 6   RLLVVDDDADIRELLSAYLARYDMTVETAADGAGLFEKLDHAHFDLIILDIMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       IPVI +T+     D     + G + Y+ KP      +  I+  +  A
Sbjct: 66  LCRRLR---GTSAIPVIFLTSLDSSTDRVVGLELGADDYVVKPFDPRELLARIRTVLRRA 122


>gi|310821972|ref|YP_003954330.1| response regulator receiver protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395044|gb|ADO72503.1| Response regulator receiver protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 124

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   + + R L++   Y  L   +GMEA+  A   +PD+I+MD+ +  + G 
Sbjct: 5   KKILLVDDSPTVLLMERLLLQGEPYALLSASSGMEAVRAALAQQPDLILMDVVMPGMDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + ++ D   +  P+I VT  A     ER  + GC  Y++KP + +     I+ ++G 
Sbjct: 65  EACRILRSDEATRTTPIILVTTKASLEHVERGYESGCSDYVTKPFNGNELRAKIENFLGR 124


>gi|302519462|ref|ZP_07271804.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428357|gb|EFL00173.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 227

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+E   +     +   G+      +G E L       PDV+++D  L  + G
Sbjct: 1   MFRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++   E   +P++ VTA     D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  LEVCRRLR-TPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 266

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED        +  +E +G+      +G     LA  +  D++I+D+ L   +G
Sbjct: 39  MQRILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANG 98

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+  +    IP+I +TA     D+ +  + G + Y+ KP      M  I+ ++ 
Sbjct: 99  YEVCEVIRRKNNA--IPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLK 156

Query: 122 EA 123
            A
Sbjct: 157 RA 158


>gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EAL    +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALAKWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E +  ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKN--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 234

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D +  + L    +   G++  +  +G  AL LAR  KPD++++D+ L  + G+
Sbjct: 4   ATILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +Q+  D+    + V+ +TA A + D+      G + Y++KP S    +  +K  +  
Sbjct: 64  EVCRQLHRDT---SVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120


>gi|182412191|ref|YP_001817257.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
           PB90-1]
 gi|177839405|gb|ACB73657.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
           PB90-1]
          Length = 503

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 66/119 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I +D+ LN      +++  GY      NG+EA E AR+ +PD++++D+ + E++
Sbjct: 1   MNARILIADDDPLNQITLEAILQRDGYELHFAHNGLEACEQARRLRPDLMLLDVMMPEVN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E+ ++++ D+E+  +P+I +TA   +       + G + ++SKP         ++  
Sbjct: 61  GFEVCRRVRRDAEIGRMPIILITALLDEKSRLEGLRAGADDFLSKPCPSEELRARVRTV 119


>gi|159030410|emb|CAO91308.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 378

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+ +     R  ++   Y      +G E L+ A Q KP +II D  +  I G
Sbjct: 1   MVRILVIDDDGVIQTFLRRALQKE-YEVFVASDGEEGLKQAGQLKPAMIICDWMMPGIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           LE+ +QIK + +L     I +T+     D  +    G + ++ KPI ++     ++ 
Sbjct: 60  LEVCRQIKLNPQLSTTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEINELKARVRA 116


>gi|15807407|ref|NP_296139.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460240|gb|AAF11967.1|AE002072_9 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 373

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++++ED+     + R  +  +GY+     + M  L  AR+  PD+I++D+ L +  G 
Sbjct: 4   QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGG 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++++S L   P+I +TA     ++ R+   G + Y+ KP      +  +K  + +
Sbjct: 64  DVVQRLRKNSAL---PIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 120


>gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 223

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 1329

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+ L      + +    Y      +G  A +L   ++ D+I++DI L ++ G+ 
Sbjct: 2   KILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+  S  + +P++ +T      D+      G + Y+ KP      +  ++  +  
Sbjct: 62  LCKKIR--SSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118



 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+   ++L + L+   G   +      +      +  PD++I+DI++  +SG+E
Sbjct: 383 KILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGIE 442

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I+   + +E+P++ +T  +      ++   G + ++SKPI +S  +  I   +  
Sbjct: 443 LCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501



 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++ +D+ +  +  ++L+   GY  L   +G +A+  A    PDVI++D+ +  ++G E 
Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135

Query: 65   TKQIKEDSELQEIPVIAVTAFAM------KGDEERIRKGGCEAYISKPISLSIFMETIKK 118
               +K+ S+ ++IP++  + +        + ++          ++SKP+  +  + +++K
Sbjct: 1136 MAGLKKCSDTKDIPIVICSVYKSSQNNPNRQEDTNAESVKFADWLSKPVEETDLLNSLRK 1195

Query: 119  YIGE 122
             + E
Sbjct: 1196 VVSE 1199



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++I+ED+     L   L +         + G EA+ L+++  PD++I+D+ L E  G  
Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYIGE 122
            +   +K+  +L  IPV+  +A  +   E    K G   + +K  +++  F + +   +  
Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTIQEFEQRVMDLLQR 1324


>gi|262196998|ref|YP_003268207.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Haliangium ochraceum DSM 14365]
 gi|262080345|gb|ACY16314.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Haliangium ochraceum DSM 14365]
          Length = 1131

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 66/119 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D++    + R+++E +GY      +G  AL   ++++PD++++DI + E+ G +
Sbjct: 799 RVLVVDDDDAIRAICREVLENAGYAVRDVPDGYAALTETKRYRPDLLLLDIMMPEMDGFQ 858

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++K D      P+I ++A     D+ R  + G E Y++KP   +  +  + K +  
Sbjct: 859 TAERLKSDPSTSMTPIIFLSAKGATADKVRAFRSGAEDYVTKPFDAAELVARVSKTVER 917



 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV +        + ++  +G+  L   +  EAL L R+ +P + ++     +  GL 
Sbjct: 675 TVLIVAEQWRASYALKGILLMAGFQVLIAEDADEALALTREEQPSLAVIYTDTPDRDGLA 734

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +  + D + ++  V+ ++    +   +   +     ++  P++   F+E   + I
Sbjct: 735 LVEIFRHDPDTRKTAVLVIS--GTEDLRDAASRANANEFLHTPLAPGAFVEACTRLI 789


>gi|218438405|ref|YP_002376734.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218171133|gb|ACK69866.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 361

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+DN  N+ L +  +E  GY      +G+ AL   +   PD+I++D+ +  I+G E+
Sbjct: 12  ILAVDDNPDNLFLIKLALEQEGYRVHLVEDGLTALAQIQYAPPDLILLDVMMPGINGYEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+++  +  IP++ +TA+  +    +    G + +I KP+ +      ++  + 
Sbjct: 72  TRRIRQNPNIPFIPILLITAY-EEPSLVQGLDVGADEFIRKPVQIDELQARVRSLLR 127


>gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
          Length = 229

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  + G
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I++++  ++I +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 61  FQVCKTIRKEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472]
 gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 1480

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
            +V++VED+ +N ++ + L++  G  A    NG  A+E  +       +I+MD+Q+ E+ G
Sbjct: 1147 RVLLVEDDAINREVAQALLQDVGLEADMAENGKIAVERVQAAPARYALILMDVQMPEMDG 1206

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            LE T++I+     + IP++A+TA A   D    R+ G   +++KP+        +++++
Sbjct: 1207 LEATRRIRALDAGENIPIMAMTANAFAEDRSACREAGMNDFVAKPVDPDQLFAALRRWL 1265


>gi|23016209|ref|ZP_00055967.1| COG3437: Response regulator containing a CheY-like receiver domain
           and an HD-GYP domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 379

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
            V++V+D   N+KL   L++   Y      +G++AL +A+    PD+I++DI + E+ G 
Sbjct: 8   TVLVVDDTPDNLKLMSGLLKDF-YRVKIANSGVKALAIAQSETPPDLILLDIMMPEMDGY 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K D   +EIPVI +TA A   DEE   + G   YI+KPIS  I M  ++ ++
Sbjct: 67  EVCRRLKSDPATREIPVIFLTAKAETQDEEMGLRVGAVDYITKPISPPIVMARVETHL 124


>gi|311695506|gb|ADP98379.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 228

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++VED++   +L    +   G+   +  NG + L LA     D++++DI L +IS
Sbjct: 1   MQNRVLLVEDDDELRELLARYLTNQGFTIREAANGRDGLALALGQDCDIVVLDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++ ++    +PV+ +TA   + D     + G + YI KP +    +  ++  +
Sbjct: 61  GLEVLRELRAET---HLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|307133596|dbj|BAJ19085.1| GppX [Tannerella forsythia]
          Length = 710

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN         L     Y      NG E +E A    PD+II D+ +  + GLE
Sbjct: 461 RLLVIEDNHDIAAYIGSLFADR-YAVSYAANGKEGMEKALDLVPDLIITDLMMPGMDGLE 519

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ +  +  IP+I VTA   + +  +  + G +AYISKP +       ++K +  
Sbjct: 520 VCRQVRGNEIINHIPIIVVTAKITEEERIKGLEAGADAYISKPFNADELRTRVEKLLDR 578


>gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22]
 gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces
           scabiei 87.22]
          Length = 241

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 17  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDG 76

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 77  LEVARRLRAEGHT--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 134

Query: 122 E 122
            
Sbjct: 135 R 135


>gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 809

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED   N      L+E  G+  +   +G +ALEL +QH+ D I+MDI++  + GLE
Sbjct: 679 RILVAEDEPTNQLFAGRLLEYLGHKVMIAEDGSQALELLQQHEFDCILMDIRMPFMDGLE 738

Query: 64  ITKQI---KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             + I   +E    +++P+IA+TA AM+GD E   + G   Y++KP+      + ++
Sbjct: 739 AARAIRTSRELGARRDVPIIAMTAHAMEGDREVFFQAGMNGYLAKPVQKEDLEKVLQ 795


>gi|124009577|ref|ZP_01694251.1| adenylate cyclase [Microscilla marina ATCC 23134]
 gi|123984816|gb|EAY24791.1| adenylate cyclase [Microscilla marina ATCC 23134]
          Length = 362

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M   ++IV+D   N+K+ R+ + T+   +  LQ  NG +A ++A++  PD++IMD  +  
Sbjct: 1   MKATILIVDDEVTNLKILREYLTTADQEFRILQATNGKQAFDIAQKADPDLVIMDWMMPV 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG++  K IK     Q IPVI  TA     D +   + G   Y+ KPI  +  +  ++ 
Sbjct: 61  MSGIDALKNIKTTESTQNIPVIMATAKTSAQDLKEALEAGAMDYVRKPIDKTELLARVRS 120

Query: 119 YI 120
            I
Sbjct: 121 AI 122


>gi|15643234|ref|NP_228278.1| response regulator [Thermotoga maritima MSB8]
 gi|251836870|pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
           Reveals Insights Into Two-Component Signaling And A
           Novel Cis-Autophosphorylation Mechanism
 gi|251836872|pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-Response Regulator Complex
           Reveals Insights Into Two-Component Signaling And A
           Novel Cis-Autophosphorylation Mechanism
 gi|251836873|pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
           Reveals Insights Into Two-Component Signaling And A
           Novel Cis-Autophosphorylation Mechanism
 gi|4980976|gb|AAD35552.1|AE001724_10 response regulator [Thermotoga maritima MSB8]
          Length = 122

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D+ +  K+    ++  GY  ++  NG  ALE   +  PD+I++DI +  + 
Sbjct: 1   MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++E  E + IPVI +TA   + DE      G    + KP S S F+E +K  +
Sbjct: 61  GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120

Query: 121 GE 122
            E
Sbjct: 121 NE 122


>gi|300866840|ref|ZP_07111517.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335150|emb|CBN56677.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1017

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 67/118 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED  +N  L   L+E+ G+      NG+EA+   +   P +I MDI++ E+ G E
Sbjct: 813 RILVAEDVLVNRHLLVTLLESVGFEVCAVTNGIEAIACWQDWHPHLIFMDIEMPEMDGYE 872

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+QI+       + ++A+TA+A + D     + GC+ YI+KP + +I  + I  Y+G
Sbjct: 873 ATRQIRARGVQDNVAIVALTAYAFEEDRTASLQAGCDDYIAKPFTETILFDKIAHYLG 930


>gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 237

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ ED+          +   GY      +G+EAL  A +  PDV+++D+ +  I GL++ 
Sbjct: 2   LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTPPDVLVLDVMMPGIDGLQVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++ + +    P++ +TA     D       G + Y+ KP  +      ++  +  
Sbjct: 62  RVLRAEGD--RTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116


>gi|297627027|ref|YP_003688790.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922792|emb|CBL57370.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 225

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E        +++  G+      +G + L    ++  D++++D+ +  + G
Sbjct: 1   MSRILIIEDEESYRDAMSFMLDREGFAVAAAPDGEQGLAEFDRNGADLVLLDLMMPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K +++ S   ++PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  IEVCKALRQRS---DVPVIMVTARDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+V+D     +L    +  +GY      +G EA+E+  + KPD+II+D+ L +I G  +T
Sbjct: 1   MVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTVT 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 61  RRIRQEGITA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 115


>gi|89094274|ref|ZP_01167216.1| chemotaxis response regulator [Oceanospirillum sp. MED92]
 gi|89081529|gb|EAR60759.1| chemotaxis response regulator [Oceanospirillum sp. MED92]
          Length = 120

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 61/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D+     +    ++  GY  ++  NG EAL  A+  + D+++ D+ +  + G
Sbjct: 1   MASILVVDDSASLRNMVTFTLKQEGYQVVEAGNGQEALAKAQGARFDLVLTDVNMPIMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +  ++++    +  P++ +T  +    ++R +  G   ++ KP +    + TIK+ + 
Sbjct: 61  ITLCAELRKLPAFKFTPILVLTTESSADMKQRGKAAGATGWLVKPFNPEKLISTIKRVVR 120


>gi|87121478|ref|ZP_01077367.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86163321|gb|EAQ64597.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 239

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+     L  + +   G        G    +   +   DVI++D+ +    GL 
Sbjct: 6   RVLVVDDHLEIRTLLAEYLHKHGMRVETADGGESMRQQLSRASFDVIVLDLMMPGEDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+E S    IPVI +TA   + D     + G + YI+KP S    +  IK  +  +
Sbjct: 66  LCRNIREKSA---IPVIMLTAMGEEADRIIGIEMGADDYITKPFSARELLARIKALVKRS 122


>gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG]
          Length = 1307

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E +G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1187 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1246

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  ++K++ 
Sbjct: 1247 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLR 1305


>gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
          Length = 227

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++++D+   + + ++ +E  G+      +G    E A +   D+I++D+ + +++G
Sbjct: 1   MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  + I+ +   +  PV+ +TA     D     + G + Y+ KP +    +  ++  + 
Sbjct: 61  IDALRAIRAE---KNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|153869727|ref|ZP_01999263.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073808|gb|EDN70738.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 207

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59
              ++IV+D+ ++  +    +  + +  L  R+G EAL+       KPD+I++D+ +  I
Sbjct: 4   SPTILIVDDSAVSTTVLSHFLTLNDFKVLVERSGDEALQFMNSASSKPDLILLDVMMPGI 63

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG E  K++K++++ QEIP+I +TA +  GD+ +  + G   Y++KP      +  I  +
Sbjct: 64  SGFETCKELKQNTKTQEIPIIFMTALSDTGDKIKAFELGAVDYVTKPFQQEEVLARINTH 123

Query: 120 I 120
           +
Sbjct: 124 L 124


>gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED+E   +L RD +E +G+     ++G + L+LA   + D+I++D+ L    G
Sbjct: 1   MKKILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEEFDLILLDVMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+    ++EIP++ VTA      + +    G + YI KP S S  +  +  +I 
Sbjct: 61  FKVCQEIRA---VKEIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHIS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
 gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
          Length = 1521

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
            +++IVEDN  N ++ R+L+E  G       +G EA+E+   H    D+++MD+Q+  + G
Sbjct: 1172 RLLIVEDNLNNQQIARELLEDEGADVRIANHGKEAIEILEHHPSLFDLVLMDLQMPVMDG 1231

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
               TK I++   L+ +P+IA+TA AM  D +     G   +I KP  L+  ++ I+KY
Sbjct: 1232 YNATKYIRKSLGLKNLPIIAMTANAMASDRDACLAAGMNDHIGKPFDLNNLIQVIRKY 1289



 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
            +V++V+DN     L + + E+  +      +G EAL+L RQ          + +D Q+  
Sbjct: 1024 RVLVVDDNPTACDLIKQMGESLKWTVDVATSGNEALQLMRQQHDSGITYGALFIDWQMPG 1083

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115
            + G + +K ++E   +   P ++ +TA   +   +R  +     + Y+ KPI+ S+ +++
Sbjct: 1084 LDGWQTSKYVRELMPVDNGPMIVMITAHDREMLLQRSEEDQALLDGYLVKPITASMLLDS 1143

Query: 116  I 116
            +
Sbjct: 1144 V 1144


>gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 231

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++ ED+   +    D ++  GY     ++G  AL  A     D+I++D+ L   S
Sbjct: 1   MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K+++E      +P++ +TA     D+    K G + Y++KP  +   +  I+  +
Sbjct: 61  GFDVCKKLRESEIG--VPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 240

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D E   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 14  RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 74  VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129


>gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1197

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+DN         +++ SGY     RNG E  ++ ++  P +I+ D+ +  +SGL
Sbjct: 832 ARILVVDDNSDLRAYVGSILKQSGYQVWTARNGEEGWQMTQKCHPQLIVTDLMMPVMSGL 891

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++   I+   + + IP+I +TA A +       + G +AY+SKP +    +  ++  +
Sbjct: 892 DMIHTIRGSQDFKGIPIILLTAKADEASRIEGTEKGADAYLSKPFNDRELLAEVRNLL 949



 Score = 70.2 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 32  TRNGMEALELAR-QHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGD 90
             NG  ALE+   +    VII D ++  +SG E        ++  +I  I +T +    D
Sbjct: 3   ADNGPAALEILEAEGDVAVIISDQRMPLMSGTEFLSI--TAAQYPDIIRIILTGYTDVED 60

Query: 91  EERIRKGG-CEAYISKPISLSIFMETIKKYI 120
                  G    Y++KP +       +++ +
Sbjct: 61  LVEAINAGKVFKYVTKPWNAEELKSVVRQAM 91


>gi|86741974|ref|YP_482374.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86568836|gb|ABD12645.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 272

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++ VED    ++  R  +   G+      +G  AL  A    PD++I+D+ L ++ G
Sbjct: 23  MTRLLFVEDEPQLLRAMRITLRARGFEVRTALDGRHALSEAASCPPDLVILDLGLPDMDG 82

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + ++       +P+I ++  A   D+      G + Y++KP S+   +  ++    
Sbjct: 83  VEVIQGLRA---WTGVPIIVLSGRASGHDKVAALDAGADDYVTKPFSIDELLARVRAVTR 139

Query: 122 EA 123
            A
Sbjct: 140 RA 141


>gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 282

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++V+D     +  +  +E SG +      N  EA +  + H P ++I DI + ++ G + 
Sbjct: 59  LLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQF 118

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ED+  Q +PV+ +TA  M GD  +  + GC+A++SKP         ++  +  
Sbjct: 119 LQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR 176


>gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 236

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+    KL +  +E + Y  +   +G EAL L      D++++D+ L  I G E+
Sbjct: 6   ILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVMLPGIDGFEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++    +E+P++ +TA   + D+    + G + Y+ KP S       I+  +  
Sbjct: 66  CRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123


>gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 233

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D          ++   GY      NG    E A Q   D++I+D  L   +GL 
Sbjct: 2   KILLVDDEIELTDPLSRVLTREGYEVDVADNGATGSEFATQGNYDLLILDWMLPGKTGLA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  SE +  PV+ +TA     D  +    G + Y+ KP  L   +  ++  +  
Sbjct: 62  ICQKLR--SEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 283

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  A+  AR  +PD +++D+ L ++ GL 
Sbjct: 57  RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLA 116

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   E  ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 117 VLGRLRR--EYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 174


>gi|254712298|ref|ZP_05174109.1| Probable transcriptional regulator ycf27 [Brucella ceti M644/93/1]
 gi|254715370|ref|ZP_05177181.1| Probable transcriptional regulator ycf27 [Brucella ceti M13/05/1]
 gi|261217099|ref|ZP_05931380.1| two-component system response regulator [Brucella ceti M13/05/1]
 gi|261319969|ref|ZP_05959166.1| two component system response regulator [Brucella ceti M644/93/1]
 gi|260922188|gb|EEX88756.1| two-component system response regulator [Brucella ceti M13/05/1]
 gi|261292659|gb|EEX96155.1| two component system response regulator [Brucella ceti M644/93/1]
          Length = 238

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D++    L  + ++  G       NG E L++  +   D++I+D+ L   SG+
Sbjct: 5   AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEILDVLSRTPIDLVILDVMLPGKSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + ++       +P+I +TA A   D+    + G + YI+KP      +  I+  +  
Sbjct: 65  EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121


>gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 227

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +D      + +  +E  GY      +G  AL        D++I+D+ + E+ GL
Sbjct: 4   ARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPELDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E     ++P+I +++ + + D     + G + Y++KP S       +K  +  
Sbjct: 64  NLCRKLRERG---DVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRR 120


>gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
 gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I +D      L R  +E   Y  ++  +G  AL+L R  +P + I+DI + +I 
Sbjct: 1   MDYKILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAEQPALCILDIMMPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +QI+++S    IPVI ++A     ++      G + Y++KP +    +  +   I
Sbjct: 61  GYHVLQQIRKES---NIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|153869355|ref|ZP_01998987.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074121|gb|EDN71011.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1314

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV+IV+D+  N      ++E      +   NG EAL+L  +H+   +++MDI + E+ G
Sbjct: 1194 KKVLIVDDDARNTFALAIVLEEKQMEVIAGNNGFEALKLLDEHQDIAIVLMDIMMPEMDG 1253

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  +QI+     +++P+IA+TA AMK D+ +  + G   Y+SKP+     +  ++ ++
Sbjct: 1254 YEAMRQIRARDGFRKLPIIALTAKAMKSDKAKCIEAGANDYLSKPVDTDKLISLMRVWL 1312



 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED+    +L  +L     +  L   +G+  L+LA Q+ P  II+D+ L  + G ++ 
Sbjct: 929  LIVEDDPKFARLMVELAHEQQFKCLVGEDGLTGLQLAEQYNPHAIILDVGLPHLDGWKVM 988

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +Q+K + + + IPV  ++AF         +K G   Y+ KP+S+    ET +K 
Sbjct: 989  EQLKNNPDTRHIPVHFISAFDQS---LAAKKMGAIGYLLKPVSMEQLSETFQKI 1039



 Score = 34.7 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K V++V DNE++ +   +++             + AL+  ++   D II+D+++++ +G 
Sbjct: 1048 KSVLVVVDNEVHQQQILNIVSGDNIQTTLAATTIAALQNLKETTFDCIILDLEIEQRAGC 1107

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-SKPI-SLSIFMETI 116
            ++ +Q++      +  VI   A      EE+     C   +  K + S    +  +
Sbjct: 1108 QLLEQMQTIEGFCQTQVIVY-AKRELTSEEKALLMQCADELPVKSVSSPERLLNEV 1162


>gi|126658584|ref|ZP_01729731.1| response regulator receiver domain protein (CheY-like) [Cyanothece
           sp. CCY0110]
 gi|126620171|gb|EAZ90893.1| response regulator receiver domain protein (CheY-like) [Cyanothece
           sp. CCY0110]
          Length = 335

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 67/116 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L  ++++TSGY      +G +ALE      PD+I++D+ + +++G+E+
Sbjct: 14  ILIVDDIPKNLQLLIEILDTSGYGTTFAVSGEQALERVEVTDPDLILLDLMMPKMNGIEV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++K + + ++IP+I +TA           + G   Y++KP      +  IK ++
Sbjct: 74  CKRLKNNPKTEQIPIIFLTAATETNYLISAFEAGAVDYVTKPFKTPELLARIKTHL 129


>gi|156743077|ref|YP_001433206.1| response regulator receiver protein [Roseiflexus castenholzii DSM
           13941]
 gi|156234405|gb|ABU59188.1| response regulator receiver protein [Roseiflexus castenholzii DSM
           13941]
          Length = 200

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M +    +++V+D   N+ L    +  +GY  L    G  AL+ A   +PD+I++D+ + 
Sbjct: 1   MSQSPDTILVVDDTPANLALLFTGLRRAGYKVLINERGDVALQTAINVQPDLIVLDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G E  +++K D   ++IPVI +TA     +E    + G   YI+KPI++ + +  I 
Sbjct: 61  GMDGFETCRRLKADPRTKDIPVILMTALTDAIEEVTGLRAGAVDYITKPINVDVVLARIN 120

Query: 118 KYI 120
            ++
Sbjct: 121 THL 123


>gi|94263702|ref|ZP_01287510.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455901|gb|EAT06060.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 407

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
             +++V+D  +N+ + +  +++  +  L   NG +AL+LA+   +PD+I++DI +  + G
Sbjct: 8   ATILVVDDVAINIMIIKGALKSE-WNLLTAENGKQALDLAQGTPRPDLILLDIMMPGMDG 66

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +Q+K D E + IPVI VTA      EE+  + G   YISKPI   I    ++ +I
Sbjct: 67  HEVCRQLKADPETRGIPVIFVTAMGDAVSEEQGLQLGAIDYISKPIKPEILRVRVRNHI 125


>gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 226

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 72/119 (60%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D E  ++L +  +E SG+    +    + +EL  + KPD++++D  L +ISG++
Sbjct: 2   KILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREKPDLLLLDWMLPKISGID 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+I++D ++ ++PVI +TA  M+ D+ +    G + YI+KP S+   M  I   +  
Sbjct: 62  ILKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRR 120


>gi|302340470|ref|YP_003805676.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301637655|gb|ADK83082.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 365

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 61/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D   N++L   +++   +      +G  AL +AR+   D+I++DI + ++ G  
Sbjct: 9   RILIVDDVYRNIQLAGAILKQENFHFSFATDGNTALRVAREGGVDLILLDIMMPDLDGFS 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +   +KE+ E  +IPVI +TA        R    G   Y++KP   +  +  ++ ++
Sbjct: 69  VCSLLKENPETADIPVIFLTAKNDTESIVRGFDLGAVDYLTKPFQAAELLARVRTHV 125


>gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
 gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
          Length = 413

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED+E         +    Y      +G    E A     D+I++D+ L ++ G+ 
Sbjct: 2   KVLLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEAFTYDLILLDVVLPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++        P++ +T+      +      G + Y+ KP         I+  +  
Sbjct: 62  LCRQLRSRHTT--TPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRR 118


>gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
          Length = 230

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED+    ++    +   G+  +   +G E + L +Q   D+I++DI L +++G
Sbjct: 1   MQRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K I+E S    IPV+ ++A     D+      G + YI+KP S+      +K  I 
Sbjct: 61  MDFLKIIREKS---NIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|294507366|ref|YP_003571424.1| Response regulator receiver containing Stage II sporulation protein
           E (SpoII) domain [Salinibacter ruber M8]
 gi|294343694|emb|CBH24472.1| Response regulator receiver containing Stage II sporulation protein
           E (SpoII) domain [Salinibacter ruber M8]
          Length = 371

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+    +L +  +    Y      NG EAL+   +  PD+II DI + ++ G  
Sbjct: 5   TILVVEDDSTVRELLKYRLGKH-YEVYTATNGEEALDQIEETIPDLIISDIMMPKMDGFA 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++ D   + IP I +TA A +   ++  + G + YI+KP  +   +  +++ +  
Sbjct: 64  LQSALQTDKNTRVIPFIFLTARADEEARQQGERKGVDDYITKPFDMETLLSRVERLLER 122


>gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D E         ++       +  NG EAL++  +    +I+MDI + ++
Sbjct: 1   MTKYQVLVVDDEEEIRDAIEIYLKNESMTVFKASNGQEALDVLEREDIQLILMDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+  T QI++    + IP+I ++A +   D+      G + Y++KP +    +  +K  
Sbjct: 61  DGMTATFQIRQK---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
 gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
          Length = 1342

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDNE    L   L     Y   + ++G E L+  ++ +PD+++ DI + ++SG+E
Sbjct: 1093 KILIVEDNEELRGLLVRLFSKV-YSVCEAQDGEEGLDKTKEIQPDIVLSDIMMPKMSGIE 1151

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK + E   IPVI +TA   +    +  K G + Y++KP ++          +
Sbjct: 1152 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1208


>gi|189464788|ref|ZP_03013573.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM
            17393]
 gi|189437062|gb|EDV06047.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM
            17393]
          Length = 1288

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IV+DN+      +   E   Y  L+  NG EA EL ++  P++ I D+ + ++ G 
Sbjct: 1041 KSILIVDDNKDLRNFLKCSFENQYY-ILEAGNGNEAWELLQKESPELTISDVMMPDMDGF 1099

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K IK   E   IPVI +T+   K D+      G E YI+KP  +S+  + IK  + 
Sbjct: 1100 ELCKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMR 1158


>gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99]
 gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99]
          Length = 241

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP+I +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQQGNT--IPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 230

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D      L    +  +G+      NG +A+    + +PD+II+D+ L +++G  
Sbjct: 6   KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPDMNGFG 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK+++        P++ +TA     D+      G + Y++KP SL   +  IK  +  
Sbjct: 66  VTKRLRAAGYTA--PILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRR 122


>gi|29350071|ref|NP_813574.1| two-component system sensor histidine kinase/response [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|298384392|ref|ZP_06993952.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_14]
 gi|29341983|gb|AAO79768.1| two-component system sensor histidine kinase/response [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|298262671|gb|EFI05535.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_14]
          Length = 1353

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN    +   + +    +  L+  NG EALE  + ++ DVI+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRRYLSNGLADL-FNTLEAGNGEEALEKLKDNEVDVIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A     D+    + G + YI KP SL+I    I+  + 
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220


>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1353

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N K+   +++  GY A    NG+E LE  +Q   DVI+MD+Q+ ++ GLE
Sbjct: 1205 RILLAEDNAVNQKVALHILKRMGYRADVAANGLEVLEALQQRPYDVILMDVQMPKMDGLE 1264

Query: 64   ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T++I       + P +IA+TA A+ GD ER    G + YISKPI +      + +
Sbjct: 1265 TTERICAQWPPSQRPWIIAMTANALAGDRERCFAAGMDDYISKPIKIEALAAALNR 1320



 Score = 80.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V++++DN  + +    L+   G + +   +    LE A     D+ ++D+ + +++GL
Sbjct: 1066 KRVLVIDDNAASRENLCTLLHNWGMVPIGYSDPRLVLEAA--PPWDLAVIDLNMPQMTGL 1123

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ ++++ +    + P+I +T  +      R ++    A++ KPI      +T+ + +
Sbjct: 1124 QLAERLQSEPNFNQQPMILLTPLSWLETASR-KEL-ITAHVPKPIRPLTLRQTLIRTL 1179


>gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 247

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L    +   G+      +G  A+  AR+ +PD +++D+ L ++ GLE
Sbjct: 21  RVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPDLDGLE 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ D    ++PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 81  VLRRMRAD--TPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRS 138


>gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
 gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
          Length = 232

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALE+ ++   D+II DI +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++    +  + P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
 gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
          Length = 225

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+   +++    +  +G+  L+ ++G +ALEL  +   D+II+D+ L ++ G +
Sbjct: 2   RVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELFPRA--DLIILDLMLPKLDGFK 59

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   E  E+P++ +TA   + +  +  + G + Y+ KP S    +  +K  +  A
Sbjct: 60  VLEEVRR--ERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRA 117


>gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 230

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+E  +    + ++   YI     +G  A +       D+I++D+ L ++ G+ 
Sbjct: 2   KILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVMLPKLDGIA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ +    + P++ +TA     D  +    G + Y+ KP  L      I+  +  
Sbjct: 62  LCQQLRANG--CKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRR 118


>gi|146341430|ref|YP_001206478.1| putative response regulator in two-component regulatory system
           (CheY-like protein) [Bradyrhizobium sp. ORS278]
 gi|146194236|emb|CAL78258.1| putative response regulator in two-component regulatory system
           (CheY-like protein) [Bradyrhizobium sp. ORS278]
          Length = 121

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 79/121 (65%), Positives = 104/121 (85%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLFRDL+E  GY    T +G+EAL++ R+ +PD+I+MDIQL ++S
Sbjct: 1   MGKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSSGVEALDIVRRTRPDLILMDIQLPQVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IK+D +L+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ET++++I
Sbjct: 61  GLEVTKWIKDDPDLRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|146281299|ref|YP_001171452.1| DNA-binding response regulator ColR [Pseudomonas stutzeri A1501]
 gi|145569504|gb|ABP78610.1| DNA-binding response regulator ColR [Pseudomonas stutzeri A1501]
 gi|327479458|gb|AEA82768.1| DNA-binding response regulator ColR [Pseudomonas stutzeri DSM 4166]
          Length = 227

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN   +    D +E  GY+    ++G+  L LA   + D+I++DI L  I G +
Sbjct: 2   RILVIEDNRDILANVLDYLELKGYLVDCAQDGLSGLHLAATQEYDLIVLDIMLPGIDGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + K+++ED+  ++ P+I +TA     D  +  + G + Y+ KP +LS  +  I+  +
Sbjct: 62  VCKRLREDAR-RDTPIIMLTARDALPDRIKGLEAGADDYLIKPFALSELVARIEAVL 117


>gi|118594849|ref|ZP_01552196.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Methylophilales bacterium HTCC2181]
 gi|118440627|gb|EAV47254.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Methylophilales bacterium HTCC2181]
          Length = 387

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            +++V+D   N++L   L++   Y      +G + L++A     PD+I++DI + E+ G 
Sbjct: 9   TILVVDDAPANLQLMSGLLQ-ENYRVKAATSGEKGLKIALTSPQPDLILLDIMMPEMDGY 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K++K D   + IP+I +TA +   DE      G   YI KP+S  I M  IK +I
Sbjct: 68  EVCKRLKADERTKGIPIIFLTAKSEAEDEALGLSCGAVDYIIKPVSPPIAMARIKTHI 125


>gi|146305399|ref|YP_001185864.1| osmolarity response regulator [Pseudomonas mendocina ymp]
 gi|145573600|gb|ABP83132.1| Two-component response regulator OmpR [Pseudomonas mendocina ymp]
          Length = 245

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L     +  GY      N  +   L  +   +++++D+ L    GL 
Sbjct: 13  KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLPGEDGLS 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++E +   +IP+I +TA   +    +  + G + Y++KP +    +  IK  +  
Sbjct: 73  ACRRLRESNN--QIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRR 129


>gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 248

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 24  KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 84  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139


>gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED     +L RD +E SGY     + G + L  + +   ++II+D+ L  I 
Sbjct: 1   MKKRILIVEDEVTIAELQRDYLEISGYDVEIEKTGDKGLSRSLKEDFNLIILDLMLPNID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI ++I+E    + IP++ V+A     D+ R    G + YI+KP S S  +  +  +I
Sbjct: 61  GFEICRKIRES---KNIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHI 117

Query: 121 GE 122
             
Sbjct: 118 SR 119


>gi|258655134|ref|YP_003204290.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558359|gb|ACV81301.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 225

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D    ++  R  +    +  +   +G  ALE A  H PD++++D+ L ++ G
Sbjct: 1   MSRVLLVDDEPQLLRALRINLAARHFDVVTAEDGSGALEAAATHPPDLVVLDLGLPDLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++       +P+I ++      D+      G + Y++KP SL      I+    
Sbjct: 61  VEVIRRLR---VWTAVPIIVLSGRVGSSDKVLALDAGADDYVTKPFSLDELFARIRAVTR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 940

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N KL   L+   G       +G EA++   + +  +I+MD QL +++G E 
Sbjct: 812 VLVVEDNPVNQKLVTALLRKMGLSVRLASSGFEAIDALGEEEYALILMDCQLPDLNGFET 871

Query: 65  TKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+ I+  E    Q IP+IA+TA +M+GD E+  + G + Y+SKPI        + +++
Sbjct: 872 TQVIRDSEAETGQHIPIIAMTALSMQGDREKCLQAGMDDYVSKPIDRKQLTAVLARWL 929


>gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
          Length = 268

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D          ++   GYI   T NG    ELA+    D++I+D  L E +GLE
Sbjct: 34  KILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGLE 93

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++     + IPV+ +TA     D  +    G + Y+ KP  L   +  ++  +  +
Sbjct: 94  ICQELRRQG--KNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRS 151


>gi|260588963|ref|ZP_05854876.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083315|ref|ZP_08332428.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540742|gb|EEX21311.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330404396|gb|EGG83941.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L +D +E SG+       G   L+ A +   D+ I+D+ L E+ G
Sbjct: 1   MSKILIVEDEEAIADLEKDYLELSGFEVEIENRGDVGLKRALEEDYDLFILDLMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++I+     +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICREIRNQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|326796406|ref|YP_004314226.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326547170|gb|ADZ92390.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 237

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I++D+     L ++L+    +      NG E L+       D++++D+ + +++G
Sbjct: 1   MQHILIIDDDIELTDLLKELLSFENFTISVAHNGEEGLDRIDD-TIDMVLLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  ++++E S   ++PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  IDTLRRLRESS---DLPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILR 116

Query: 122 EA 123
            A
Sbjct: 117 RA 118


>gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2]
 gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++++ED+    ++    +   G+  +   +G E + L +Q   D I++DI L +++G
Sbjct: 1   MQHILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIMLPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K I+E S+   +PV+ ++A     D+      G + YI+KP S+      IK  I 
Sbjct: 61  MDFLKMIREQSK---VPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 246

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VED           +   G+ A    +G  A++ A +  PD+IIMD+ L  + G+
Sbjct: 19  RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGI 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I        IPV+ +TA   + D       G + Y+SKP S+   +  ++  +  
Sbjct: 79  EATKRI---EAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 135


>gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 229

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++ + G++     +G  AL   R ++PD++++D+ L  +S
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAFRDNRPDIVLLDLMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + I+ +S    +P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GIDVARAIRGESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|256419739|ref|YP_003120392.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256034647|gb|ACU58191.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 229

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+++ED     ++ +D +E  G+  L   +G E L L ++H+PDV+++DI +  + G
Sbjct: 1   MSKVLLIEDEWQLGQIVKDSLEMRGFEMLYAADGKEGLRLYQEHQPDVVVLDIMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +T +I++  +    P+I +TA +   D  +  + G   Y+ KP S+   +  IK  + 
Sbjct: 61  FTVTTEIRKLDKT--TPIIFLTAKSQTTDVVKGFELGGNDYLKKPFSMDELIVRIKALLE 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
            A1501]
 gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
            A1501]
          Length = 1170

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + +++V+D+  N+      +E  G +    RNG+EA++  +     D+++MDI + E+ G
Sbjct: 1046 RTILVVDDDVRNVFALTSALEQKGALVEIARNGLEAIDKLQHDAGIDLVLMDIMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
                ++I++D+   ++P+IAVTA AMK D++R  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 FTAMQEIRKDARFAKLPIIAVTAKAMKDDQDRCLRAGANDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 95.2 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED     ++ RDL     Y  L ++N  +  + A Q+KPD I++D++L + SGL +
Sbjct: 780 VLVIEDEPQFARILRDLAHELEYSCLLSQNADDGFDTAVQYKPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            +++KE+S  + IPV  V+   ++  +E   + G   Y  KP +     + 
Sbjct: 840 LERLKENSATRHIPVHVVS---VEDRKEAALQMGAVGYAMKPTTREELKDV 887



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 46/93 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L  +    LIE           G +ALE  R    D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDALQRESMSRLIEDVDIEITAVEFGAQALEQLRDTVFDCMIIDLKLPDMDGS 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIR 95
           E+ +++ ++      PVI  T   +  DEE   
Sbjct: 960 ELLERMAKEDICSFPPVIVYTGRNLTRDEEAAL 992


>gi|186474905|ref|YP_001856375.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184191364|gb|ACC69329.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1631

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DN       R ++  +G+      +GMEAL  AR  +P++++ D+ + ++ G  
Sbjct: 644 KLLVVDDNADLRDYMRRILTAAGHQVYVAADGMEALAAARALQPELVVSDVMMPKLDGFG 703

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK-----K 118
           + + ++ D  L+E+PV+ ++A A +  +    + G + Y+ KP +    +  +       
Sbjct: 704 LLRALRADDGLREMPVLLLSARAGEEAKVDGLESGADDYLIKPFAARELLARVAGNLQLA 763

Query: 119 YIGE 122
            +  
Sbjct: 764 RLRR 767



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61
             +++VED+E       +++   GY  L+ ++   AL +     P D++  D+ +   +  
Sbjct: 1361 TILVVEDDEDVRTTVVEMLSALGYRVLKAKDAQSALAIVESGVPIDLLFTDVVMPGSLRS 1420

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMETIKKYI 120
             E+ ++ +E      I V+  + +             G    +SKP S       I+  +
Sbjct: 1421 TELARKARE--RQPGIAVLFTSGYTDNAIVHAGRLDEGV-ELLSKPYSREALARKIEHAL 1477



 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ VED+EL      +L+ T G    +    ++AL+L  +   DV++ DI L   SG++
Sbjct: 1516 RILFVEDDELVRVSTAELLRTFGVEVAEASGAVQALDLLHEKSFDVLLTDIGLAGASGID 1575

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG-GCEAYISKPISLSIFMETIK 117
            +   I        + VI VT        E+  +  G    + KP      +  ++
Sbjct: 1576 LA--IDATGRESRLRVIFVTGSDAALSPEQQLRLPGASQ-LRKPYDPLDLVNALR 1627


>gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 252

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L    +   G+      NGM AL  ARQ +PD +++D+ L ++ G  
Sbjct: 27  RVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGFA 86

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E +    +PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 87  VLRRLREVAPT--VPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS 144


>gi|304320055|ref|YP_003853698.1| hypothetical protein PB2503_02397 [Parvularcula bermudensis
           HTCC2503]
 gi|303298958|gb|ADM08557.1| hypothetical protein PB2503_02397 [Parvularcula bermudensis
           HTCC2503]
          Length = 130

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/118 (65%), Positives = 98/118 (83%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V+IVEDNELNMKLF DL+E  GY  LQ  NG EAL+LAR H+PD+I+MDIQL E SGL
Sbjct: 12  RTVLIVEDNELNMKLFHDLLEVQGYRVLQAVNGAEALDLARAHRPDLILMDIQLPEKSGL 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++T++IK D EL+ IPVIAVTAFAMK DE RIR+GGCE YI+KPIS+ +F++ +K+Y+
Sbjct: 72  DVTREIKADDELRAIPVIAVTAFAMKSDEARIREGGCEDYIAKPISVPVFLDKVKRYL 129


>gi|304391594|ref|ZP_07373536.1| response regulator [Ahrensia sp. R2A130]
 gi|303295823|gb|EFL90181.1| response regulator [Ahrensia sp. R2A130]
          Length = 126

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/122 (72%), Positives = 103/122 (84%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKVMIVEDNELNMKLF DL+E  GY  +QT NG+ AL+LAR+H PD+I+MDIQL E+S
Sbjct: 1   MAKKVMIVEDNELNMKLFNDLLEAQGYETIQTSNGLSALDLARKHYPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED  L  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+E +K Y+
Sbjct: 61  GLEVTKWLKEDDSLARIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVMRFIELVKTYL 120

Query: 121 GE 122
           GE
Sbjct: 121 GE 122


>gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 229

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++ I+ED +    + +  +E  GY      +G E L L +    D++++DI L +  G
Sbjct: 1   MQRIGIIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDLDLVLLDIMLPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI K+I++    +E+P+I ++A A + D+    + G + Y++KP  +   M  +K  + 
Sbjct: 61  LEICKEIRQ---TKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 730

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN +N ++ R+L+ + G +  Q  +G EA+E  +Q    +I+MD+++  + G+
Sbjct: 481 KQVLVVDDNTINREMIRELLSSLGMVISQVSSGEEAIEAVKQQAFSLILMDLRMAGMDGI 540

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK +++      +PVIA++A       E   + G   Y+ KPI     ++ I  ++  
Sbjct: 541 EATKALRKLPNGSHVPVIALSANTSASMAETCTQAGMNDYLPKPIDFRRLIQIIANHLAA 600

Query: 123 A 123
           +
Sbjct: 601 S 601


>gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24]
 gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24]
 gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|256015256|ref|YP_003105265.1| transcriptional regulatory protein OmpR, putative [Brucella microti
           CCM 4915]
 gi|255997916|gb|ACU49603.1| transcriptional regulatory protein OmpR, putative [Brucella microti
           CCM 4915]
          Length = 238

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D++    L  + ++  G       NG E L++  +   D++I+D+ L   SG+
Sbjct: 5   AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + ++       +P+I +TA A   D+    + G + YI+KP      +  I+  +  
Sbjct: 65  EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121


>gi|239947824|ref|ZP_04699577.1| regulatory component of sensory transduction system [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922100|gb|EER22124.1| regulatory component of sensory transduction system [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 450

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 65/118 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D+I++D+ + E+ G
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D E   IPV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  FEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 68.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDIINEYTPDLVIISSMLENDDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGD--EERIRKGGCEAYISKPISLSIFMETIKKYI 120
            I+  ++  +E+    V+ ++     G     +  + G   Y   PI  S  +  I+  +
Sbjct: 211 RISVILRGKAEISG--VVIISQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268

Query: 121 GE 122
             
Sbjct: 269 RR 270


>gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
 gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  K+++VED E         +   GY      +G EALE     +  +I++DI +  +
Sbjct: 1   MKNFKILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMIPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G+E+ ++I++      +P+I +TA +   D+      G   Y++KP ++   +  I+ Y
Sbjct: 61  NGIEVCRRIRQ---FSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIRVY 117

Query: 120 IGE 122
             E
Sbjct: 118 ERE 120


>gi|303246217|ref|ZP_07332497.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302492280|gb|EFL52152.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 300

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV+D   N +L    +    Y  L   +GMEALE+    +PD+I++DI +  + G 
Sbjct: 5   KKILIVDDMRANTRLLAKKLSGE-YECLTATSGMEALEVVHAQQPDLILLDILMPGMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  +Q+K+D   ++IPVI +T+     DE +    G   YI KP  + I    I+ +I
Sbjct: 64  ETCRQLKDDERSRKIPVIFITSLDEDEDEAKGLDLGAVDYIRKPFRMPIVKARIRNHI 121


>gi|148550789|ref|YP_001260228.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148503208|gb|ABQ71461.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 1143

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 69/126 (54%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56
            ++++IVED+  N+     ++E  G I    RNG EA++   Q         D+++MD+ +
Sbjct: 1018 RRILIVEDDVRNVYSLSSVLEPRGAIVQIARNGQEAIDALAQAGDDAAKAVDLVLMDVMM 1077

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
              + GL  T++I+ D    ++P++ +TA AM  D++R  + G   Y++KPI +   +  +
Sbjct: 1078 PVMDGLTATREIRADPRWTKLPIVMLTAQAMPDDQQRCLEAGANDYMAKPIDVDKLLSLV 1137

Query: 117  KKYIGE 122
            + ++  
Sbjct: 1138 RVWMPR 1143



 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 4   KVMIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +V++V ED+ +  ++  +L    G+  +   N  +A++ A + KP  I++D+ L + SGL
Sbjct: 750 RVLLVIEDDAVFAQIVCELSRELGFQCVIAGNAEDAIKHAHEFKPSAIVLDLGLPDQSGL 809

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            +  ++K D E + IP+  ++A       +     G   Y  KP+      + ++
Sbjct: 810 TVLDRLKHDDETRHIPIHVISAADQS---QTALSLGAVGYHIKPVKREELAQVLE 861



 Score = 80.2 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 47/95 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++V+IVED+ +       L+ +     +      E LE  R+   D +++D+ L + SG
Sbjct: 871 MRRVLIVEDDAVQRDAVGKLLGSDDVETIGVGTAAECLEQLRRETFDCMVLDLTLPDTSG 930

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            ++ + + ++ +    PVI  T   +  D+E+  +
Sbjct: 931 FDLLETLSQEGDHGFPPVIVYTGHDLSADDEQRLR 965


>gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301]
          Length = 229

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E        ++   GY      +G    +LA     D++I+D  L E SGL+
Sbjct: 2   RILLVDDEEALTAPPHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + +++    +++PV+ +TA     D  +    G + Y+ KP  L   +  ++  +  +
Sbjct: 62  LCRSVRQRD--RQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRS 119


>gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D +  +   +  +E  GY+  +  +G EA+ELAR+  P+++I+DI L  + G E
Sbjct: 10  TILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +   IK+  +     VI +TA     D+ +    G + Y++KP S    +  I   I  +
Sbjct: 70  VCSIIKKSIKTS---VIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNS 126


>gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8]
 gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans
           A8]
          Length = 242

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IVED+    +L R  +   GY      +G E +    +   D +++D+ L  I GL
Sbjct: 5   RRVLIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLEEGSWDALVLDLMLPGIDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI K+ +  +     P+I  +A + +       + G + Y++KP S+   +  ++  +  
Sbjct: 65  EICKRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRR 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 1368

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 55/113 (48%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +DN    +    L++ +GY      +G+ ALE  R   PD++I D+ +  + GL + 
Sbjct: 621 LVADDNADMREYLTRLLDGAGYQVDTVDDGLAALEAVRADAPDLVISDVMMPGLDGLGLV 680

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             ++ D     +PV+ ++A A +       + G + Y+ KP + +  +  ++ 
Sbjct: 681 AALRTDPRTVSVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRA 733


>gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I ED +   +L    +    Y   +  NG+EAL++  ++  D+ I+DI +  + G ++
Sbjct: 3   ILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKNDIDLAILDIMMPGLDGFKV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+E S    IPVI +TA     ++      G + YI KP S    +  +K     
Sbjct: 63  LKKIREKS---NIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRR 117


>gi|298385839|ref|ZP_06995396.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298261067|gb|EFI03934.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1376

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  +   NG E  + A    PD+I+ DI +  + G+ + 
Sbjct: 1111 LIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQALNRIPDIIVSDIMMPVMDGITLC 1169

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED     IPVI +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1170 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1224


>gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 237

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++VED+          +   G+      NG E  ++A  +K D++I+DI L E++GL
Sbjct: 6   AKILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNGL 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI K ++E++    +P++ +TA     +       G + Y++KP      +  +K  +  
Sbjct: 66  EICKAVREENT--HVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRR 123

Query: 123 A 123
           +
Sbjct: 124 S 124


>gi|288940787|ref|YP_003443027.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896159|gb|ADC61995.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1377

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +V++ EDN +N ++  +L+ + G       NG  ALE+A     D+I+MD+Q+  + GL
Sbjct: 1012 ARVLLAEDNPINREVALELLNSVGLRVETAENGQVALEMAADGDYDLILMDVQMPLMDGL 1071

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              T+ I+      + P++A+TA A + D     + G   ++ KP+      + + +++ E
Sbjct: 1072 SATRAIRALPNWCDKPILALTANAFEEDRRACLEAGMNDFVPKPVEPLDLFDALLRWLPE 1131


>gi|260904234|ref|ZP_05912556.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 281

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED+    ++ R+ +  +G++  +  +G +ALE   +  PD++I+D +L  I G 
Sbjct: 54  RRLLLVEDDPTVAEVARNYLRNAGFLVDEVADGFQALESVAELVPDLVILDRKLPGIDGT 113

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++       +PV+ +TA +   D     + G + Y++KP S    +  ++  +  
Sbjct: 114 EVCRRLRS---FTAVPVLMLTALSATEDRIDGLESGADDYLTKPFSPRELVLRVQSILKR 170


>gi|253569176|ref|ZP_04846586.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251841195|gb|EES69276.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1376

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  +   NG E  + A    PD+I+ DI +  + G+ + 
Sbjct: 1111 LIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQALNRIPDIIVSDIMMPVMDGITLC 1169

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED     IPVI +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1170 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1224


>gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D+    +L R  +   GY  L   +G EA +L  Q    + I+D+ +   +
Sbjct: 1   MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+E     ++PVI +TA     D+E+    G + Y++KP   +  +  IK  +
Sbjct: 61  GWELCREIRE---FYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 243

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED     +     +E   Y       G +ALE  R  + D+II+D+ L  I G  
Sbjct: 7   HILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVMLPGIDGFA 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++      +PV+ +TA + + D      GG + Y++KP +L+ F+  +   +  +
Sbjct: 67  VCREIRQLD--ARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRRS 124


>gi|170722660|ref|YP_001750348.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida W619]
 gi|169760663|gb|ACA73979.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida W619]
          Length = 643

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 69/117 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N  +   ++ + G       +G++A+E   Q     I+MD +L ++ G E
Sbjct: 516 RILLVEDNPVNQSVIEAMLRSLGLEVSVAHDGIQAVEKVSQQHFAAILMDCRLPQVDGYE 575

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+      ++P+IA+TA A++GD ER    G + Y+SKP+  +   + +++++
Sbjct: 576 ATRRIRLLPNGGKLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTDLQQVLQRWL 632


>gi|29348458|ref|NP_811961.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340362|gb|AAO78155.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1376

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  +   NG E  + A    PD+I+ DI +  + G+ + 
Sbjct: 1111 LIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQALNRIPDIIVSDIMMPVMDGITLC 1169

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED     IPVI +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1170 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1224


>gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 64/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+I +D+          +E+ GY  L   +G +ALE+   ++P ++I DI +  ++
Sbjct: 1   MSLTVLIADDDPGIRLSVSRFLESEGYCCLMAGDGAQALEMIHHYQPHLLITDIAMPNMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI++   L+ +PVI +TA     +  R  + G + Y++KP  L+     ++  +
Sbjct: 61  GYELVRQIRQHPSLRLLPVIYLTARTELEERIRAYRTGGDVYLAKPFDLNELAAVVRNLL 120

Query: 121 GEA 123
             A
Sbjct: 121 DRA 123


>gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 246

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +    L    +   G+       G++AL+ A +  PD++I+D+ L +I G E
Sbjct: 7   RVLVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVMLPDIDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++  +      PV+ +TA     D+ R    G + Y++KP SL+  +  +   +  
Sbjct: 67  VARRLGREGV--PTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRR 123


>gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
 gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
          Length = 221

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     ++    ++ + Y      +G EAL+     + D+II DI +  ++G E
Sbjct: 2   RILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEYDLIITDIMMPNVNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++ +      PVI +TA     D+      G + YI KP      +  I+  +  
Sbjct: 62  FIEKLRNNKN--NTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118


>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 235

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KV++V+D E   +L    ++  GY  +   +G  AL++ R  KPD++++D+ +  + G 
Sbjct: 8   AKVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + ++A     D+      G + Y++KP SL   +  +   +  
Sbjct: 68  GLLRRLRADGI--DAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRR 125

Query: 123 A 123
           +
Sbjct: 126 S 126


>gi|163850400|ref|YP_001638443.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|218528960|ref|YP_002419776.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium chloromethanicum CM4]
 gi|254559654|ref|YP_003066749.1| response regulator [Methylobacterium extorquens DM4]
 gi|163662005|gb|ABY29372.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|218521263|gb|ACK81848.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium chloromethanicum CM4]
 gi|254266932|emb|CAX22731.1| response regulator (CheY-like); diguanylate cyclase (GGDEF) and
           response regulator receiver domains [Methylobacterium
           extorquens DM4]
          Length = 457

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D   N++L    +    +  +   NG +AL +  + + DV+++D+ +  + 
Sbjct: 1   MSARVLIVDDLYPNVRLLETKLSLEYFDVVVAMNGPDALAICEKGECDVVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     +PV+ VTA     D  R    G + +++KPI  +  M  ++  +
Sbjct: 61  GFEVCRRLKANPATAHLPVVIVTALDQPADRLRGLDAGADDFLTKPIDDTALMTRVRSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 1/112 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED    +      +    +      +   AL  A +   D+ ++ + L+   GL
Sbjct: 156 ARILLVEDRASAIDRISTALSQH-HQVTVETDPHRALVRAPEEGFDLALVSLDLEGFDGL 214

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            +  Q++     + + +I +     K    R  + G   Y+ +P+  +  + 
Sbjct: 215 RLCSQLRSLERTRSMALIMLGEMHEKTRITRGLEFGVNDYLLRPVDRNELIA 266


>gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 232

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++ +D++L +      ++  GY  L+  NG+EALE   + +  +I+MDI + ++ 
Sbjct: 1   MTYTVLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEALEAIEKQEVHLILMDIMMPQLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL  T +I+++   + IP+I ++A +   D+      G + YI+KP +    +  ++  +
Sbjct: 61  GLSATLKIRQE---KNIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 1800

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G
Sbjct: 1679 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1738

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++ 
Sbjct: 1739 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1798


>gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 223

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|90410641|ref|ZP_01218657.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum 3TCK]
 gi|90328882|gb|EAS45166.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum 3TCK]
          Length = 257

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L +  +    Y      +G E  +  R +  D+I++D+ L    GL 
Sbjct: 11  HLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGDEMEQCLRDNTIDLIVLDLMLPGKDGLT 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++       IPVI +TA   + D+    + G + Y+ KP +    +  IK  I  
Sbjct: 71  LCRELR---VHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARIKAVIRR 126


>gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 223

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
 gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
          Length = 229

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K++IV+D++  ++L    I   GY  ++  +G  AL         D+II+DI + E+ G+
Sbjct: 2   KILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTIPDIDLIILDIMMPEMDGM 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+++++S+   IP+I +TA     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  QVVKKLRKESQ---IPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118

Query: 123 A 123
           +
Sbjct: 119 S 119


>gi|312960966|ref|ZP_07775471.1| two-component response regulator [Pseudomonas fluorescens WH6]
 gi|311284624|gb|EFQ63200.1| two-component response regulator [Pseudomonas fluorescens WH6]
          Length = 413

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 56/119 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D     KL   L++  GY      +G EAL L  Q  PD+I++D+ +  + G 
Sbjct: 6   ATLLIVDDEPQVRKLLETLLQHEGYQTRSASSGEEALTLVAQQPPDLILLDVMMPGMDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  ++K +     IP+I ++A    G        G E +I+KP+        ++  + 
Sbjct: 66  EVANRLKSNPATSNIPIIMLSALNEPGARVSGLHTGAEEFINKPVEHIELWLRVRNLLR 124


>gi|260642598|ref|ZP_05416521.2| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260621410|gb|EEX44281.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1310

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 61/113 (53%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++V+DN       +  +       +   +G EAL+L R H PD+I+ D+ +  ++G E
Sbjct: 1059 TVLVVDDNPDLTDFLKKSLGEYFKRVVIASDGAEALQLIRSHTPDIIVSDVMMPRMNGYE 1118

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + K IKED  +  IP+I +TA   +  +    K G +AY++KP  + + ME I
Sbjct: 1119 LCKSIKEDITISHIPIILLTARDDQQSQLSGYKNGADAYLTKPFEIEMLMEII 1171


>gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550]
 gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550]
          Length = 243

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     ++  G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 77  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131


>gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 835

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D  +N +L   ++E  G +     NG EA++ + +   D+I MD Q+ E+ G E
Sbjct: 710 RVLLVDDTPVNRRLAGKMLEKLGLVVDIAVNGREAVDKSAELSYDLIFMDCQMPEMDGFE 769

Query: 64  ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T +I+         P+IA+TA AM  D +R    G + YISKP+       T+ +++
Sbjct: 770 ATTRIRSREAGSAHTPIIAMTASAMPEDRKRCIDVGMDDYISKPVRQDTLRSTVSRWL 827



 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57
             + IV+D+E+N ++  +L+++         +   AL   R         D+ ++D  L 
Sbjct: 520 AHIAIVDDSEINRRVLVELMQSWNSRVSPYEDAQSALVALRAAQSRGTPYDIAVIDSDLP 579

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++SG E+ ++++ D  LQ++ ++ +T+   +GD  R ++ G   Y++KP    + +ET+ 
Sbjct: 580 DLSGAELGRELRRDPALQDLRMVLLTSTPRQGDGRRYQELGFSGYLTKPTKRGVLLETLS 639

Query: 118 KYIG 121
             +G
Sbjct: 640 TVLG 643


>gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 1711

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +DN         L+    Y      +G +AL+ A    PD+++ D+ +  + G+ 
Sbjct: 627 RVLVADDNADMRGYLLRLLGPH-YDVRAVADGRQALDAALADPPDLVVSDVMMPGLDGMG 685

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IG 121
           +   ++ +     +PV+ ++A A +         G + Y+ KP S    +  ++ +  +G
Sbjct: 686 LLAALRAEPRTARVPVVLLSARAGEEAAVEGLAAGADDYLVKPFSAQELLARVRAHLELG 745

Query: 122 EA 123
            A
Sbjct: 746 RA 747


>gi|198275803|ref|ZP_03208334.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135]
 gi|198271432|gb|EDY95702.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135]
          Length = 1393

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVED +         + +  +  L   NG EAL+L   H PD+++ DI + E++G+ +
Sbjct: 1134 ILIVEDEDEIRNYLLTELGSH-FRVLSCSNGKEALDLIMHHMPDLVLSDIMMPEVNGITL 1192

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K++ +   IPVI +TA   + D       G +AYI+KP +L I + TI+  I
Sbjct: 1193 LRKLKQNIKTNHIPVILLTAKNSEKDYIEGLSLGADAYIAKPFNLDILITTIENLI 1248


>gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 403

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ +    +   G+  L  +NG +AL++    +PD+I++D+ +  +SG E+
Sbjct: 12  ILIVDDILENISVLFRFLGNEGFKVLVAQNGQQALKIVDLTRPDIILLDVMMPGLSGFEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K     Q+IP+I +TA A   D+    K G   YI+KP      +  I  ++
Sbjct: 72  CQQLKSQQNTQDIPIIFMTALADTVDKVNGFKLGAADYITKPFQHEEVLVRINAHL 127


>gi|28869414|ref|NP_792033.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852655|gb|AAO55728.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331018585|gb|EGH98641.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 641

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G++A+  A      +I+MD +L  + G 
Sbjct: 513 RSILLVEDNPVNRTVVQAMLHNLGCKVDVAVDGVDAVMKAGAGNYALILMDCRLPVMDGY 572

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A+ GD +   + G + Y+ KP   +   + +++++
Sbjct: 573 EATRKIRQLSGLERIPIIALTANALHGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 630


>gi|330447113|ref|ZP_08310763.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491304|dbj|GAA05260.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L +D++E  G+  ++  NG + LE       D+I++D+ +  ++G
Sbjct: 1   MAKILLVDDDVELTALLKDILELEGFDVVEANNGQQGLEKVDS-SIDLILLDVMMPVMNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++E       PV+ +TA   + D     + G + Y+ KP S    +  ++  + 
Sbjct: 60  TEMLRRLRES---HTTPVMMLTAKGDEIDRILGLELGADDYLPKPFSDRELLARMRAVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++VED+++   L    ++  GY  +   +G  A E   ++ P ++I+D+ L +IS
Sbjct: 1   MKQLVLVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLKYSPCLVILDLMLPKIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+      E+ +I VTA      +    K G + Y++KP S +  M  I+  +
Sbjct: 61  GEEVCQWIRAQER-NEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|262383009|ref|ZP_06076146.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
 gi|262295887|gb|EEY83818.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
          Length = 1354

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN   ++  R  + ++ Y  L   +G +A +L  +  PD++I D+ +    G+ 
Sbjct: 1107 TLLVVDDNADFLEFMRLSLSSA-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1165

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK D     IPVI +TA + K  +    + G + YISKP ++ + +  ++  I
Sbjct: 1166 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1222


>gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 225

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D    +   R  +E  G+      NG++ L +A++H+ D I++DI +  ++G  
Sbjct: 2   RILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIMMPGMNGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   +    P++ +TA   + D+      G + ++SKP S ++ +  ++  +  
Sbjct: 62  VCERLRAAEDW--TPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRR 118


>gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 367

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D E  ++  +  +E  G+I     +G EA+ LA++  P +II+DI L  I+G E
Sbjct: 149 HILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGYE 208

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +IK+        +I +TA     D  +    G + Y+ KP S    +  I   +  +
Sbjct: 209 VCSEIKKWVNAS---IIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNS 265


>gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 273

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K+++ +D+   ++     +   G+  ++  +G+EALEL + H+ +++I+D+ +  + G
Sbjct: 43  MQKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDG 102

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +++E      IP+I ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 103 IRTTLKVRE---TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLR 159

Query: 122 E 122
            
Sbjct: 160 R 160


>gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 234

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    + + GY   +  N    LE+  +    ++++DI +  ++GLE+
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILAKEDIHLVLLDIMMPGMNGLEM 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+E++    IP+I ++A +   D+      G + Y+ KP +       +K ++  
Sbjct: 66  CKKIRENN---NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRR 120


>gi|213968170|ref|ZP_03396315.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301383824|ref|ZP_07232242.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058498|ref|ZP_07250039.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302133390|ref|ZP_07259380.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213927150|gb|EEB60700.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 641

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VEDN +N  + + ++   G       +G++A+  A      +I+MD +L  + G 
Sbjct: 513 RSILLVEDNPVNRTVVQAMLHNLGCKVDVAVDGVDAVMKAGAGNYALILMDCRLPVMDGY 572

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++ S L+ IP+IA+TA A+ GD +   + G + Y+ KP   +   + +++++
Sbjct: 573 EATRKIRQLSGLERIPIIALTANALHGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 630


>gi|170748283|ref|YP_001754543.1| response regulator receiver protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654805|gb|ACB23860.1| response regulator receiver protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 123

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/120 (67%), Positives = 104/120 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E +GY  L+T +G+EA+ELAR H PD+I+MDIQL E+S
Sbjct: 1   MKKTVLIVEDNELNMKLFNDLLEANGYATLKTAHGIEAIELARAHHPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED +L+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T++ Y+
Sbjct: 61  GLEVTKWLKEDDDLKGIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRAYL 120


>gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 229

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G EA+    +  PD++++D+ L  +SG
Sbjct: 1   MTHVLIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLMLPGVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K I+  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEICKTIRAKSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
 gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
          Length = 1325

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 72/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K+++VEDNE+N ++   L+E +G       NG EALE       D+++MD+Q+  + G+
Sbjct: 992  QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              TK I+ +   + +P++A+TA AM  D ER  + G   ++SKPI +  F + +K+++
Sbjct: 1052 TATKYIRTNGRWKNLPIVAMTANAMATDIERCLQVGMNGHLSKPIEVDKFYQVLKQFL 1109



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 52/114 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +    D++  D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E+  ++K            VTA+    + +       +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAI 965


>gi|260768957|ref|ZP_05877891.1| response regulator [Vibrio furnissii CIP 102972]
 gi|260616987|gb|EEX42172.1| response regulator [Vibrio furnissii CIP 102972]
          Length = 241

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
            +++V+D+    +L  + +  SG+      +G  AL         PD++++D+ L    G
Sbjct: 5   HILVVDDDIEICELLDEYLSKSGFSVATVSDGR-ALAQYLTDHGYPDLVLLDVMLPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+ DS    +P+I +TA + + D+      G + YI+KP S    M  IK  + 
Sbjct: 64  FTLCQKIRRDS---NVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
 gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
          Length = 243

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     ++  G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 77  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131


>gi|226310397|ref|YP_002770291.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093345|dbj|BAH41787.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I+ED     +L RD  E +G+      +G E L LA      +II+D+QL  + 
Sbjct: 1   MSSRILIIEDETTIAQLERDYFELNGFQVDLCHSGSEGLPLAINGDYSLIIVDLQLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+  QI++   ++E+P++ V+A   + D+ R    G + YI+KP S S  +   K ++
Sbjct: 61  GFELCSQIRQ---VKEVPILIVSAKKEEIDKIRAFNLGADDYITKPFSPSELVARAKAHL 117

Query: 121 GE 122
             
Sbjct: 118 TR 119


>gi|170743275|ref|YP_001771930.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168197549|gb|ACA19496.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1857

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G   L    G EA+ +   +    +++MDI + E+ G
Sbjct: 1737 RTVLLVDDDARNIFALSSVLERRGMRVLTATTGREAISIIEARADIAIVLMDIMMPEMDG 1796

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E  + I+ +   + +P++A+TA AMKGD E+  + G   Y++KP++    +  ++ ++ 
Sbjct: 1797 YETMQVIRANPAFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRLWLH 1856

Query: 122  E 122
             
Sbjct: 1857 R 1857



 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED+    ++   L    G+  L    G +AL LAR+H+P  I +D+ L ++ G  + 
Sbjct: 1472 LIVEDDPHYARVLAQLARDGGFKVLIASRGADALALARRHRPTAISLDVFLPDMLGWTVL 1531

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
              +K+D   + IPV  VT   +  D       G  A++SKP +       +++ 
Sbjct: 1532 SHLKQDPATRHIPVQIVT---LDEDRRHGLARGAYAFLSKPTTSEDLGAALRRI 1582



 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN         L+       +    G EAL   R    D +++D++L ++SG 
Sbjct: 1591 RRLLIVEDNPAERMSVATLLGHEDIAIVTAETGEEALAALRAGAFDCVVLDLKLPDMSGF 1650

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ ++++ED  L ++PV+  T  A+  +E+        + + K + S    ++
Sbjct: 1651 EVLERLREDHALADLPVVVFTGRALSPEEDARLHALARSVVVKGVESPERLLD 1703


>gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|290770180|gb|ADD61939.1| putative protein [uncultured organism]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  ++     A     G E L+  R+ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|149376013|ref|ZP_01893779.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
 gi|149359650|gb|EDM48108.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
          Length = 238

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+    +L  + +   GY  +    G        + + D+I++D+ L    G  +
Sbjct: 8   ILVVDDDLAIRELLHEHLSRVGYDVMTAAEGDSMRRTLSEARVDLIVLDVMLPGDDGFTL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+E S+   +P+I +TA + + D     + G + Y++KP S       +K  +  +
Sbjct: 68  CREIREHSQ---VPIIMLTASSDETDRVVGLEIGADDYLAKPFSARELQARVKALLRRS 123


>gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 224

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++   K     ++T  Y+      G    E  +  + D+I++D+ L +++G+ 
Sbjct: 2   RILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVMLPKLNGIN 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++      +PV+ +TA     D+      G + Y+ KP  L      I+  +  
Sbjct: 62  LCQRIRQAGYT--MPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRR 118


>gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1]
 gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis
           MR-1]
          Length = 241

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    +I++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQQGST--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|39936994|ref|NP_949270.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39650851|emb|CAE29374.1| sensor histidine kinase with multiple PAS and a response regulator
           receiver domain [Rhodopseudomonas palustris CGA009]
          Length = 1021

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +DN         L+  + Y      +G+ ALE  ++ +PD+++ D+ +  + GL 
Sbjct: 644 HILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDGLG 702

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++ D  + ++PVI ++A A +  +    + G + Y+SKP S    +  ++  +  A
Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTA 762


>gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      + PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALR---TAHQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|119490557|ref|ZP_01622999.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453885|gb|EAW35041.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1056

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 64/118 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V++   N  L   L+   G++  +  NG+EA+     H PD+I MDI++  + G +
Sbjct: 852 RILVVDEIPENRLLVSQLLTPLGFVIFEAENGLEAITQWEHHSPDLIWMDIRMPVMDGYQ 911

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+QIK     +   +IA+TA A+  DE+ I   GC+  + KP      +E I  ++G
Sbjct: 912 ATQQIKAKPAGKNTIIIALTASALSQDEQAILDAGCDDILHKPFQAIELLEKIATHLG 969


>gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 229

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++ + G++     +G  AL   R+++PD++++D+ L  +S
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + I+ +S    +P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GIDVARSIRGESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|110597968|ref|ZP_01386249.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340417|gb|EAT58906.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 231

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 59/117 (50%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED+    KL    +E +GY    + +G  A E   +   D+I++DI L  ++G E+ 
Sbjct: 7   LVVEDDRNLSKLLEFNLERAGYACKISESGENAFEQLSRKCFDLILLDIMLPGMNGFELC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++IK+    ++IP+I +TA   + D     + G + Y+ KP S       I+  +  
Sbjct: 67  QKIKQHQIYKDIPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAVLKR 123


>gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     IP++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRAEGHT--IPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|330501332|ref|YP_004378201.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
 gi|328915618|gb|AEB56449.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
          Length = 245

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    +L     +  GY      N  +   L  +   +++++D+ L    GL 
Sbjct: 13  KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLPGEDGLS 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++E +   +IP+I +TA   +    +  + G + Y++KP +    +  IK  +  
Sbjct: 73  ACRRLRESNN--QIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRR 129


>gi|239908802|ref|YP_002955544.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239798669|dbj|BAH77658.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 384

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IV+D  +N+ +    +  + +  +   +G  A++LA   +PD+I++DI +  + G
Sbjct: 1   MGKVLIVDDERINIHILSAAL-KNDHSVIIAIDGTTAIDLALSERPDLILLDIMMPGMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E   ++K     ++IP+I +TA +    E    + G   YI+KP ++++    +K ++
Sbjct: 60  YEACSKLKASPATRDIPIIFITALSDAKSESHGLECGAIDYITKPFNVALVKSRVKNHV 118


>gi|260642573|ref|ZP_05416441.2| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
 gi|260621480|gb|EEX44351.1| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
          Length = 1353

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L+  NG EALE  + ++ D+I+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNILEAGNGEEALEKLKGNEVDIIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SLSI    I+  + 
Sbjct: 1163 LCKNVKQNIPTCHIPVIMLSAKSETKDQMEGLQMGADDYIPKPFSLSILTTKIQNMMR 1220


>gi|224537041|ref|ZP_03677580.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521349|gb|EEF90454.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1439

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDNE       +++    Y  ++  NG   LE  +   PD++I DI +  + G+E+
Sbjct: 1176 VLVVEDNEELRHFMVNILRKD-YHVIEAENGKTGLEKIKLKIPDLVISDIMMPCLDGIEL 1234

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K+D  +  IP + ++A A   D  +  + G + YI+KP S       I   +
Sbjct: 1235 LEEVKKDYNVSHIPFVLLSAKATLDDRIKGLEYGADDYITKPFSSGYLRARISSLL 1290


>gi|153807471|ref|ZP_01960139.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185]
 gi|149129833|gb|EDM21045.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185]
          Length = 1516

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +GME    A ++ PD+II D+ + E  G+E+T
Sbjct: 1239 LLVEDNQELREFLRSIFTPV-YRVVEAADGMEGWSKALKYLPDIIISDVMMPEKDGIEMT 1297

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1298 RELRADMMTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1352


>gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 224

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +      +  +E   Y      +G E L+LA +   D+I++D  L +  GL 
Sbjct: 2   RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++E   L   P++ +TA     D       G + Y++KP + +  +  ++  +  +
Sbjct: 62  VLKELRERKNL--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRS 119


>gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby]
 gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
 gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Corby]
 gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I++D+     L    +E  G+  +   +G   ++ A     D II+D+ L +++
Sbjct: 1   MSSSILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVMLPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K I+E  E    PV+ +TA     D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GFEVLKAIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus
           amyloliquefaciens LL3]
          Length = 250

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D+    +L R ++E SG+   +  +G  A++L      D+II+D+ + ++ G E+
Sbjct: 29  ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 88

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++      +IP++ +TA     D+ +    G + Y+ KP         +K  +  
Sbjct: 89  SEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKR 143


>gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++ +DN+   ++ + L+   GY  +   NG EA+EL  +    ++I+D+++ + S
Sbjct: 1   MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDE-SIGLVILDVEMPKKS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ +  +I++ S    +P++ +TA+  + D+      G + YI+KP S S  +  +K  +
Sbjct: 60  GIVVCSEIRQKSF---VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALL 116

Query: 121 GEA 123
             A
Sbjct: 117 RRA 119


>gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella violacea
            DSS12]
 gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella violacea
            DSS12]
          Length = 1235

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 75/116 (64%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY      NG  A+++  +   D ++MDIQ+  + GL  
Sbjct: 1113 VLLVEDNFINQQVATELLKSAGYEVDVADNGQIAIDMIAEKDFDAVLMDIQMPVMDGLTA 1172

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK+I++   LQE+P+IA+TA AM GD E+    G  A+I+KPI L+   +T+  +I
Sbjct: 1173 TKEIRKHFSLQELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLNELFDTLSYWI 1228



 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K ++V+DN   ++++  ++    +      NG EAL    +   D++++D  + E+ G++
Sbjct: 968  KTLVVDDNPTALQIYATVMRDFHFEVDTAANGSEALYKLEKSSVDLLLLDWMMPEMDGIQ 1027

Query: 64   ITKQI-K--EDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + +++ +   D  L + P+ I +T +A +  +E   +    A + KP   S   + I
Sbjct: 1028 VIEELDRMVADGRLDKRPIVIMMTGYAAEPLKEDADRSNIYAMLQKPFKASALFDEI 1084


>gi|326318213|ref|YP_004235885.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375049|gb|ADX47318.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 361

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D   N+ +  D ++ SGY  L   +G  AL  A Q  PDV+++D  +  + G E+
Sbjct: 30  VLVVDDVPDNLAVLHDALDESGYTVLVATSGETALARAAQAMPDVVLLDAMMPGMDGFEV 89

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121
            +++K       IP+I +T        E     G   Y++KPI     +  +  ++    
Sbjct: 90  ARRLKAQPATAHIPIIFMTGLTETEHLEAALAAGGVDYVTKPIKPREVLARMHVHLQGAR 149

Query: 122 EA 123
            A
Sbjct: 150 RA 151


>gi|218245591|ref|YP_002370962.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|257058637|ref|YP_003136525.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
 gi|218166069|gb|ACK64806.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|256588803|gb|ACU99689.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
          Length = 121

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 72/121 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V++VED+ +  ++   ++E +G+  +   +G +AL+   +  PDVI++DI +  ++G
Sbjct: 1   MRAVLLVEDSPVQQEMISGILEDNGWRVIIAEDGFKALKEIEKFSPDVIVLDIVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D +L+ +PV+  ++   + D     K G +AY++KP      + TIKK + 
Sbjct: 61  YEVCRRLKSDPKLKNVPVVICSSKGEEFDRYWGIKQGADAYVAKPFEPIELVGTIKKLLR 120

Query: 122 E 122
           +
Sbjct: 121 K 121


>gi|168182838|ref|ZP_02617502.1| regulatory protein VanR [Clostridium botulinum Bf]
 gi|237794279|ref|YP_002861831.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657]
 gi|182674012|gb|EDT85973.1| regulatory protein VanR [Clostridium botulinum Bf]
 gi|229263114|gb|ACQ54147.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657]
          Length = 236

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D++      +  +    Y  L+  NG +A+    +++  +I++D+ +  + G
Sbjct: 1   MYNILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNALHENEIHLILLDVMMPIMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+       +P++ ++A +   D+      G + YI+KP +       +K  + 
Sbjct: 61  IEVAQKIR---TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 435

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   +++  GY   +  NG  A+   +   PD++++DI++ ++ G ++
Sbjct: 13  ILIVDDTPNNLRVLSSILQEQGYEIRKAVNGKMAIRSVQADPPDLVLLDIKMPDLDGYQV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             Q+K     ++IPVI ++A     ++    + G   YI+KP  +   +  +K ++
Sbjct: 73  CSQLKAIEATRDIPVIFLSALDDVFNKVLAFQVGGVDYITKPFQVEEVLVRVKTHL 128


>gi|34497033|ref|NP_901248.1| sensory box/GGDEF family protein [Chromobacterium violaceum ATCC
           12472]
 gi|34102890|gb|AAQ59254.1| probable sensory box/GGDEF family protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 712

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D    + +   L+ T GY     ++G EAL+LA +H PD+I++D  +  + GL +
Sbjct: 7   ILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHPPDLILLDFSMPGMDGLAV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +   ++IP++ +++ +    +      G   +I KP   S  +  +  ++
Sbjct: 67  CRELKLNPRTRDIPILFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNTHL 122


>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi
           103S]
 gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi
           103S]
          Length = 224

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IV+D    ++L    +   G+      NG E L+ AR  +PD +I+D+ +  + G  + 
Sbjct: 2   LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFGML 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           ++++ D    + PV+ +TA     D+      G + Y++KP SL   +  ++  +  A
Sbjct: 62  RRLRADGV--DAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA 117


>gi|288925550|ref|ZP_06419483.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine
           kinase/response regulator, hybrid (one-component system)
           [Prevotella buccae D17]
 gi|288337766|gb|EFC76119.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine
           kinase/response regulator, hybrid (one-component system)
           [Prevotella buccae D17]
          Length = 865

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVEDN+   +  ++ ++   Y   +  NG EALEL  Q   D+I+ D+ +  + GL+
Sbjct: 619 TLLIVEDNDDFRRFIKESLQEE-YTVFEAGNGQEALELTAQESIDMIVSDVMMPVMDGLQ 677

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +  +IK D     IPVI +TA           K G + YI+KP ++ I    I+K 
Sbjct: 678 LCHRIKTDINFSHIPVILLTARTADEHVISGLKEGADEYITKPFNMEILKIKIRKL 733


>gi|167580218|ref|ZP_02373092.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           TXDOH]
 gi|167618327|ref|ZP_02386958.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           Bt4]
 gi|257139875|ref|ZP_05588137.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           E264]
          Length = 241

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +   +  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|322807669|emb|CBZ05244.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D++  ++  +  +    Y    + NG EAL+  R  + ++I+MDI + ++ 
Sbjct: 1   MSYKMLIVDDDKTIVEFLQIFLIKEEYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K+I+    L  IP+I +TA   + D+ +    GC+ YI+KP  L      +   +
Sbjct: 61  GFEAIKRIR---RLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D     +   D +ET  Y      +G EAL      +PD+I++D+ +  + GL 
Sbjct: 9   TLLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAVADLRPDLILLDVMMPALDGLA 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    P++A+TA     D       G + Y+ KP  L      I+  +  
Sbjct: 69  VCRALRSAGD--RTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRR 125


>gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D           ++  G+ +     G EAL L      D++++D+ L +ISG +
Sbjct: 2   RILIVDDEPAISDTLAYALQAEGFASDCCTLGAEALALLDAGGHDLVVLDVGLPDISGFD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ +S   ++PVI +TA + + D     + G + Y++KP S    +  ++  +  +
Sbjct: 62  VCRLLRRNS---DVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRRS 118


>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 719

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
            ++++ EDN  N       +   G+      NG+EAL+L       DVI+MD+Q+ E+ G
Sbjct: 598 ARILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALDLLDNSGPFDVILMDVQMPEMDG 657

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE TK+I+E     EIP+IA+TA+AM+GD E+    G +AY SKP+++   ++ I K + 
Sbjct: 658 LEATKKIREQGN--EIPIIALTAYAMEGDREKFLSNGMDAYSSKPVNIDELVQIIGKLVP 715

Query: 122 E 122
            
Sbjct: 716 R 716


>gi|170288268|ref|YP_001738506.1| response regulator receiver protein [Thermotoga sp. RQ2]
 gi|170175771|gb|ACB08823.1| response regulator receiver protein [Thermotoga sp. RQ2]
          Length = 122

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D+ +  K+    ++  GY  ++  NG  ALE   +  PD+I++DI +  + 
Sbjct: 1   MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALERLSEFTPDLIVLDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++E  E + IPVI +TA   + DE      G    + KP S S F+E +K  +
Sbjct: 61  GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120

Query: 121 GE 122
            E
Sbjct: 121 NE 122


>gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           KV++V+D     KL +D +  S Y  L+  NG +A+++   Q    +II+D+ + ++ G 
Sbjct: 5   KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+I++     ++P+I +TA + + DE    + G + YISKP S  I +  ++  +  
Sbjct: 65  QVCKEIRK---YSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|315126945|ref|YP_004068948.1| response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Pseudoalteromonas sp.
           SM9913]
 gi|315015459|gb|ADT68797.1| response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Pseudoalteromonas sp.
           SM9913]
          Length = 331

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IV+D   N+K+ R+++  S Y     ++G  AL+L     P +I++D+ + +++G 
Sbjct: 8   ARILIVDDEPANLKVMREVL-ASNYRLSFAKSGAVALQLIENDPPKLILLDVMMPDMNGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K + +   IPVI VTA   + DE      G   YI+KPIS +I    +K ++
Sbjct: 67  EVCKILKANPKTAHIPVIFVTALTQEQDESEGFSLGAVDYITKPISPAIVKARVKTHL 124


>gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1823

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1703 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDGY 1762

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++ 
Sbjct: 1763 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMQQWMR 1821


>gi|295087985|emb|CBK69508.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1316

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN       +  +       +   +G+EAL+L + H PD+II D+ +  ++G E+
Sbjct: 1060 VLVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTKSHAPDIIISDVMMPRMNGYEL 1119

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             K IKED  +  IP++ +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 1120 CKNIKEDITISHIPIVLLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179

Query: 123  A 123
            +
Sbjct: 1180 S 1180


>gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
 gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
          Length = 241

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP+I +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQQGNT--IPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|294643204|ref|ZP_06721031.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|292641440|gb|EFF59631.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
          Length = 1316

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN       +  +       +   +G+EAL+L + H PD+II D+ +  ++G E+
Sbjct: 1060 VLVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTKSHAPDIIISDVMMPRMNGYEL 1119

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             K IKED  +  IP++ +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 1120 CKNIKEDITISHIPIVLLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179

Query: 123  A 123
            +
Sbjct: 1180 S 1180


>gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
 gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++VED E         +E  GY  +  ++G EAL L  +    +I++D  L   
Sbjct: 1   MQKVKILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVTLILLDWMLPGY 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + ++I++     ++PVI +TA +   D       G + YI+KP  +   +  I+  
Sbjct: 61  DGLTVLRRIRQ---TSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|237712907|ref|ZP_04543388.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262409652|ref|ZP_06086192.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229447026|gb|EEO52817.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262352505|gb|EEZ01605.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1316

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN       +  +       +   +G+EAL+L + H PD+II D+ +  ++G E+
Sbjct: 1060 VLVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTKSHAPDIIISDVMMPRMNGYEL 1119

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
             K IKED  +  IP++ +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 1120 CKNIKEDITISHIPIVLLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179

Query: 123  A 123
            +
Sbjct: 1180 S 1180


>gi|298530225|ref|ZP_07017627.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509599|gb|EFI33503.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 850

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63
           ++IVED ++N+ L R +++  G+  L   +G EALE+ + ++   +I+MD+ +    G E
Sbjct: 728 ILIVEDEKINLMLIRRMLQKKGFNVLTAMDGREALEVLKSNQDISLILMDVMVPVHDGYE 787

Query: 64  ITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T+ I++     L+++P++AVTA A     +   + G  AY+SKP+  S  M+ I++Y+ 
Sbjct: 788 LTRMIRKGDFDGLKQVPIVAVTALADAASRQHCFEAGMNAYLSKPVDNSELMKMIRRYLA 847

Query: 122 EA 123
            +
Sbjct: 848 RS 849


>gi|71909432|ref|YP_287019.1| Cache sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71849053|gb|AAZ48549.1| Cache sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 759

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 67/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ ED  +N ++ + ++   G       +G+ AL LA +    +I+MD+Q+  ++GL
Sbjct: 636 ARILLAEDEPINREVAQIMLNDVGMAVDVAEDGIAALRLAGEVDYALILMDMQMPNMNGL 695

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + T+QI++    +E P++A+TA A   D+ER  + G   +I+KP+      + +  ++  
Sbjct: 696 DATRQIRQLPRHKETPILAMTANAFVEDKERCFEAGMNDFIAKPVEPESLYDKLLHWLSR 755


>gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 223

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++VED      + +  +E + Y    + +G+E  E  +    D+II+DI L +ISG
Sbjct: 1   MKKILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTYDLIILDIMLPKISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+++S    +P+I +TA     ++ +      + YISKP S  I ++ ++  + 
Sbjct: 61  FAVCEMIRKES---HVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED        +  ++ + +  ++   G E +E AR+HKP+V+++DI L  + G
Sbjct: 1   MDKILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K +++  E   + +I +TA +   D+    + G + YI KP +       IK  + 
Sbjct: 61  LEVCKTLRQ--EFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999]
          Length = 241

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    +I++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP+I +TA   + D     + G + Y+ KP +    +   K  +  
Sbjct: 67  ICRRLRQKENT--IPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123


>gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c]
 gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 240

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   +  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     EIP++ +TA   + D     + G + Y+ KP +    +  +K  +  
Sbjct: 67  ICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRR 123


>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
            271]
 gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
            271]
          Length = 1040

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++VEDN +N ++   +++  G       NG EAL        DV++MDIQ+  + GL
Sbjct: 912  ARILLVEDNIVNQQVAMLMLKKFGLHVDGVANGKEALSALMSLPYDVVLMDIQMPVMDGL 971

Query: 63   EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T++I+        IP+IA+TA A + D E     G   Y+SKP++     +T++K++ 
Sbjct: 972  EATRRIRNGECGTSAIPIIAMTAHAKQSDRELCLATGMNDYVSKPVNQQALADTLEKWLP 1031

Query: 122  E 122
            +
Sbjct: 1032 K 1032



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQ 57
           +K +IV+DN  N ++    + + G    ++ NG +AL++            + ++D+Q+ 
Sbjct: 762 QKALIVDDNATNREILSKRLLSWGMRPEESDNGQDALDMLIRASTSTDAFTIAVIDMQMP 821

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E+ G+ + K I+E   L  + +I +T+    G+     K G  A++ KP+ +      +
Sbjct: 822 EMDGVMLGKAIREHEALMSLQMIMMTSLGNNGESSLAEKAGFSAWLQKPVQIKKLKNAL 880


>gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 224

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++D      L    +  SG+      +G EA  +   +  D++I+DI +    G E+
Sbjct: 4   ILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIMMPGEDGFEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+  S    +P+I ++A   + D+ +  + G + YI KP S    +  +   +  
Sbjct: 64  CSRIRGKS---NVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRR 118


>gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++   Y   +     EAL      + D+ I+DI L ++S
Sbjct: 1   MQEKILVVDDEQEISDLLELYLQNENYSVFKFYTAKEALACIETTEIDIAILDIMLPDMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+ +      P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GFTLCQKIRVNHAY---PIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 271

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     ++  GY  L+  +G EALE+ ++++  ++IMD+ +  + G
Sbjct: 42  MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDG 101

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E+S    IP+I ++A     D+      G + Y+ KP +    +  +K  + 
Sbjct: 102 IRATLKIREES---SIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLR 158

Query: 122 E 122
            
Sbjct: 159 R 159


>gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1821

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1701 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1760

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++ +
Sbjct: 1761 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMRD 1820


>gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis]
 gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis]
          Length = 213

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  D ++  GY+ L   +G+ AL   ++ +PD+I++D  +  + G E 
Sbjct: 1   ILIVDDTPDNLALLSDALDEVGYMVLVALDGLSALNRIQRRRPDLILLDAMMPGLDGFET 60

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++IK D+   +IPV+ +TA        +    G   Y++KPI+    +  +  ++  A
Sbjct: 61  CQRIKADAATADIPVLFMTALTDSEHVVKGFAAGGIDYVTKPINTEEVLARVASHLRTA 119


>gi|91788128|ref|YP_549080.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697353|gb|ABE44182.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 243

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 3/124 (2%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   +++IVED     +L    +   G+  +  ++ + A        PD I++D  L  
Sbjct: 1   MKHQARILIVEDEPAIAELIAVNLRHGGFEPVVVQDSVAAQRELDAVLPDAILLDWMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SGL + +  ++    + IP++ +TA   + D+      G + YI+KP S    +  I+ 
Sbjct: 61  QSGLALARHWRKQVRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 119 YIGE 122
            +  
Sbjct: 121 VLRR 124


>gi|88861266|ref|ZP_01135898.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
 gi|88816747|gb|EAR26570.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
          Length = 896

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN LN K+   ++   G       NG+EALE+  Q K D+++MDIQ+  + GL 
Sbjct: 780 RILVAEDNPLNQKVISAILINKGCTPDIAENGLEALEMLAQRKYDLVLMDIQMPLLDGLA 839

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+QI+ + + + +PVI ++A AM  D       G   Y+ KP+  +   + I KY+
Sbjct: 840 TTEQIRLNPQFKNLPVIGLSANAMDSDVVNALAVGMNDYVVKPLDPNKLFKAILKYV 896


>gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4]
 gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++++     IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQNGNT--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM
            4166]
          Length = 1170

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
            + +++V+D+  N+      +E  G +    RNG+EA++  +     D+++MDI + E+ G
Sbjct: 1046 RTILVVDDDVRNVFALTSALEQKGALVEIARNGLEAIDKLQHDETIDLVLMDIMMPEMDG 1105

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
                ++I++++   ++P+IAVTA AMK D++R  + G   Y++KPI L      I+ ++ 
Sbjct: 1106 FTAMQEIRKEARFAKLPIIAVTAKAMKDDQDRCLRAGANDYLAKPIDLDRLFSLIRVWLP 1165

Query: 122  E 122
            +
Sbjct: 1166 K 1166



 Score = 95.2 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED     ++ RDL     Y  L ++N  +  + A Q+KPD I++D++L + SGL +
Sbjct: 780 VLVIEDEPQFARILRDLAHELEYSCLLSQNADDGFDTAVQYKPDAILLDMRLPDHSGLTV 839

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            +++KE+S  + IPV  V+   ++  +E   + G   Y  KP +     + 
Sbjct: 840 LERLKENSATRHIPVHVVS---VEDRKEAALQMGAVGYAMKPTTREELKDV 887



 Score = 87.9 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 47/93 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L  +    LIE           G +ALEL R    D +I+D++L ++ G 
Sbjct: 900 KRILLVEDDALQRESMSRLIEDVDIEITAVEFGEQALELLRSTVFDCMIIDLKLPDMDGS 959

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIR 95
           E+ +++ ++      PVI  T   +  DEE   
Sbjct: 960 ELLERMAKEDICSFPPVIVYTGRNLTRDEEAAL 992


>gi|269126865|ref|YP_003300235.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
 gi|268311823|gb|ACY98197.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
          Length = 1303

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60
            +KV+IV+D+  N+     ++E  G   L   +G   ++L +++ PD  +++MD+ +  + 
Sbjct: 1179 RKVLIVDDDVRNVFALASVLEGYGMEVLYAEDGQAGIDLLQRN-PDVALVLMDVMMPGLD 1237

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G   T+ I+   +  ++P+I +TA AMKGD E+    G   YI KP+ +   ++ ++ ++
Sbjct: 1238 GYATTEAIRGMPQFTDLPIIVITAKAMKGDREKSLASGASDYIPKPVDVDHLLDIMRTWL 1297

Query: 121  GEA 123
              +
Sbjct: 1298 RRS 1300


>gi|227536214|ref|ZP_03966263.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300772173|ref|ZP_07082043.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|227244111|gb|EEI94126.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300760476|gb|EFK57302.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 234

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED E  ++  +  +E  GY      +G +AL++ ++ + ++II+D+ + EI G 
Sbjct: 5   QRILLVEDEEHLLEAIKLNLELEGYRVTTATDGKKALKVFKEERFNLIILDVMIPEIDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + I+   +  E+P++ +TA     D     K G + Y+ KP +L   +  +   +  
Sbjct: 65  QVAETIR--LQNSEVPIMFLTAKNSSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRR 122


>gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05]
 gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
 gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05]
 gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 268

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157


>gi|326384127|ref|ZP_08205810.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197287|gb|EGD54478.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D    ++  R  +   G+       G +ALE A +  PDV+++D+ L ++ G  
Sbjct: 6   HVLVVDDEPQLLRALRINLRARGFEVTTAATGAQALEAASKRPPDVVVLDLGLPDMDGFT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++       +PVI ++A     D+ +    G + Y++KP  +  F+  ++  I  
Sbjct: 66  VLAGLR---GWTSVPVIVLSARTDAADKVQALDAGADDYVTKPFGMEEFLARLRAAIRR 121


>gi|240145086|ref|ZP_04743687.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257202757|gb|EEV01042.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291537822|emb|CBL10933.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D +  +   +  +   GY   +  NG EALE+ ++    +++MDI + E+ G
Sbjct: 1   MYSILVCDDEKDIVSALKIYLMADGYQVFEAYNGKEALEVLKEQDIHLVLMDIMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +    +I+E      +PVI +TA +   D+      G + YI+KP +       +K  + 
Sbjct: 61  IAAMVKIRE---TSNVPVILLTAKSEDTDKVLGLTVGADDYITKPFNPIEVQARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|166368645|ref|YP_001660918.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166091018|dbj|BAG05726.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 378

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+ +        ++   Y      +G E L+ A Q KP +II D  +  I G
Sbjct: 1   MVRILVIDDDGVIQTFLSRALQKE-YEVFVASDGEEGLKQAGQIKPAMIICDWMMPGIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           LE+ +QIK + +L     I +T+    GD  +    G + ++ KPI ++     ++ 
Sbjct: 60  LEVCRQIKLNPQLSTTFFILLTSLGSVGDRVKGLDAGADDFLCKPIEINELRARVRA 116


>gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++ +DN+   ++ + L+   GY  +   NG EA+EL  +    ++I+D+++ + S
Sbjct: 1   MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDE-SIGLVILDVEMPKKS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ +  +I++ S    +P++ +TA+  + D+      G + YI+KP S S  +  +K  +
Sbjct: 60  GIVVCSEIRQKSF---VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALL 116

Query: 121 GEA 123
             A
Sbjct: 117 RRA 119


>gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 229

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I+ED      L +D +E SG+      +G+  L+ A     D+ I+D+ L  I G
Sbjct: 1   MSKVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+E+   +  P++ V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKQIREE---KNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D +  +GY+ L   +G+ AL    + +PD+I++D  +  + G E 
Sbjct: 13  VLIVDDTPDNLAMLSDALNDAGYMVLVALDGLSALNRIERRRPDLILLDAMMPGLDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++IKE     +IPV+ +TA        +  + G   Y++KPI     +  +  ++  +
Sbjct: 73  CRRIKEHPANADIPVLFMTALTESRHVVQGFEVGGSDYVTKPIQTDEVLARVAAHLRTS 131


>gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 233

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IV+D++  + +  + +  +G++     +G+ A+E  R  +PD+I++D  L  I GL
Sbjct: 9   RRVLIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRMLPGIDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T++++    + + P+I +TA     D     + G + Y++KP S    +  I+  +  
Sbjct: 69  EVTRRVRA---ICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRR 125

Query: 123 A 123
           A
Sbjct: 126 A 126


>gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica
            KT99]
 gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica
            KT99]
          Length = 1235

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 74/116 (63%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY      NG  A+++  +   D ++MDIQ+  + GL  
Sbjct: 1113 VLLVEDNVINQQVATELLKSAGYEVDVADNGQIAIDMLAEKDFDAVLMDIQMPVMDGLTA 1172

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I++   L E+P+IA+TA AM GD E+    G  A+I+KPI LS   +T+  +I
Sbjct: 1173 TREIRKHFSLHELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLSELFDTLSFWI 1228



 Score = 99.4 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K ++V+DN   ++++  ++    +      NG EAL    +   D++++D  + E+ G++
Sbjct: 968  KALVVDDNPTALQIYSTVMRDFHFEVDTAANGSEALYKLEKSSVDLLLLDWMMPEMDGIQ 1027

Query: 64   ITKQI-K--EDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +  ++ +   D  L + P+ I +TA+A +  +E + +    A + KP   S     I
Sbjct: 1028 VIDELDRMVADGRLDKRPIVIMMTAYAAEPLKEDVDRSNIYAMLQKPFKASALFNEI 1084


>gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 231

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D    + L    +  +G+  L    G +AL   R+  PD++++D+ L ++SG
Sbjct: 1   MTSVLLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRRRIPDLVVLDLMLPDVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QIK D+  + +PV+ +TA   + D     + G + Y++KP S+   +  +K    
Sbjct: 61  TEVCRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALAR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|94971086|ref|YP_593134.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553136|gb|ABF43060.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 365

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
            V++V+D   N+ L   L++   Y       G  AL++A+  + PD+I++DI + E+ G 
Sbjct: 11  TVLVVDDTPDNLALVGGLLKDL-YRVKVANGGARALKIAQADNPPDLILLDIMMPEMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +Q+K D   + IPVI +TA +   DE+   + G   YI+KP+S  I M  +K ++
Sbjct: 70  EVCRQLKADPHTRGIPVIFLTAKSQVEDEQMGFELGAVDYITKPLSPPIVMARVKTHL 127


>gi|90419567|ref|ZP_01227477.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
 gi|90336504|gb|EAS50245.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
          Length = 126

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/123 (72%), Positives = 109/123 (88%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K VMIVEDNELNMKLFRDL+E  GY  +QTR+G+ A ELAR+H+PD+I+MDIQL EIS
Sbjct: 4   MAKTVMIVEDNELNMKLFRDLVEAHGYRTVQTRSGLTATELAREHRPDLILMDIQLPEIS 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+Q+KED EL  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS++ F+ETI+ ++
Sbjct: 64  GLDVTRQLKEDPELFRIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVTKFIETIRSFL 123

Query: 121 GEA 123
           G+A
Sbjct: 124 GDA 126


>gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 233

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L +  ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+   +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 258

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 24  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 83

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 84  TRRIRQEGITA--PVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 139


>gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291]
 gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291]
          Length = 247

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D++    L +  ++     A     G E L+  R+ +  ++++D+ +  + G
Sbjct: 18  MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I+++     +P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 78  FETLEEIRKE---YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 134

Query: 122 E 122
            
Sbjct: 135 R 135


>gi|254720504|ref|ZP_05182315.1| Probable transcriptional regulator ycf27 [Brucella sp. 83/13]
 gi|265985535|ref|ZP_06098270.1| two-component system response regulator [Brucella sp. 83/13]
 gi|306838128|ref|ZP_07470985.1| transcriptional regulator ycf27 [Brucella sp. NF 2653]
 gi|264664127|gb|EEZ34388.1| two-component system response regulator [Brucella sp. 83/13]
 gi|306406865|gb|EFM63087.1| transcriptional regulator ycf27 [Brucella sp. NF 2653]
          Length = 238

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D++    L  + ++  G       NG E L++  +   D++I+D+ L   SG+
Sbjct: 5   AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + ++       +P+I +TA A   D+    + G + YI+KP      +  I+  +  
Sbjct: 65  EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121


>gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
 gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
          Length = 234

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    + + GY   +  N    LE+  + +  ++++DI +  ++GLE+
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILEKEEIHLVLLDIMMPGMNGLEM 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+E++    IP+I ++A +   D+      G + Y+ KP +       +K  +  
Sbjct: 66  CKKIRENN---NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120


>gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 212

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           KK+++++D+   + L +D +E  GY  +   NG EAL++  Q + PD+II D+ + E+ G
Sbjct: 10  KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALDILEQQQIPDMIICDVMMPEMDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               +++++D+    IP + ++A     D  +  + G + Y+ KP      +  ++  + 
Sbjct: 70  YAFVEKLRDDARTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129

Query: 122 E 122
            
Sbjct: 130 R 130


>gi|145225002|ref|YP_001135680.1| multi-sensor signal transduction histidine kinase [Mycobacterium
           gilvum PYR-GCK]
 gi|145217488|gb|ABP46892.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium gilvum
           PYR-GCK]
          Length = 1361

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 57/116 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ +DN    +    L+ + GY      +G +ALE  R   PD++I D+ +  + GL
Sbjct: 604 ARVLVADDNADMREYLGRLLRSDGYAVEAVVDGWQALEAIRAEPPDLVISDVMMPRLDGL 663

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +  +++ D     +PV+ ++A A +       + G + Y+ KP + +  +  ++ 
Sbjct: 664 GLVAELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRA 719


>gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt
           domain-containing protein [Geobacter bemidjiensis Bem]
 gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator lipoprotein, HAMP and
           Hpt domain-containing protein [Geobacter bemidjiensis
           Bem]
          Length = 818

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VEDN +N ++ R L+E+ G       NG+ AL+  ++   D+I MD Q+  + GL
Sbjct: 563 RQVLLVEDNVVNQEVGRGLLESLGCRVKVAENGLAALKELQRGAFDLIFMDCQMPVLDGL 622

Query: 63  EITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++  E     +P+IA+TA+AMKGD E     G + Y+SKP S     ++I++ +
Sbjct: 623 EATRRIRQREEGSSARVPIIALTAYAMKGDREACLAAGADDYLSKPFSREQLSKSIERRL 682

Query: 121 G 121
           G
Sbjct: 683 G 683



 Score = 54.0 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 31/81 (38%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+ ++  D+    +   +L+   G       +   AL        D+++MD  +    G
Sbjct: 426 SKRALVATDDPELQETLLELMGGLGMDLDCVGDAPGALCRLVAAPFDLVLMDHCVAGTDG 485

Query: 62  LEITKQIKEDSELQEIPVIAV 82
           L +   I+  +    + ++ +
Sbjct: 486 LALAAAIRSVAVGHSVRLVLL 506


>gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1444

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 73/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++VEDN+LN ++  +L+  +G++     +G  AL+  +++  D+++MD+Q+  + G+
Sbjct: 1108 ARILLVEDNDLNQEVAAELLADAGFVVDIADDGAIALDKVQRNTYDIVLMDMQMPVMDGV 1167

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T++I++     ++P++A+TA AM+ D++  R  G   +++KPI        + ++I
Sbjct: 1168 TATREIRKLGRFDDLPIVAMTANAMRRDQDLCRDAGMNDFVAKPIDPDQLWAALVRWI 1225



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
            +V++V+DN+    +  DL+ +  +   +  +G  A+   ++         ++++D ++ +
Sbjct: 958  RVLVVDDNDNARAVLCDLLTSMTFEPSEVASGPAAVAEVKRAADAGIPYALVLVDWRMPD 1017

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            + G++  + I+     Q   ++ VTA+  +    +I + G +  + KP+S SI  +T+ +
Sbjct: 1018 MDGIDTARHIRALGVEQAPRLLMVTAYGREEVLNQINEAGIDDVLIKPLSASILFDTVMR 1077

Query: 119  YIG 121
              G
Sbjct: 1078 MFG 1080


>gi|71909161|ref|YP_286748.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71848782|gb|AAZ48278.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 982

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 66/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ ED  +N ++ + L+E          NG  A+ +A  +  D+I+MD+Q+  + GL
Sbjct: 862 RRILLAEDEPINREIAQMLLEAVDLDVEMAENGEIAVRMALANCYDLILMDMQMPVLDGL 921

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T++I+E      +P++A+TA A   D+ +    G   +I+KP+   +  +T+ K++  
Sbjct: 922 AATRRIRELPACAAVPILAMTANAFAEDKAQCLAAGMNDFIAKPVVPEVLYDTLLKWLRR 981


>gi|154492762|ref|ZP_02032388.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184]
 gi|154087067|gb|EDN86112.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184]
          Length = 1346

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++ EDN    +     +E   +  L+  NG++A     +  PD+++ DI + +  GL+
Sbjct: 1092 TLLLAEDNPDVRRYICKHLEPY-FDVLEAENGVDAFNKIAETLPDLVVSDIMMPKKDGLQ 1150

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +  +IK+D     IPVI +TA +M    +   + G + YI KP ++ + +  I+  +
Sbjct: 1151 LCSEIKQDLRTGHIPVIIITAKSMVMHIKEGFQCGADDYIVKPFNMEVLLCRIRNIL 1207


>gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS]
 gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS]
          Length = 1610

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            KKV+IV+D+  N      ++E      +   NG EALEL  QH    +++MDI + E+ G
Sbjct: 1488 KKVLIVDDDPRNTFALATILEDKNMEVIAGENGHEALELLEQHEDIAIVLMDIMMPEMDG 1547

Query: 62   LEITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             E  +QI+       +++P+IA+TA AMKGD+ +  + G   Y+SKP+     +  ++ +
Sbjct: 1548 YEAMRQIRAQKNRFRRQLPIIALTAKAMKGDKTKCIEAGANDYLSKPVDTDKLISLMRVW 1607

Query: 120  I 120
            +
Sbjct: 1608 L 1608



 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED+     L  +L   +G+  L   +G+  L++A Q+KP  II+D+ L  + G ++ 
Sbjct: 1223 LIVEDDRKFSTLILELARETGFKCLVAEDGITGLQMAEQYKPHAIILDVGLPNLDGWKVM 1282

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +Q+K + + + IPV  ++AF         +K G   Y+ KP+++    ET +K 
Sbjct: 1283 EQLKNNPDTRHIPVHFISAFDQS---LEAKKMGAIGYLMKPVNMEQLGETFQKI 1333



 Score = 57.1 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K V+IV DNE + +    L+             + AL+  ++   D +I+D+ +++ +G 
Sbjct: 1342 KNVLIVVDNETHQQQILSLVSGENIQTSLAVTTITALQHIKETLFDCVILDMDIEQHAGG 1401

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            ++ + ++    L ++PVI  T   +  +EE +     +    K + S    ++
Sbjct: 1402 QLLEHMQAIGGLCQVPVIVYTERDLTAEEEALLMRCADDLPLKSVSSPERLLD 1454


>gi|71909179|ref|YP_286766.1| phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
 gi|71848800|gb|AAZ48296.1| Phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
          Length = 228

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 60/112 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +L    ++ +G++ ++  +  EA    R   PD++I+D  L   S
Sbjct: 1   MTPTILVVEDEPAIQELVTINLKHAGFLVVRAGSAEEAESAIRAALPDLVILDWMLPGQS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           G+ + K+I+ D   +E+P+I +TA   + D+ +  + G + YI+KP S    
Sbjct: 61  GVALAKKIRADERTRELPIIMLTARVHEEDKVQGLEAGADDYITKPFSPKEM 112


>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
            wolfei subsp. wolfei str. Goettingen]
 gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
            wolfei str. Goettingen]
          Length = 1442

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++VEDNE+N K+   ++E  G       +G EAL+  +Q   D++ MD Q+ E+ G E
Sbjct: 1212 RFLLVEDNEMNQKIIVKMLEKRGMYCDLACSGAEALKALQQKDYDIVFMDCQMPEMDGYE 1271

Query: 64   ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T +I++   E +   ++A+TA AM+GD E+  + G + YISKP+   +    I++Y   
Sbjct: 1272 TTARIRQMEGEERHTIIVAMTANAMEGDREKCLQAGMDDYISKPVDFQLLFNIIEQYTAR 1331



 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQE 58
             +V+IV+DN  N K+ R  +E +  +  ++ +  +A+ +          DV+I+D Q+  
Sbjct: 1063 ARVLIVDDNSSNRKIIRTYLEDAQCLVEESDSAEKAITILLSASAVKSFDVVIVDFQMPA 1122

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            ++G E+   +K     + I +I +T+ A KGD  R ++ G   Y++KP+     ++ I  
Sbjct: 1123 MNGHELAAALKAIPSTRAIHLIMLTSAAQKGDARRAKEHGFSGYLTKPVKRDELLQCISI 1182

Query: 119  YIG 121
             +G
Sbjct: 1183 VLG 1185


>gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 241

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED+E+ M      +   G+   +     E L +AR+ +PD+I++DI L   SG+ +
Sbjct: 8   ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIMLPGESGIRV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+E+ E  ++ +I +TA   + D+ R  + G + Y++KP  +   +  I  ++  +
Sbjct: 68  CQRIREEDE--DVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRS 124


>gi|332829569|gb|EGK02215.1| hypothetical protein HMPREF9455_01485 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1347

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++IVEDN    +  R  +   GY  L   +G+E ++L  + + D+II DI +  + G+
Sbjct: 1096 QTILIVEDNPDMQEFIRKNL-ILGYNVLLANDGIEGIKLLEKEEIDLIISDIMMPNMDGI 1154

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-- 120
            E   ++K       IP+I +TA      +    + G +AYI KP S+S     I+  +  
Sbjct: 1155 EFCNKVKNSLLWNHIPLIMLTAKTNIASKIEALETGADAYIEKPFSISFLSVQIRNLLES 1214

Query: 121  GEA 123
              +
Sbjct: 1215 RRS 1217


>gi|328946836|gb|EGG40973.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 234

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K +++ ED +   ++    +   GY      +G EA++LA+++  D++I+DI +   +
Sbjct: 1   MMK-ILLAEDEQQLSRVLETAMIHEGYHVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I++        VI +TA +   D+      G + Y++KP SL   +  ++   
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus
           thermophilus ND03]
          Length = 229

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED     +     ++  GY  +   NG E LELA +   D+I++D+ L E+ 
Sbjct: 1   MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++++   ++  ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQQE---KDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 231

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    + +    +   G+      +G EAL   RQ +P ++++D+ L ++ G E
Sbjct: 7   RVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPDMEGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++   +E   +P++ +TA     D  R    G + Y++KP SL   +  I+  +  
Sbjct: 67  VARRL--GAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRR 123


>gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 241

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++ED     +L    +   GY  +   +G    E A +   D+I++D+ L  ++
Sbjct: 1   MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI  +++  SE  + PVI +TA   + +  +  K G + YI+KP  ++  +  +   +
Sbjct: 61  GFEIMSKLR--SEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
 gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDSSIQEMVEKYLTKEGFQITIASDGEEGVLTFLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
 gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
          Length = 235

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 70/125 (56%), Gaps = 7/125 (5%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQLQ 57
           +K+V+I++D++    L +  IE     A+   +G+E L++ ++++      +II+D+ + 
Sbjct: 1   MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            ++G ++ K+I+E   +  IPV+ +TA + + D+    + G + Y++KP S++     + 
Sbjct: 61  YMNGFQVLKKIRE---VSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVH 117

Query: 118 KYIGE 122
             I  
Sbjct: 118 SLIRR 122


>gi|163802258|ref|ZP_02196153.1| osmolarity response regulator [Vibrio sp. AND4]
 gi|159174063|gb|EDP58873.1| osmolarity response regulator [Vibrio sp. AND4]
          Length = 146

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +    +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNANNT--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|77919611|ref|YP_357426.1| two component hybrid sensor response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545694|gb|ABA89256.1| response regulator receiver sensor signal transduction histidine
           kinase [Pelobacter carbinolicus DSM 2380]
          Length = 391

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D  + ++L   ++ + G+  L   +G E LE+  Q  PD++++D  +  + 
Sbjct: 1   MSSRILVVDDEAIILQLATMVLTSRGFEVLTAHSGQECLEIVEQESPDLVLLDYMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + +++     +  VI +T    +     + K G   YI KP      +E I+  +
Sbjct: 61  GMTTLRHLRQ--AHPDTYVIMLTGKGSEQIAVDVMKAGAADYILKPFKNQDLVERIENVL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|329954319|ref|ZP_08295412.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
 gi|328527847|gb|EGF54837.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
          Length = 1362

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++ EDNE   +  ++ +E   Y  L   NG +AL+L+ +  PD+I+ DI +  + GLE
Sbjct: 1108 TVLLAEDNEEVRQYVKESLEPYFY-VLDVGNGKDALDLSLEKYPDLILSDIMMPGMDGLE 1166

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +  ++K+D +L  IPVI +TA +M    +     G + YI KP S+ + +  I   +
Sbjct: 1167 LCSRVKQDLQLGHIPVILMTAKSMVVHIKEGFSVGADDYIVKPFSMDVLICRINNIL 1223


>gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59
           +K+V++ ED +   +     +  SGY  +    G +AL+   +++   DV ++DI +  I
Sbjct: 1   MKRVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGGFDVALLDIMMPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+++ K+I+E +    + +I ++A + + D+      G + YI+KP S+S  +  +   
Sbjct: 61  DGMQVCKKIREKNN--SVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAV 118

Query: 120 IGE 122
              
Sbjct: 119 CRR 121


>gi|295690575|ref|YP_003594268.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756]
 gi|295432478|gb|ADG11650.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756]
          Length = 1128

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 69/126 (54%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56
            +++++VED+  N+    +++E  G +    RNG EA++   +       + D+++MD+ +
Sbjct: 1003 RRILVVEDDIRNVYSLTNVLEPRGAVVEIARNGQEAIDALGRAAQDPSEEIDLVLMDVMM 1062

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
              + GL  T+ I+ D    ++P++ +TA AM  D+ R  + G   Y++KPI +   +  +
Sbjct: 1063 PVMDGLTATRAIRNDPRWSKLPILMLTAKAMPDDQARCIEAGANDYMAKPIDVDKLLSLV 1122

Query: 117  KKYIGE 122
            + ++  
Sbjct: 1123 RVWMPR 1128



 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 3   KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++V+ +VED++    + RD+    G+  L      EA++LAR+ KP  +++D+ L + SG
Sbjct: 734 RRVLLVVEDDDTFASIVRDMSREQGFQCLVANTAEEAVKLAREFKPSAVVLDVGLPDESG 793

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           L +  ++K D   + IP+  ++A   +   +     G   Y+ KP+      E +K  
Sbjct: 794 LLVLDRLKRDDATRHIPIHVISA---EDHSQTALSLGAIGYLVKPVKRDDLTEVLKTL 848



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 46/94 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IVED+ +  +    L+ +     +      E LE  ++   D +++D+ L + SG 
Sbjct: 857 RRVLIVEDDPVQREAVGKLLTSGDVETVGVGTAAECLEALKRETFDCMVLDLSLPDASGY 916

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            + + + ++ +    PVI  T   +  D+E+  +
Sbjct: 917 SLLETLSQNGDHAFPPVIVYTGRDLSADDEQRLR 950


>gi|326203229|ref|ZP_08193094.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986487|gb|EGD47318.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D      + +      G+  ++  +GMEA+++ R+ + D+I+MD+ + E+ G
Sbjct: 1   MYKILIVDDEAGIRDIIKKYAVFEGHEVVEAADGMEAIQVCREMEFDIIVMDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+I++       PV+ ++A   + D+    + G + Y+ KP S    M  +   + 
Sbjct: 61  FSACKEIRK---FCMTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVNAIVK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|220905533|ref|YP_002480845.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869832|gb|ACL50167.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 240

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + + +V+D+   + L    ++  G+      NG   +++ R+ +PD+I++D+ L    G 
Sbjct: 5   QTICLVDDDREILDLLSGYLKKHGFEVSCAENGDALMDILRRDRPDLIVLDVMLPGQDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++++      IP+I ++A     D     + G + Y++KP      +  I+  +  
Sbjct: 65  MVCREVRKQWR---IPIIFLSALGESTDRVVGLELGADDYMAKPFEPRELLARIRSVLRR 121


>gi|218780745|ref|YP_002432063.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfatibacillum alkenivorans AK-01]
 gi|218762129|gb|ACL04595.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfatibacillum alkenivorans AK-01]
          Length = 368

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 65/117 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+ V+D E N++L   ++   GY   +  +G EAL++ R+  PDV+++DI +  ++G E
Sbjct: 6   RVLAVDDEERNLRLMEAMLLPMGYEFFKAHSGEEALDIVRETPPDVVLLDIMMPGVNGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K + + + IP+I VTA     D  +    G + +++KP+        +   +
Sbjct: 66  VARRLKANEDTRIIPIIMVTALKEVDDRVKALDAGADDFLTKPVDKLELKARVANSL 122


>gi|317478508|ref|ZP_07937667.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
 gi|316905322|gb|EFV27117.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
          Length = 1326

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN+       + +    Y      NG EAL++  ++  +++I DI +  ++G E
Sbjct: 1078 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSVNIVISDIMMPVMNGTE 1136

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +QIK + +   IPVI +TA   +  +    + G + YI KP    +    I+K+I
Sbjct: 1137 LCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFI 1193


>gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D    +KL    +   GY  L   +G+EALE+ +  K D+II+D+ + ++ G+E
Sbjct: 5   TILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKVDLIILDVMMPQMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I+E++     P+I ++A + + D+      G + Y++KP S    +  IK  +  
Sbjct: 65  ACMKIREEN---NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRR 120


>gi|300868512|ref|ZP_07113131.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333501|emb|CBN58319.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 431

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 64/114 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+DN  N++L  DL+   GY     ++G  ALE     +PD+I++D+ + EI G E
Sbjct: 11  TILVVDDNSENIELLADLLSGVGYQVAIAKSGKAALECLEFLQPDIILLDVMMPEIDGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             +QIK +   ++IP+I +TA +   ++ +    G   YI+KPI     +  I+
Sbjct: 71  TCRQIKSNLANRDIPIIFMTALSDSVNKVKGLSMGAVDYITKPIEYEETLVRIR 124


>gi|270295515|ref|ZP_06201716.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274762|gb|EFA20623.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1336

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN+       + +    Y      NG EAL++  ++  +++I DI +  ++G E
Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSVNIVISDIMMPVMNGTE 1146

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +QIK + +   IPVI +TA   +  +    + G + YI KP    +    I+K+I
Sbjct: 1147 LCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFI 1203


>gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 223

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|160891349|ref|ZP_02072352.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492]
 gi|156858756|gb|EDO52187.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492]
          Length = 1336

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN+       + +    Y      NG EAL++  ++  +++I DI +  ++G E
Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSVNIVISDIMMPVMNGTE 1146

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +QIK + +   IPVI +TA   +  +    + G + YI KP    +    I+K+I
Sbjct: 1147 LCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFI 1203


>gi|34497034|ref|NP_901249.1| two-component hybrid sensor and regulator [Chromobacterium violaceum
            ATCC 12472]
 gi|34102891|gb|AAQ59255.1| probable two-component hybrid sensor and regulator [Chromobacterium
            violaceum ATCC 12472]
          Length = 1234

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 64/117 (54%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++V+D+  N+ +    +E  G       NG  ALE  +    D+++MDI + E+ G 
Sbjct: 1112 RRVLVVDDDPRNLFVITAALERHGAKLNSAVNGRRALEFLQHQSVDLVLMDIMMPEMDGY 1171

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +    I+ +   ++IPV+A+TA A+  + E+I   G + Y+SKP+   + +  +  +
Sbjct: 1172 QAIAAIRANPAWKDIPVVAITAKALPAEREKILATGADDYLSKPVDYDLLVARVAHW 1228



 Score = 99.0 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D+    ++   +    GY  L  ++G E L LA  H P  I++D+ L ++ G ++
Sbjct: 850 ILLIDDDPALGRMLVAMNRRLGYKTLLAQSGGEGLALAAAHGPAGILLDLGLPDMDGAQV 909

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             +IK    L +IPV  V+A         +   G   ++ KP S    +  
Sbjct: 910 LHEIKTRPALADIPVYIVSARDRDE---ALLHQGAIGFLRKPAS-DQLLAA 956


>gi|148263562|ref|YP_001230268.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397062|gb|ABQ25695.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
          Length = 679

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  K++IV+D +  +++ RD +    Y+  +  NG  A+  A++  PD+I+MD+ + E+
Sbjct: 1   MKANKILIVDDQKFALQMLRDTLAPLHYVIEEATNGASAVSKAQEFMPDIILMDLVMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E  ++IK+D     IPVI +TA   K +       G + YI+KP S    +  I+  
Sbjct: 61  DGVEACRRIKQDMHTATIPVIVITASKEKDNLLAAFAAGIDDYITKPFSDKELLARIRAN 120

Query: 120 I--GEA 123
           +   EA
Sbjct: 121 LFKREA 126


>gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 256

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++++++ED     +L    +   G+      +G    E A QH+ D+I++D+ L  ++G
Sbjct: 15  TQRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNG 74

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I ++++ +      P+I +TA   + +  +  K G + YI+KP  +S  +  +   + 
Sbjct: 75  FQILEKLRSNGIT--TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMR 132

Query: 122 E 122
            
Sbjct: 133 R 133


>gi|325914197|ref|ZP_08176549.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325539581|gb|EGD11225.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 238

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+IV+D     +     +   GY  LQ   G EAL L      +++++DI L +  G 
Sbjct: 11  ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEALALLAGQGAELVVLDIGLPDRDGH 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++      +PVI +T  A + ++      G   Y++KP  +   M  I+  + +
Sbjct: 71  EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQ 127

Query: 123 A 123
           A
Sbjct: 128 A 128


>gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++ ED     +L    +E  GY   +  +G +A+EL R  + D+II+DI L   S
Sbjct: 1   MKESILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI ++I+     ++ P++ +TA +   D+      G   YI+KP  +   +  I+  +
Sbjct: 61  GIEILRRIRSKD--KQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAAL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|315446672|ref|YP_004079551.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1]
 gi|315264975|gb|ADU01717.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1]
          Length = 1171

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V++V+D+  N+      ++  G   L  RNG   L+   +H    +++MDI +  + G 
Sbjct: 1041 TVLLVDDDVRNVFSLGSALKRYGITVLPARNGQAGLDALGEHPEVGLVLMDIMMPVMDGY 1100

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  ++I+ +   + +P++A+TA AMKGD ++  + G   Y++KP+ +      ++ ++  
Sbjct: 1101 EAMRRIRAEPRWRHLPIVALTAKAMKGDRQKCLEAGASDYVTKPVDMDQLTSVLRVWLAG 1160

Query: 123  A 123
            A
Sbjct: 1161 A 1161



 Score = 83.6 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IVED+    ++   L   +G+ ++ T +G  AL LA+QH+P  I +DI L +++G  + 
Sbjct: 774 LIVEDDPTFARMLSGLAAEAGFDSVITASGRMALALAKQHQPAAITLDIGLPDMAGWVVL 833

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
             +K D   + IPV  V+      D+ R  + G    ++KP  +S    
Sbjct: 834 DVLKHDLATRHIPVNVVSG---TEDDGRGMRMGAIRTVNKPAEISDLRS 879



 Score = 75.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           + V++ ED+    ++ + +IE+          G + L+        D +++D+ L +I G
Sbjct: 893 RHVLVAEDDANQRQVVKHMIESDDIAITCVGTGAQVLDELSGGTSYDCLVLDLGLPDIDG 952

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
           +++ ++IK+  + + +PVI  T   +   E    +    A + K
Sbjct: 953 IDLIERIKDQLKEKRLPVIVHTGRELTAAETERLENLAAAIVLK 996


>gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 233

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+    +L    +    +      +G  A+      +P+++++D+ L  I G 
Sbjct: 5   QKILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLMLPGIDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S+   +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCREIRTKSQ---VPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRR 121


>gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+    +     +   G+       G E L L    +P+++++D+ L  I+G
Sbjct: 1   MPRVLLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALIGGFRPELVLLDLMLPGING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ ++I+E     ++P+I +TA     D     + G + YI KP    I    IK  + 
Sbjct: 61  VQVCRRIRE---TSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  ++     A     G E L+  R+ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|189464563|ref|ZP_03013348.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM
            17393]
 gi|189438353|gb|EDV07338.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM
            17393]
          Length = 1370

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++I +DNE   +  R  +    Y   +  NG EA E   +  PD +I D+ + E+ G+ 
Sbjct: 1103 RILIADDNEEIRRYIRQELTPD-YHITECNNGQEAFEQIIKDAPDALISDVMMPEMDGMT 1161

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++I+++  +  IPVI +TA   +       +GG +AYI+KP ++ +  +TI+  I
Sbjct: 1162 LCRKIRQNILVSHIPVILLTAKINEESNLEALEGGVDAYITKPFNIDVLKKTIRNVI 1218


>gi|21227170|ref|NP_633092.1| two-component response regulator [Methanosarcina mazei Go1]
 gi|20905506|gb|AAM30764.1| Two-component response regulator [Methanosarcina mazei Go1]
          Length = 123

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/122 (47%), Positives = 85/122 (69%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+K+++IVEDN +NM+L  DL+E  G+   +  +G++ALE   + K D+I++D+QL ++ 
Sbjct: 2   MMKEILIVEDNPMNMELILDLLEFYGHRVTEAEDGIKALERLAEKKFDLILLDMQLPKMD 61

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++IK++    EIPVIAVTA AMKG EE   + GC  YISKPI +  F   I KY+
Sbjct: 62  GLEVLERIKKNPATSEIPVIAVTAHAMKGSEEHFIEMGCVDYISKPIDIHRFRSLIDKYL 121

Query: 121 GE 122
           GE
Sbjct: 122 GE 123


>gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRSEGHT--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|313901323|ref|ZP_07834810.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312953931|gb|EFR35612.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 233

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D++   ++ R L+   GY   + RNG EALE    H  D+ I+DI +  + G E
Sbjct: 5   RILVVDDDKEIREIIRVLLTQEGYDVSEARNGREALEYMNDH-IDLYILDIMMPYMDGYE 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +QI++ S     P++ +TA   + D+ +    G + Y++KP S S  +  +K  +  
Sbjct: 64  LCEQIRKHS---NAPILFLTAKGTQKDKAQGFFKGADDYLAKPFSYSELLVRVKAMLCR 119


>gi|262195772|ref|YP_003266981.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079119|gb|ACY15088.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 876

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +V++VEDN +N K+ R ++   G       NG EAL+L  Q   D++ MD+Q+ E+ G
Sbjct: 624 SARVLVVEDNVVNQKVARRMLSHLGCRVDVAGNGREALQLIDQVPYDLVFMDVQMPEMDG 683

Query: 62  LEITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
              T  ++       + +P+IA+TA AM GD ER    G + Y+SKPI      E + +Y
Sbjct: 684 FAATAAVRARPPTDGKRLPIIAMTARAMSGDRERCLAAGMDGYVSKPIVQEHLGEILLQY 743

Query: 120 IG 121
           +G
Sbjct: 744 LG 745



 Score = 82.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQLQ 57
            V++V+D+ L  +   + +  +   A    +G  A+   R+         D++++D  + 
Sbjct: 465 HVLVVDDHPLQCEALLEELRAADTHADAASSGRSAMIALRRAAAGDGKPFDIVLIDEDMP 524

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR----KGGCEAYISKPISLSIFM 113
           E+  L +   I+ D  +    ++ ++         R        G + Y+ KP+  S  +
Sbjct: 525 EMDALTLAHHIRADPTISGTVLVFLS----TVQRRRGLTELADSGFQGYLRKPVHRSHLL 580

Query: 114 ETIKKY 119
           + +   
Sbjct: 581 DVLATV 586


>gi|325981344|ref|YP_004293746.1| response regulator receiver protein [Nitrosomonas sp. AL212]
 gi|325530863|gb|ADZ25584.1| response regulator receiver protein [Nitrosomonas sp. AL212]
          Length = 134

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VEDNELN ++ + L+E +G +     NG EAL+   +   D ++MD+Q+  + GLE
Sbjct: 15  TILVVEDNELNQQVAQALLEYNGAVVSIASNGQEALDKLSKENFDCVLMDVQMPVLDGLE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK I+ +    +I +IA+TA A +   +  R  G   ++ KPI     +  I K++
Sbjct: 75  ATKMIRANPNWSKISIIALTANADQDYRDSCRSAGMNDFLVKPIDPEQLVIIISKWL 131


>gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 256

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V+IVED  +  ++  D +   G      R+G  AL+L +  +PD++I+D+ L  +S
Sbjct: 1   MRRRVLIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSSQPDLVILDVMLPRLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++   +    PV+ ++A     +     + G + Y+ KP  L   +  ++  +
Sbjct: 61  GLDVCRRMRTAGD--RTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNML 118

Query: 121 GE 122
             
Sbjct: 119 SR 120


>gi|119471137|ref|ZP_01613669.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonadales bacterium TW-7]
 gi|119445793|gb|EAW27075.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonadales bacterium TW-7]
          Length = 920

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VEDN +N ++   ++E +        +G+EAL+  + +  D+I+MD Q+  + G 
Sbjct: 797 KHILLVEDNPINRQVIAKMLEPTAVTITMANDGLEALKTLKSNVFDLILMDCQMPNMDGY 856

Query: 63  EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T +I+E+   E + +P+IA+TA A + D++R    G + +ISKP++       I   +
Sbjct: 857 ECTIRIRENEIGEDKRVPIIAITANAYEEDKQRCLDVGMDDFISKPVNSQGLYSVIANNL 916


>gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 239

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    ++  G+      +G  AL+ AR  +PD +I+D+ +  + G 
Sbjct: 13  ARVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMPGMDGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++ D    + P + +TA     D+      G + Y++KP SL   +  ++  +  
Sbjct: 73  GLLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130


>gi|71908367|ref|YP_285954.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71847988|gb|AAZ47484.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 1275

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              ++++VED  +N  +   ++E  G+      NG E+L L   +   V++MD+Q+  + G
Sbjct: 1155 SARILLVEDEPINQDVALAILEEIGWKIDVAANGRESLALVEANDYQVVLMDMQMPVMDG 1214

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            L  T+QI+     + +P+IA+TA A   D +R  + G   ++SKP+   +    + K++ 
Sbjct: 1215 LAATRQIRRLPGHETLPIIAMTANAFSEDRDRCVEAGMNDFLSKPVEPEVLYAMLLKWLR 1274



 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 3    KKVMIVEDNELNM----KLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQL 56
            K+ ++++D  +      +L R +       A       E +E A +     D++++D+ +
Sbjct: 1002 KRALVIDDMPVTRLVQSQLLRMIGLEGEGAAGGAVALQE-IEAAEREGKPYDLVLVDLLM 1060

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
              + G E   +++     Q+   I VTA +     E   + G    + KP+S S+  + +
Sbjct: 1061 PGMDGFETLARLRALPLRQQPLAILVTASSDPEIIEDATRMGFAEALLKPLSPSMLNDCL 1120

Query: 117  KKYIGE 122
             +++ +
Sbjct: 1121 VRHLAD 1126


>gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L]
 gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L]
          Length = 232

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|333030003|ref|ZP_08458064.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332740600|gb|EGJ71082.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 242

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED      L +  +E  GY      +G + L L + +   +II DI L  ISG
Sbjct: 15  MIKILVVEDEVRVADLIKRGLEEVGYKVDAAYDGQQGLNLFQNNSYHMIISDIILPHISG 74

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+     + IP++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 75  FELCQKIRLID--KNIPILMLTALGTTDDKLEGFDAGADDYMVKPFDFRELDARIKVLLK 132

Query: 122 E 122
            
Sbjct: 133 R 133


>gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10]
 gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10]
          Length = 1104

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++I +D  +N+++  + +   GY      +G E L+       D+II+D+ +  ISG 
Sbjct: 693 ARILIADDEPVNLQVLTNQLSLEGYETHLASSGEEVLDFIAAESFDLIILDLMMPGISGY 752

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+   ++ED  L ++P++ +TA +   D+    + G   Y+ KP         ++  I 
Sbjct: 753 EVCVSLREDFSLVDLPILMLTAKSGLDDKVIAFEAGANDYLVKPCERLELTSRVRTLIR 811


>gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 231

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D    ++L    +   GY   +  NG++AL +  + K  ++I+DI +  I GL++
Sbjct: 4   VLIVDDEVEIIELMEVYLLNDGYKVFKATNGLDALNIINKEKIHLVILDIMMPGIDGLQV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+++     IP+I V+A   + D+ +    G + YI KP S    +  +K  I  
Sbjct: 64  CMKIRKE---YNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118


>gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 842

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 4/124 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED+ +N +   +L+   G  A    NG EAL    ++  D+++MD Q+  + G E
Sbjct: 709 RVLLVEDHPINQEYAVELLNMIGITADIAENGREALTRLAKNHYDIVLMDCQMPVMDGYE 768

Query: 64  ITKQIKE----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
               I+         + +P++A+TA A+  D++R    G + +++KP S+     ++ ++
Sbjct: 769 TAMAIRAAEQSHPGSRRLPIVALTANALPADQQRCMDSGMDDFLAKPFSIQQLYASLARW 828

Query: 120 IGEA 123
           +  A
Sbjct: 829 LPPA 832


>gi|325299930|ref|YP_004259847.1| two component transcriptional regulator, AraC family [Bacteroides
           salanitronis DSM 18170]
 gi|324319483|gb|ADY37374.1| two component transcriptional regulator, AraC family [Bacteroides
           salanitronis DSM 18170]
          Length = 915

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++++DN+      R L+E   Y  L+  NG E L+ A ++ PD II D+ +  + G+E
Sbjct: 668 TVLVIDDNQDVRDYVRLLLERE-YRVLEASNGQEGLQQAMKYVPDAIICDVMMPVMDGME 726

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K + +   IPV+ +TA+ M   + +  + G ++YI KP S  +    ++  I
Sbjct: 727 CCRRLKSEVQTSHIPVMMLTAYTMDEQKVQGYECGADSYILKPFSAKLLQVRLRNLI 783


>gi|320335459|ref|YP_004172170.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319756748|gb|ADV68505.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 226

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+IVED           +   GY   +  NG  ALEL R  +PD+I++D+ L E+S
Sbjct: 1   MTHTVLIVEDEVRLADTLEAYLRRDGYRTERATNGRAALELWRAARPDLILLDLMLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ +Q++      + P+I +TA   + D       G + Y+ KP S    +  ++  +
Sbjct: 61  GLDVARQVRAAG---DTPIIMLTALDEEVDRLVGLGLGADDYVVKPYSPREVVARVRAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|298385042|ref|ZP_06994601.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298262186|gb|EFI05051.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1312

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 63/119 (52%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
               +++V+DN      F   +       L   +G+EAL+L + + PD+I+ D+ +  ++G
Sbjct: 1057 SYTILVVDDNSDLTDFFSKALSEYFKKVLIASDGVEALQLVKSYTPDIIVSDVMMPRMNG 1116

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E+ K IKED  +  IP+I +TA   K  +    K G + Y++KP  + + ME I+  +
Sbjct: 1117 YELCKGIKEDLAVSHIPIILLTARDDKESQISGYKNGADGYLTKPFEIEMLMELIRNRL 1175


>gi|262118598|pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
           Complex Sheds Light Into Two-Component Signaling And
           Reveals A Novel Cis Autophosphorylation Mechanism
 gi|262118599|pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
           Complex Sheds Light Into Two-Component Signaling And
           Reveals A Novel Cis Autophosphorylation Mechanism
 gi|262118600|pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
           Complex Sheds Light Into Two-Component Signaling And
           Reveals A Novel Cis Autophosphorylation Mechanism
 gi|262118601|pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
           Complex Sheds Light Into Two-Component Signaling And
           Reveals A Novel Cis Autophosphorylation Mechanism
          Length = 122

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D+ +  K+    ++  GY  ++  NG  ALE   +  PD+I++ I +  + 
Sbjct: 1   MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++E  E + IPVI +TA   + DE      G    + KP S S F+E +K  +
Sbjct: 61  GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120

Query: 121 GE 122
            E
Sbjct: 121 NE 122


>gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
 gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
          Length = 247

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++EDN    +L R+ +    +       G E + L +++  D++++D+ L +I G
Sbjct: 27  MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 86

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I K ++  S   ++P+I +T    +  E +  + G + YI+KP   ++F++ ++  + 
Sbjct: 87  YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 143

Query: 122 EA 123
            A
Sbjct: 144 RA 145


>gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 230

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++++D +    L    ++  GY   +  NG +ALE+  + +  ++++DI +  + 
Sbjct: 1   MNNNILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E      IP++ ++A     D+ +    G + Y+ KP +       I+  +
Sbjct: 61  GLEVCRRVREK---YNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+    K+    +   GY  +   + +EAL++ R    D+II+DI L ++ G+E
Sbjct: 6   KILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDILRNTTVDLIILDIMLPKMDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I+E  +   +P+I ++A     D+ +    G E YI+KP +    M  IK  +  
Sbjct: 66  ACLKIREQYQ---MPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRR 121


>gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 669

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 77/120 (64%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VEDNE+N+K+  +++   GY      +G +ALE  +++  D+I+MDIQ+ E++G 
Sbjct: 550 KRILLVEDNEINIKITCEMLNRLGYEYEYVYDGKQALEKLKENTFDLILMDIQMPELNGY 609

Query: 63  EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + T+ I+E      + + +IA+TA++M GD ER  + G + YISKP  ++     I ++I
Sbjct: 610 DTTRIIREKEIKTKEHVNIIAMTAYSMNGDRERCIEVGMDDYISKPFDMNKLKNVILRFI 669


>gi|319940603|ref|ZP_08014946.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805969|gb|EFW02727.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis
           3_1_45B]
          Length = 241

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 5/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62
           +++V+D  +  +L    +E +GY  +   +G+ ALE+  +    P+++I+D+ + E+ G 
Sbjct: 8   ILVVDDESMIRRLVLANLERAGYDVMSAADGIRALEVYAKAPVKPNLVILDVMMPEMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++++E    +++PVI +TA      + R    G + Y+ KP S+   +  I+  +  
Sbjct: 68  ECARRLREK---KDVPVIFMTAKTDSASKLRGFDLGADDYVCKPFSMEELLARIRAILHR 124

Query: 123 A 123
           +
Sbjct: 125 S 125


>gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
 gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
          Length = 231

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I +DN     +        G+  +   +G EAL   R+  P VI++D+ + ++ G
Sbjct: 1   MEKMLIADDNRQITAVLTAYARKEGFEPVVAYDGEEALAAYRREAPAVILLDVMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+E+S    +P+I +TA     ++      G + YI KP S    M  ++  + 
Sbjct: 61  FEVCRQIREESA---VPIIMITARGEDFEKIMGLDIGADDYIVKPFSGGEVMARVRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157


>gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     ++  G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 268

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157


>gi|171060877|ref|YP_001793226.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778322|gb|ACB36461.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1110

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 63/118 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N  +  +L+  +G+      NG+EAL        D+I+MD+Q+ E+ GL
Sbjct: 747 ARLLLVEDNPVNQDVALELLRAAGFAVDVASNGVEALAQVHGRSHDLILMDMQMPEMDGL 806

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+ I+       +P++A+TA A   D       G   +I+KP+  +     + +++
Sbjct: 807 EATRLIRALPGCATVPILAMTANAFGDDRAACLAAGMNDHIAKPVDPAHLYAVLLRWL 864


>gi|167765067|ref|ZP_02437180.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183]
 gi|167696695|gb|EDS13274.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183]
          Length = 1350

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K++IVEDN+   +  R  +    Y      NG  AL + +++ PD+II DI + E+ G 
Sbjct: 1089 QKILIVEDNDELREYLRRTL-AENYHVQVCSNGKSALCIVKEYFPDLIISDIMMPEMRGD 1147

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+ +++K D +   IPVI +TA     +     + G + Y+ KP ++ I   TI   +  
Sbjct: 1148 ELCQKVKNDIDTSHIPVILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLAN 1207

Query: 122  EA 123
             A
Sbjct: 1208 RA 1209


>gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 227

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED      L R  +   G+      +G +A+  A +   DVI++D+ L  + G E
Sbjct: 2   RVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLMLPSLDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        PV+ ++A     D  R    G + Y+ KP S       I+  I  
Sbjct: 62  VCRRLRAAGRWS--PVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRR 118


>gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 248

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D E   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 22  RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 82  VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 137


>gi|218129056|ref|ZP_03457860.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697]
 gi|217988691|gb|EEC55010.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697]
          Length = 1458

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + +  +E   +      +G+E L++   H PDV++ D  +  + G+E+
Sbjct: 1200 VLVVDDNVDLCNMLKLQLEDR-FNIHLAHDGVEGLKMVNFHHPDVVVTDQMMPCMDGMEM 1258

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K+I+ D ++  IPVI +TA   +  + +    G  AYI KP S    +  I++ +GE
Sbjct: 1259 LKRIRGDFQISHIPVIMLTAKGDEDSKIQAISQGANAYIVKPFSKDYLVVRIEQLLGE 1316


>gi|220933691|ref|YP_002512590.1| adenylate/guanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995001|gb|ACL71603.1| adenylate/guanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 380

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D E+N  +    +E  G+  LQ  +G +AL++ R+   D +++D+ ++ + G 
Sbjct: 26  RTLLVVDDQEVNRLILARHLELLGHRVLQADSGPQALQILREQSVDGVVLDVVMRGMDGY 85

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ ++IK D E   IPV+ VT    + D  R  + G + ++SKP+        I+  + 
Sbjct: 86  EVCRRIKADPETWFIPVVMVTVLNNQADRVRAMEAGADEFLSKPVYPEELSARIRSLMR 144


>gi|197122714|ref|YP_002134665.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
 gi|196172563|gb|ACG73536.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
          Length = 434

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D     ++   ++    Y      +G EAL+LAR   PD++++DI +  + G E+ 
Sbjct: 133 LVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEHPDLVLLDIGMPRLDGFEVL 191

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++++D    +IPVI V+       + R    G   Y+ KP S       +++ + 
Sbjct: 192 QRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLR 247


>gi|217976612|ref|YP_002360759.1| response regulator receiver protein [Methylocella silvestris BL2]
 gi|217501988|gb|ACK49397.1| response regulator receiver protein [Methylocella silvestris BL2]
          Length = 123

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/122 (63%), Positives = 103/122 (84%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++IVEDNELNMKLF DL+E  GY  +QTR+G+EA+ L R+H PD+I+MDIQL E+S
Sbjct: 1   MQKTILIVEDNELNMKLFNDLLEAHGYKTVQTRSGLEAVGLTREHMPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ +K+D  L+ IPVIA+TAFAMKGDEE+IR+GGCEAY+SKPIS+  F+ET++ Y+
Sbjct: 61  GLEVTQWLKQDEALRHIPVIAITAFAMKGDEEKIRQGGCEAYLSKPISIVKFLETVRSYL 120

Query: 121 GE 122
            E
Sbjct: 121 NE 122


>gi|150004693|ref|YP_001299437.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|160892059|ref|ZP_02073062.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492]
 gi|149933117|gb|ABR39815.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|156858537|gb|EDO51968.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492]
          Length = 1356

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN    +   + ++ + Y  LQ  +G E L LA ++ P++I+ DI +  ++G+ + 
Sbjct: 1097 LVVEDNRDIREYIANELQDT-YRILQADDGKEGLALALKYTPNIIVSDIMMPNMNGIALC 1155

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K IK D     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1156 KAIKSDMNTSHIPVILLTAKDSIQDKEEGYNSGADSYLTKPFSAKLLRSRINNLL 1210


>gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|328887223|emb|CCA60462.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 263

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+E+  K     +E  GY      +G+  LEL R  + D++++D+ L  + G+ 
Sbjct: 37  TILLVEDDEVIRKSVAMALERYGYHVSVAGDGLTGLELFRAGQHDLLLLDVMLPALDGIG 96

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E       P++ ++A     D     + G + Y+ KP+  ++ +  I+  +  A
Sbjct: 97  LCRRIRE---TSTAPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRA 153


>gi|315182011|gb|ADT88924.1| response regulator receiver protein [Vibrio furnissii NCTC 11218]
          Length = 315

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N++L   L++   Y  L   +G +AL + R+HKPD+I+MD+ + +++G +
Sbjct: 17  TVLVVDDQPTNIQLIYQLLKKE-YDVLMATSGQQALAVCREHKPDLILMDVLMPDMNGWD 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K D ++  IPVI VTA   + DE      G   ++ KPI+ +     ++ ++
Sbjct: 76  TCQTLKRDPDIATIPVIFVTALTDQDDENACWDAGAVDFLQKPINANTLKHRVRAHL 132


>gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 235

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    ++L    +   G+      +G EAL++AR+ +PD  I+D+ +  + G E
Sbjct: 9   KVLVVDDEPNIVELLTVSLRFQGFEVESVNSGSEALKVAREFRPDAYILDVMMPGMDGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++ D    + PV+ +TA     D       G + Y++KP SL   +  ++  +  
Sbjct: 69  LLSKLRADGL--DGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 125


>gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 813

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++ +ED+E   KL   ++    Y      +G     L      D+I++D  L +++G+E
Sbjct: 2   KILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAYDLILLDWMLPKLTGIE 61

Query: 64  ITKQIKEDSEL-----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + ++++  + L     Q+ P++ +T       +      G + Y+ KP+     +  I+ 
Sbjct: 62  LCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLARIRA 121

Query: 119 YIGE 122
            +  
Sbjct: 122 LLRR 125



 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 13/108 (12%)

Query: 26  GYIALQTRNGMEALELARQHKPDVIIMDIQLQE-------------ISGLEITKQIKEDS 72
           GY         +  E+  Q +PD++I+DI+  +              +G+E+ + I+ D 
Sbjct: 528 GYQLTLLSEPQQFWEILEQSEPDLLILDIKFSKPASSDQEKERSSFFNGIELCQVIRNDL 587

Query: 73  ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               +PVI ++        +R    G + ++SKP+  S  +  ++  +
Sbjct: 588 RWNRLPVILLSVHTDLETVQRGFMAGADDFLSKPVVASELLIRVRSRL 635



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL--QEISG 61
            ++I+E +    +L      T G          EA +L    + +V+++D+     E +G
Sbjct: 381 TLLILESDMTLRQLLVKEALTWGIETQVATTLDEAEKLLNSGQCNVMLLDLNFYDSEPTG 440

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L+    +  + +   +P I +TA           + G   ++ KP+  S  +  + + + 
Sbjct: 441 LQFLATL--NRQHPSLPAIILTAEESFEKRIEAARWGNHYFLVKPVVPSQILAVVTQTLR 498

Query: 122 EA 123
           +A
Sbjct: 499 QA 500


>gi|189464019|ref|ZP_03012804.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM
            17393]
 gi|189438592|gb|EDV07577.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM
            17393]
          Length = 1399

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   L+    Y      +G EALE+      D+I+ D+ +  + G+E
Sbjct: 1142 TLLLVEDNEDLLALMVKLLGAE-YDICTATDGKEALEVVESADIDLIVSDVMMPVMDGIE 1200

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              K +K + +   IP+I +TA + + D     + G +A+I+KP +LSI    I   +
Sbjct: 1201 FCKAVKGNFDTSHIPLILLTAKSKEEDRVEAYESGADAFIAKPFNLSILHARIGNLL 1257


>gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
 gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D      L    +++ G+   +   G +AL+   + + D+ I+D+ L +IS
Sbjct: 1   MKANILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERLDLAILDVMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  +  +I+ +      PV+ +TA     D+      G + Y++KP +    +  +K  +
Sbjct: 61  GFTLCGEIRRE---HHFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2]
          Length = 227

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED +        L+   GY      +G++AL    ++  D++++D+ L  +SG
Sbjct: 1   MTRILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLMLPGVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++       +P+I +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRELR---VKSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104]
 gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22]
 gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG]
 gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis]
 gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104]
 gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22]
 gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG]
 gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137]
 gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017]
 gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141]
 gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244]
 gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012]
 gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043]
 gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645]
 gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341]
 gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346]
 gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B]
 gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630]
 gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A]
 gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62]
 gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++ +D++  ++L    I   GY  ++  +G EAL         D++I+DI +  + G+
Sbjct: 2   KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+++++S+   IP+I +TA     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  EVVKELRKESQ---IPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118

Query: 123 A 123
           +
Sbjct: 119 S 119


>gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 226

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E        L+   GY    T  G EALE   +   D++++D+ L  + G
Sbjct: 1   MTRILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRQLRTRS---SVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|113474731|ref|YP_720792.1| response regulator receiver modulated serine phosphatase
           [Trichodesmium erythraeum IMS101]
 gi|110165779|gb|ABG50319.1| response regulator receiver modulated serine phosphatase
           [Trichodesmium erythraeum IMS101]
          Length = 378

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+++++D+    +L R ++   GY      NG E  + A+  +P +II D  +  ++
Sbjct: 1   MIYKILVIDDDTTVQELLRRVLGKQGYTVTVASNGEEGFKQAQLLQPALIICDWIMPRLT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++K  S+L     I +T+     D  +    G + +ISKPI+++     ++  +
Sbjct: 61  GIEVCRKVKASSDLSTTFFILLTSLGSVQDLVKGLDAGADDFISKPININEMKARVRAGL 120

Query: 121 G 121
            
Sbjct: 121 R 121


>gi|315646786|ref|ZP_07899901.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315277716|gb|EFU41040.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 522

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
           K++++VED+  N+     ++E+     + T NG EALE+ ++ H  D+++MDI + E+ G
Sbjct: 402 KRILLVEDDIRNIFSLVSVLESYKLNVVFTENGREALEMLQKDHNFDLVLMDIMMPEMDG 461

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  K I+E  +  ++P+IA+TA AMK D +R    G   YI+KPI +   +  +K ++
Sbjct: 462 YETMKAIREIPQFDKLPIIALTAKAMKEDRQRCIDAGASDYITKPIDVEKLLSLLKVWL 520



 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 4   KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++ I+ED+    K+  D++    +  +    G   L LA  +KPD I++DIQL  I G 
Sbjct: 134 RILLIIEDDIHFAKILLDIVRAHKFKGIVALKGDRGLALAHAYKPDAIMLDIQLPVIDGW 193

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
            I +++K+  +L+ IPV  ++        ++    G  AY+ KP + +     +  I+ +
Sbjct: 194 TILERLKQQPDLRHIPVHVISVVDEP---QQGLSMGAMAYLKKPANKNQIEGALAHIETF 250

Query: 120 IGE 122
           +  
Sbjct: 251 VDR 253



 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+ +      +LI     I      G EAL    +   D +++D+ L +I+G 
Sbjct: 256 KRLLIVEDDVILRSSMVELIGHDDVIITAVSTGAEALRELGREHFDCMVLDLGLADITGF 315

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI--------FME 114
           E+  +I++   LQ++P+I  T   +   EE   K   E+ I K +            F+ 
Sbjct: 316 ELLDRIRQTKHLQQLPIIIYTGKELDMKEEIELKKYAESIIIKNVKSQERLFDETALFLH 375

Query: 115 TIKKYIGE 122
            ++  + E
Sbjct: 376 RVEANLPE 383


>gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 232

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D +  + L    +   G+   +  +G  AL LAR  +PD++I+D+ L  + G+
Sbjct: 4   ATILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARACRPDLVILDVMLPGLDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++ +++    + V+ +TA   + D+      G + Y++KP S    +  +K  +  
Sbjct: 64  EVCRRLHQETA---VYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120


>gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597]
 gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597]
          Length = 231

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALE+ ++   D+II DI +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKPIDLIITDIMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++    +  + P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 238

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++ ED+    +L R  +E   +       G  AL   R  +PD++I+D+ L  ++
Sbjct: 10  MCANIVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAEPDLLILDVMLPGMN 69

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+  S   ++P++ +TA + + D  +    G + Y++KP S    M  ++  +
Sbjct: 70  GLTVCRTIRASS---DLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLL 126

Query: 121 GE 122
             
Sbjct: 127 RR 128


>gi|256393335|ref|YP_003114899.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256359561|gb|ACU73058.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 241

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED+    +L R  +++ GY      +   A        PD++++D+ L    
Sbjct: 1   MSAYILIVEDDPKQAELIRVSLQSEGYRTAIAHDAPSAFRSVEDCPPDLVVLDLMLPGAD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I + ++   E    PV+ VTA + + D       G + Y++KP S    +  I+  +
Sbjct: 61  GLTICRWLRRRGET---PVLMVTARSTEDDVLAGLDVGADDYMTKPYSPRELVARIRTVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
 gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
          Length = 224

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I+ED E    + +  +E +GY  +   +G+E +E  R +KPD++++D+ L +I 
Sbjct: 1   MSKMILIIEDEESIQNIIKAFLEDAGYTVVLAADGLEGIEQFRANKPDLVLLDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + ++++S    +P+I +TA   +  + +      + YI+KP S+ + M+ I+  +
Sbjct: 61  GFAVCEILRKESR---VPIIMLTALDDEDSQMKGFDALADDYITKPFSMPVVMKHIEAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 248

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 24  KILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 84  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139


>gi|88607360|ref|YP_505143.1| response regulator PleD [Anaplasma phagocytophilum HZ]
 gi|88598423|gb|ABD43893.1| Response regulator/GGDEF domain protein PleD [Anaplasma
           phagocytophilum HZ]
          Length = 456

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D   N+KL +  +    Y  +   +G EA+ +A +H+PD+I++D+ +  + 
Sbjct: 1   MTAKILIVDDLPSNIKLLQAKLTAEYYTVITATSGPEAIRMAEEHQPDLILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  K ++ +  +  IP++ VTA      +       G + ++ KPI        IK  
Sbjct: 61  GYETCKNMRTNPAIAYIPIVMVTALDNTTSNRVNGLSAGADDFLIKPIDDVALFSRIKSL 120

Query: 120 IG 121
             
Sbjct: 121 TR 122



 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I++++++  +   +L++ S        +  + +      K D++I+D+      GL 
Sbjct: 158 KILIIDEDKIRAESINNLLQESFQETTILSDPTQNINFTNAAKYDLLIIDMHFAG-DGLR 216

Query: 64  ITKQIK-EDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSIFMETIK 117
           +  + +  + E +   ++ +   +   +   +    G   YI  PI  +  +  + 
Sbjct: 217 LCSEFRNSNEESRYTSILLLIDESEDTNILHKAFDIGISDYIMVPICNNELVARVN 272


>gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E   +L +D +E SG+      +G    + A +   D+ I+D+ L  I G
Sbjct: 1   MSRILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I KQI+E    +  P+I V+A     D+      G + Y++KP S S  +  +K ++ 
Sbjct: 61  FAICKQIREK---KNTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|299149007|ref|ZP_07042069.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
 gi|298513768|gb|EFI37655.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
          Length = 1353

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L+  NG EALE  + ++ D+I+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEVDIIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SL+I    I+  + 
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220


>gi|260171277|ref|ZP_05757689.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|315919587|ref|ZP_07915827.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|313693462|gb|EFS30297.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
          Length = 1353

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L+  NG EALE  + ++ D+I+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEVDIIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SL+I    I+  + 
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220


>gi|322420796|ref|YP_004200019.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320127183|gb|ADW14743.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 377

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K+  VMIV+D   N+++  + +    Y      +G +ALEL R  KPD+I++DI +  +
Sbjct: 1   MKRQTVMIVDDTPANIEILSESLGDD-YELFFATSGADALELIRADKPDLILLDIMMPGM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+   +K D   ++IP+I VTA   +  E +  + G   Y++KPIS  I    +K +
Sbjct: 60  DGYELCTILKGDPTTRDIPIIFVTAMIEEEQEIKGLELGAIDYLTKPISPHIVRARVKNH 119

Query: 120 I 120
           +
Sbjct: 120 L 120


>gi|237722583|ref|ZP_04553064.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448393|gb|EEO54184.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1353

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L+  NG EALE  + ++ D+I+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEVDIIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SL+I    I+  + 
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220


>gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9]
 gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9]
          Length = 1205

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VEDN +N +L   L+E  G+      NG EA++   + + D+I+MD+Q+  + G E
Sbjct: 955  RVLLVEDNPVNQRLASRLLEKLGHGVTLASNGQEAVDWYGREQFDMIMMDVQMPFMDGFE 1014

Query: 64   ITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T  I+  E    +  P+IA+TA AM+GD ER  + G + Y+ KPI L      + + 
Sbjct: 1015 ATSAIRALELGGSRRQPIIAMTAHAMRGDRERCLEAGMDGYVPKPIMLDELAAEMHRV 1072



 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQEI 59
           V++V+D+  N +L  D +   G   + T  GM AL+       R   P + ++D ++ ++
Sbjct: 807 VLVVDDHPTNRRLMYDTLRQFGARPVVTEGGMSALQYLHGAQLRGELPQLALIDGEMPQM 866

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           SG+E+ + ++  +  ++I  I +T+      +  +R  G    + KP+  S  +  +
Sbjct: 867 SGMELMRYMQHQAAWRDIACIMLTSQWDPAMQGELRLQGVVHCLQKPVEASRLLRVM 923


>gi|145300860|ref|YP_001143701.1| OmpR family two-component response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853632|gb|ABO91953.1| two-component system response regulator, OmpR family [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 240

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++V+D+     L +  +E  G      R+G E   L  + + D++++D+ +    G
Sbjct: 5   STHILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + ++++  S    +P+I +TA   + D     + G + Y++KP +    +  IK  + 
Sbjct: 65  LTLCRELRAKSC---MPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|78223985|ref|YP_385732.1| response regulator receiver domain-containing protein [Geobacter
           metallireducens GS-15]
 gi|78195240|gb|ABB33007.1| response regulator receiver domain protein (CheY-like) [Geobacter
           metallireducens GS-15]
          Length = 122

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 77/120 (64%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I+EDNE N+ L   ++E  GY      +G E + LA   +P +I++DIQL E+ 
Sbjct: 1   MNNKILIIEDNEQNLYLLSFILEKHGYEVFAAMDGFEGIALADSVRPTLILLDIQLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++++ +  L ++P++AVT++AM GD E+    GC  YI KPI+   FM+ +K+++
Sbjct: 61  GYDVARKLRANPSLADVPIVAVTSYAMAGDREKALIAGCSGYIEKPINPDTFMQQVKEHL 120


>gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 235

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++++D      L   ++    Y+     NG  AL+L     PD++++D+ L + SG
Sbjct: 1   MKKILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+I   +  + +PVI ++A     D+    + G E Y++KP      +  IK  + 
Sbjct: 61  YDLCKEI---TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +   +L +  +E   Y+  +  NG +A+++A ++  D+I++D+ L ++ G++
Sbjct: 7   HLLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDYDLILLDLMLPKMDGIQ 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++I+E    +  P++ +TA   +       + G + YI KP S    +  +   +  
Sbjct: 67  AAEKIRES---KNTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKR 122


>gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 234

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++++D+   + + ++ +E  G+      +G    E A +   D+I++D+ + +++G
Sbjct: 8   MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  + I+ +   +  PV+ +TA     D     + G + Y+ KP +    +  ++  + 
Sbjct: 68  IDALRAIRAE---KNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|315500125|ref|YP_004088928.1| response regulator receiver protein [Asticcacaulis excentricus CB
           48]
 gi|315418137|gb|ADU14777.1| response regulator receiver protein [Asticcacaulis excentricus CB
           48]
          Length = 122

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 86/122 (70%), Positives = 105/122 (86%), Gaps = 1/122 (0%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  KKV+IVEDNELNMKLF DL++  GY  LQT  G+ AL LAR+H+PD+I+MDIQL EI
Sbjct: 1   MSAKKVLIVEDNELNMKLFHDLLDAQGYETLQTGEGLSALSLARKHRPDLILMDIQLPEI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGLE+TK +KED EL  IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+S F++T+++Y
Sbjct: 61  SGLEVTKWLKEDDELSHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVSHFLDTVRRY 120

Query: 120 IG 121
           +G
Sbjct: 121 LG 122


>gi|218678690|ref|ZP_03526587.1| response regulator receiver protein [Rhizobium etli CIAT 894]
          Length = 123

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 94/123 (76%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+VMIVEDNELNMKLFRDLIE SGY  +QTRNGMEAL+LAR+++PD+I+MDIQL E+S
Sbjct: 1   MPKQVMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARKYRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED EL  IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+ETIK Y+
Sbjct: 61  GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 224

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED+E   +  RD     GY      +G   LEL      D++++D+ L  + G
Sbjct: 1   MPKILIVEDDEALARGLRDNFACEGYEVAYAADGDTGLELLLDGGADIVLLDVMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I +  +   E   +P++ +TA   + D  R  + G + Y+ KP S+   +  ++ ++ 
Sbjct: 61  YSICEAARR--EGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIARVRAFLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|171914500|ref|ZP_02929970.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I ED+        +++   G+  +   +G EA EL +  +PD + +D+ +  + G E
Sbjct: 2   KILIAEDDSFTRAALCEVLSAEGFGVVPAADGREAWELFKSQRPDFVCLDVMMPHLDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ D +   +P++ +TA + + D     + G + Y++KP  +   +  I+     
Sbjct: 62  VCRRIRRDDDT--VPILFLTAKSEEIDAVLGLELGADDYMAKPFGVREILARIRAITRR 118


>gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 240

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 74  VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129


>gi|315180653|gb|ADT87567.1| Response regulator [Vibrio furnissii NCTC 11218]
          Length = 241

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
            +++V+D+    +L  + +  SG+      +G  AL         PD++++D+ L    G
Sbjct: 5   HILVVDDDIEICELLDEYLSKSGFSVATVSDGR-ALAQYLTDHGYPDLVLLDVMLPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+ DS    +P+I +TA + + D+      G + YI+KP S    M  IK  + 
Sbjct: 64  FTLCQKIRRDS---NVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|298675227|ref|YP_003726977.1| response regulator receiver protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288215|gb|ADI74181.1| response regulator receiver protein [Methanohalobium evestigatum
           Z-7303]
          Length = 352

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D     +L +  +    Y  +   +G +A+++  Q  PD+I++DI + ++ G E
Sbjct: 228 KILIVDDEPDIPELIKLSLSNEPYDFIVAYSGEQAVDMTLQELPDLILLDIMMPDMDGYE 287

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++ +D   ++I +I V+A     D+ +  + G + YISKP         IK  +  
Sbjct: 288 VVEELNKDKSTRDIAIIMVSAKTRVEDKLKGMELGIDDYISKPFDERELNARIKMVMKR 346


>gi|296159892|ref|ZP_06842713.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295889875|gb|EFG69672.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 364

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ L  D ++ +GY  L   +G  AL+   +  PD +++D  +  + G E 
Sbjct: 23  VLIVDDTPDNLALLSDTLQAAGYAVLVALDGQSALQRLARITPDAVLLDALMPGLDGFET 82

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++IK D   + +PVI +TA        +  + G   Y++KP+  S     I  ++  +
Sbjct: 83  CRRIKADPRNRHLPVIFMTALTDSEHVVQGFRVGGIDYVTKPVKPSEVSARIAAHVQRS 141


>gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 230

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED+    ++    +   G+  +   +G E + L +Q   D++++DI L +++G
Sbjct: 1   MQRILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K I+E S    +PV+ ++A     D+      G + YI+KP S+      +K  I 
Sbjct: 61  MDFLKIIREKS---NVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|289670369|ref|ZP_06491444.1| two-component system sensor protein [Xanthomonas campestris pv.
            musacearum NCPPB4381]
          Length = 1057

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ D+++MDI + E+ G+
Sbjct: 937  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 996

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D ER  + G   YI+KPI +   +   + +   
Sbjct: 997  TAMRQIRANLQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1056



 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    +   DL     +  +   N  EAL LA + +P  I++DI L + SGL +
Sbjct: 671 ILAVEDDTRFAQALVDLAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 730

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + +PV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 731 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRDLLAGAIRQL 782



 Score = 73.6 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+       + L+       +   +  EA+E       D ++ D+ L + SG 
Sbjct: 791 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMEQLAGSTFDCMVTDLALPDGSGY 850

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 851 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 910

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 911 SVEASLPSDQQRLLREA 927


>gi|251796140|ref|YP_003010871.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543766|gb|ACT00785.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED +   +L RD +E+ G+       G   L+ A     D+II+D+ L ++ G
Sbjct: 1   MKSILIIEDEKAIAELERDYLESHGFAVEIEGRGDIGLQKALGGSYDLIILDVMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI +QI++    + +PV+ VTA     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICRQIRQ---TKNVPVLLVTAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|38234503|ref|NP_940270.1| putative two component system response regulator protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein
           [Corynebacterium diphtheriae]
          Length = 236

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    ++L +  ++  G+     ++G+EALE AR  +PD  I+D+ +  + G E
Sbjct: 10  RVLVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVMMPGMDGYE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++ D    E PV+ +TA             G + Y++KP SL   +  ++  +  
Sbjct: 70  LLPKLRADGF--EGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126


>gi|291568744|dbj|BAI91016.1| two-component response regulator (OmpR subfamily) [Arthrospira
           platensis NIES-39]
          Length = 253

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L    +E +GY      +G+    LA Q  PD+II+D+ L ++ G
Sbjct: 1   MPRILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQALALQLLPDLIILDLMLPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++ D    EIPV+ +TA     D+      G + Y++KP  L   +  ++  + 
Sbjct: 61  FTVCQRLRRDERTGEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 908

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VEDNE+N ++ ++L+E  G       NG EA+    + + D ++MD+Q+  + G+
Sbjct: 651 AHLLLVEDNEINQQVAQELLEGFGIKVAVAENGEEAIARLNEEQFDGVLMDMQMPVMDGI 710

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T++I+++ +   +P+IA+TA     ++      G   +I KP+     + T+ K++  
Sbjct: 711 SATREIRKNPKFATLPIIALTANVYVSEQNAFLAAGMNDHIGKPLDPDRLVATLAKWLRP 770

Query: 123 A 123
           A
Sbjct: 771 A 771



 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 60/128 (46%), Gaps = 18/128 (14%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD-----VIIMDIQLQE 58
           +V+ V+D+E ++ + ++ +E+  +      NG  AL   R+   D     + I+D ++ E
Sbjct: 501 RVLAVDDSENSLSILKNYLESFSFDVSVASNGRSALSTVRKANKDGKPFSLAILDWKMPE 560

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAF-------AMKGDEERIRKGGCEAYISKPISLSI 111
           + GLE+ +++   +E +  P I + A        A++ ++        +  + KP + + 
Sbjct: 561 MDGLELARELHAMTEAENKPKILLIAGYGQNGTPALRNNKV------VDGVLEKPFNQNK 614

Query: 112 FMETIKKY 119
             + I + 
Sbjct: 615 LFDAISRI 622


>gi|302878209|ref|YP_003846773.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302580998|gb|ADL55009.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 635

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 58/116 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L++ L+E SG+      NG EALE  +   P +II D  + E+ G+E
Sbjct: 325 HILLVDDDRAIRLLYKALLEKSGHSVTTANNGREALESVKASPPQLIISDWMMPEMDGIE 384

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             ++++++ +   I V  VTA           + G   Y+SKPI+  +    ++  
Sbjct: 385 FCRELRKNPDWHRIYVFIVTAQESTEKLIEAFEAGANDYLSKPINPKVLAARLRSA 440


>gi|256393258|ref|YP_003114822.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
 gi|256359484|gb|ACU72981.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
          Length = 1588

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 71/120 (59%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++++D+  N+     ++E  G   +   +G++ ++  +     +VI+MD+ + E+ G
Sbjct: 1468 RSVLVIDDDARNLFALTGMLEMHGMRVVDAEDGVKGIQALQNDPRIEVILMDVMMPEMDG 1527

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T +I+   E  ++P+IAVTA AM GD E+    G   Y++KP+  ++ +E+I++ +G
Sbjct: 1528 YEATARIRTMPEHADLPIIAVTAKAMNGDREKSLAAGANDYVTKPVDAAVLIESIQRVLG 1587



 Score = 38.6 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 22/138 (15%)

Query: 2    LKKVMIVEDNELNMKLF------RDLI---ETSG----YIALQTRNGMEALELARQHKPD 48
             +++++VED    +          DL+   E  G              EA  +       
Sbjct: 1304 SRRLLVVEDRARGLLSLVAESAAEDLLAGRERLGPQARVQIRTAVGAQEAAAMLAAEPHH 1363

Query: 49   VIIMDIQLQEISGLEITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI 107
             +++++ + +  G  +  Q +  D  L  IP++A     ++ D+ER+ +   E Y   P+
Sbjct: 1364 CVVLELDMAQ-DGAALFLQARTADPALHSIPILAHHNRTLRSDQERLLRAHAELY---PL 1419

Query: 108  ----SLSIFMETIKKYIG 121
                SL    E I  ++G
Sbjct: 1420 ELLPSLDELRERIVLHLG 1437


>gi|253699609|ref|YP_003020798.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
 gi|251774459|gb|ACT17040.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
          Length = 383

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K+  VMIV+D   N+++  + +    Y      +G +ALEL R  KPD+I++DI +  +
Sbjct: 1   MKRQTVMIVDDTPANIEILSETLGEE-YELFFATSGADALELIRADKPDLILLDIMMPGM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+   +K D   ++IP+I VTA   + +E +  + G   Y++KPIS  I    +K +
Sbjct: 60  DGYELCSILKGDPATRDIPIIFVTAMIGEEEEIKGLELGAIDYLTKPISPHIVRARVKNH 119

Query: 120 I 120
           +
Sbjct: 120 L 120


>gi|189464649|ref|ZP_03013434.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM
            17393]
 gi|189436923|gb|EDV05908.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM
            17393]
          Length = 1344

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN    +  +       Y  +  ++G E  EL +   P+VI+ DI +  + G+E+
Sbjct: 1094 VLVVEDNSDIREYIKSSFADI-YEVITAKDGQEGWELTQARIPNVIVSDIMMPIMDGVEL 1152

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K++KED     IPVI +TA     D+E     G +AY++KP S  +    I   +
Sbjct: 1153 CKKVKEDMRTSHIPVILLTAKDSLHDKEEGYASGADAYLTKPFSAKLLHSCINNLL 1208


>gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
 gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
          Length = 225

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED+    ++ +  +E  GY  L   NG++ +   R+  PD+I++DI L ++ G
Sbjct: 1   MKTILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGNPDLILLDIMLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+++SE   IPVI ++A   + D+ +  +   + YI KPISL I M+ I+  I 
Sbjct: 61  YTVCEMIRQESE---IPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1199

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VEDN  N  + R ++E  G+  +   NG EALEL      D+++MD Q+  + G E
Sbjct: 945  RLLLVEDNATNQLVARTILEKLGHTVVLAGNGKEALELLHMIPVDLVLMDCQMPVMDGFE 1004

Query: 64   ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T++I+     ++   +PV+A+TA A   D ER R  G + Y++KP+ L+   + +  + 
Sbjct: 1005 ATRRIRAGEAGEQNRLLPVLAMTAHAFAEDRERSRAAGMDDYLTKPVQLTTLSKAVTTWQ 1064

Query: 121  GE 122
            G 
Sbjct: 1065 GR 1066


>gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630]
 gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D +    L    ++  G+   +   G EALE       D+ I+DI L +I 
Sbjct: 1   MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       P+I +TA     D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFHICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
 gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED+     L    +  +GY      +G  A+  A   +PD+I++D+ L +  G  
Sbjct: 15  TVLVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVMLPDTDGFR 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +T++++        PV+ +TA A   D       G + Y++KP  +   +  ++  +  A
Sbjct: 75  LTRELRAQGVY--TPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRA 132


>gi|297183277|gb|ADI19415.1| signal transduction histidine kinase [uncultured Pseudomonadales
           bacterium HF0500_12O04]
          Length = 632

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 70/118 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV++VEDN++N  +   ++ + GY      +G +A+  A   +   I+MD +L  I+G 
Sbjct: 514 RKVLLVEDNQVNQTVIEAMLTSLGYEVSLVSDGAQAIHFANTERFAAILMDCRLPIINGY 573

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+QI++    + +P+IA+TA A++GD E   + G   Y++KP   +   + +++++
Sbjct: 574 EATRQIRQLPGCRALPIIALTANALQGDRETCLQAGMNDYLAKPFKRADLEQILQRWV 631


>gi|302337704|ref|YP_003802910.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301634889|gb|ADK80316.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 1230

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++ ED  +N      L++  G+      NG EA+ LA  +   +I+MD+ + EI GLE
Sbjct: 1112 KILVCEDEGINRFYLGTLLQNKGFAVDVAANGREAVRLAESNDYSLILMDLGMPEIDGLE 1171

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T+ I+       +P+IA+TA + K D ++ R+ G + +++KPI   +  + I+ +IG+
Sbjct: 1172 ATRMIRAQGIT--VPIIALTAHSYKEDIDKCREAGMDDFLAKPILEPLLFKKIRTWIGD 1228


>gi|288925297|ref|ZP_06419232.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella buccae D17]
 gi|288338062|gb|EFC76413.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella buccae D17]
          Length = 1340

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVED+              GY  +   NG E LE  ++H   +I+ D  +  + G E
Sbjct: 1096 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERLKEHTVSLIVSDWMMPVMDGAE 1154

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++++ D     IP++ +TA      +    + G +AYI KP S+      I+  +
Sbjct: 1155 FCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNML 1211


>gi|212691048|ref|ZP_03299176.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855]
 gi|212666280|gb|EEB26852.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855]
          Length = 1350

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KV++VED+E   +     + +  Y  L++ NG EALE      PD++I D+ + E+ GL 
Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  +IK++  L  IPVI +TA   + D     + G +AY++KP  + I  +T    I 
Sbjct: 1150 LCHKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1207


>gi|254413753|ref|ZP_05027522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196179350|gb|EDX74345.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1022

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 69/118 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +N +L   L++  G+      NG  A+ L ++ +P++I MD+ +  + G +
Sbjct: 810 RILVVEDHLVNRQLLVTLLKEVGFQVKSAENGQAAIALWQKWQPELIFMDMHIPIMDGYQ 869

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+QIK+ +     P+IA+TA A     E     GC+A+ISKP  L   +E I +Y+G
Sbjct: 870 ATRQIKQSNFATIPPIIAITASAFAHKREECLTAGCDAFISKPFHLEEILEIISQYLG 927


>gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 225

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K +IVED+EL ++         G+     ++G +AL+ A+ +  D+II+D+ + +I 
Sbjct: 1   MSLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ KQ++  SE   IP+I +TA +   D+    + G + YI+KP S    +  +K  +
Sbjct: 61  GVKVCKQLRLQSE---IPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 248

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 24  KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 84  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139


>gi|56552073|ref|YP_162912.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762025|ref|ZP_04760109.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|4511977|gb|AAD21537.1| aerobic respiration control protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543647|gb|AAV89801.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373491|gb|EER63078.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 241

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + +MIVED+     L   +++ +GYI     +G E  E  +    D+I+MD+ L   +G
Sbjct: 3   SQTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTVDLILMDVMLPGKNG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++T++++ +S+   IPVI ++A   + D     + G + YI KP      +  ++  + 
Sbjct: 63  LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122

Query: 122 EA 123
            +
Sbjct: 123 RS 124


>gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51]
 gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I++D    ++     +   G+      +GM  + LA+Q  P ++I+DI +  + G E
Sbjct: 8   KILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMMPGMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +K+   +    +I +TA     D  +    G + Y++KP S    +  I   I 
Sbjct: 68  VCRMLKKSENVS---IIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIR 122


>gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
 gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
          Length = 228

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED    ++  +  +E  G+  L   NG +ALE AR+ +P ++++D  L   S
Sbjct: 1   MEMTLLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARREQPALVVLDWMLPGKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K++++ S      +I VTA + + D+    + G + YI+KP SL      I+  +
Sbjct: 61  GIEVCKELRQSSACG---IIMVTAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|329963860|ref|ZP_08301202.1| response regulator receiver domain protein [Bacteroides fluxus YIT
            12057]
 gi|328527113|gb|EGF54119.1| response regulator receiver domain protein [Bacteroides fluxus YIT
            12057]
          Length = 1342

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++++DN   + L ++ +    Y  +   N  E L++ ++  PD+II D+ +    G+E+
Sbjct: 1085 ILVIDDNAEILTLLQEALSE--YKVVTATNSEEGLDMLKKEYPDLIITDVMMPGTDGIEL 1142

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+QIK++     IP++ ++A     ++      G +AYI KP +L+     + + I
Sbjct: 1143 TRQIKQNKHTMHIPLVILSAKNTNEEKIEGLDSGADAYIGKPFNLNYLKAIVSRLI 1198


>gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
 gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 57/121 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED      L    ++ +G+     +N   A ++ R   PD++++D  L +  G+
Sbjct: 4   ARILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRARLPDLMVLDWMLPDCDGV 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +++  +    +P+I +TA +   D+E     G + Y++KP S    +  I   +  
Sbjct: 64  SWIAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHARLRR 123

Query: 123 A 123
           A
Sbjct: 124 A 124


>gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
 gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
          Length = 248

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED      L  + +E +GY  +   +G+  L L + H  D++I DI L ++ G
Sbjct: 21  MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 80

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++ +    IP++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 81  FELAKEIRKTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 138

Query: 122 E 122
            
Sbjct: 139 R 139


>gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +L    +  +G+  +    G +AL   R+  P +I++D+ L +  G E
Sbjct: 6   RLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDFDGFE 65

Query: 64  ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++           PV+ +TA     D     + G + Y++KP +L   +  I+  +
Sbjct: 66  VVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 248

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 24  KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 84  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139


>gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus LMG 18311]
 gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus CNRZ1066]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED     +     ++  GY  +   NG E LE+A +   D+I++D+ L E+ 
Sbjct: 1   MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++++   ++  ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQQE---KDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|310828574|ref|YP_003960931.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740308|gb|ADO37968.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 232

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I++D+     L    +   G+ A    +G E LE   +  P ++++D+ +  + 
Sbjct: 1   MKNRIIIIDDDPKLCALLEKCVTCDGFEAACASDGREGLEKLEEGSPVLVVLDVMMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+E      +PV+ +TA     D+    + G + Y++KP  ++ F   +   +
Sbjct: 61  GFEVLRKIRE---TSAVPVLMLTARDDNIDKVYGLRLGADDYLTKPFDINEFSARVHSLV 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|255532713|ref|YP_003093085.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255345697|gb|ACU05023.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
            2366]
          Length = 1374

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++V+DN   +   ++      Y      +G EAL L  + + D+II D+ + E+ G+ 
Sbjct: 1122 KLLVVDDNPEIVDYLKNYFSNI-YQVSVAYDGKEALGLLDEEQVDLIICDVMMPELDGIH 1180

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              K+IK++     IPV+ +TA      + +  + G + Y++KP S+++    ++  I  +
Sbjct: 1181 FCKKIKQNIRTCHIPVVLLTAKNETNHQIKGLEVGADDYVTKPFSIALLEAKLQN-ISRS 1239


>gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
 gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
          Length = 230

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|209524850|ref|ZP_03273396.1| response regulator receiver protein [Arthrospira maxima CS-328]
 gi|284050500|ref|ZP_06380710.1| response regulator receiver, CheY [Arthrospira platensis str.
           Paraca]
 gi|209494729|gb|EDZ95038.1| response regulator receiver protein [Arthrospira maxima CS-328]
 gi|291568065|dbj|BAI90337.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 121

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +M+VED+    ++  +L+  SG       +G+EALE  +Q  PD++++DI +  ++G
Sbjct: 1   MNTIMVVEDSVTQREMISNLLRESGLKVAVASDGVEALEQVQQISPDLVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + Q+I ++  ++   + D     K G +AYI+KP   +  + T+K+ + 
Sbjct: 61  YELCRRLKSDPKTQKIAIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120


>gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 228

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   Q K D++I+DI +  + G ++
Sbjct: 8   ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 68  CFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122


>gi|154244330|ref|YP_001415288.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158415|gb|ABS65631.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M ++ +++VED+     L  D +   GY  L   +G     L    +PD++++D+ L   
Sbjct: 1   MAQRTLLLVEDDREIRSLLADFLGREGYGVLAAEDGAAMDRLLATTRPDLVVLDLMLPGE 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL I ++++  S L   P++ +TA A   D     + G + Y+ KP +    +  I+  
Sbjct: 61  DGLSICRRLRARSGL---PILMLTAKADDVDRIVGLEMGADDYLVKPFNPRELLARIRAV 117

Query: 120 IGEA 123
           +  A
Sbjct: 118 LRRA 121


>gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 223

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +    ++   GY      +G +  +LA Q+  D++I+D  L    GL 
Sbjct: 2   KILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTYDLLILDWMLPGKPGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++   +    PV+ +TA     D       G + Y+ KP  L   M  ++  +  +
Sbjct: 62  ICRELRSRGKT--TPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRS 119


>gi|23012559|ref|ZP_00052614.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 511

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDN  N K+   L+   G+      NG+EALE  +  + D+I+MD+Q+ E+ G E 
Sbjct: 276 ILLAEDNVFNQKVAAGLLNREGHRVTLANNGLEALEKLQDGRFDLILMDMQMPEMDGPEA 335

Query: 65  TKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+     L  IP+IA+TA AM  D  R R  G + +++KPI   +    I + +  
Sbjct: 336 TRRIRGLPGALAAIPIIALTANAMADDVARCRAAGMDGHVAKPIDPLLLRAAIAEVLPR 394


>gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++ED E   ++ +  +E   Y      +G + LE+A+  + D++++D+ L  ++
Sbjct: 1   MNERILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLPGLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++      +PVI +TA     D+    + G   Y++KP ++   +  ++  +
Sbjct: 61  GIEVLRRLRQGGNT--VPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNIL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|297161562|gb|ADI11274.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1400

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60
            +++++V+D+  N+     ++   G       NG E LE+  ++ PD  +++MD+ + E+ 
Sbjct: 1254 RRILVVDDDIRNVFALTHVLGRVGMTVKYAENGREGLEVLSRN-PDVSLVLMDVMMPEMD 1312

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E  + I+    L ++P+IA+TA AM GD E+    G   Y+ KP+ +   +  +   +
Sbjct: 1313 GYETIRAIRGTPRLADLPIIALTAKAMPGDREKAIDSGANDYVPKPVDVDRLLSAVCDLL 1372


>gi|281411689|ref|YP_003345768.1| response regulator receiver protein [Thermotoga naphthophila
           RKU-10]
 gi|281372792|gb|ADA66354.1| response regulator receiver protein [Thermotoga naphthophila
           RKU-10]
          Length = 122

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D+ +  K+    ++  GY  ++  NG  ALE   +  PD+I++DI +  + 
Sbjct: 1   MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLLEFAPDLIVLDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++E  E + IPVI +TA   + DE      G +  + KP S S F+E +K  +
Sbjct: 61  GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGAKKVMRKPFSPSQFIEEVKHLL 120

Query: 121 GE 122
            E
Sbjct: 121 NE 122


>gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 230

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+   ++    L+E  GY  L+  +GM+ALEL  + K  ++IMD+ + ++ GL  
Sbjct: 5   ILVVDDDREIVRAIAILLEKEGYQVLKAYDGMQALELIAEQKVHLVIMDVMMPKLDGLSA 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+E    + IP+I ++A +   D+      G + Y++KP +       +K ++  
Sbjct: 65  VLKIRER---KNIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRR 119


>gi|224540196|ref|ZP_03680735.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224518186|gb|EEF87291.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1316

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN   +   +  +  + +  +  +NG EALE+  +    +++ D+ + E+ G+E
Sbjct: 1066 TILLVDDNVEILTYLQKKLSRN-FKVITAQNGREALEVLGKENMSLVVSDVMMPEMDGME 1124

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   IKE+     +PVI +TA +M    E   + G + Y+ KP  +S  +  I   +
Sbjct: 1125 LCTYIKENPSFCHLPVILLTAKSMTMYVEEGFQAGADDYLVKPFKVSTLIVRINNIL 1181


>gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 250

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 66/126 (52%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56
           ++++VED ++   +    +E  GY  +   +G  AL L +       +   D++++D+ L
Sbjct: 20  RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +++GL+I + ++ ++ +  +P++ ++A A + D     + G + Y++KP S+   +   
Sbjct: 80  PQVNGLDICRLLRYNNNI--VPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  I  
Sbjct: 138 RALIRR 143


>gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 228

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+     +    +   G+  L+  +G EA++L  Q + D++I+D+ +  + G++ 
Sbjct: 4   ILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEVDLVILDVMMPRMDGIKA 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              I+E      +P+I ++A     D+      G + Y++KP +    +  +K  +  
Sbjct: 64  CMHIREQ---YSVPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQLRR 118


>gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 235

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D +  + L    +   G+I  +  +G  AL LAR  KPD++I+DI L  + G+
Sbjct: 4   ATILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALARSVKPDLVILDIMLPGLDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +Q+  ++    + V+ +TA A + D+      G + Y++KP S    +  +K  +  
Sbjct: 64  EVCRQLHRET---TVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120


>gi|145221593|ref|YP_001132271.1| multi-sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK]
 gi|145214079|gb|ABP43483.1| multi-sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK]
          Length = 1161

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V++V+D+  N+      ++  G   L  RNG   L+   +H    +++MDI +  + G 
Sbjct: 1031 TVLLVDDDVRNVFSLGSALKRYGITVLPARNGQAGLDALGEHPEVGLVLMDIMMPVMDGY 1090

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  ++I+ +   + +P++A+TA AMKGD ++  + G   Y++KP+ +      ++ ++  
Sbjct: 1091 EAMRRIRAEPRWRHLPIVALTAKAMKGDRQKCLEAGASDYVTKPVDMDQLTSVLRVWLAG 1150

Query: 123  A 123
            A
Sbjct: 1151 A 1151



 Score = 83.6 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IVED+    ++   L   +G+ ++ T +G  AL LA+QH+P  I +DI L +++G  + 
Sbjct: 764 LIVEDDPTFARMLSGLAAEAGFDSVITASGRMALALAKQHQPAAITLDIGLPDMAGWVVL 823

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
             +K D   + IPV  V+      D+ R  + G    ++KP  +S    
Sbjct: 824 DVLKHDLATRHIPVNVVSG---TEDDGRGMRMGAIRTVNKPAEISDLRS 869



 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           + V++ ED+    ++ + +IE+          G + L+        D +++D+ L +I G
Sbjct: 883 RHVLVAEDDANQRQVVKHMIESDDIAITCVGTGAQVLDELSGGTSYDCLVLDLGLPDIDG 942

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
           +++ ++IK+  + + +PVI  T   +   E    +    A + K
Sbjct: 943 IDLIERIKDQLKEKRLPVIVHTGRELTAVETERLENLAAAIVLK 986


>gi|114565936|ref|YP_753090.1| sensory box histidine kinase/response regulator [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114336871|gb|ABI67719.1| Hpt sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 497

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 75/117 (64%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN LN K+   ++   G+  +   NG+EAL + +    ++++MD+Q+  + G E
Sbjct: 280 RVLLVEDNPLNQKIVGQMLYNYGFEVIMASNGLEALRILQDKPVNIVLMDMQMPVMDGYE 339

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I++ S+ ++IP+IA+TA ++ GD E+    GC +YI+KP      ++ +K+YI
Sbjct: 340 ATQFIRQHSKWRDIPIIAITAHSLPGDREKCLACGCTSYIAKPFKAHELVQLMKEYI 396


>gi|325914828|ref|ZP_08177163.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
 gi|325538919|gb|EGD10580.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1056

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   + + D+++MDI + E+ G+
Sbjct: 936  ATVLLAEDDVRNIFALSSVLEPLGVTLEIARNGREALERLAEREVDLVLMDIMMPEMDGI 995

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               ++I+ + + Q++P+IA+TA AM  D ER  + G   YI+KPI +   +   + +   
Sbjct: 996  TAMREIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1055



 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    +   DL     +  +   N  EAL+LA + +P  I++DI L + SGL +
Sbjct: 670 ILAVEDDTRFSQALVDLAHEMDFDCVVAPNAEEALQLAAELRPSGILLDIGLPDASGLSV 729

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + IPV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 730 LERLKRDPATRHIPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 781



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+    +  + L+       +   +  EA+        D ++ D+ L + SG 
Sbjct: 790 RRLLIVEDDSALRENLQLLLARDQLDIVAVGSIAEAMAQLASSTFDCMVTDLALPDGSGY 849

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 850 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQRLRRYSKSIIIKGVRSPERLLDEVTLFLH 909

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 910 SVEASLPSDQQRLLREA 926


>gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 224

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D+     L +  +   G+      +G EAL++AR+  PD++I+DI +  + G
Sbjct: 1   MDRILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110
           +E+ ++++      E+PV+ +TA     D+ R  + G + Y+ KP +  
Sbjct: 61  MEVLRRLRAAD--PELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFE 107


>gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  ++     A     G E L+  R+ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|169837234|ref|ZP_02870422.1| two component transcriptional regulator, winged helix family
           protein [candidate division TM7 single-cell isolate
           TM7a]
          Length = 129

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++++ED+    +L    ++  G+      +G E L +A+    D+I++D+ L ++S
Sbjct: 13  MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 72

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ K+I+E     ++P+I +TA     D+      G + Y++KP S    +  IK  +
Sbjct: 73  GMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALL 129


>gi|39936632|ref|NP_948908.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192292455|ref|YP_001993060.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39650488|emb|CAE29011.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192286204|gb|ACF02585.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 240

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     L    +  +        +G E       H+ D++++D+ L    GL +
Sbjct: 8   ILVVEDDRETRALIAKYLRANNCNVATAADGREMERWIADHRVDLVVLDVMLPGEDGLSL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +S L   P+I +TA     D     + G + Y+ KP +    +  I+  +  
Sbjct: 68  CRKIRANSAL---PIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRR 122


>gi|110638476|ref|YP_678685.1| sensor histidine kinase/response regulator fusion protein [Cytophaga
            hutchinsonii ATCC 33406]
 gi|110281157|gb|ABG59343.1| sensor histidine kinase/response regulator fusion protein [Cytophaga
            hutchinsonii ATCC 33406]
          Length = 1158

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
             KKV++V+D+  N+    + +E          NG  AL++  ++   ++++MDI + E+ 
Sbjct: 1037 SKKVLVVDDDIRNVYSLTNALEEEEMTCFIAENGKIALQVLTENPSIEIVLMDIMMPEMD 1096

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E TK I+   +  +IP+IA+TA AMKGD E+    G   YISKPI++   +  ++ ++
Sbjct: 1097 GYEATKAIRNMPQFDKIPIIAITAKAMKGDREKCLAAGMSDYISKPINMEQLLSLLRVWL 1156



 Score =  105 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED+ +  KL  D +    Y  +    G   L  ARQ+KPD I++D++L  + G E+
Sbjct: 772 VLLMEDDIVFAKLMLDFLHERKYKGIIATRGNTGLSYARQYKPDAIMLDMKLPVMDGAEV 831

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            KQ+K D  L+ IPV  ++ +     +    + G   YI KP++  + ++ 
Sbjct: 832 LKQLKNDPALRHIPVQIISGYDR---KREGLELGAFDYIRKPVTKEVLLKA 879



 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 56/103 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VEDNE      R+L+      +     G EA E+  + + D II+D+ L ++SG 
Sbjct: 892 KKLLVVEDNETQNTAIRELVGNGDVKSYSAYTGKEAYEMLLKDEYDCIIVDLGLPDMSGF 951

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
           ++ +QIKE  E++ IP+I  T   +  DE+ +      A + K
Sbjct: 952 DLIEQIKEKPEIKGIPIIVYTGRDLTADEKNLLNKLASAVVLK 994


>gi|310820597|ref|YP_003952955.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393669|gb|ADO71128.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 971

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED          ++ TS Y  ++  NG E  + A Q  PD+I+ D+ +  +SGL+
Sbjct: 594 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQSAPDLIVSDVMMPVMSGLQ 652

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   ++E  E  +IPVI +TA     ++      G   Y+ KP S    +  I+  + 
Sbjct: 653 MLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLR 710


>gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 238

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++++D    +KL   +++  G+    + +NG E ++L +  KPD++++DI + ++ G
Sbjct: 8   RKILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEKPDIVVLDIMMPDMDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K I+       +PVI ++A +   D+      G + Y++KP S       IK ++ 
Sbjct: 68  FEVCKNIR---NFSFVPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|289662757|ref|ZP_06484338.1| two-component system sensor protein [Xanthomonas campestris pv.
            vasculorum NCPPB702]
          Length = 1057

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ D+++MDI + E+ G+
Sbjct: 937  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 996

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D ER  + G   YI+KPI +   +   + +   
Sbjct: 997  TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1056



 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    +   DL     +  +   N  EAL LA + +P  I++DI L + SGL +
Sbjct: 671 ILAVEDDTRFAQALVDLAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 730

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + +PV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 731 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRDLLAGAIRQL 782



 Score = 73.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+       + L+       +   +  EA+E       D ++ D+ L + SG 
Sbjct: 791 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMEQLAGSTFDCMVTDLALPDGSGY 850

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 851 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 910

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 911 SVEASLPSDQQRLLREA 927


>gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 243

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     ++  G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 77  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131


>gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 243

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGITA--PVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
 gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces clavuligerus ATCC 27064]
 gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+   M+L    +   G+    T +G  ALELA++++ D I++D+ L  ++GL 
Sbjct: 2   RILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVMLPGMNGLR 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+      PV+ +TA   + DE      G + Y++KP S    +  ++  +  
Sbjct: 62  VCARLRENRIW--TPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRR 118


>gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 223

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 2/115 (1%)

Query: 9   EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68
           ED+        D +   GY     R+G +AL + RQ +PD++++DI L   SG ++ +++
Sbjct: 2   EDDAHIRLGLCDALRGEGYEVSDCRDGAQALPIIRQRRPDLVVLDIMLPGKSGFDLCREL 61

Query: 69  KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +      P++ ++A   + D+    + G + Y++KP SL   +  ++  +  A
Sbjct: 62  RAEKNC--TPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRRA 114


>gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1932

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            KKV+IV+D+  N+     ++E      +   NG E + L       DV++MD+ + E+ G
Sbjct: 1812 KKVLIVDDDVRNIFALTSMLERYQMQVIYAENGREGISLLENTSDIDVVLMDVMMPEMDG 1871

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  + I++  + + +P+IA+TA AM+GD ++    G   YI+KP+     +  ++ ++
Sbjct: 1872 YETMQLIRKKEQFKALPIIALTAKAMQGDRDQCIAAGASDYIAKPVDTEQLLSLLRVWL 1930



 Score =  114 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+    ++  D+    G+  L  ++G   L+LA+  +P  I++DI+L E+ G  + 
Sbjct: 1547 LIIEDDVNFARILVDMARQHGFQVLTAQSGTAGLKLAKDFQPMAILLDIRLPEMDGWTVL 1606

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             ++K D   + IPV  +T   ++   +R  + G  AY+ KP++     E + K 
Sbjct: 1607 DRLKHDPTTRHIPVHIMT---VEEGRQRGLQLGAIAYLQKPVTSEAISEALDKI 1657



 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++VED+EL  +   +LI  S    +    G  ALE  R  + D +++D+ L +++G 
Sbjct: 1666 KNLLVVEDDELQRQSIVELIGNSDVATVAVGTGAAALEAIRTQQFDCLVLDLGLPDMTGF 1725

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ +QIK ++    +P+I  T   +  ++E   +   E  I K + S    ++
Sbjct: 1726 ELMEQIKREANGATLPIIVYTGREISKNQETELRRIAETIIVKDVRSPERLLD 1778


>gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 219

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED +   +     +    Y      +G   L+ A     D+II+DI L  I+G
Sbjct: 1   MANILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIMLPHING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I++       P+I +TA +   D+      G + YI KP  +      I+  + 
Sbjct: 61  LEICRRIRQQ---YTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 675

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 7/122 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           ++++ +D   N +L R ++  +G       NG+EA+   +          +I+MD+Q+ E
Sbjct: 535 RILVADDGIDNQRLLRQILTRAGADVTVAENGLEAVRAWQAANLAGCPFALILMDMQMPE 594

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G + T++++E      IP+IA+TA AM GD +   + GC+ Y++KP      +ET++K
Sbjct: 595 LDGYQATRRLRELGAT--IPIIALTAHAMTGDRDLCLQAGCDDYLTKPFERKRLLETLRK 652

Query: 119 YI 120
            +
Sbjct: 653 RL 654


>gi|168703357|ref|ZP_02735634.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1156

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 70/126 (55%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQL 56
            +++++VED+  N+     ++E  G I    RNG+EAL              D+++MD+ +
Sbjct: 1031 RRILVVEDDVRNVFALTSILEPRGAIVQIARNGLEALRALDGSAGHPDRSIDLVLMDVMM 1090

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ GL  T+++++    +++PVI +TA AMK D+E+    G   Y++KP+ +   +  +
Sbjct: 1091 PEMDGLTATRELRKKPAWKKLPVIMLTAKAMKDDQEQCLAAGANDYMAKPLDVEKLLSLV 1150

Query: 117  KKYIGE 122
            + ++  
Sbjct: 1151 RVWMPR 1156



 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED+    ++  DL    G+  L      E L +A Q++P  +++D+ L + SGL +
Sbjct: 765 ILIVEDDAPFARIVVDLAHELGFQCLVAATAEEGLAVAVQYRPSAVVLDVGLPDNSGLSV 824

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             ++K D+  + +PV  V+A       +     G   Y+ KP+        +++
Sbjct: 825 LDRLKRDARTRHVPVHVVSAGD---YAQTALALGAVGYMLKPVQREQLAGALQQ 875



 Score = 72.1 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           IVED+ +       L+ T+    +      E LE  +    D +++D+ L + SG  + +
Sbjct: 889 IVEDDPVQRDSLCRLLGTADVETVAVGTAAECLERLKTATFDCMVLDLSLPDASGYALLE 948

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            +  +      PVI  T  ++  DEE+  +
Sbjct: 949 TLSAEDAYSFPPVIVYTGRSLSADEEQKLR 978


>gi|108757005|ref|YP_628980.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108460885|gb|ABF86070.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 1967

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +KV++V+D+  N+     ++E  G       +  E L+   +    ++++MD+ + E+ G
Sbjct: 1832 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESAREGLDQLEKDADIELVLMDVMMPEMDG 1891

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +  + I+       +P++A+TA AMKGD E+  + G   YI+KP+ +   +  ++ ++
Sbjct: 1892 YQAMRAIRRMERFVHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 1950



 Score = 57.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED+ ++ +   +L+ +     +      EAL    + + D +++D+ L ++ G E+ 
Sbjct: 1689 LVVEDDPVHRQTLTELLGSDDVQTVAVGTAAEALAALAERRFDCMVLDLGLPDMPGTELI 1748

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            +++ E       P+I  T   +   +E   +   EA + K   S    +E
Sbjct: 1749 RRVHEAHGAGGPPLIVYTGRELTRAQETELRRVAEAIVVKDAQSPERLLE 1798



 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 18   FRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77
             R   + +G+  L +    +AL+  R  +P  + +D+ L E++G  +  ++K D+  + +
Sbjct: 1579 LRAAAQGTGFKLLVSTEVEDALDAVRNTRPAAVAVDLDLPEMAGWVVLDRLKHDASTRAL 1638

Query: 78   PVIAVTAFAMKGDEERIRKGGCEAYI 103
            PV  V+   ++   ER    G   ++
Sbjct: 1639 PVYTVS---VEDHRERSLNLGAIGHL 1661


>gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis]
          Length = 369

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++IV+D +  + + + ++E  GY   L   +  EA+ + + +K D+I++D+ +  +SG E
Sbjct: 138 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 197

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               I+E     + P+  +TA +   D+      G + YI+KP +       I+ ++  
Sbjct: 198 ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 253


>gi|330996468|ref|ZP_08320350.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
 gi|329573024|gb|EGG54643.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
          Length = 1328

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVED +      ++ +    +I     NG +AL+  R+   D++I D+ + E++G E+
Sbjct: 1056 ILIVEDEDSIRNFMKERLSPL-FIVETASNGKDALDTIRKEHIDLVISDVMMPEMNGYEL 1114

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               IK D  L  IP+I +TA      + +  K G EAYI KP S       I   +
Sbjct: 1115 CTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLL 1170


>gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 1136

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+D  +N+++ +++++  GY     RNG EAL    Q +PD+I++D+ +  +SGL++
Sbjct: 699 ILAVDDEPINLQVLQNVLQPQGYRVTTARNGTEALRNVAQDRPDLIVLDVMMAGLSGLDV 758

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++    L E+P+I +TA     D     + G   Y+ KP      +  I+  +
Sbjct: 759 ARDLRRRHGLHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLL 814


>gi|197104775|ref|YP_002130152.1| polar differentiation response regulator [Phenylobacterium zucineum
           HLK1]
 gi|196478195|gb|ACG77723.1| polar differentiation response regulator [Phenylobacterium zucineum
           HLK1]
          Length = 121

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 86/120 (71%), Positives = 105/120 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL+E  GY  ++TR G+ AL LAR+H+PD+I+MDIQL EIS
Sbjct: 1   MAKKVLIVEDNELNMKLFHDLLEAQGYEIIETREGLAALSLAREHRPDLILMDIQLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED EL +IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+S F+ETI++ +
Sbjct: 61  GLEVTKWLKEDDELAKIPVVAVTAFAMKGDEERIREGGCEAYISKPISVSHFLETIRRLL 120


>gi|166366087|ref|YP_001658360.1| CheY family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166088460|dbj|BAG03168.1| two-component response regulator CheY subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 121

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 68/121 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED++   +L  DL+  SG       +G+EALE  ++  PD++++DI +  ++G
Sbjct: 1   MSEILLVEDSQTQRELICDLLRNSGIKVTIATDGVEALEHIQRANPDLVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D + + +PV+  +      D     K G +AYI KP     F+ TIK+ + 
Sbjct: 61  YEVCRRLKSDPKTKNVPVVICSLKGEVFDRYWGMKIGADAYIVKPFEPIEFIYTIKQLLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|153953680|ref|YP_001394445.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346561|gb|EDK33097.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 237

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+ +V+D     ++ +  +E SGY      NG++A+ L  +  PD+II+D+ L +I G 
Sbjct: 10  KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I + +++ S+   +P+I +T    + D       G + Y++KP S    +  +K  +  
Sbjct: 70  DICEMLRKRSK---VPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRR 126


>gi|119899743|ref|YP_934956.1| pilus protein [Azoarcus sp. BH72]
 gi|119672156|emb|CAL96070.1| pilus protein [Azoarcus sp. BH72]
          Length = 121

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 60/116 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+        +L+   GY      +G EA+  ++  KPD+I+MD+ +  ++G +
Sbjct: 5   KILVVDDSPTERLALTELLTRHGYQVATAESGEEAITKSKSEKPDLILMDVVMPGMNGYQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I  D   + IP+I  T+  ++ D+    + G   Y+ KP+  +  +  IK  
Sbjct: 65  ATRTISRDDATRNIPIIMCTSKGLETDKIWGMRQGAYDYLVKPVEHNELLARIKSI 120


>gi|119486065|ref|ZP_01620127.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119456840|gb|EAW37968.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 479

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L  +++   GY      NG  AL      +PD+I++DI + E++G E+
Sbjct: 16  IVVVDDTPDNLRLLGNILRKEGYKVRLIPNGELALSGIELLRPDLILLDIMMPEMNGYEV 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K     +++PVI ++A     D+ +  + G   YI+KP  +   +  ++ ++
Sbjct: 76  CQHLKAREHSRDVPVIFISAIDEVSDKVKAFEAGGVDYITKPFQVQEVLVRVETHL 131


>gi|94264449|ref|ZP_01288238.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455139|gb|EAT05361.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 391

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
           +V++V+D   N++L  +++   G+       G EAL + R    PD++++D+ + E+ G 
Sbjct: 11  RVLVVDDQPPNIQLLAEVL-ADGHQVFIATGGAEALAICRAPKPPDLVLLDVVMPEMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K D     IPVI VTA     +E      G   YISKP S +I    ++  +
Sbjct: 70  EVCRRLKADEATSAIPVIFVTARDSAEEEVVGFAAGAVDYISKPYSPAIVRARVRTQL 127


>gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 254

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   Q K D++I+DI +  + G ++
Sbjct: 34  ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 93

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 94  CFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148


>gi|118577295|ref|YP_899535.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504800|gb|ABL01282.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 230

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +E +G+  L T  G EA+ L    +P ++++D+ L ++S
Sbjct: 1   MTSTILLVEDDARIAEVVIAYLERAGFKVLHTLTGREAMTLISTEQPALVVLDLMLPDLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I +++KE     +IPVI +TA + + +       G + YI KP S    +  ++  +
Sbjct: 61  GESICRELKE----CDIPVIILTAKSSEEERLAGFALGADDYIVKPFSPRELVARVQAVL 116

Query: 121 GE 122
             
Sbjct: 117 KR 118


>gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7]
 gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
           TA208]
          Length = 225

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D+    +L R ++E SG+   +  +G  A++L      D+II+D+ + ++ G E+
Sbjct: 4   ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++      +IP++ +TA     D+ +    G + Y+ KP         +K  +  
Sbjct: 64  SEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKR 118


>gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 228

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++IV+D +    L    ++  GY      N  +A E  + ++ D++++DI ++ ++G
Sbjct: 1   MKHILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEVDLLVLDIMMRGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ K+++      E+P+I V+A + + D     + G + Y++KP S+   +  IK  + 
Sbjct: 61  LDLCKKVR---MTSEVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 227

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   +++  G+ A    +G  AL+     +PD++++D+ L    
Sbjct: 1   MTHRVLVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+ +S    +P+I +TA +   D     + G + Y+SKP      +  I+  +
Sbjct: 61  GTVVCREIRRESG---VPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|239933024|ref|ZP_04689977.1| two-component system sensory histidine kinase [Streptomyces
            ghanaensis ATCC 14672]
          Length = 1332

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60
            + +++V+D+  N+     ++E  G+  L   NG + ++    + PD  +++MD+ + E+ 
Sbjct: 1212 RTILVVDDDARNLFALSGILELHGFRVLHAENGRKGIDQLVNN-PDVALVLMDVMMPELD 1270

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G   T +I+      E+P+IAVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1271 GYAATAEIRSMPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1330



 Score = 39.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 46   KPDVIIMDIQLQEISGLEITK---QIKEDSELQEIPVIAVTAFAMKGDEERIRKG---G- 98
                +++++ + E    E+T+    ++ DS L  +PV+  +        E   +    G 
Sbjct: 1104 PCHCVVLELGMAEE---EVTRFLEALRGDSALASVPVLVHSGHRADAAVEEALRARTEGT 1160

Query: 99   CEAYISKPISLSIFMETIKKYI 120
               ++S   SL    E I  ++
Sbjct: 1161 ALEFLS---SLDELRERIALHL 1179


>gi|237717798|ref|ZP_04548279.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229452897|gb|EEO58688.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1321

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+        L++   Y+     NG +AL +AR++ PD+I+ D+ + E+ G 
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   +K D E   IPV+ +TA   + D     + G +AYI+KP S+++    I+  +  
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|240144354|ref|ZP_04742955.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257203603|gb|EEV01888.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I+ED      L +D +E SG+      +G+  L+ A     D+ I+D+ L  I G
Sbjct: 1   MSKVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQI+E+   +  P++ V+A     D+ R    G + YI+KP S S  +  +K ++ 
Sbjct: 61  FEICKQIREE---KNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 1514

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN       + L++   Y+     +G+ ALE  +Q +PD+++ DI +  ++GL
Sbjct: 648 ARILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQRPDLLLTDIMMPRLNGL 706

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +Q++     Q++P+I ++A A +       +   + Y+ KP S    +  ++  +
Sbjct: 707 ALLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACL 764


>gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 248

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 24  KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      + PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 84  VLRALR---TAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139


>gi|332530643|ref|ZP_08406576.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332039926|gb|EGI76319.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 227

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IVED     +L    +  +G+      +G  A        PD++++D  L   SGL + 
Sbjct: 2   LIVEDEPAIAELIAVNLRHNGFQPTLALDGESAQREIDAMLPDLVLLDWMLPGASGLTLA 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + D   + +P+I +TA   + D       G + Y++KP S    +  I+  +  
Sbjct: 62  RRWRGDPRTKAVPIIMLTARGDEADRVAGLDAGADDYMAKPFSTKEMLARIRAVLRR 118


>gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185]
 gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IVED +  +K+  D +    ++  +  +G  ALE+  +H PD+I++DI L +++
Sbjct: 1   MTKKILIVEDEKNLIKVIEDTLLEESFLTYKALDGETALEMFYEHNPDLILLDINLPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+++S    IP+I +TA   + DE +    G + YI+KP SL +    IKK +
Sbjct: 61  GWEVCQNIRKES---NIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKML 117


>gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 224

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +      +  +E   Y      +G E L+LA +   D++++D  L +  GL 
Sbjct: 2   RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWMLPKKDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++E   +   P++ +TA     D       G + Y++KP + +  +  ++  +  +
Sbjct: 62  VLKELRERKNV--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRS 119


>gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
 gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  ++     A     G E L+  R+ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I+++  L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKEYSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 254

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+      +G++AL+   + K D++I+DI +  + G ++
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDV 93

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 94  CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148


>gi|307591954|ref|YP_003899545.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985599|gb|ADN17479.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 1035

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN         L+ +  +      NG  ALE+  Q  PD+++ D+ + E+ G  
Sbjct: 666 RILLVDDNADMRHYVSRLL-SERWQVETAANGAIALEMIAQQLPDLVLTDVMMPELDGFG 724

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +   ++ D   + IP+I ++A A K       + G + Y+ KP S    +  ++  +
Sbjct: 725 LLNTLRADPITKSIPIILLSARAGKEATIEGLEAGADDYLIKPFSTYELIARVQTQL 781


>gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 225

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED++         +   G+      +G + L+L R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|317052668|ref|YP_004113784.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316947752|gb|ADU67228.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 366

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++++ED+ +      +L+    Y     ++G E +  A +   D+++ DI + ++ G
Sbjct: 1   MRRILLIEDDPVLRHNMVELLTLENYDVDDAQDGEEGVRKALESHHDLVLCDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + +K       IP + +TA   K D  R    G + YI KP  +   ++ I+  + 
Sbjct: 61  YQVFEALKSHPRTASIPFLFLTAKVDKEDVRRGMVMGADDYIQKPAPIEELLQAIEVRLR 120

Query: 122 E 122
           +
Sbjct: 121 K 121


>gi|281425218|ref|ZP_06256131.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella oris F0302]
 gi|281400684|gb|EFB31515.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella oris F0302]
          Length = 1295

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 65/118 (55%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN   +      ++T      + R+G EAL L RQ +PD+++ D+ +  + G ++
Sbjct: 1033 VLVVDDNTDFLGFLHTSLQTYFRRVFRARDGKEALCLLRQQQPDLVVSDVMMPVMDGYQL 1092

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + IKED E+  IPV+ +TA +    +    K G +AYI+KP  + + +  I+  +  
Sbjct: 1093 CQTIKEDIEISHIPVVLLTAKSDAESQTIGYKLGADAYIAKPFDIELLLSVIEMQLRR 1150


>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1209

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 3/122 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++ EDNE+N  L   ++   G+      +G EA++   +   D+++MD+Q+  + GLE
Sbjct: 955  KILLAEDNEVNQLLAVRILSQEGHQVRGVHDGREAVDALARENFDLVLMDVQMPVMDGLE 1014

Query: 64   ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ I+   +   L   PVIA+TA A+KGD E+  + G ++Y+ KPI  +   + IK  +
Sbjct: 1015 ATRLIRAREQEEGLLRTPVIAITAHALKGDREKCLEAGMDSYVQKPIRKADLFKEIKAVL 1074

Query: 121  GE 122
            GE
Sbjct: 1075 GE 1076



 Score = 88.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
           KV+IV+DN  N  +  + +          ++G + L++            V+++D+ + E
Sbjct: 808 KVLIVDDNANNAGILEESLRYWWMQPAIAQSGGQGLKMLEHAASANDPFQVMLLDMHMPE 867

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           ++GL++ + +++     +  ++ +T+ A  GD  ++R  G +AY+ KP+  S  +  I
Sbjct: 868 MNGLDVLEAMQDMDPSVKPVILVLTSGAQLGDSRKLRTYGVKAYLFKPVKQSKLLGAI 925


>gi|254411882|ref|ZP_05025658.1| Adenylate and Guanylate cyclase catalytic domain protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196181604|gb|EDX76592.1| Adenylate and Guanylate cyclase catalytic domain protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 368

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 67/116 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D E    L R +IE  GY  L+  +G++ L L ++  PD+I++D  +  + G   
Sbjct: 16  VLIVDDEETQRLLMRRVIEKEGYQILEASDGLDCLRLCKKTSPDIILLDAMMPVMDGFTC 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K++ ++ ++PV+ +TA   K    +  + G   Y++KPI   + ++ +++ I
Sbjct: 76  CQQLKKNPKMSQVPVLMITALEDKKSVNQAFEAGATDYVTKPIHWPVLLQRVRRLI 131


>gi|189466029|ref|ZP_03014814.1| hypothetical protein BACINT_02393 [Bacteroides intestinalis DSM
           17393]
 gi|189434293|gb|EDV03278.1| hypothetical protein BACINT_02393 [Bacteroides intestinalis DSM
           17393]
          Length = 375

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 61/113 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +      NG +ALE   +  PD++++D+ + ++SG E
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVDKENPDLVLLDVMMPDMSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + + +K + +  +IP+I +TA     D  +  + G   +ISKP +    +  +
Sbjct: 71  VAQHLKANPKTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 123


>gi|182437261|ref|YP_001824980.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465777|dbj|BAG20297.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 250

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+    +  +  +E  GY      +G++ LE  R    D++I+D+ L E+ G+ +
Sbjct: 21  VLVVEDDATIRRAVQLALERYGYRVDVAADGLDGLEAFRAGAHDLLILDVMLPELDGIGL 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+E+S    +PV+ ++A     D     + G + Y+ KP+   + +  I+  +  A
Sbjct: 81  CRRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRA 136


>gi|88861388|ref|ZP_01136018.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Pseudoalteromonas
           tunicata D2]
 gi|88816654|gb|EAR26479.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Pseudoalteromonas
           tunicata D2]
          Length = 331

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D  +N+++ + L+    Y  +  ++G EAL+LA Q +PD+I++DI + +++G 
Sbjct: 9   QTLLLVDDEPVNLRILKQLLHPD-YQLIFAKHGEEALKLALQERPDLILLDIMMPDMTGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +Q+K+  E Q IPVI VTA + + DE      G   YI+KPIS ++    IK ++
Sbjct: 68  EVCQQLKQRPETQAIPVIFVTALSEEHDEAAGFAVGAVDYITKPISTAVVKARIKTHL 125


>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
 gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
          Length = 1763

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 73/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N ++  + +E  G +     NG  ALE   Q   D+++MD Q+  + G 
Sbjct: 1420 KRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMDCQMPVMDGY 1479

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+++++   L E+PV+A+TA AM GD+E     G   +I+KPI + I  +T+ +Y+
Sbjct: 1480 QATRELRKLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYL 1537



 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + R  +++ G+     R+GMEALE   +    + ++D ++ E+ G E 
Sbjct: 1281 VLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCAERDYRIALIDWKMPEMDGTET 1340

Query: 65   TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +++E   L++ P ++ V+A A     +++ + G   YI+KPIS S  ++ I   +G 
Sbjct: 1341 AARMRE---LKQPPLILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGR 1396


>gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 228

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED E        ++E  G+      +G  AL    +H  D+I++D+ L  +SG E
Sbjct: 5   RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGADLILLDLMLPGLSGTE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++  S    +PVI +TA   + D+    + G + Y++KP S    +  I+  +  
Sbjct: 65  VCRTLRARS---TVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRR 120


>gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1334

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDNE    L   L     Y   + ++G E  E  ++ +PD+++ DI + ++SG+E
Sbjct: 1085 KILIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK + E   IPVI +TA   +    +  K G + Y++KP ++          +
Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1200


>gi|327312954|ref|YP_004328391.1| response regulator receiver domain-containing protein [Prevotella
           denticola F0289]
 gi|326945707|gb|AEA21592.1| response regulator receiver domain protein [Prevotella denticola
           F0289]
          Length = 716

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN+      +  ++ + Y  L   +G + L+LA+++ PD+I+ D+ +  + GLE
Sbjct: 467 TVLVVDDNKDIRVYLQLTLQDT-YQVLLASDGRQGLQLAKENIPDLIVSDVMMPVMDGLE 525

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++IK+++    IPV+ +TA + +         G +AYI+KP S  +    I   +
Sbjct: 526 LCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKARIGNLL 582


>gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED     +L +D +E SG+  +    G   L+ A     ++II+D+ L  + G
Sbjct: 1   MSKILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLMLPNVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+++E    +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICKKVREK---KNTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 225

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED++         +   G+      +G + L+L R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676]
 gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676]
          Length = 243

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     ++  G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 77  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131


>gi|218886198|ref|YP_002435519.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218757152|gb|ACL08051.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 391

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           + V++V+D   N+ L  DL++ + Y      +G +AL +      PD++++DI +  + G
Sbjct: 13  RTVLVVDDTVDNLTLLSDLLKDT-YRVKVANSGEKALRILSSGSPPDLVLLDIMMPGMDG 71

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +++KE     ++PVI +TA + + DE    + G   YI+KPIS SI +  ++ ++
Sbjct: 72  YTVLRRLKELPGTADVPVIFLTALSEEDDERIGLELGAVDYITKPISPSIMLARVRTHL 130


>gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 250

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 66/126 (52%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56
           ++++VED ++   +    +E  GY  +   +G  AL L +       +   D++++D+ L
Sbjct: 20  RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +++GL+I + ++ ++ +  +P++ ++A A + D     + G + Y++KP S+   +   
Sbjct: 80  PQVNGLDICRLLRYNNNI--VPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  I  
Sbjct: 138 RALIRR 143


>gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS 60
           + +++IV+D+   +     L+E +GY   Q  +  +A    +  + P ++I+D+ L +  
Sbjct: 1   MSRILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLMLPDGD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI++  +   +P++ ++A     D       G + Y++KP + +  +  ++  +
Sbjct: 61  GFELCRQIRQGGQY--LPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAIL 118

Query: 121 GEA 123
             A
Sbjct: 119 RLA 121


>gi|114319518|ref|YP_741201.1| response regulator receiver protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225912|gb|ABI55711.1| response regulator receiver protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 121

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+  ++   R ++E  G+  ++  +G + LE AR   PD+I+MDI +  ++G
Sbjct: 1   MARILVIDDSPTDLHAIRSILEGEGHQLIEAGDGEQGLEQARSAHPDLILMDIVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T+++  D+E   IPVI V++     D    ++ G   YI+KP+     ++ ++  +G
Sbjct: 61  FQATRRLNRDAETASIPVIMVSSKDQATDRIWAKRQGAVDYIAKPVERDELLQKVRAVLG 120


>gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
 gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED     ++  + ++   Y      +G EAL+       D +I+DI + ++ GL 
Sbjct: 2   RILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIMMPKLDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +E    PV+ +TA     D  +    G   Y+ KP +    +  ++  + +
Sbjct: 62  VLRKMRNKNE--NTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRK 118


>gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 239

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VED           +   G+ A    +G  A++ A +  PD+IIMD+ L  + G+
Sbjct: 12  RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I        IPV+ +TA   + D       G + Y+SKP S+   +  ++  +  
Sbjct: 72  EATKRI---EAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 128


>gi|85705604|ref|ZP_01036702.1| DNA-binding response regulator [Roseovarius sp. 217]
 gi|85670029|gb|EAQ24892.1| DNA-binding response regulator [Roseovarius sp. 217]
          Length = 241

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M+     ++IV+D+          +E +G  A    N +      ++ + D+I++D+ + 
Sbjct: 1   MMTQPPHILIVDDHREIRDALVKYLEKNGIRATSAANAVAMDVAMKEGQFDLIVLDVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
              GL + ++++       IP++ +TA   + D     + G + Y+ KP +    +  IK
Sbjct: 61  GEDGLSVCRRLRAQGG---IPILMLTALGDETDRIVGLEVGADDYLPKPFNPRELLARIK 117

Query: 118 KYIGEA 123
             +  +
Sbjct: 118 AILRRS 123


>gi|329955055|ref|ZP_08296036.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
 gi|328526345|gb|EGF53360.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
          Length = 390

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +      NG +ALE   +  PD++++D+ + ++SG E
Sbjct: 26  KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVEKEHPDLVLLDVMMPDLSGFE 85

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K + +  +IP+I +TA     D  +  + G   +ISKP +    +  +
Sbjct: 86  VAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 138


>gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564]
 gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564]
          Length = 232

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G EALE+ ++   D+II DI +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKPIDLIITDIMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++    +  + P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|293399972|ref|ZP_06644118.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306372|gb|EFE47615.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 226

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D      + R   E  GY   +  +GM+A+E  R+ + D+IIMDI +  + G
Sbjct: 1   MSKLLVVDDEAQIRNIIRKYGEFEGYEIAEAVDGMDAIEKCRKDQFDLIIMDIMMPNLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+I+E+      PVI ++A   + D     + G + Y+ KP S    M  +   + 
Sbjct: 61  FSAVKKIREE---ASTPVIMLSARGEEYDRIHGFETGIDDYVVKPFSPKELMMRVNAILK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
 gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
          Length = 236

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D          ++   GYI   T NG    ELA+    D++I+D  L E +GLE
Sbjct: 2   KILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++     + IPV+ +TA     D  +    G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQELRRQG--KNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRS 119


>gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1095

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VEDN +N  +   ++   G+      NG EAL+       D + MDIQ+  ++G++
Sbjct: 972  RLLVVEDNRVNRLMVARMLTMMGHAVETANNGEEALKTLETQPFDAVFMDIQMPGMNGVQ 1031

Query: 64   ITKQIKEDSELQ----EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T++I+E  +       IPVIA+TA AM GD E   +GG + YI+KP+ L+     + + 
Sbjct: 1032 ATRRIREADQGSGIDPAIPVIAITAHAMAGDREIFLEGGMDDYIAKPVELTELEAVLARL 1091



 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   ++I+ED+    +L    +E SG+      NG   L+     +   +++D+QL ++
Sbjct: 1   MKPDHILIIEDSPEFARLVAHHLEASGFSVHLAENGRAGLDAFGGRRFSAVLLDLQLPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            GL +   +        IP+I V+      D  +  + G   ++ K
Sbjct: 61  DGLAVLADM--ADRSDSIPLIVVSGSNGIEDAVQAVRRGAWDFVVK 104


>gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 223

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED     KL +D  +  G+   +  +G++ LE+ + +  D++I+DI +  + G ++
Sbjct: 3   ILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVFKNNNIDIVILDIMIPYLDGWKV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K I+   +L ++P+I +TA   + D+    + G + Y++KP S  + +  +K  +  +
Sbjct: 63  CKSIR---DLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRS 118


>gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
 gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
          Length = 241

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G   ++   +   D++I+DI + ++ 
Sbjct: 12  MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 71

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+   +  +K  I
Sbjct: 72  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGI 128

Query: 121 GEA 123
             +
Sbjct: 129 RRS 131


>gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + +I G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKIDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 227

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+    +     +   G+       G + L L    +P+++++D+ L  I+G
Sbjct: 1   MPRVLLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLMLPGING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ ++I+E S+   +P+I +TA     D     + G + YI KP    +    +K  + 
Sbjct: 61  VQVCRRIRESSQ---VPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
 gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
          Length = 231

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D++  ++     +   GY   +  +G+EAL++    +  +I+MDI + ++ G
Sbjct: 1   MYNILVVDDDKEIVESIEIYLRNEGYKVFKAYDGLEALDILTNEEIHLILMDIMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++ T +I+++   + IP+I V+A     D+      G + YI+KP +L   +  +K  + 
Sbjct: 61  IKATIKIRQE---KNIPIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|257095132|ref|YP_003168773.1| response regulator receiver protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047656|gb|ACV36844.1| response regulator receiver protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 120

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 61/117 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+D+     + + L+ ++GY  +   +G E +  A+   PD+I+MD+ +  ++G 
Sbjct: 4   KRILVVDDSPTERHVMKTLLSSNGYEVITAESGEEGIAKAKSELPDLILMDVVMPGLNGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + T+ +  D   + IPVI  T    + D+    + G + Y+ KP++    +  I   
Sbjct: 64  QATRTLTRDEATRNIPVIVCTTKGQETDKIWGLRQGAQDYLVKPVNGQELLAKIAAL 120


>gi|237713535|ref|ZP_04544016.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262407320|ref|ZP_06083868.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|229446517|gb|EEO52308.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262354128|gb|EEZ03220.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
          Length = 1353

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN          +    +  L   NG EALE  ++++ D+I+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRHYLSSGLSEL-FNTLDAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A +   D+    + G + YI KP SL+I    I+  + 
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220


>gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 231

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED     +    L++  G+      +G EAL    + +PD++++D+ L  +SG
Sbjct: 1   MTEVLIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAEPDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K I+       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCKNIR---LKSSVPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|189466459|ref|ZP_03015244.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM
            17393]
 gi|189434723|gb|EDV03708.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM
            17393]
          Length = 1316

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN   +   +  +  + +  +  +NG EALE+  +    +++ D+ + E+ G+E
Sbjct: 1066 TILLVDDNIEILTYLQKELSRN-FKVVTAQNGREALEVLGKKNVSLVVSDVMMPEMDGME 1124

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   IKE+  L  +PVI +TA +M    E   + G + Y+ KP  +S  +  I   +
Sbjct: 1125 LCTYIKENPSLCHLPVILLTAKSMTIYVEEGFQAGADDYLVKPFKVSTLIVRINNIL 1181


>gi|160933152|ref|ZP_02080541.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
 gi|156868226|gb|EDO61598.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
          Length = 232

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED+     L R  +ET  Y     +NG  AL     + PDV+I+D+ L ++ G++
Sbjct: 5   KVLVVEDDAAISNLIRTTLETQEYQYHTAQNGSGALMEVVSYHPDVVILDLGLPDMDGVD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I K+I+       +P+I V+A     D+      G + Y++KP S+  F+  ++  +  +
Sbjct: 65  IIKKIRS---FSTMPIIVVSARTEDQDKVDALDAGADDYLTKPFSIDEFLARLRVALRRS 121


>gi|149276155|ref|ZP_01882299.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232675|gb|EDM38050.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 633

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I EDN +N+KL   ++   GY A    +G EALE+    + D+++MD+ + E+ GLE
Sbjct: 506 RILIAEDNPINIKLATTILLKLGYQADVAHDGHEALEMCIAKRYDLVLMDVMMPEMDGLE 565

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            T+QI+   ++++  +IA+TA AMK D E+    G + Y+SKP+++++ M T++
Sbjct: 566 ATRQIR-LLDIKQPTIIAMTANAMKEDREKCLNAGMDEYLSKPLNMNLLMSTLE 618


>gi|170727318|ref|YP_001761344.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella woodyi ATCC 51908]
 gi|169812665|gb|ACA87249.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella woodyi ATCC 51908]
          Length = 369

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IV+D   N+ L  +L++ + Y      NG+ AL +  +   D+I++D+ + E+ G 
Sbjct: 13  KTVLIVDDTPDNLSLLHELLKDN-YHVKAAVNGVIALNIINKGGIDIILLDVMMPEMDGY 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K D E+ +IP+I +TA     DE      G   Y+SKPIS  + +  +K ++
Sbjct: 72  EVCRRVKADDEICDIPIIFLTAKTSIDDETMGFDLGAADYLSKPISPPLLLARVKTHL 129


>gi|114797342|ref|YP_762221.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737516|gb|ABI75641.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++IV+D E   +   +  E T G+ A+   +G EAL  A + + D++I+D+ +  ++G E
Sbjct: 7   ILIVDDEEDLRETLAEQFELTDGFTAMVAASGEEALRKAAEERVDLVILDVDMPGMNGRE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +Q++E      +PVI +T  + + D     + G   Y++KP S ++ +  ++  + 
Sbjct: 67  VCRQLREKGI--RVPVIMLTGRSGESDTVAGLEAGANDYVAKPFSFAVLLARVRSQLR 122


>gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R]
 gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium
           glutamicum]
 gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 74  VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRR 129


>gi|319901758|ref|YP_004161486.1| two component transcriptional regulator, AraC family [Bacteroides
            helcogenes P 36-108]
 gi|319416789|gb|ADV43900.1| two component transcriptional regulator, AraC family [Bacteroides
            helcogenes P 36-108]
          Length = 1361

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVED++      + +     Y  L   NG E ++ A + +PD+++ D+ +    G 
Sbjct: 1104 KTLLIVEDHKDIRLYLKVIFGKE-YNLLFATNGQEGIDTAVEGQPDLVLCDVMMPVKDGF 1162

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  +++KE      IP+I +TA     D     + G + Y+ KP +  I    ++  I
Sbjct: 1163 ECCRELKEGLSTCHIPIIMLTAKVEDDDILHGLELGADDYVLKPFTPGILQAKVRNLI 1220


>gi|319640287|ref|ZP_07995012.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388062|gb|EFV68916.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1346

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++ IVEDN        +      +      NG + LE A    PD+I+ DI +  ++G
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + +++KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207


>gi|313145398|ref|ZP_07807591.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides fragilis 3_1_12]
 gi|313134165|gb|EFR51525.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides fragilis 3_1_12]
          Length = 1361

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++I+EDN    +  R L     Y  L+  +G E +++A +  PD+II D+ +    G 
Sbjct: 1113 KTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKEIPDLIISDVMMPVKDGF 1171

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               ++I+E  E   IP++ +TA A   D  +  + G + Y+ KP +  +    ++  I
Sbjct: 1172 ACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLI 1229


>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 1052

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 20/139 (14%)

Query: 1    MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHKPDVIIMDIQL 56
            M +  ++++ EDN +N KL + +++ +GY      NG EA+E  +A ++   +I MD+Q+
Sbjct: 907  MKRSVRILLAEDNPVNQKLAKIMLKKAGYQVEVANNGREAIEILMASRNGFHLIFMDVQM 966

Query: 57   QEISGLEITKQIKEDSE----------------LQEIPVIAVTAFAMKGDEERIRKGGCE 100
             E+ G   T++I+                    +  IP+IA+TA AMKGD E     G +
Sbjct: 967  PEMDGFTATREIRRLESEHVLKPPQCTDFHASTIARIPIIAMTAHAMKGDREACIDAGMD 1026

Query: 101  AYISKPISLSIFMETIKKY 119
             YI+KPI        ++K+
Sbjct: 1027 DYITKPIKREGVFSIVEKW 1045



 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 68/134 (50%), Gaps = 14/134 (10%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
           KK ++V+DN+ N+K+    ++  G   +    G++ L L       Q   D+ I DIQ+ 
Sbjct: 751 KKALLVDDNDTNLKILAAYLKPVGIRLVLLNKGVDVLPLLESAIGEQDPFDICITDIQMP 810

Query: 58  EISGLEITKQIK--------EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109
            +SG E+ +QI+          + ++ +P++A+++     D +R R+ G + ++ KPI  
Sbjct: 811 IMSGYEVARQIRLFESPVSGLQTSIRSLPLMALSS-VRGQDAKRCREVGFDGFLGKPIRR 869

Query: 110 SIFMETIKKYIGEA 123
                 +++ +G A
Sbjct: 870 ERLYRMLERILGAA 883


>gi|294777704|ref|ZP_06743155.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448772|gb|EFG17321.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1346

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++ IVEDN        +      +      NG + LE A    PD+I+ DI +  ++G
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + +++KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207


>gi|284052262|ref|ZP_06382472.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 1066

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 65/116 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN    +    +++ +G+ A+  +NG +    A+ + PDVI+ D+ + ++SGLE
Sbjct: 846 TVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQTYHPDVIVTDLMMPQVSGLE 905

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + + I+   EL+  P+I +TA A +       + G +AY+SKP +    +  ++  
Sbjct: 906 LIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL 961



 Score = 88.3 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            +++V+D   N+ L         +  L+  +G  AL++  +  +  VII D ++  +SG 
Sbjct: 11  TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKK 118
           E    +        I +I +T +    D       G    Y++KP         +++
Sbjct: 70  EFLS-LTATQYPDSIRII-LTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQ 124


>gi|265753055|ref|ZP_06088624.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263236241|gb|EEZ21736.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1351

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++ IVEDN        +      +      NG + LE A    PD+I+ DI +  ++G
Sbjct: 1095 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1153

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + +++KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1154 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1212


>gi|254881285|ref|ZP_05253995.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254834078|gb|EET14387.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1351

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++ IVEDN        +      +      NG + LE A    PD+I+ DI +  ++G
Sbjct: 1095 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1153

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + +++KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1154 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1212


>gi|251793482|ref|YP_003008211.1| CpxR [Aggregatibacter aphrophilus NJ8700]
 gi|247534878|gb|ACS98124.1| CpxR [Aggregatibacter aphrophilus NJ8700]
          Length = 231

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+    +L   L++  G+      NG EAL L   H  D+I++DI +  ++G
Sbjct: 1   MAKILLVDDDAELTELLAQLLDLEGFEINVANNGKEALALL-DHSYDLILLDIMMPILNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  KQI++D      PV+ +TA     D     + G + Y+ KP +    +  IK  + 
Sbjct: 60  IETLKQIRKDF---STPVMMLTARGDDIDRILGLELGADDYLQKPFNDRELVARIKAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|237711636|ref|ZP_04542117.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229454331|gb|EEO60052.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1356

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++ IVEDN        +      +      NG + LE A    PD+I+ DI +  ++G
Sbjct: 1100 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1158

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + +++KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1159 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1217


>gi|237725922|ref|ZP_04556403.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435730|gb|EEO45807.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1344

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++ IVEDN        +      +      NG + LE A    PD+I+ DI +  ++G
Sbjct: 1088 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1146

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + +++KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1147 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1205


>gi|212695343|ref|ZP_03303471.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855]
 gi|212662072|gb|EEB22646.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855]
          Length = 1346

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++ IVEDN        +      +      NG + LE A    PD+I+ DI +  ++G
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + +++KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207


>gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1313

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N K+    +E  GY A    NG EA+         +++MD+Q+ E+ GLE 
Sbjct: 1185 ILLAEDNTVNQKVALRFLERLGYRADAVSNGQEAVTTLAARHYHLVLMDLQMPEMDGLEA 1244

Query: 65   TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            ++QI++       P ++A+TA AM+GD ER  + G + YISKP+ L      I++ 
Sbjct: 1245 SRQIRKKVPASRQPKIVALTANAMQGDRERCLEAGMDDYISKPVKLHEIEAAIRRL 1300


>gi|150003414|ref|YP_001298158.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931838|gb|ABR38536.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1346

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++ IVEDN        +      +      NG + LE A    PD+I+ DI +  ++G
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + +++KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207


>gi|319954447|ref|YP_004165714.1| transcriptional regulator, crp/fnr family [Cellulophaga algicola
           DSM 14237]
 gi|319423107|gb|ADV50216.1| transcriptional regulator, Crp/Fnr family [Cellulophaga algicola
           DSM 14237]
          Length = 355

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 59/117 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++EDN    ++  +++E   Y       G   +E A+   PD+I+ DI +  + G
Sbjct: 1   MKKILLIEDNLDVREMTAEILELENYEVATAEKGKIGIEKAKSFAPDLILCDIMMPIMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            E+ +Q+ +D      P I +TA + + D  +    G + Y++KP      +E I+ 
Sbjct: 61  YEVFEQLSKDHSTASTPFIFLTAKSERSDLRKGMTMGADDYLTKPFEAQDLIEAIEA 117


>gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8]
 gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8]
 gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 229

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++ +D++  ++L    I   GY  ++  +G EAL         D++I+DI +  + G+
Sbjct: 2   KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+++++S+   IP+I +TA     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  EVVKELRKESQ---IPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118

Query: 123 A 123
           +
Sbjct: 119 S 119


>gi|229590478|ref|YP_002872597.1| putative two-component system histidine kinase/response regulator
            fusion [Pseudomonas fluorescens SBW25]
 gi|229362344|emb|CAY49246.1| putative two-component system histidine kinase/response regulator
            fusion [Pseudomonas fluorescens SBW25]
          Length = 1184

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G + +  RNG EA++   +    D+++MD+ + E+ G
Sbjct: 1060 RKILLVDDDVRNIFALTSALEHKGAVVVIGRNGREAIDKLNEVDDIDLVLMDVMMPEMDG 1119

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T  I++D   +++P+IAVTA AMK D+ER    G   Y++KPI L      I+ ++ 
Sbjct: 1120 YEATALIRQDPRWKKLPIIAVTAKAMKDDQERCLAAGSNDYLAKPIDLDRLFSLIRVWLP 1179

Query: 122  E 122
            +
Sbjct: 1180 K 1180



 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 794 ILVVEDEPNFARILFDLAHELGYHCLVAHGADEGYSLAEEYIPDAILLDMRLPDHSGLTV 853

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D        G   Y  KP +     +   + 
Sbjct: 854 LQRLKEHANTRHIPVHVIS----VEDRVEAAMHMGAIGYAVKPTTREELKDVFARL 905



 Score = 75.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V++VED++L       LI              EAL+L R +  D +I+D++L ++ G 
Sbjct: 914  KRVLLVEDDDLQRDSIARLIGDDDIEITAVGFAQEALDLLRTNAYDCMIIDLKLPDMLGN 973

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
            E+ K++  +      PVI  T   +  DEE 
Sbjct: 974  ELLKRMATEDICSFPPVIVYTGRNLTRDEEA 1004


>gi|269926131|ref|YP_003322754.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789791|gb|ACZ41932.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 243

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+D+ L  KL   L+E  G+      +  +AL    Q  PD+I++D+QL  + G  +
Sbjct: 8   ILAVDDDPLTGKLIDFLLENEGHEVEIAADPSQALRALEQRTPDLILLDVQLPRMDGFTL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K IK+  +  E+PVI +TA A   D+    + G + Y+ KP   +  +  +K  +  A
Sbjct: 68  LKHIKK--QYPEMPVIMLTARAEMQDKLTGLESGADDYVVKPFEPAELVARVKSVLRRA 124


>gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 222

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++EDN    ++ +  +E +GY  L   +G+  L  AR+H PD++++D+ L +  
Sbjct: 1   MDQRILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGLPDFD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++      +P+I +TA      +  + + G + Y++KP      +  +K  +
Sbjct: 61  GAEVARRLRK---TSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
 gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
          Length = 260

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  ALE   Q   D++++D+ L  + G
Sbjct: 36  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGLPGMDG 95

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 96  LEVARRLRAEGL--PVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 153

Query: 122 E 122
            
Sbjct: 154 R 154


>gi|218130934|ref|ZP_03459738.1| hypothetical protein BACEGG_02536 [Bacteroides eggerthii DSM 20697]
 gi|217987278|gb|EEC53609.1| hypothetical protein BACEGG_02536 [Bacteroides eggerthii DSM 20697]
          Length = 390

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +      NG +ALE   +  PD++++D+ + ++SG E
Sbjct: 26  KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVDKEHPDLVLLDVMMPDLSGFE 85

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K + +  +IP+I +TA     D  +  + G   +ISKP +    +  +
Sbjct: 86  VAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 138


>gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 228

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I+ED+E    + +  +E   Y  L+  NG EA +   +  PD++I+D+ L +I G
Sbjct: 1   MEKILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQLVKQ-PDLVILDLMLPDIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I K I++       P+I +TA     D+      G + YI+KP +    +  +K  + 
Sbjct: 60  LSICKSIRKKYYY---PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|218781907|ref|YP_002433225.1| cyclic nucleotide-binding protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763291|gb|ACL05757.1| cyclic nucleotide-binding protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 884

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
            K++IV+D ++++ +    +    Y      NG EAL  A+   P D+I++D+ + E+ G
Sbjct: 6   AKILIVDDEKIHISVLTKFLSGD-YDVSIALNGAEALMRAKADPPPDLILLDVMMPEMDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++K D  L+ IPVI +T    + +  R  + G   +I KP   ++    I+ ++
Sbjct: 65  FEVCRRLKSDKSLKSIPVIFLTTKDDEENTARGFELGAVDFIRKPFRPAVLSARIRTHL 123


>gi|222055255|ref|YP_002537617.1| response regulator receiver protein [Geobacter sp. FRC-32]
 gi|221564544|gb|ACM20516.1| response regulator receiver protein [Geobacter sp. FRC-32]
          Length = 124

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 72/119 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK++IVED E  +KL   L+ + GY  +   +G  ALE  + ++PD++++D+ L E+ G
Sbjct: 3   SKKILIVEDEESLLKLESILLSSKGYSVVGVMDGKAALEEVKANRPDLVVLDVMLPEMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ + IKE+ E   IPV+ +TA     D ER ++ G EAYI+KP   +  +E I+  I
Sbjct: 63  FEVCRHIKENPETSSIPVVMLTAKKSNNDVERGKQAGAEAYITKPFKSAKVIEVIEGLI 121


>gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 514

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ EDN +N KL   L++  G      RNG EA+    +   D+++MD+ +  I GLE 
Sbjct: 396 VLLAEDNPVNQKLTTTLLDRWGQRVTLARNGAEAIAAVARDHFDLVLMDVHMPGIDGLEA 455

Query: 65  TKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+  S  + +IP+IA+TA  M GD       G + Y++KP+  +  +  + + I  
Sbjct: 456 TRRIRAMSGPVAKIPIIAMTADVMDGDAALCLDAGMDDYVAKPVEPTRLLAALHRAIRR 514


>gi|329851381|ref|ZP_08266138.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328840227|gb|EGF89799.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 122

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/119 (71%), Positives = 103/119 (86%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IVEDNELNMKLF DL++  GY   QT  G+ AL LARQH+PD+I+MDIQL EISGL
Sbjct: 4   KKVLIVEDNELNMKLFHDLLDAQGYETFQTGEGLSALTLARQHRPDLILMDIQLPEISGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+TK +KED EL  IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS++ F++T++KY+G
Sbjct: 64  EVTKWLKEDDELSHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVTHFLDTVRKYLG 122


>gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+IV+D +  + L    +E  GY      +G+E  E+A  H  D II+D+ L  + G
Sbjct: 1   MKKVLIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPYDFIILDLMLPSMGG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++I K+++++    E P++ +TA   + ++    + G + Y++KP S    +  +K  + 
Sbjct: 61  MDICKKLRQEKI--EAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|253570109|ref|ZP_04847518.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251840490|gb|EES68572.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1511

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+      R +  ++ Y  ++  +GME    A ++ PD+II D+ + E  G+E+T
Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASDGMEGWSKALKYLPDIIISDVMMPEKDGIEMT 1294

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1295 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1349


>gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 1032

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+DNE N  + + L+   G  +   ++G EA+  A + + D+I MD  +  + G E
Sbjct: 781 KVLVVDDNETNRMVAQKLLLKFGVDSEVRKDGEEAVAAAVEKRYDLIFMDCMMPNMDGYE 840

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+ DSE    ++ P++A+TA AM+GD E+  + G   YI+KPI  +     +K++I
Sbjct: 841 ATQLIRGDSEGSQNRDTPIVALTANAMEGDREKCIRVGMSDYIAKPIRPAELRRVVKQWI 900

Query: 121 GE 122
           GE
Sbjct: 901 GE 902


>gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  ALE       D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRSEGHT--VPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|13473723|ref|NP_105291.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14024474|dbj|BAB51077.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 230

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++ +D+    ++    +E +G   L   +G  AL+   +  PD++++DI + E+ 
Sbjct: 1   MPHHILVADDDPHIREVICFALEKAGMKTLGVADGAAALQEIGRRAPDLVVLDIGMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++      ++PV+ ++A   + D     + G + Y++KP S    +  +   +
Sbjct: 61  GLEVCRRLR---HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVIL 117


>gi|16330586|ref|NP_441314.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1653077|dbj|BAA17994.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 368

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
             +++V+D   N+ L   L++   Y      NG +AL++A+    PD+I++DI +  I G
Sbjct: 11  ATILVVDDTPDNLALMSGLLKDY-YRVKIANNGEKALKVAQTLPPPDLILLDIMMPGIDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   +K +   Q IPVI +TA +   DE +    G   YI+KP+S  I M  +   +
Sbjct: 70  YEVCAHLKANPATQRIPVIFLTAKSEIEDERKGLALGAVDYITKPVSPPILMARVNTQL 128


>gi|15604107|ref|NP_220622.1| response regulator PleD [Rickettsia prowazekii str. Madrid E]
 gi|3860799|emb|CAA14699.1| unknown [Rickettsia prowazekii]
 gi|292571833|gb|ADE29748.1| Regulatory components of sensory transduction system [Rickettsia
           prowazekii Rp22]
          Length = 450

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 63/118 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D I++D+ + E+ G
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALSILKKEKIDTILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D     IPV+ +TA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  FEVCKMIKTDPGTTHIPVVMITALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  +++ D++I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIKQMLVKVTKHVKVINNSNE-LDIINEYRSDLVIISSTLENEDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  +  +  I+  +  
Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFIYPIEENELLARIRTQLRR 270


>gi|87303319|ref|ZP_01086112.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87282214|gb|EAQ74175.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 400

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++++D+ +   +   L++  G   L   +G   LELAR+H+P +++ D  +  + GLE
Sbjct: 14  TILLIDDDRILQHILSGLLKAQGCQVLTATDGSTGLELARRHRPQLVLCDWSMAGMDGLE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + ++ K+D+ L  I  I +T+ +   +       G + ++SKP+  S  +  ++  + 
Sbjct: 74  VCRRFKQDTHLAPIYFILLTSRSSLVERVEGLDAGADDFLSKPVEPSDLLARVRSGLR 131


>gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
 gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+E   ++   +++  G+       G  ALE  R+  PD++++D+ L  I 
Sbjct: 1   MKARILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAFRESNPDLVLLDLMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ K I   S   ++PV+ +TA +   D  R  + G + Y+ KP   +  +  ++  +
Sbjct: 61  GIKVCKLI---SAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|293369031|ref|ZP_06615630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292635903|gb|EFF54396.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1321

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+        L++   Y+     NG +AL +AR++ PD+I+ D+ + E+ G 
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   +K D E   IPV+ +TA   + D     + G +AYI+KP S+++    I+  +  
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 241

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  +++    A     G E L+  ++ +  ++++D+ +  + G
Sbjct: 12  MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 71

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 72  FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 128

Query: 122 E 122
            
Sbjct: 129 R 129


>gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36]
 gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36]
          Length = 234

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED +    L R  +E  G       N  +A +  R +   +I++D+ L ++ 
Sbjct: 1   MDTHVLVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQLRDNVFQLILLDLNLPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I K+I+ +  +  +P++ +TA   + D  +  + G + Y++KP S+      +K  +
Sbjct: 61  GLDICKKIRINDAI--VPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|94500875|ref|ZP_01307401.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
 gi|94426994|gb|EAT11976.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
          Length = 294

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           +  ++IV+D   N+ L    +E   Y  ++  NG +AL+L + H   D++++D+++ ++S
Sbjct: 1   MTHILIVDDVASNLVLLGSHLEDQDYSVIEATNGPQALDLLQSHDDIDLVLLDVEMPKMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++IK+D +++++PVI VTA     +       G   Y+ KP SLS+ +  ++  +
Sbjct: 61  GLEVLRKIKQDEQIKDLPVILVTANGDDQNVVDGLDLGAVDYVIKPYSLSVLLARVRSAL 120

Query: 121 GE 122
            E
Sbjct: 121 RE 122


>gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824]
 gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018]
          Length = 229

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+   + L    +   GY  ++  NG EA+      KP ++I+D+ L +I G
Sbjct: 1   MLKILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVMLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+E      +P+I ++A     D+ +    G + YI+KP +   F+  +K  + 
Sbjct: 61  IEVCRKIREKL---NVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|317495700|ref|ZP_07954065.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914153|gb|EFV35634.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 229

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+++V+D     ++ +  +E  GY      +G EALE  +++K  +II DI +  + 
Sbjct: 1   MVNKILLVDDEIEITEINKRYLEQDGYDVDIANDGKEALEKYKKNKYSLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  +++   E Q  P + +TA   + D+      G + YI KP S    +  +K  +
Sbjct: 61  GYDLISEVQYLDEEQ--PFLFITAKTTEPDKIYALSLGADDYIVKPFSPRELVLRVKNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
 gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
          Length = 223

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++  ED     ++    ++  G+     R+G EAL+       DV+I+DI +  I GL 
Sbjct: 2   RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++        PV+ +TA     D       G + Y++KP   +     I+  +  
Sbjct: 62  VLRTLRSRGNTA--PVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118


>gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 252

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 26  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 85

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 86  VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 141


>gi|253987643|ref|YP_003038999.1| osmolarity response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779093|emb|CAQ82253.1| transcriptional regulatory protein ompr [Photorhabdus asymbiotica]
          Length = 239

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    +I++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESISLIVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  VCQRLRNQNN--SVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|255035362|ref|YP_003085983.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948118|gb|ACT92818.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1378

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN+   +  +++ +   Y  ++  NG   LE+A +H PD+I+ D+ + E+ G E+
Sbjct: 1128 VLLVEDNDEFREYLKEVFQKD-YRIIEAANGKIGLEMALEHVPDLIVSDVMMPEMDGTEL 1186

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + IK D  +  IPV+ +TA A +  + +  + G +AY++KP  L I    I   I +
Sbjct: 1187 CRTIKTDRRISHIPVVLLTARAEEEQQLQGYQTGADAYVTKPFRLDILQVRIANLISQ 1244


>gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 236

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++   +     +++ GY+  Q  +G+E L+    ++ D+ I+D+ + ++ G+ 
Sbjct: 5   RILLVEDDKEIREGVEIFLKSQGYVVFQAADGLEGLKALEDNEIDLAIVDVMMPKMDGIT 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +T +++E  +    PVI ++A + + D+      G + YI+KP +    +  +  ++  
Sbjct: 65  MTAKLREKYDF---PVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRR 120


>gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 230

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I+ED+        +++++  Y       G +A+E   +  P +I++D+ L  +S
Sbjct: 1   MKTRILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNRLHPALIVLDVMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ KQ++        P++ +TA   + D+      G + Y++KP  +   +  I+  +
Sbjct: 61  GYDVCKQLRAKKI--NTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 228

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D+     L    +E +G+      +G   L        D +++D+ +  + 
Sbjct: 1   MALRLLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++ S    +P++ +TA   + D     + G + YI+KP S    +  ++  +
Sbjct: 61  GIEVVRRIRQKS---SMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|115380175|ref|ZP_01467204.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362817|gb|EAU62023.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
          Length = 946

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED          ++ TS Y  ++  NG E  + A Q  PD+I+ D+ +  +SGL+
Sbjct: 569 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQSAPDLIVSDVMMPVMSGLQ 627

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   ++E  E  +IPVI +TA     ++      G   Y+ KP S    +  I+  + 
Sbjct: 628 MLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLR 685


>gi|312959863|ref|ZP_07774378.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
 gi|311285810|gb|EFQ64376.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
          Length = 633

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VEDN +N  +   ++ + G+      +G EA+  A       I+MD +L  I G 
Sbjct: 515 RHVLLVEDNPVNRTVVEAMLRSLGFEVSLATDGAEAIRSAESLIFTAILMDCRLPLIDGY 574

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+QI++     ++P+IA+TA A++GD E     G   Y++KP   +   + +++++
Sbjct: 575 EATRQIRQLPGCADLPIIALTANALQGDREACLAAGMNDYLAKPFKRTDLQQILQRWV 632


>gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 239

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED+     L    +  +GY      +G EAL    + +PD+I++D+ L +  G  
Sbjct: 9   TVLVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVMLPDTDGFA 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +T++++        PV+ +TA     D       G + Y++KP  +   +  ++  +  
Sbjct: 69  VTRELRARGVY--TPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRR 125


>gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 306

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D E    L    +   G+     R+G  AL       PD++++D+ L +I G  
Sbjct: 80  RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       +P + +TA     D+ R    G + Y++KP S+S  +  ++  +  A
Sbjct: 140 VCERLR--GAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRA 197


>gi|260752397|ref|YP_003225290.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551760|gb|ACV74706.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 241

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + +MIVED+     L   +++ +GYI     +G E  E  +    D+I+MD+ L   +G
Sbjct: 3   SQTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTVDLILMDVMLPGKNG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++T++++ +S+   IPVI ++A   + D     + G + YI KP      +  ++  + 
Sbjct: 63  LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122

Query: 122 EA 123
            +
Sbjct: 123 RS 124


>gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
          Length = 222

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED +   ++  + ++  G+I     +G++AL + + +  D++I+DI +  + G
Sbjct: 1   MANILIVEDEKKMQEIIVEYMQRGGHICFTADDGIDALVVLKSNPMDLMILDIMMPNLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K  +E S    +P+I +TA   + D+ +    G + Y++KP S  + +      + 
Sbjct: 61  FSVCKIAREMS---NLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 799

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED++   ++ ++ +++  Y+     +G   LELA   + D+I++D+ L ++ G++
Sbjct: 2   KLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGIQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +Q ++  +L   P++ VT       + +    G + Y+ KP ++   +  ++  +  
Sbjct: 62  FCQQRRKKGDL--TPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRR 118



 Score =  127 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 58/115 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+MIV+D+   +KL +  +E  G+      +     ++  +  PD++I+D+++ EISG
Sbjct: 497 TAKIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISG 556

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           +E+ + ++ D     +P++ ++            + G + YI KPI  S  +  I
Sbjct: 557 IELCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611



 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS--G 61
            ++IV+++ + ++   +  +  G I     +  +A E   + +PDVI++D+   +     
Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ K I++   +  IP +  +         ++ + G   ++ KP+     +ETI K +
Sbjct: 434 LELLKDIRQL--IPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPERIIETIVKVV 490


>gi|328880420|emb|CCA53659.1| putative two-component system sensory histidine kinase [Streptomyces
            venezuelae ATCC 10712]
          Length = 1337

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G   L   NG + +E    +    +++MD+ + E+ G
Sbjct: 1216 RTVLVVDDDARNLYALSGILELHGVTVLHAENGRKGIETLLANPAVSLVLMDVMMPEMDG 1275

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+E S+  ++PVIAVTA AM GD E+    G   Y++KP+     +  I +++
Sbjct: 1276 YTATARIRELSQYADLPVIAVTAKAMPGDREKSLASGASDYVTKPVDADELIACIGRWL 1334



 Score = 38.2 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 12/107 (11%)

Query: 2    LKKVMIVEDNE-----LNMKLFRDLIETSG-------YIALQTRNGMEALELARQHKPDV 49
             ++++++E+       +  +     +   G          +      EA           
Sbjct: 1054 TRRLLVIEERPRGLLAVVAENAVTQLSADGGHAERTDIELIAVVGPQEAAAALADQPFHC 1113

Query: 50   IIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            +++D+ + +   L     +  D  L+ +PV+A     +  DEE   +
Sbjct: 1114 VVLDLDMADGDALRFLAAMDGDEALRTVPVLAHNNRRLPADEEGALQ 1160


>gi|326798534|ref|YP_004316353.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
            sp. 21]
 gi|326549298|gb|ADZ77683.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
            sp. 21]
          Length = 1349

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 2/120 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEIS 60
            K V+I +D+  N+      +E      L   NG EAL+    H  K D+++MD+ + E+ 
Sbjct: 1228 KTVLIADDDIRNIFSLTKALERYKINVLAAENGKEALQTLHAHADKVDIVLMDMMMPEMD 1287

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E T +I+++S  + +P++AVTA AM GD E+    G   YISKPI +   +  ++ ++
Sbjct: 1288 GYETTTRIRQESRFKNLPILAVTAKAMMGDREKCIAAGASDYISKPIDIDQLISLLRVWL 1347



 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+    +   D    + Y  + T  G   +ELA ++ P  I++DI+L   +G ++ 
Sbjct: 963  LIIEDDTNFARALVDFSHKNDYKVVTTVRGDLGIELAEKYMPRAILLDIELPVKNGWQVM 1022

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS---IFMETIKKYI 120
            ++IK +   + IPV  +++      +      G   +I KP++L         ++K +
Sbjct: 1023 EEIKSNPTTRHIPVHIMSSH---EVKRESITKGAIDFIRKPMALEQIGQIFNRVEKAL 1077



 Score = 65.5 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 50/103 (48%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+EDN  + +     +E+       +++    +   + H+ D +I+D+ + +    
Sbjct: 1082 RKVLIIEDNLKHAQALAHYLESFDVKTDISKDIHSGVNRLKSHEADCVILDMGIPDAQAY 1141

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            +  + IK D+ ++ +PVI  T   +   EE   K   ++ + K
Sbjct: 1142 KTLETIKSDAGMENLPVIIFTGKQLSPSEEIKIKQYADSIVVK 1184


>gi|315607267|ref|ZP_07882267.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315250970|gb|EFU30959.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 1302

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVED+              GY  +   NG E LE  ++H   +I+ D  +  + G E
Sbjct: 1058 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERLKEHTVSLIVSDWMMPVMDGAE 1116

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++++ D     IP++ +TA      +    + G +AYI KP S+      I+  +
Sbjct: 1117 FCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNML 1173


>gi|312135502|ref|YP_004002840.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775553|gb|ADQ05040.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 234

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V +V+D +  + L  + +   GY      +G   L    + +PD++I+DI L +I G E
Sbjct: 5   TVYVVDDEKDILDLVSEYLTQKGYAVKTFGSGESFLGEFEKSEPDIVILDIMLPDIDGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+I+++S   ++P+I ++A   + D+    + G + YISKP SLS     I+K +  
Sbjct: 65  ICKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIRKILRR 120


>gi|308070736|ref|YP_003872341.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305860015|gb|ADM71803.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 1239

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK+++V+D+  N+     ++E+         NG EALEL  Q    D+++MD+ + E+ G
Sbjct: 1119 KKILLVDDDIRNVFALSSVLESYRMEVTFAENGREALELLEQTPDFDLVLMDMMMPEMDG 1178

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+   + +++P+IA+TA AMK D  +  + G   Y+ KPI     +  ++ ++
Sbjct: 1179 YEAMRRIRLMPQFEKMPIIALTAKAMKDDRSKCIEAGASDYVKKPIQTEQLLSLMRVWL 1237



 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 1    MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            M K++++VED++   K   +LI+           G EAL      + D +++D+ L +++
Sbjct: 971  MAKRLLVVEDDDNQRKSIIELIDHDDVAITAVSTGQEALNELAIQRYDCMVLDLMLSDMT 1030

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            G E+  +I+E+ +L ++P+I  T   +   EE   +   E+ I K + S    ++
Sbjct: 1031 GFELLDRIRENEQLADLPIIIYTGKDLDSKEETQLRKYAESIIIKDVKSPERLLD 1085



 Score = 95.2 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+     +  D+  + G+ AL    G + L +A+ + PD II+DIQL  + G  I 
Sbjct: 854 LIIEDDINFANILYDMARSRGFKALVALQGDDGLNMAQSYLPDAIILDIQLPVMDGWSIL 913

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
            ++K +S  + IPV  ++   +  D ++    G  AY+ KP S    
Sbjct: 914 GELKGNSSTRHIPVHVIS---VIDDVKQGLMMGAIAYLKKPSSKESL 957


>gi|297197388|ref|ZP_06914785.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297146701|gb|EFH28290.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 233

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++ ED+E+  +L R  +   G+ A    +G  AL+ AR+  PD++++D+ L  I 
Sbjct: 1   MCAHVLVAEDDEMQAELIRRSLLAEGHTATVVHDGRAALDAARRVAPDLVVLDLMLPVID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + ++ D    +IPV+ +TA + + D     + G + Y++KP S    M  I+  +
Sbjct: 61  GFGVCRVLRRD---ADIPVVMLTARSDEDDVLLGLELGADDYMTKPYSPRELMARIRTVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|224823780|ref|ZP_03696889.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224604235|gb|EEG10409.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 241

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+    ++ RD +E  G +     NG + L LA      ++++D+ +  I+G+E
Sbjct: 15  KVLLVDDDVELAEMLRDYLEREGCMVALAANGSDGLALALSGDYHLLVLDVMMPGINGIE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++ S L   PV+ +TA     D     + G + Y+ KP +    +  I+  +  
Sbjct: 75  VLRRLRQQSAL---PVLMLTAKGDDLDRVLGLELGADDYVPKPCTPRELLARIRAILRR 130


>gi|219854302|ref|YP_002471424.1| hypothetical protein CKR_0959 [Clostridium kluyveri NBRC 12016]
 gi|219568026|dbj|BAH06010.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 243

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+ +V+D     ++ +  +E SGY      NG++A+ L  +  PD+II+D+ L +I G 
Sbjct: 16  KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I + +++ S+   +P+I +T    + D       G + Y++KP S    +  +K  +  
Sbjct: 76  DICEMLRKRSK---VPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRR 132


>gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
 gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
          Length = 258

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     ++ +  +   GY  +   +G EAL++  +  PD++I+D+ + +  G 
Sbjct: 14  ATILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVMMPKRDGY 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+ +S     P+I +TA     D     + G + Y+ KP S       I+  +  
Sbjct: 74  YVCQEIRRES---STPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRR 130


>gi|220917497|ref|YP_002492801.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955351|gb|ACL65735.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 434

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D     ++   ++    Y      +G EAL+LAR   PD++++DI +  + G E+ 
Sbjct: 133 LVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEHPDLVLLDIGMPRLDGFEVL 191

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++++D    +IPVI V+       + R    G   Y+ KP S       +++ + 
Sbjct: 192 QRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLR 247


>gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 237

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +   +     ++  GY  +   NG +AL+ A     D I++D+ L +++G
Sbjct: 1   MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +++++    +  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  LEIARRVRQS---KTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
 gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
          Length = 1522

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
            +++IVEDN  N ++ R+L+E  G       +G EA+E+   H    D+++MD+Q+  + G
Sbjct: 1173 RLLIVEDNLNNQQIARELLEDEGAEVSIANHGKEAIEILEHHPSSFDLVLMDLQMPIMDG 1232

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
               TK I++   L+ +P+IA+TA AM  D +     G   +I KP  L+  +  I+KY
Sbjct: 1233 YNATKYIRKSLGLKNLPIIAMTANAMSSDRDACLAAGMNDHIGKPFDLNNLIHIIRKY 1290



 Score = 95.2 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
            +V++V+DN     L + + E+  ++     +G +AL+L RQ          + +D Q+  
Sbjct: 1025 RVLVVDDNPTACDLIQRMGESLKWVVDVATSGNDALQLMRQQHESGITYGALFIDWQMPG 1084

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115
            + G + +K ++E   +   P ++ +TA   +   +R  +     + Y+ KPI+ S+ +++
Sbjct: 1085 LDGWQTSKCVRELMPVDNGPMIVMITAHDREMLLQRSEEDQALLDGYLVKPITASMLLDS 1144

Query: 116  I 116
            +
Sbjct: 1145 V 1145


>gi|319786347|ref|YP_004145822.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464859|gb|ADV26591.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 238

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN    ++  + +E+ G+      +G++   LA ++  D +++D+ L  + G+E+
Sbjct: 11  VLVVEDNRNISEMIGEYLESRGFEVDYAADGLDGYRLAAENSYDAVVLDLMLPRLDGIEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 71  CRRLRSDAR-KSTPVLMLTARDTLDDKLTGLGHGADDYLTKPFAIQELEARLRALIRR 127


>gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
          Length = 229

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++ +D++  ++L    I   GY  ++  +G EAL         D++I+DI +  + G+
Sbjct: 2   KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+++++S+   IP+I +TA     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  EVVKELRKESQ---IPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118

Query: 123 A 123
           +
Sbjct: 119 S 119


>gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 246

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L    +   G+      +GM A+  ARQ +PD +++D+ L ++ G +
Sbjct: 21  RVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVMLPDLDGFQ 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E  +   +PV+ +TA     +       G + Y++KP SL   +  ++  +  +
Sbjct: 81  VLRRLRE--QFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS 138


>gi|253996017|ref|YP_003048081.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylotenera mobilis JLW8]
 gi|253982696|gb|ACT47554.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylotenera mobilis JLW8]
          Length = 332

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D   N+K+ + +++   Y     +NGM+ALEL +  +P +I++D+ + +++G E
Sbjct: 11  KVLIVDDEPFNLKVLKQILQDH-YRLSFAKNGMDALELVKTEQPQLILLDVMMPDMTGFE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  ++K D   Q IPVI VTA + + DE      G   YI+KP+  ++    +K ++
Sbjct: 70  VCAKLKADPNTQNIPVIFVTALSDENDEATGLTHGAVDYITKPVYPAVVKARVKTHL 126


>gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  DVI++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|156936560|ref|YP_001440474.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534814|gb|ABU79638.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 230

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+V+++ED+     +    +    Y      +G   LE A++ KPD++++D+ L  ++G
Sbjct: 3   TKRVLVIEDDADAASVLEAYLRRENYDVAIAGDGRSGLEKAQRWKPDLVLLDVMLPVMNG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++  S   ++PVI VTA     D     + G + Y+ KP      +  ++  + 
Sbjct: 63  TEVLATLRRSS---DVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 232

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  DVI++D+ + E+ G E
Sbjct: 11  RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGFE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 70  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 127


>gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 233

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    +L    +E +GY       G    E AR + PD++I+D+ L  + G
Sbjct: 1   MPNILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + ++ DS    +P++ +TA     D+    + G + Y++KP    + +  ++  + 
Sbjct: 61  LQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|330504532|ref|YP_004381401.1| two component transcription regulator protein [Pseudomonas
           mendocina NK-01]
 gi|328918818|gb|AEB59649.1| two component transcription regulator protein [Pseudomonas
           mendocina NK-01]
          Length = 240

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +   ++IV+D+    +L    +  +GY       G+E  +   +   D++++D+ L  
Sbjct: 1   MSRPDHILIVDDDPEIRQLLSTYLSDAGYQTCVASQGVEMRKRLEEQLIDLVVLDLMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL + ++++       IPVI +TA     D     + G + Y+ KP      +  IK 
Sbjct: 61  EDGLSLCRELR---VRSNIPVIMLTARGTLVDRIVGLEMGADDYLPKPFDPRELLARIKV 117

Query: 119 YIGE 122
            +  
Sbjct: 118 VLRR 121


>gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D+   ++L RD +E   +  L   +  +AL L +QH    I++D+ +   +G 
Sbjct: 5   RTILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPVHGIVLDVMMPGQNGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I+  S    +P++ ++A     D+ R    G + YI K  S    +  +K  +  
Sbjct: 65  ELCRTIRSSS---SVPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|291441377|ref|ZP_06580767.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291344272|gb|EFE71228.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1334

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60
            + +++V+D+  N+     ++E  G+  L   NG + ++    + PD  +++MD+ + E+ 
Sbjct: 1214 RTILVVDDDARNLFALSGILELHGFRVLHAENGRKGIDQLVNN-PDVALVLMDVMMPELD 1272

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G   T +I+      E+P+IAVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1273 GYAATAEIRSMPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1332



 Score = 39.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 46   KPDVIIMDIQLQEISGLEITK---QIKEDSELQEIPVIAVTAFAMKGDEERIRKG---G- 98
                +++++ + E    E+T+    ++ DS L  +PV+  +        E   +    G 
Sbjct: 1106 PCHCVVLELGMAEE---EVTRFLEALRGDSALASVPVLVHSGHRADAAVEEALRARTEGT 1162

Query: 99   CEAYISKPISLSIFMETIKKYI 120
               ++S   SL    E I  ++
Sbjct: 1163 ALEFLS---SLDELRERIALHL 1181


>gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
 gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
          Length = 230

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   G+   +  NG E L L      D+I++D+ + +++G
Sbjct: 1   MPHILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALLNDQ-IDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E     E PV+ +TA   + D     + G + Y+ KP S    M  I+  + 
Sbjct: 60  METLKRLRE---TWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
          Length = 253

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +   G+      +G  A+        D +++D+ L  I G E
Sbjct: 24  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVMLPGIDGFE 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++        PV+ +TA     D      GG + Y++KP +L      ++     
Sbjct: 84  VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|239787729|emb|CAX84244.1| Sensor protein [uncultured bacterium]
          Length = 817

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +D      L + ++E  G+      NG++A+E+  Q  P +I MD+++  ++G E
Sbjct: 598 RILVADDLPEARLLLKKMLEEVGFQVHDACNGLQAVEVFNQWHPHLIWMDMRMPLMNGFE 657

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK+IK   + +  PVIA+TA   + + +++ + GC+ Y++KP         + K++
Sbjct: 658 ATKRIKATPDGRHTPVIALTASVFEQERQQVLEAGCDDYLAKPFREQDLFALMAKHL 714


>gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 1514

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN       + L++   Y+     +G+ ALE  +Q +PD+++ DI +  ++GL
Sbjct: 648 ARILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQRPDLLLTDIMMPRLNGL 706

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +Q++     Q++P+I ++A A +       +   + Y+ KP S    +  ++  +
Sbjct: 707 ALLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACL 764


>gi|170077561|ref|YP_001734199.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002]
 gi|169885230|gb|ACA98943.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002]
          Length = 584

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 64/116 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED+++  KL R ++    Y  L+   G + ++LA  H+PD+I+ D+ +  I G
Sbjct: 1   MTTILVIEDDDIVRKLIRKILTQQQYAVLEAAGGHQGVQLALAHQPDLIVCDVMMPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             + ++++ ++    IP + +TA A K D  +  + G + Y++KP +    +  I 
Sbjct: 61  YGVLQKLQAEAATAMIPFVFLTARAEKQDIRQGMRLGADDYLTKPFTKEELLSAIA 116


>gi|120612957|ref|YP_972635.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120591421|gb|ABM34861.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 248

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      +    ++  G  A Q  +G+EAL L RQ KPD++++DI L  + GL++
Sbjct: 14  VLVVEDEPGIATILSAYLQRDGLRARQAHDGLEALRLFRQLKPDMVLLDIHLPGMDGLDL 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ED +    PVI VTA A   D+    + G + Y+ KP S    +  ++  +
Sbjct: 74  LRAIREDGQT---PVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVL 126


>gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED +   +     ++  GY      NG   LE A     D I++D+ L EI+G
Sbjct: 1   MSKILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+ +   +  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVCRRIRRE---KITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|297157290|gb|ADI07002.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 246

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED+   +      +   G+      +G  A++ A+  +PD++++D+ L    GL
Sbjct: 20  RRILVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAQAWQPDLLVLDVMLPGFDGL 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 80  EVCRRVQA---TRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136


>gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
 gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED  +   +    +    Y      +G EAL+     + DV+I+DI L ++ G E
Sbjct: 9   RILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIMLPKLDGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+      + PV+ +TA     D  +    G + Y+ KP      +  I+  + +
Sbjct: 69  VLKRIRNKGI--QTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRK 125


>gi|257453899|ref|ZP_05619176.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
           SK60]
 gi|257448671|gb|EEV23637.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
           SK60]
          Length = 245

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEI 59
            K V+++ED+    +L  + +  + Y         E LE         D++I+D+ L ++
Sbjct: 8   TKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDM 67

Query: 60  SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G+++ ++I++  DS L +  +I +TA     D     + G + Y+SKP      +  I+
Sbjct: 68  DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127

Query: 118 KYIGE 122
             +  
Sbjct: 128 AVMRR 132


>gi|237722776|ref|ZP_04553257.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229447298|gb|EEO53089.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1331

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+       D+++TS Y      NG +AL + R+  PD +I DI + E+SG 
Sbjct: 1066 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDFVISDIMMPEMSGD 1124

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   IK D E+  IPV+ +TA   + +     + G +AYI+KP S+ I   TIK  +  
Sbjct: 1125 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1184

Query: 122  EA 123
             A
Sbjct: 1185 RA 1186


>gi|255530499|ref|YP_003090871.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343483|gb|ACU02809.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
            2366]
          Length = 1161

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
            K ++I +D+  N+      ++      +   NG EA+    + +P D+++MDI + E+ G
Sbjct: 1042 KTILITDDDMRNIFALSSALQAYDLKIVIANNGREAISKLEETEPIDLVLMDIMMPEMDG 1101

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  + I+   E  ++P+IA+TA AMK D+E+  + G   YISKP+ +   +  ++ ++
Sbjct: 1102 YEAMRTIRSKKEFAKLPIIALTAKAMKNDKEKCIEAGANDYISKPVDMDKLLSMLRVWL 1160



 Score =  110 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IVED+ +   +  D     G+  +   +G  ALE+A    PD I++DI L  + G 
Sbjct: 767 QKLLIVEDDLVFADVLNDYAIEKGFKPILAHSGDVALEMAFSELPDAIVLDIMLPVMDGW 826

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            I K++K D   + IPV  ++A   K  +   +K G   ++ KPI      E 
Sbjct: 827 TILKKLKADPRTKHIPVHMMSAGNEKAGK--AKKEGAIGFLKKPIEKEQLDEA 877



 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 49/88 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+++ED EL+ KL    +   G    Q   G EAL L  +   D II+D++L +ISG +
Sbjct: 892 KVLLIEDQELHSKLLAQQLTEKGVDVKQAFTGKEALVLLDEQTFDCIILDLKLPDISGFD 951

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE 91
           +   IK   +L ++PVI  TA  +  D+
Sbjct: 952 LLDSIKSQEKLVQVPVIINTAMELDQDK 979


>gi|213962318|ref|ZP_03390581.1| two-component system sensor histidine kinase/response regulator
            hybrid [Capnocytophaga sputigena Capno]
 gi|213954984|gb|EEB66303.1| two-component system sensor histidine kinase/response regulator
            hybrid [Capnocytophaga sputigena Capno]
          Length = 1347

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+      + ++ +  +  L  R+G E LELA  H PD+I+ DI + +  G+ 
Sbjct: 1095 TILVVEDNDDMRDYIQHIL-SEHFHVLLARDGEEGLELAIAHIPDLIVSDIMMPKRDGIS 1153

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K+++ + +   IP+I +TA   +         G E YI+KP S  I  + I+  +
Sbjct: 1154 MVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENIL 1210


>gi|209522750|ref|ZP_03271308.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
 gi|209496799|gb|EDZ97096.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
          Length = 259

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 58/117 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+  N  +    +    Y      +G +AL +    KPD+I++D+ +  + G+E+
Sbjct: 4   ILIVDDDPDNFDVVETCLIDENYHLHYAYSGQDALSVINVIKPDLILLDVMMPVMDGIEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++IK   E +  P+I VTA +           G + +I+KP++    +  I+  + 
Sbjct: 64  CRRIKAMGEWKGTPIIMVTALSSTESLAECLGAGADDFIAKPVNGLELLARIRSMLR 120


>gi|189466428|ref|ZP_03015213.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM
            17393]
 gi|189434692|gb|EDV03677.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM
            17393]
          Length = 1396

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + V++VED+E         +    Y+     NG EAL     H PD+II D+ + E+ GL
Sbjct: 1135 RHVLVVEDDEEIRHYICRELGNDFYMTECC-NGKEALASILYHTPDLIISDVMMPEMDGL 1193

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + ++I+++  +  +P+I +TA   + D       G +AY+ KP S+ +  +T+   I  
Sbjct: 1194 TLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNIIRR 1253


>gi|168178399|ref|ZP_02613063.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
 gi|182670659|gb|EDT82633.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
 gi|322805312|emb|CBZ02876.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum H04402 065]
          Length = 236

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D++      +  +    Y  L+  NG +A+    +++  +I++D+ +  + G
Sbjct: 1   MYNILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNTLHENEIHLILLDVMMPIMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+       +P++ ++A +   D+      G + YI+KP +       +K  + 
Sbjct: 61  IEVAQKIR---TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|58337702|ref|YP_194287.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227904348|ref|ZP_04022153.1| two component response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58255019|gb|AAV43256.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227867996|gb|EEJ75417.1| two component response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 221

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED    +++    ++ +GY      NG++A+E A+++  DVII+DI +  + G+ 
Sbjct: 2   KILVAEDEPQLLRVLTVAMQKAGYEVDPVDNGLKAVEHAKKNCYDVIILDIMMPVMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             KQI+E  +  +  ++ +TA A   D       G + Y++KP SL   +  ++ 
Sbjct: 62  ALKQIRESGD--KTYILMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRS 114


>gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 240

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D    ++  R  +   GY      +G  AL+L   HKPD++I+D+ L ++ G
Sbjct: 1   MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++   ++       +P++ ++A   +  + +    G + Y++KP  +   +  ++  I 
Sbjct: 61  IDVIGGVR---GWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|295093801|emb|CBK82892.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D +  + +        GY       G  AL+   + KPD+I++D+ + +I 
Sbjct: 1   MSQSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEK-KPDIILLDVNMPDID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+   +    P+I +TA     D+ +    G + Y+ KP S+      I  ++
Sbjct: 60  GFTVCERIR---DYVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|317130175|ref|YP_004096457.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475123|gb|ADU31726.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +   KL +     S +   +  NG EA    +++  D+II+DI + EI 
Sbjct: 1   MEAKILLVDDEQEMRKLLKVCFSASPFQLDEASNGDEAFLKVQENNYDLIILDIMMPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+   ++ + +  EIPVI +TA           K G + Y+ KP      +  ++  +
Sbjct: 61  GFELLNMLRVELDT-EIPVILLTALGDTERVVEGLKRGADDYVVKPFEPKELVARVESVL 119

Query: 121 GEA 123
             +
Sbjct: 120 RRS 122


>gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D+     + ++ + T G+      +G+   +LA  ++ D+ ++D+ + +++G
Sbjct: 1   MHKILLIDDDIELTAMLKEFLCTEGFDVTTASDGVSGAQLALSNQFDLAVLDVMMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E    I++ S+   IPVI +TA   + D     + G + Y+ KP +       I+  + 
Sbjct: 61  IETLGLIRKSSQ---IPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
 gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
          Length = 225

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED E   +     +   GY   +  +G   L+ A     D++++D+ L  ++
Sbjct: 1   MAQKILIVEDEEKIARFVELELVHEGYEVEKAFDGRTGLDKALTGDFDLVVLDVMLPGLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+++S    +PVI +TA     D+      G + Y++KP ++   +  I+  +
Sbjct: 61  GLEVLRRIRKESV---VPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVAL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|152987665|ref|YP_001346520.1| two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150962823|gb|ABR84848.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 795

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 60/117 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VEDN +N  + R ++   GY      NG EALE   + +PD +++D Q+  + G  
Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALESLARERPDGVLLDCQMPVMDGFA 728

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + I+      E+PV+A+TA +  GD ER    G   Y++KP+        +  ++
Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785


>gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1]
 gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1]
          Length = 222

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++EDN    ++ +  +E +GY  +   +G+  L  AR++ PD++I+D+ L +  
Sbjct: 1   MEQRILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++      +P+I +TA      +  + + G + Y++KP      +  +K  +
Sbjct: 61  GAEVARRLRK---TSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|17228672|ref|NP_485220.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130524|dbj|BAB73134.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 440

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 66/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V+IV+DN  N+K+  D I + G+  L   +G  A+E A   +PD+I++D+ + E+ G 
Sbjct: 10  ATVLIVDDNPTNLKVLSDAISSLGWEILIATDGESAIEEAEYAQPDIILLDVMMPEMDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +   ++K  +  ++IPVI +TA   + D+      G   YI+KP +L   +  I+ ++
Sbjct: 70  QTCAELKSKTSTKDIPVIFLTALTDQFDKVLALVTGGVDYITKPFNLDEVLVRIQVHL 127


>gi|330890756|gb|EGH23417.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 647

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
           +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 523 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 582

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 583 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 642

Query: 122 E 122
           +
Sbjct: 643 K 643



 Score = 92.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 257 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 316

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++   ++  +E     G   Y  KP +     +   K 
Sbjct: 317 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 368



 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 377 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 436

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 437 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 467


>gi|325263737|ref|ZP_08130470.1| phosphate regulon transcriptional regulatory protein PhoB
           [Clostridium sp. D5]
 gi|324030775|gb|EGB92057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Clostridium sp. D5]
          Length = 298

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 67/119 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED+  +  L  D++E  GY  +   +G+EA+ LA + KPD+ I+DI L  ++G
Sbjct: 1   MSKILVVEDDVASQILMTDILEKYGYNVVVAMDGLEAISLAEKEKPDLAIVDIMLPTLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ ++++   + +E+PVI +TA        R  + G   ++SKP      +  IK  +
Sbjct: 61  YQVCERLRCLPQCKELPVIILTALNEDQHRIRALEAGAIDFLSKPFKRVELLTKIKAVL 119


>gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
          Length = 239

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+     L+R ++E +G+  +   NG +AL+       ++II D+ + E+ G
Sbjct: 18  MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDG 77

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  +   ++PV+ +TA A   D++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 78  YDLVGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 135

Query: 122 EA 123
            +
Sbjct: 136 RS 137


>gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 253

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IVED     ++  D +   GY  L   +G   LE  R  +PD++I+D+ L ++SG 
Sbjct: 17  ATILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAERPDLVILDVMLPQLSGF 76

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +  + + +    PV+ ++A     D     + G + Y+ KP  L  F+  ++  +  
Sbjct: 77  DLCRTRRTEGDA--TPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRR 134


>gi|254448684|ref|ZP_05062142.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
 gi|198261692|gb|EDY85979.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
          Length = 244

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED++       D +E  G+      +G  A+ LA ++  D I++DI L    G E+
Sbjct: 20  ILIVEDHQDLAANIGDYLEAGGFAPDFAADGPSAVNLAAENPYDAIVLDIMLPGFDGYEV 79

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++   L  +P+I +TA     D+    + G + Y+ KP  +      +K +I  
Sbjct: 80  CRRLRQQVGLS-VPIIMLTARDQLDDKILGFEQGADDYLIKPFEMKELEARLKAHIRR 136


>gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 1415

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +DN         L+  + Y      +G+ ALE  ++ +PD+++ D+ +  + GL 
Sbjct: 644 HILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDGLG 702

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++ D  + ++PVI ++A A +  +    + G + Y+SKP S    +  ++  +  A
Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTA 762



 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 10/121 (8%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISGL 62
            +++VEDN    +    L+   GY  +   +G +AL L   +  + D+++ D+ +  + G+
Sbjct: 1300 ILVVEDNAEVGEFSTQLLHDLGYQTVLASSGEQALALLGDNAKRFDLVLSDVAMPGMDGV 1359

Query: 63   EITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++IK+   L E+PV+  + +A M  DE+   +      + KP S+    + ++K + 
Sbjct: 1360 TLGREIKK--RLPELPVVLNSGYAHMLADEDHGFEL-----LHKPYSVEDLSKVLRKAMA 1412

Query: 122  E 122
            +
Sbjct: 1413 D 1413


>gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
 gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
          Length = 236

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V+IVEDN    +L R  +   G  A+    G   LE  R+   D++++D+ L  + 
Sbjct: 1   MTRNVLIVEDNPGIGELVRMHVADLGMNAVLCDRGDTGLERFREGDIDLVVLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++I+       +PV+ +TA + + D     + G + Y++KP S++     +K   
Sbjct: 61  GLSVCREIRSGPGY--VPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKALF 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|17228726|ref|NP_485274.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130578|dbj|BAB73188.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 387

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 67/116 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED+    +   DL+E  G+  L+  NG+  ++LA++  PD+II D+ + E+ G
Sbjct: 1   MNKILVIEDDIHVRQNILDLLEGEGFNILEAHNGLLGVQLAQEEIPDLIICDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E+ K +++  E   IP+I +TA + K D  +  + G + YI KP + +  +  I 
Sbjct: 61  YEVLKALRQCPETAIIPLIFLTAKSDKNDFRQGMEMGADDYIIKPFTRAELLAAIA 116


>gi|255007701|ref|ZP_05279827.1| putative two-component system sensor histidine kinase/response
            regulator fusion protein [Bacteroides fragilis 3_1_12]
          Length = 1362

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++I+EDN    +  R L     Y  L+  +G E +++A +  PD+II D+ +    G 
Sbjct: 1114 KTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKEIPDLIISDVMMPVKDGF 1172

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               ++I+E  E   IP++ +TA A   D  +  + G + Y+ KP +  +    ++  I
Sbjct: 1173 ACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLI 1230


>gi|187777750|ref|ZP_02994223.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
 gi|187774678|gb|EDU38480.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
          Length = 217

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++VED     +L    +E +GY  ++  +G  A+        D+I++DI L ++ G
Sbjct: 1   MKKVLVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIENTYFDIILLDIMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I  +IK     + IPVI VTA     D  +  K G + YI+KP      +  I+  + 
Sbjct: 61  FSIISKIK----GKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|168180761|ref|ZP_02615425.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182668592|gb|EDT80571.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+     + ++ +   GY   Q  +G+EA+E  +     ++IMDI +  + G+E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQSENYHMVIMDIMMPVMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+E S+   +P+I ++A     D+      G + YI KP S+   +  +K  I  A
Sbjct: 65  AMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121


>gi|158337180|ref|YP_001518355.1| response regulator [Acaryochloris marina MBIC11017]
 gi|158307421|gb|ABW29038.1| response regulator [Acaryochloris marina MBIC11017]
          Length = 121

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++KV++V+D+    +L  + +E  G   L   +G+EALE  +  +PD++++DI +   +G
Sbjct: 1   MQKVLVVDDSITQRQLMSNALEDMGLTVLIATDGVEALEQIQSTQPDIVVLDIVMPRKNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ ++IK +   Q +PV+  ++     D     K G +AY++KPI     +  +++ +
Sbjct: 61  YEVCREIKSNPTTQNVPVVICSSKTEDFDRYWGMKQGADAYLTKPIQPRELLVIVRQLL 119


>gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
 gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEI 59
           +KKV+++ED           ++ +GY A++   G EAL   R++ PD+   ++DI L ++
Sbjct: 1   MKKVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRN-PDIKVALLDIMLPDM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ ++I+      +I +I +TA   + D+      G + Y++KP S +     I   
Sbjct: 60  DGFEVCRRIRASD--SQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDAL 117

Query: 120 IGE 122
              
Sbjct: 118 YRR 120


>gi|119511391|ref|ZP_01630503.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463936|gb|EAW44861.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 295

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 61/115 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++I+ED+     L+   +E  G+  +   NG   +E A+ + PD+++ DI + ++ G 
Sbjct: 7   KTILIIEDDATTRNLYAKGLEAEGFKTIVAENGRIGIEKAQTYLPDLVVCDIVMPDMDGY 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + +++++D     IP I +T    + D  +  + G + Y++KP +L   ++ I 
Sbjct: 67  SVLQRMRQDPVTAIIPFIFLTGSDHQTDIRKGMELGADDYLTKPCTLEQLLKAIA 121


>gi|71907073|ref|YP_284660.1| PAS [Dechloromonas aromatica RCB]
 gi|71846694|gb|AAZ46190.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 794

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 67/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ ED  +N ++   L+E  G       +G+EAL+LA  +   +++MD+Q+  + GL
Sbjct: 662 RRILLAEDEPINREITLSLLEDVGLTVDIAEDGIEALKLAGANNYALVLMDMQMPGMDGL 721

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E T+ I+      ++ ++A+TA A   D++R    G   +ISKP+   +    + K++ +
Sbjct: 722 EATRSIRRLPVSGDVLILAMTANAFVEDKQRCLDAGMNDFISKPVDPKLLFNKLLKWLSQ 781


>gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila]
 gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           130b]
          Length = 226

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I++D+     L    +E  G+  +   +G   ++ A     D II+D+ L +++
Sbjct: 1   MSSSILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVMLPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K I+E  E    PV+ +TA     D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GFEVLKAIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|53718676|ref|YP_107662.1| putative two-component system, response regulator [Burkholderia
           pseudomallei K96243]
 gi|76812145|ref|YP_332663.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710b]
 gi|126441195|ref|YP_001058144.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126452418|ref|YP_001065379.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134281110|ref|ZP_01767819.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|167823237|ref|ZP_02454708.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 9]
 gi|167851424|ref|ZP_02476932.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           B7210]
 gi|167900223|ref|ZP_02487624.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           7894]
 gi|167916733|ref|ZP_02503824.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 112]
 gi|167918062|ref|ZP_02505153.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           BCC215]
 gi|217419788|ref|ZP_03451294.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226194482|ref|ZP_03790080.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237811364|ref|YP_002895815.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           MSHR346]
 gi|242317517|ref|ZP_04816533.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254181365|ref|ZP_04887962.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254190765|ref|ZP_04897272.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254196970|ref|ZP_04903394.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254260088|ref|ZP_04951142.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254298308|ref|ZP_04965760.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|52209090|emb|CAH35031.1| putative two-component system, response regulator [Burkholderia
           pseudomallei K96243]
 gi|76581598|gb|ABA51073.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710b]
 gi|126220688|gb|ABN84194.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126226060|gb|ABN89600.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134247416|gb|EBA47501.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|157808251|gb|EDO85421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157938440|gb|EDO94110.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653713|gb|EDS86406.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184211903|gb|EDU08946.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217397092|gb|EEC37108.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225933567|gb|EEH29556.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237503023|gb|ACQ95341.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           MSHR346]
 gi|242140756|gb|EES27158.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254218777|gb|EET08161.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 241

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +   +  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|331091201|ref|ZP_08340042.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404648|gb|EGG84187.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   K++IV+D +  + + +  +E  GY      N  E L+    + PD+I++DI +  
Sbjct: 1   MKEKYKILIVDDEQSILDMLKLQLEFEGYAVFTAGNAKETLDKV-SYGPDIILLDINMAG 59

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++GL++   I+   +    P+I +TA   + D+      G + YI+KP S++  +  I  
Sbjct: 60  MNGLDLCASIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISA 116

Query: 119 YIGE 122
           ++  
Sbjct: 117 HLRR 120


>gi|330817959|ref|YP_004361664.1| Putative two-component system, response regulator [Burkholderia
           gladioli BSR3]
 gi|327370352|gb|AEA61708.1| Putative two-component system, response regulator [Burkholderia
           gladioli BSR3]
          Length = 241

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +   +  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+      +G + L L ++ +PD+I++D+ L  I G E+ 
Sbjct: 8   LLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLFKEQRPDLIVLDVMLPGIDGFEVC 67

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 68  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRR 121


>gi|295086435|emb|CBK67958.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1339

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V+IVED+E              +  +++RNG EALE   +  PD++I DI + E+ GL 
Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1142

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++  L  IPVI +TA   + D       G +AYI KP ++ I  +T++  I
Sbjct: 1143 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199


>gi|294810650|ref|ZP_06769299.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|294442119|gb|EFG10937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1321

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+        L++   Y+     NG +AL +AR++ PD+I+ D+ + E+ G 
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   +K D E   IPV+ +TA   + D     + G +AYI+KP S+++    I+  +  
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|237719759|ref|ZP_04550240.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451028|gb|EEO56819.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1348

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V+IVED+E              +  +++RNG EALE   +  PD++I DI + E+ GL 
Sbjct: 1093 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1151

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++  L  IPVI +TA   + D       G +AYI KP ++ I  +T++  I
Sbjct: 1152 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1208


>gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 227

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED     +    L++  G+ A+   +G  AL    ++  D++++D+ L  +SG
Sbjct: 1   MATVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +++++   +  +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCRRLRQ---VSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|198276106|ref|ZP_03208637.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135]
 gi|198270918|gb|EDY95188.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135]
          Length = 1237

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            + VEDN+    + + ++    +   +  +G  AL      K D+I+ DI +  ++G E+ 
Sbjct: 986  LFVEDNDDLRNVMKRILTDH-FDLTEASSGETALLQLEDKKIDIIVSDIMMPGMNGFELC 1044

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K+IKE  E + IPVI +TA     D     + G + YI KP+++S+ +  I+  +
Sbjct: 1045 KKIKERFETKHIPVILLTAKTSDMDRITGYEVGADGYICKPLNISVLLAKIENLL 1099


>gi|254415056|ref|ZP_05028819.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178203|gb|EDX73204.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 2724

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 72/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K++IV+D   N  + R ++E  G+   +  NG E LE AR+ +PD+I++DI +  + G 
Sbjct: 2519 RKILIVDDRWENCAVLRSVLEPIGFEIQEAENGQEGLENAREWQPDLILVDIVMPVMDGH 2578

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++T+++++ SE    P+IA++A A   +     + GC  +I+KPI+    ++ ++ Y+
Sbjct: 2579 QMTQELRQISEFNTTPIIAISANAFATNRVESLEAGCTDFITKPIATEELLQKVQVYL 2636


>gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 225

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D      + +      G+   +  +GMEA+++ R+ + D+I+MD+ + E+ G
Sbjct: 1   MYKILIVDDEAGIRNIIKKYAVFEGHEVEEAADGMEAIQVCREKEFDIIVMDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+IK+     + PV+ ++A   + D+    + G + Y+ KP S    M  I   + 
Sbjct: 61  FSACKEIKK---FSKAPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVK 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|110833486|ref|YP_692345.1| two-component response regulatory protein [Alcanivorax borkumensis
           SK2]
 gi|110646597|emb|CAL16073.1| Probable two-component response regulatory protein [Alcanivorax
           borkumensis SK2]
          Length = 227

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED     +L  D +  + +   QT +   A+ +A +     II+D+ L +  G
Sbjct: 1   MSHILIVEDEPRLSQLVADYLHHAHFQTKQTDSAKAAMAMAHEQSFQAIILDLMLPDGDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K I++ S    +P+I VTA   + D     + G + YI KP S    +  +K  + 
Sbjct: 61  MEVCKTIRQHS---NVPIIMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 236

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 58/118 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+    KL    +  +GY +  +    +ALE   +   D++++D+ L  + G E+
Sbjct: 6   ILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVMLPGMDGFEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I++    +++P+I VTA   + D     + G + Y+ KP S       I+  +  
Sbjct: 66  CRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILKR 123


>gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 227

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED          L+   GY       G + L    ++  D++++D+ L  +SG
Sbjct: 1   MSRILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ + +++ S    +PVI +TA   + D+    + G + Y++KP S    +  +K  + 
Sbjct: 61  IDVCRALRQRS---SVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295707302|ref|YP_003600377.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294804961|gb|ADF42027.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +         ++  G      ++G+EA+E+  + K  +II+DI +    G+  
Sbjct: 6   VLVVDDEQEIRNGIAIYLKNEGIKVFTAKDGIEAIEILNKEKVHLIILDIMMPRQDGIST 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E    + IP+I ++A +   D+    + G + Y++KP +    +  +K  +  
Sbjct: 66  TFKIREQ---KNIPIIMLSAKSEDADKVLGLQVGADDYVTKPFNPLELIARVKSQLRR 120


>gi|294665326|ref|ZP_06730618.1| two-component system sensor protein [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292604919|gb|EFF48278.1| two-component system sensor protein [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1068

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ D+++MDI + E+ G+
Sbjct: 948  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 1007

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D ER  + G   YI+KPI +   +   + +   
Sbjct: 1008 TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1067



 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    +   +L     +  +   N  EAL LA + +P  I++DI L + SGL +
Sbjct: 682 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 741

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + +PV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 742 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 793



 Score = 73.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+       + L+       +   +  EA++       D ++ D+ L + SG 
Sbjct: 802 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDKLAGSTFDCMVTDLALPDGSGY 861

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 862 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 921

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 922 SVEASLPSDQQRLLREA 938


>gi|260769481|ref|ZP_05878414.1| signal transduction response regulator [Vibrio furnissii CIP
           102972]
 gi|260614819|gb|EEX40005.1| signal transduction response regulator [Vibrio furnissii CIP
           102972]
          Length = 305

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N++L   L++   Y  L   +G +AL + R+HKPD+I+MD+ + +++G +
Sbjct: 7   TVLVVDDQPTNIQLIYQLLKKE-YDVLMATSGQQALAVCREHKPDLILMDVLMPDMNGWD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K D ++  IPVI VTA   + DE      G   ++ KPI+ +     ++ ++
Sbjct: 66  TCQTLKRDPDIATIPVIFVTALTDQDDENACWDAGAVDFLQKPINANTLKHRVRAHL 122


>gi|238921931|ref|YP_002935445.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Eubacterium eligens ATCC 27750]
 gi|238873603|gb|ACR73311.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Eubacterium eligens ATCC 27750]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++VED+     L    ++T+ Y  L   NG  A+     H PD+I++D+ L +I
Sbjct: 1   MNKTQILVVEDDSPIRNLITTTLKTNNYRYLTAVNGESAISQTASHNPDIILLDLGLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E+ K+I+        P+I ++A     D+      G + Y++KP S+   +  ++  
Sbjct: 61  DGVEVIKKIR---TWTNTPIIVISARTEDADKIEALDAGADDYLTKPFSVDELLARLRVT 117

Query: 120 IGE 122
           +  
Sbjct: 118 VRR 120


>gi|229589354|ref|YP_002871473.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361220|emb|CAY48084.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 633

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 65/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VEDN +N  +   ++ + G+      +G EA+  A       I+MD +L  I G 
Sbjct: 515 RHVLLVEDNPVNRTVVEAMLRSLGFEVSLATDGAEAIRSAESLIFTAILMDCRLPLIDGY 574

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+QI++     ++P+IA+TA A++GD E     G   Y++KP   +   + +++++
Sbjct: 575 EATRQIRQLPGCADLPIIALTANALQGDREACLAAGMNDYLAKPFKRTDLQQILQRWV 632


>gi|39996387|ref|NP_952338.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983267|gb|AAR34661.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 772

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+ ++ K+   L+E+ G+      +G+EAL    +   D+++MD+Q+  + G E 
Sbjct: 548 VLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIGREAFDLVLMDVQMPVMDGFEA 607

Query: 65  TKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            + I+         +P+IA+TA A+ GD E   + G + Y++KP++ S     I ++
Sbjct: 608 MRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRVISRH 664


>gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D    ++     +   GY  +   +G EALELA  H PDV+I+D+ L ++ G
Sbjct: 1   MSRVLVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHPPDVVILDLGLPDLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++   ++       +P++ ++  +   D+      G + Y++KP  +   M  ++  + 
Sbjct: 61  VDVIAGLR---GWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|329934222|ref|ZP_08284301.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305818|gb|EGG49673.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 255

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+ +  +     +E  GY      +G+  LEL R+ + D++++D+ L  + G+ 
Sbjct: 8   TILLVEDDTVIRRSVTMALERYGYRVTAAADGLTGLELFREGRHDLLLLDVMLPGLDGIG 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E S     PV+ ++A     D     + G + Y+ KP+  ++ +  I+  +  A
Sbjct: 68  LCRRIRETSMD---PVLMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRA 124


>gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     ++  G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 226

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G + L+   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLR---VRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I +DNE   +     ++  G I +   +G EALE  ++   D++I+D+ + +I G
Sbjct: 1   MKKILICDDNEAVHETIGTYLKNDGMIYISAFDGEEALEKFKKENVDLVILDLMMPKIFG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++ SE   +P+I +TA   + D+    + G + YI KP S    +  IK    
Sbjct: 61  TEVCKEIRKISE---VPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332526423|ref|ZP_08402544.1| response regulator receiver protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332110554|gb|EGJ10877.1| response regulator receiver protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 130

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++ +ED     +L R  +E  GY  ++  +G E L LAR+  PD+I++D+ +  + 
Sbjct: 1   MAYTILSIEDQPDIRRLIRMTLEFKGYEVVEAGDGEEGLALARRSPPDLILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +Q+  D    E+PV+ ++A     + E     G + Y+ KP S    ++   + +
Sbjct: 61  GHEVARQLHADPRTNEVPVVMISALGQTSEIEAGLLSGAQHYLVKPFSPWALLDITAQLV 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    ++     +   G+     ++G+ A+ L +Q +P V+I+D+ +  + G E
Sbjct: 11  KILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLMKQFQPHVVILDVMMPGMDGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +K+      + VI +TA     D  +    G + Y+ KP S    +  I   I 
Sbjct: 71  VCRMLKKMD---NVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIR 125


>gi|294807181|ref|ZP_06765997.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294445632|gb|EFG14283.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 965

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN       +  +       +   +G+EAL+L + H PD+II D+ +  ++G E+
Sbjct: 709 VLVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTKSHAPDIIISDVMMPRMNGYEL 768

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122
            K IKED  +  IP++ +TA   K  +    K G +AY++KP  + + ME I+  +   E
Sbjct: 769 CKNIKEDITISHIPIVLLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 828

Query: 123 A 123
           +
Sbjct: 829 S 829


>gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 226

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+ A+   NG EAL    +   DV+++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S    +P+I +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRSRS---SVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 254

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +MIVED     +  +  +E  G+      NG  A E   Q + D++++DI L ++ GLE+
Sbjct: 31  IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIMLPDMDGLEV 90

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++++E   + ++P+I +TA     D+      G + YI+KP ++   +  ++  I 
Sbjct: 91  CRRVRE---ISDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIR 144


>gi|188590123|ref|YP_001920314.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251780101|ref|ZP_04823021.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188500404|gb|ACD53540.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243084416|gb|EES50306.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++VED++    L    +ET  Y      NG  A+  A  + PD++I+D+ L ++
Sbjct: 1   MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+EI K+I+       IP+I V+A +   D+      G + Y++KP S+   +  ++  
Sbjct: 61  DGIEIIKKIR---TWSNIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVS 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|160885437|ref|ZP_02066440.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483]
 gi|156109059|gb|EDO10804.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483]
          Length = 1339

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V+IVED+E              +  +++RNG EALE   +  PD++I DI + E+ GL 
Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKAPDLVISDIMMPEMDGLT 1142

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++  L  IPVI +TA   + D       G +AYI KP ++ I  +T++  I
Sbjct: 1143 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199


>gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 245

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D      L    ++   +   +  +  +AL    + K D+ I+D+ L E  
Sbjct: 15  MSENILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKLDLAILDVMLPETD 74

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E       PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 75  GFQICRKIREKYNY---PVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQL 131

Query: 121 GE 122
             
Sbjct: 132 RR 133


>gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +    ++   GY      NG   L+LA  +  D++I+D  L   SGL+
Sbjct: 2   RILLVDDQVELTQPLSLVLSREGYQVDVADNGRTGLQLALDNGYDLLILDWMLPYQSGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++ + +    PV+ +TA     D       G + Y+ KP  L   +  ++  +  +
Sbjct: 62  ICQKLRTEGKT--TPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRRS 119


>gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D+E   ++    +++ G+      NG EA  L   + PD++++D+ + ++ G++
Sbjct: 7   KVLIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMIPQVDGID 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I++  E    PVI +TA     D+    + G + YI KP      +  +K  +  
Sbjct: 67  VLKWIRKQGER---PVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122


>gi|153003413|ref|YP_001377738.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152026986|gb|ABS24754.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 1816

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
             KK++IV+D+  N+     L+E  G   +   NG   LE+ + +   D+++MD+ + E+ 
Sbjct: 1685 SKKILIVDDDVRNVFAITALLEQHGASVVYAENGRRGLEVLKANPGVDLVLMDVMMPELD 1744

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E  + I+   E + +P+IA+TA AMKGD E+  + G   Y++KP+     +  ++ ++
Sbjct: 1745 GYETMRAIRHLPEFERLPIIALTAKAMKGDREKCVESGASDYVTKPVKAEQILSLLRVWL 1804

Query: 121  -GE 122
               
Sbjct: 1805 YRR 1807



 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V  +         +    G+   Q  +  +A+  AR+ +PD I++++         +
Sbjct: 1545 ILVVVPDARLAATVEAVARDRGFAVWQA-DASDAVRTARERRPDGIVIEVGAAAGPEWSV 1603

Query: 65   TKQIKEDSELQEIPVIAV 82
             +++KED + +EIP+  +
Sbjct: 1604 LERLKEDHDTREIPLHVL 1621


>gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED+E    L  + ++   Y  +Q  NG +A+         ++I+D+ L  I G+E
Sbjct: 5   RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E S    +P+I ++A   + D       G + YI KP S+      +K  +  
Sbjct: 65  VLRKIRESS---TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRR 120


>gi|119489834|ref|ZP_01622589.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454262|gb|EAW35413.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 506

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++D   N++L   L+ + GY      +G  AL+  ++  PD+I++D+ + EISG E+
Sbjct: 14  ILIIDDTPENLQLMVQLLTSVGYQVRAYISGNIALQGIKKTPPDLILLDVMMPEISGYEV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK-----KY 119
            +++K D E Q+IPVI ++A     D+ +  + G   YI+KP  +   +  ++     + 
Sbjct: 74  CQKLKSDPETQDIPVIFISAMNTAIDKVKAFQVGGVDYITKPFHVEEVLARVQIQLENRC 133

Query: 120 IGEA 123
           + ++
Sbjct: 134 LRQS 137


>gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
 gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
 gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS
            [Shewanella putrefaciens 200]
          Length = 1234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 72/116 (62%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL++      D ++MDIQ+  + GL  
Sbjct: 1112 VLLVEDNFINQQVATELLKSAGYEVVLADNGQVALDIIDSRPFDAVLMDIQMPVMDGLTA 1171

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E    +E+P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1172 ARALRERYSPEELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1227



 Score = 97.1 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  ++    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 968  RTLVVDDNPTALQIYSAVMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGSD 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  L + P +I +TA++ +  +  +      A + KP   S   + I
Sbjct: 1028 VISAIDTMVAEGRLDKRPVIIMMTAYSAEPLQYEVESANVFAVLQKPFKASSLFDEI 1084


>gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 231

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQE 58
           M   +++VED E         ++   Y  L  ++G+EAL++   ++   D+II+D  L +
Sbjct: 1   MTNTILLVEDEEALSSYLIPELKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ ++I+++    +IPVI +TA    GD+      G + YI+KP  +   +  I+ 
Sbjct: 61  LDGLEVLRRIRKND---DIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRV 117

Query: 119 YIG 121
            + 
Sbjct: 118 VLR 120


>gi|330827912|ref|YP_004390864.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803048|gb|AEB48247.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L +  +E  G      R+G E   L  + + D++++D+ +    GL 
Sbjct: 7   HILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGEDGLT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++       +P+I +TA   + D     + G + Y++KP +    +  IK  +  
Sbjct: 67  LCRELR---VKSNLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRR 122


>gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L    +   G+  ++  +G EAL +      D++++DI +  + G
Sbjct: 1   MPTILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPMMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K+++      ++P++ +TA     ++ +  + G + Y++KP         +K  + 
Sbjct: 61  WTLCKELRR--ANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 248

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D+ +   +    +   GY  L+  +G +A+E   + KP ++++DI++  + GL 
Sbjct: 16  RILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDIEMPRVGGLA 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E   L   PV+ V++ +   D       G + Y++KP +    +  I+  +  
Sbjct: 76  VLSRLRESGNL--TPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRR 132


>gi|167561993|ref|ZP_02354909.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis
           EO147]
 gi|167569245|ref|ZP_02362119.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis
           C6786]
          Length = 241

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +   +  +
Sbjct: 61  GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1]
 gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E P++ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQRIR--DEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 243

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    ++L    ++  GY      NG +AL L  + +PD+I++D+ L++++GL+
Sbjct: 5   KILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVDEVRPDLIVLDVLLKQLNGLD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +QI+E +    +PV+ V+A +   D       G + Y++KP S    +  +K ++  
Sbjct: 65  VCQQIREITA---VPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLRR 120


>gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+     L R ++   GY      +G +AL+   +  PD+I++D+ L  ++
Sbjct: 1   MKAHLLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVMLPGLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++       +P++ +TA     D  +  + G + Y+ KP +    +  IK  +
Sbjct: 61  GLEVVQRLR--VAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 241

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 58/118 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED++   +L R  +   GY  L       A  L R+  PD+ ++D  L   SGL +
Sbjct: 11  VLVVEDDKGIQELLRFTLVCGGYQPLCVDTAEAAEALLRETLPDLALIDWMLPGKSGLAL 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +++ D+  + +P+I +TA   + D     +GG + YI KP S    +  +   +  
Sbjct: 71  TGRLRSDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRR 128


>gi|255035713|ref|YP_003086334.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948469|gb|ACT93169.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1278

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++I+EDN+      R+L E + Y  L+  NG+  +ELA++  PD+I+ D+ + EISGLE
Sbjct: 1028 TILIIEDNDQLRVFIRELFEET-YNILEAGNGLRGVELAQEKIPDIILSDVMMPEISGLE 1086

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  ++K+      IPV+ +TA             G + Y+ KP    I    I   + 
Sbjct: 1087 VCNRLKKSDTTSHIPVVLLTARTQSEQVIEGLTAGADDYLVKPFDPRILEIKINNLLR 1144


>gi|298530355|ref|ZP_07017757.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509729|gb|EFI33633.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 361

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +MI++D   N+KL +++++  GY  +    G  AL+ A +  PD+I++DI++  + G 
Sbjct: 8   KNIMIIDDTPANLKLLQEMLQGRGYRVMAFPQGEMALKAAARKPPDLILLDIRMPGLDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  + KE   L++IPVI ++A     D+ +    G   Y++KP         +  +I 
Sbjct: 68  QVCTRFKEQEGLKDIPVIFISALNDPSDKVQAFAAGGVDYVTKPFHPEEVHARVATHIR 126


>gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016]
 gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED+E    L  + ++   Y  +Q  NG +A+         ++I+D+ L  I G+E
Sbjct: 10  RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E S    +P+I ++A   + D       G + YI KP S+      +K  +  
Sbjct: 70  VLRKIRESS---TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRR 125


>gi|222110176|ref|YP_002552440.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax ebreus TPSY]
 gi|221729620|gb|ACM32440.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax ebreus TPSY]
          Length = 377

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
             V++V+D   N+ L   L++   Y      +G +AL +A+    PD++++DI +  I G
Sbjct: 20  ATVLVVDDTPDNLTLMAGLLQGH-YRVKVAASGEKALVIAQSDAPPDLLLLDIMMPGIDG 78

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++K +   + IPVI +TA +   DE      G   YI+KPIS SI +  +  ++
Sbjct: 79  YEVCRRLKANEATRHIPVIFLTARSDPDDEREGLALGAVDYITKPISPSILLARVATHL 137


>gi|209524733|ref|ZP_03273280.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima
           CS-328]
 gi|209494877|gb|EDZ95185.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima
           CS-328]
          Length = 1206

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 65/116 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN    +    +++ +G+ A+  +NG +    A+ + PDVI+ D+ + ++SGLE
Sbjct: 846 TVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQTYHPDVIVTDLMMPQVSGLE 905

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + + I+   EL+  P+I +TA A +       + G +AY+SKP +    +  ++  
Sbjct: 906 LIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL 961



 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            +++V+D   N+ L         +  L+  +G  AL++  +  +  VII D ++  +SG 
Sbjct: 11  TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKK 118
           E    +        I +I +T +    D       G    Y++KP         +++
Sbjct: 70  EFLS-LTATQYPDSIRII-LTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQ 124


>gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
 gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 6/124 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVII--MDIQLQE 58
           M  K+++ ED E   +L    +   G+  ++  +G +A+E    ++ DV++  +D+ + +
Sbjct: 1   MDNKILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNE-DVVLVMLDVMMPK 59

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G +  ++I+  S    +P++ +TA   + DE      G + YI+KP S +I +  +K 
Sbjct: 60  KDGYDACREIRGKS---NVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKN 116

Query: 119 YIGE 122
            +  
Sbjct: 117 LLRR 120


>gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein sphR
 gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942]
 gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 257

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 57/129 (44%), Gaps = 11/129 (8%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---------HKPDVIIMDI 54
           ++++VED  +   +   +++  G+      +G  AL   R            PD++++D+
Sbjct: 25  RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            L  ++GL+  + ++       +P++ ++A   + D     + G + Y++KP      + 
Sbjct: 85  MLPAVNGLDFCRLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVA 142

Query: 115 TIKKYIGEA 123
             +  +  +
Sbjct: 143 RCRALLRRS 151


>gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 244

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED     +     +   G+      +G  A++     +PD++++DI L    GL
Sbjct: 18  RRVLVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHTWQPDLVVLDIMLPGFDGL 77

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 78  EVCRRIQAQ---RPVPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLRR 134


>gi|289549074|ref|YP_003474062.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289182691|gb|ADC89935.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 223

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 61/123 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV +VED+   ++     +E  G+ A   R+G   +   R   P ++++D+ L +  
Sbjct: 1   MRPKVFVVEDDIDLLETVVHYLEEEGFQAEGFRDGSSFIRRIRDDVPHLVLLDVMLPDHD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + +K +   + +P++ +T   M+ D  +  + G + YI+KP SL   +  I+  +
Sbjct: 61  GFSLARYLKTNPATKSVPIVFITVKGMEDDRLKGFELGADDYITKPFSLRELLARIRAVL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|229513635|ref|ZP_04403099.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
 gi|229521780|ref|ZP_04411198.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229341374|gb|EEO06378.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229349512|gb|EEO14468.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
          Length = 263

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 29  KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 88

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 89  ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 145


>gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G +AL    +  PD++++D+ L  +SG
Sbjct: 1   MTHVLIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEICKALRTRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08]
 gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07]
 gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08]
 gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++ +DN    ++   L+   GY  +   NG EA+ LA     D+II+D+ +   +G 
Sbjct: 7   KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLADS-TIDLIILDVVMPVKTGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +I+E +     P++ +TA     D+      G + Y+SKP S S  +  +K  +  
Sbjct: 66  VACSEIREKTTA---PILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRR 122


>gi|218245687|ref|YP_002371058.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|257058734|ref|YP_003136622.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
 gi|218166165|gb|ACK64902.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|256588900|gb|ACU99786.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
          Length = 593

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   ++   GY      +G  A+  A+   PD+I++DI++ E+ G  +
Sbjct: 13  ILIVDDKPTNLRILSTMLTKQGYKVRAVVSGKMAITAAQNQPPDLILLDIKMPELDGYRV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++ + + + IPVI ++A    GD+ +  + G   YI+KP      +  +  ++
Sbjct: 73  CELLQAEEKTRHIPVIFLSALQDGGDKMKAFQAGGVDYITKPFQFEEVLARVSTHL 128


>gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 216

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 61/120 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++++D+   + L +D +E  GY      NG EALE+     PD+II D+ + E+ G  
Sbjct: 11  RLLLIDDDPNLILLVKDYLEFQGYEVTTAENGREALEILANQVPDMIICDVMMPEMDGYA 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +++++D  L  IPV+ ++A     D  +    G + Y+ KP         ++  + +A
Sbjct: 71  FVEKVRQDRRLSWIPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELAAQVESSLSQA 130


>gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED E   +  +  +   GY     ++GM  L  AR+  PD+II+D  L  +S
Sbjct: 6   MSTQILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWMLPRLS 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI ++++  +    +P+I +TA     D       G   YI KP SL  F+  ++ +I
Sbjct: 66  GIEICRRLR--TSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHI 123

Query: 121 G 121
            
Sbjct: 124 R 124


>gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291]
          Length = 233

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D +    L    ++  G+   +   G EALE       D+ I+DI L +I 
Sbjct: 1   MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKDLDMAILDIMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E       P+I +TA     D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFHICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|299145134|ref|ZP_07038202.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298515625|gb|EFI39506.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1314

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++V+DN       +   E  GY    +   +G+EAL+L R H PD+I+ D+ +  ++G
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E+ K IKED  +  IPVI +TA   K       K G + Y+SKP  + + ME I+  +
Sbjct: 1116 YELCKTIKEDIAISHIPVILLTAKDDKQSLISGYKNGADGYLSKPFEVEMLMELIRNRL 1174


>gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1521

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED   N  + + L+   G+ A    +G EA+E+      D I+MDIQ+  + G+E 
Sbjct: 1402 ILVVEDERTNRAVAQRLLGKLGHEAACAESGEEAIEILATAAFDCILMDIQMPGLDGVET 1461

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            T+ I+ D+   +IP+IA+TA AM+GD +R    G + Y++KP  L    + +++ + E+
Sbjct: 1462 TRAIR-DTLGLDIPIIALTAHAMEGDRKRFLDAGMQGYVAKPFDLPELQDELERVLLES 1519


>gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
 gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+M+V+D+     L R  +   GY      +      +  + + D+I++D+ L    GL
Sbjct: 7   KKLMVVDDDARIRDLLRRYLSQEGYEVFVAEDSKAMSRIMVKERFDLIVLDLMLPGEDGL 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I K+++   +  + P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 67  SICKRLRASKD--QTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRR 124


>gi|160888170|ref|ZP_02069173.1| hypothetical protein BACUNI_00578 [Bacteroides uniformis ATCC 8492]
 gi|270297069|ref|ZP_06203268.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478932|ref|ZP_07938079.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|156862305|gb|EDO55736.1| hypothetical protein BACUNI_00578 [Bacteroides uniformis ATCC 8492]
 gi|270273056|gb|EFA18919.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904909|gb|EFV26716.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 375

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 60/113 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +      NG +ALE   +  PD++++D+ + ++SG E
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVEKENPDLVLLDVMMPDMSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + + +K +    +IP+I +TA     D  +  + G   +ISKP +    +  +
Sbjct: 71  VAQHLKSNPNTADIPIIFLTALNSTADIVKGFQVGANDFISKPFNKEELIIRV 123


>gi|2575807|dbj|BAA22997.1| adenylate cyclase [Arthrospira platensis]
 gi|291568632|dbj|BAI90904.1| adenylate cyclase [Arthrospira platensis NIES-39]
          Length = 1202

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 65/116 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN    +    +++ +G+ A+  +NG +    A+ + PDVI+ D+ + ++SGLE
Sbjct: 846 TVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQTYHPDVIVTDLMMPQVSGLE 905

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + + I+   EL+  P+I +TA A +       + G +AY+SKP +    +  ++  
Sbjct: 906 LIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL 961



 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            +++V+D   N+ L         +  L+  +G  AL++  +  +  VII D ++  +SG 
Sbjct: 11  TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKK 118
           E    +        I +I +T +    D       G    Y++KP         +++
Sbjct: 70  EFLS-LTATQYPDSIRII-LTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQ 124


>gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1]
 gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I EDN        +++   GY  +   NG++AL L RQ +PD II+DI + E+   +
Sbjct: 2   KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDSYK 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++     + P+I ++A   + D     + G + YISKP  +      IK  +  
Sbjct: 62  VCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRR 118


>gi|332530116|ref|ZP_08406066.1| multi-sensor signal transduction histidine kinase [Hylemonella
           gracilis ATCC 19624]
 gi|332040589|gb|EGI76965.1| multi-sensor signal transduction histidine kinase [Hylemonella
           gracilis ATCC 19624]
          Length = 487

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++++D+     L   L+E  GY      NG + ++ A +  PD+I++D+ L  + G 
Sbjct: 10  ARILVIDDSPEIRLLATVLLEREGYEVSSADNGEDGVKRATETAPDLILLDVMLPGMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-- 120
           E+ + +K+   L++IPVI ++A      + +    G   Y++KP+S+ + +  ++ ++  
Sbjct: 70  EVCRWLKQSEALRDIPVIFMSAQDDVPAQTQGFTAGGADYVTKPLSVPVLLARVRTHVAL 129

Query: 121 ---GEA 123
                +
Sbjct: 130 HAQRRS 135


>gi|319952421|ref|YP_004163688.1| histidine kinase [Cellulophaga algicola DSM 14237]
 gi|319421081|gb|ADV48190.1| histidine kinase [Cellulophaga algicola DSM 14237]
          Length = 1388

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN       RD  +   Y  L  ++G E L++A++  PDVI+ D+ + E+ G  
Sbjct: 1140 TLLVVEDNAELRNYLRDEFKQQ-YKVLVAKDGQEGLQMAKEFLPDVILTDVIMPEMDGFT 1198

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              K IKED     IP++ +TA A   D       G +AY+ KP  + +    +K+ I
Sbjct: 1199 FCKNIKEDLRTSHIPLLMLTAKAKIDDRIEGIGLGADAYMVKPFDMRLLSLRLKQLI 1255


>gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D      + +  ++ +GY      +G +AL    Q++ D+II DI +  + 
Sbjct: 1   MTYKILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKFNQYQYDLIISDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++         P + +TA   + D+      G + +ISKP S    +  +K  +
Sbjct: 61  GYDFIGEV--LLAKPNQPFLFITAKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNIL 118

Query: 121 GE 122
             
Sbjct: 119 NR 120


>gi|301161893|emb|CBW21437.1| putative two-component system sensor histidine kinase/response
            regulator fusion protein [Bacteroides fragilis 638R]
          Length = 1361

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVEDN    +  R L  T  Y  L+  +G E + +A    PD+II D+ +    G 
Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1171

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               ++I+E  E   IP++ +TA A   D  +    G + Y+ KP +  +    ++  I
Sbjct: 1172 ACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229


>gi|253563785|ref|ZP_04841242.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
 gi|251947561|gb|EES87843.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
          Length = 1361

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVEDN    +  R L  T  Y  L+  +G E + +A    PD+II D+ +    G 
Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1171

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               ++I+E  E   IP++ +TA A   D  +    G + Y+ KP +  +    ++  I
Sbjct: 1172 ACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229


>gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY     ++G  AL+   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++       IP++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRAGGHT--IPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++   K   + ++   YI     +G    +        +I++D+ L ++ G+ 
Sbjct: 2   RILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVMLPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++   ++   PV+ +TA     D+      G + Y+ KP  L      I+  +  
Sbjct: 62  FCQRLRRSGKM--TPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRR 118


>gi|188584893|ref|YP_001916438.1| response regulator receiver protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349580|gb|ACB83850.1| response regulator receiver protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 126

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 74/121 (61%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED +  +   +  ++  G+  L   NG++ + LA++ KPDVI++DI L +++G
Sbjct: 1   MPKILVIEDEKNIVIPLKLYLQKQGFEVLVATNGVDGVSLAQEEKPDVILLDIILPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + +KE+ E + IP+I +TA + + + E+    G + Y+ KP + +   E IKKY+ 
Sbjct: 61  YLVCEALKENEETKHIPIIFITAKSNETEIEKALAMGGDDYLIKPFTHTKLYEVIKKYLK 120

Query: 122 E 122
           E
Sbjct: 121 E 121


>gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    + + GY   +  N  + LE+  + +  ++++DI +  ++GLE+
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKVFKAENAAKGLEIISKEEVHLVLLDIMMPGMNGLEM 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+E++    IP+I ++A +   D+      G + Y+ KP +       +K  +  
Sbjct: 66  CKKIRENN---NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120


>gi|146340880|ref|YP_001205928.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146193686|emb|CAL77703.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Bradyrhizobium sp. ORS278]
          Length = 2117

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K V++V+D+  N+     ++E  G   L    G EA++L + +    +++MDI + ++ G
Sbjct: 1997 KTVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDLVQGNPEIAIVLMDIMMPQMDG 2056

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +    I++      +P+IA+TA AMKGD E+  + G   Y++KP++    +  I+ ++ 
Sbjct: 2057 YQTIGVIRQSPIFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIRMWLH 2116

Query: 122  E 122
             
Sbjct: 2117 R 2117



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED+    ++  DL    G+  L    G EALELA+Q++P  I +D+ L ++ G  + 
Sbjct: 1732 LVVEDDPHYARVLIDLARDKGFKVLIASRGAEALELAKQYQPAAISLDVFLPDMLGWTVL 1791

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP 106
             Q+K +   + IPV  +T   +  D +     G  +++SKP
Sbjct: 1792 SQLKHNPLTRHIPVQIIT---LDEDRQHALARGAFSFVSKP 1829



 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++IVEDN+      R L+E      +    G  AL+  R    D +++D++L ++SG 
Sbjct: 1851 KRLLIVEDNDAERMSIRQLLEHDDIEIVGADTGAAALDTLRSGPCDCVVLDLRLPDMSGF 1910

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            ++ +Q++ D  L  +PV+  T   +  +E+        + + K + S    ++
Sbjct: 1911 DVLEQLRTDETLAGVPVVVFTGRELSAEEDAELHTMARSIVVKGVESPERLLD 1963


>gi|60680360|ref|YP_210504.1| putative two-component system sensor histidine kinase/response
            regulator fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60491794|emb|CAH06552.1| putative two-component system sensor histidine kinase/response
            regulator fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1361

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVEDN    +  R L  T  Y  L+  +G E + +A    PD+II D+ +    G 
Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1171

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               ++I+E  E   IP++ +TA A   D  +    G + Y+ KP +  +    ++  I
Sbjct: 1172 ACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229


>gi|53712177|ref|YP_098169.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
 gi|52215042|dbj|BAD47635.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
          Length = 1328

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVEDN    +  R L  T  Y  L+  +G E + +A    PD+II D+ +    G 
Sbjct: 1080 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1138

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               ++I+E  E   IP++ +TA A   D  +    G + Y+ KP +  +    ++  I
Sbjct: 1139 ACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1196


>gi|312879123|ref|ZP_07738923.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
 gi|310782414|gb|EFQ22812.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
          Length = 476

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D     ++   L+    Y      +G++ALE AR   PD++++D+ +  + G ++
Sbjct: 9   VLIVDDEPSWREVLEVLLLPEEYSLRFASSGIQALEEARGRCPDLVLLDVMMPGMDGFQV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++E  E  E+PV+ +TA   +       + G + ++SKP         I+  +
Sbjct: 69  CRALREQRETGEVPVVMITALEDRQSRIAGVEAGADDFVSKPFDRMELRARIRTIL 124


>gi|284052602|ref|ZP_06382812.1| response regulator receiver modulated serine phosphatase
           [Arthrospira platensis str. Paraca]
          Length = 374

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 60/116 (51%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++++D+ +  +L +  ++  GY  +   NG E +E A++ +P ++I D  +  ++G+E+ 
Sbjct: 1   LVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTGIEVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +Q+K   EL       +T+     D  +    G + ++SKPI ++     ++  + 
Sbjct: 61  RQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLR 116


>gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104]
 gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104]
          Length = 222

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED           ++  G++ +   NG++ L  A ++  DV+I+DI L   SG E
Sbjct: 2   RVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ ++     PV+ +TA   + DE      G + Y++KP S  + +  ++  +  
Sbjct: 62  VLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118


>gi|91776937|ref|YP_546693.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT]
 gi|91710924|gb|ABE50852.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT]
          Length = 1158

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + +++V+D+  N+      +E  G      RNG+EA+E   +    ++++MD+ + E+ G
Sbjct: 1032 RHILLVDDDVRNVFALTSALEQKGMKIEVARNGLEAIEKLNRIPDINLVLMDVMMPEMDG 1091

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            LE T++I+ DS  + +P+IA+TA AMK D+E+  K G   Y++KPI LS     ++ ++
Sbjct: 1092 LEATRRIRADSRFERLPIIAITAKAMKDDQEQCMKAGMNDYLAKPIELSRLYSLLRVWL 1150



 Score = 96.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 2   LKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            K+ V+++ED     ++  DL    GY  L      E L +A +++P  I++DI+L + S
Sbjct: 762 SKRLVLVIEDEPAFARILFDLAHEMGYQCLVAHAADEGLLVAEKYQPQAILLDIRLPDES 821

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           GL + + +K++   + IPV  V+    +   E     G   Y  KP +L    +   + 
Sbjct: 822 GLSVLQTLKQNGLTRHIPVHVVS---SEDHSEAALHLGAIGYALKPTTLEELKQVFARL 877



 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++VED+    +    LI       +    G +ALE  R +  D +I+D++L ++ G 
Sbjct: 886 KRVLLVEDDARQRESVHQLIADDDVEIIAVEFGEQALEQLRHNIFDCMIIDLKLPDMQGS 945

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ +++  +      PVI  T   +  DEE 
Sbjct: 946 ELLQRMSSEDICAFPPVIVYTGRNLSRDEEE 976


>gi|326802533|ref|YP_004320352.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326553297|gb|ADZ81682.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 236

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED E  ++  +  +E  GY      +G +AL+  ++ + ++II+D+ + EI G 
Sbjct: 5   QRILLVEDEEHLLEAIKLNLELEGYKVTTATDGKKALKKFKEERFNLIILDVMIPEIDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ + I+   E  E+P++ +TA     D     K G + Y+ KP +L   +  +   +  
Sbjct: 65  QVAETIR--LENTEVPIMFLTAKNTSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRR 122


>gi|294627008|ref|ZP_06705598.1| two-component system sensor protein [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292598670|gb|EFF42817.1| two-component system sensor protein [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1068

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ D+++MDI + E+ G+
Sbjct: 948  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 1007

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D ER  + G   YI+KPI +   +   + +   
Sbjct: 1008 TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1067



 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    +   +L     +  +   N  EAL LA + +P  I++DI L + SGL +
Sbjct: 682 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 741

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + +PV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 742 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 793



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+       + L+       +   +  EA++       D ++ D+ L + SG 
Sbjct: 802 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDQLAGSTFDCMVTDLALPDGSGY 861

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 862 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 921

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 922 SVEASLPSDQQRLLREA 938


>gi|238024581|ref|YP_002908813.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
 gi|237879246|gb|ACR31578.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
          Length = 1416

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++ +DN       + L+    Y      +G +AL  A++ +PD+I+ DI +  + G
Sbjct: 624 STRILVADDNADMRAYVQRLLGEQ-YEVSCAVDGYDALRAAKRSRPDLILSDIMMPGLDG 682

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + + ++ D EL+++PVI ++A A +       + G + Y+ KP S    +  +   +
Sbjct: 683 IGLLQTVRGDEELRDVPVILLSARAGEEARVHGLRAGADDYLVKPFSARELVVRVGALL 741



 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V+IV+DN         L+   G+      +  +A+  A    P V ++DI L  +SG E
Sbjct: 1301 RVLIVDDNVDAADSLSALLRLQGHTVEVAYSAEDAIRCAEAFCPQVALLDIGLPGMSGYE 1360

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + + ++    L  + ++AVT +    D     + G + ++ KP+  S  + ++
Sbjct: 1361 LARTLRAKPRLAGMRLVAVTGYGQTNDVHTAHEAGFDEHLVKPVEPSALVRSL 1413


>gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 787

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED+E+   +    +    Y      +G    E A+    D+I+ D+ L ++ G+ 
Sbjct: 2   RILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +      P++ +TA     D  R    G + Y+ KP++L      ++  +  
Sbjct: 62  LCQRLRSNG--CSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRR 118



 Score =  129 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+ L +     ++E  G       + +   E+ +   PD++I+D+++  ISG+E+
Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + ++ D + QE+P++ +TA       +++   G + Y+ KP+  +  +  I   +  +
Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERS 620



 Score = 40.5 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 46/117 (39%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++ +       + +  + G    Q      A    +   PD++++++         
Sbjct: 376 KLLLIDPDLQLGSQLQQVAYSMGMRWQQITTLEAAKNFLQTTSPDLVVLNVDEIGQREET 435

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +   +   +    IPV+A+       D   + + G   ++ KP++ S   ET  + +
Sbjct: 436 LALMVDLATHTPPIPVLALAVNDRLVDRVTLAQSGARGFLLKPVAASQVWETASQIL 492


>gi|300783817|ref|YP_003764108.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793331|gb|ADJ43706.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++V+D    ++  R  +   GY  +   +G  AL+   + KPDV+++D+ L ++ G 
Sbjct: 6   ATVLVVDDEPQIVRALRINLTARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDGT 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   ++       +P+I ++A     D+      G + Y++KP  +   +  ++  +  
Sbjct: 66  EVIAGLR---GWTTVPIIVLSARGDSADKVEALDAGADDYVTKPFGMDELLARLRAAVRR 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|294646991|ref|ZP_06724608.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294806380|ref|ZP_06765223.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|292637662|gb|EFF56063.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294446395|gb|EFG15019.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1339

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VED+E              +  +++RNG EALE   +  PD++I DI + E+ GL 
Sbjct: 1084 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1142

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++  L  IPVI +TA   + D       G +AYI KP ++ I  +T++  I
Sbjct: 1143 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199


>gi|254787196|ref|YP_003074625.1| BaeR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237684514|gb|ACR11778.1| transcriptional regulatory protein BaeR [Teredinibacter turnerae
           T7901]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+IVED      L RD +  +G+      NG+E       +  D+I++D+ L   +
Sbjct: 1   MSATVLIVEDEAELALLMRDYLLAAGFHCEIIGNGLEVERWLSTNTADIILLDLMLPGKN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I ++++  ++ + +P+I VTA   + D     + G + Y+ KP S    +  +K  +
Sbjct: 61  GLDICRELRTQAQFKTLPIIMVTAKVEEIDRLLGLELGADDYVCKPFSPREIVARVKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|237715395|ref|ZP_04545876.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405239|ref|ZP_06081789.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229444704|gb|EEO50495.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262356114|gb|EEZ05204.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1348

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VED+E              +  +++RNG EALE   +  PD++I DI + E+ GL 
Sbjct: 1093 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1151

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++  L  IPVI +TA   + D       G +AYI KP ++ I  +T++  I
Sbjct: 1152 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1208


>gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293]
 gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 233

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+   +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 709

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 66/119 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              V++VEDN +N ++ + L+   G       +G+EA+EL  +   D+++MD+Q+  + G
Sbjct: 353 TAHVLLVEDNVINQEIGKALLRQVGLEVAVAADGVEAMELLARQPFDLVLMDLQMPGMDG 412

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+ I+    L  +P++A+TA+A  G  E+    G + Y+ KPI +      + ++I
Sbjct: 413 YEATRMIRRQPSLAGLPIVAMTAYATSGVREQCLAAGMDDYLGKPIEVDQLHRVLTRWI 471


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
          Length = 1499

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VEDN +N ++   ++E  G       NG EAL+       ++++MD  + ++ G 
Sbjct: 662 RRILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAIANKVYELVLMDCHMPQMDGY 721

Query: 63  EITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E T++I+  ++  +++P+IA+TA   KGD ++    G   Y+ KP+ LS+  + ++ ++G
Sbjct: 722 EATRRIRVREAGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWLG 781

Query: 122 EA 123
            +
Sbjct: 782 TS 783



 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 59/117 (50%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V+IV+D+       R+++E  GY   +  NG +ALE  +Q  PD+++MD  +  + G  
Sbjct: 925  RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQMPDLVLMDAVMPVLDGFN 984

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               QI++  + +  PV+ +TA       E     G   YI KP+  S+  + + + +
Sbjct: 985  ACAQIRDLPDSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRKRVARLL 1041



 Score = 59.4 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           +++IV+++  + +         G     + +G +AL + R         D++++D  + +
Sbjct: 519 RLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSAAVEGRAYDLVLVDENMLD 578

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G  +  +I EDS +  + +I +               G   Y++KP+  S     I
Sbjct: 579 LKGFNLAHKITEDSLIAPVKIILMGHQHHPASSISSLP-GVVNYVAKPVQQSSLYNVI 635


>gi|27065585|pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
 gi|27065589|pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
           Structure At Ph 8.0 In The Apo-Form
 gi|27065629|pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
           In Complex With Mn2+
 gi|27065631|pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
           In Complex With Mn2+
 gi|27065632|pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
           In Complex With Mg2+
          Length = 124

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/121 (70%), Positives = 102/121 (84%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KKV+IVEDNELNMKLF DL+E  GY  LQTR G+ AL +AR++KPD+I+MDIQL EISG
Sbjct: 1   TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+TK +KED +L  IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK+ + 
Sbjct: 61  LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  ++++VED+    K+  D +   G+       G E LE       D++++D+ L E
Sbjct: 1   MAKQARLLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLMLPE 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G  + + I++     EIP++ ++A +    + +    G + YI+KP SL      I  
Sbjct: 61  LDGFTLLRTIRK---THEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITS 117

Query: 119 YIGE 122
           ++  
Sbjct: 118 HLRR 121


>gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0101]
          Length = 248

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 52/109 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G +    A++  PD++I D+ +  + G  
Sbjct: 23  RLLLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEDGWAKAQELLPDLVISDVMMPRLDGYG 82

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           + +++++D  L   PVI +TA  M  D     + GC+ YI KP      
Sbjct: 83  LLRKLRDDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDEL 131


>gi|310643960|ref|YP_003948718.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309248910|gb|ADO58477.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK+++V+D+  N+     ++E+         NG EALE+  Q    D+++MD+ + E+ G
Sbjct: 1118 KKILLVDDDIRNVFALSSVLESYRMEVTFAENGREALEMLEQTPDFDLVLMDMMMPEMDG 1177

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+   + +++P+IA+TA AMK D  +  + G   Y+ KPI     +  ++ ++
Sbjct: 1178 YEAMRRIRLMPQFEKLPIIALTAKAMKDDRSKCIEAGASDYVKKPIQTEQLLSLMRVWL 1236



 Score = 94.0 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 1    MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            M+K++++VED++   K   +LI+           G EAL      + D +++D+ L +++
Sbjct: 970  MVKRLLVVEDDDNQRKSIIELIDHDDVAITAVSTGKEALNELATQRYDCMVLDLMLSDMT 1029

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            G E+  +I+E+ +L ++P+I  T   +   EE   +   E+ I K + S    ++
Sbjct: 1030 GFELLDRIRENEQLTDLPIIIYTGKDLDSKEETQLRKYAESIIIKDVKSPERLLD 1084



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+     +  D+  + G+ AL    G + L +A  + PD II+DIQL  + G  I 
Sbjct: 853 LIIEDDINFANILYDMAHSRGFKALIALKGDDGLNMAHSYLPDAIILDIQLPVMDGWSIL 912

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
            ++K +S  + IPV  ++   +  D ++    G  AY+ KP S    
Sbjct: 913 GELKGNSSTRHIPVHVIS---VIDDVKQGLMMGAIAYLKKPSSKESL 956


>gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED     +  R  +   GY      NG +AL  A +H    I++DI L  ++G
Sbjct: 1   MVRILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +++++  +    P++ +TA   + DE      G + ++ KP S  + +  ++  I 
Sbjct: 61  YRVCRRLRDQGD--STPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|317048083|ref|YP_004115731.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316949700|gb|ADU69175.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 246

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L  D +  SGY A    NG E   +   +  D++++DI +    GL 
Sbjct: 6   HILVVDDDRDIRELITDYLMKSGYRATGAANGREMRAVLAANAVDLVVLDIMMPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ D + + +P++ +TA +   D     + G + Y+ KP      +  IK  +  
Sbjct: 66  LCRQLRSDPQ-RNLPILMLTARSEDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 123


>gi|253571309|ref|ZP_04848716.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251839262|gb|EES67346.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1333

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VEDN+       D++  +GY      NG +AL + ++  PD++I DI + E+SG 
Sbjct: 1081 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDALVIIKEFNPDLVISDIMMPEMSGD 1139

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   IK   E+  IPVI +TA   + +     + G +AYI+KP S+ I   TIK  +
Sbjct: 1140 ELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNIL 1197


>gi|256819847|ref|YP_003141126.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
 gi|256581430|gb|ACU92565.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
          Length = 1347

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+      + ++    +  L  R+G E LELA  H PD+I+ DI + +  G+ 
Sbjct: 1095 TILVVEDNDDMRDYIQHIL-NEHFHVLLARDGEEGLELAIAHIPDLIVSDIMMPKRDGIS 1153

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K+++ + +   IP+I +TA   +         G E YI+KP S  I  + I+  +
Sbjct: 1154 MVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENIL 1210


>gi|224826735|ref|ZP_03699835.1| response regulator receiver protein [Lutiella nitroferrum 2002]
 gi|224600955|gb|EEG07138.1| response regulator receiver protein [Lutiella nitroferrum 2002]
          Length = 122

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I +D    +     L++  G+  L   +G EAL   RQH+PD++++D+ + +++
Sbjct: 1   MSKTLLIADDEPNIVISVEYLMKREGFEVLVAGDGEEALAKIRQHRPDIVLLDVMMPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + ++ D  L  + ++ +TA     +  +    G + Y++KP S    +E +++ +
Sbjct: 61  GFDVCQAVRADPALAGVRILMLTAKGRDTEVAKGLALGADVYMTKPFSTRELVEKVRQLV 120

Query: 121 GE 122
           G+
Sbjct: 121 GQ 122


>gi|189460890|ref|ZP_03009675.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136]
 gi|189432464|gb|EDV01449.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136]
          Length = 1318

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLE 63
            +IV+DN+         +    Y      NG EA ++ +  +  PD+++ DI + E+ G E
Sbjct: 1071 LIVDDNDDFRLFMEYSLGLQ-YRVKLASNGKEAWDILQNSEEMPDLVVSDIMMPEMDGNE 1129

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + IKED     IPVI ++A      +      G + Y++KP +++I +  I+K I
Sbjct: 1130 LCRLIKEDKRTAHIPVILLSAKQNTESKVEGLTMGADDYVTKPFNMTILVLRIRKLI 1186


>gi|229916985|ref|YP_002885631.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468414|gb|ACQ70186.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E    L R  +E+ GY  ++  +   AL+   + +PD++++DI + E+ G+ 
Sbjct: 2   KILIVDDEEKMRHLIRLFLESDGYFCIEASDARSALDKIEE-RPDLVLLDIMMPEVDGIS 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+K       +PV+ +TA +      +    G + Y++KP   ++ +  I+  +  
Sbjct: 61  LCRQLKTMD--PALPVVLLTARSDNETTIQGLDAGADDYVTKPFDGNVLLARIRAVLRR 117


>gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
 gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D +    L    +   G+      +G +A +   + + D+ ++D+ L +I 
Sbjct: 1   MNERILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+        PVI +TA   + D+      G + Y+ KP      +  +   +
Sbjct: 61  GFELLRTIRSSHTY---PVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|146305871|ref|YP_001186336.1| response regulator receiver protein [Pseudomonas mendocina ymp]
 gi|145574072|gb|ABP83604.1| response regulator receiver protein [Pseudomonas mendocina ymp]
          Length = 395

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63
           V++V+D   N++L  +L+    Y      NG +AL +A+    PD+I++DI + E+ G E
Sbjct: 13  VLVVDDTPDNLQLISELLIDR-YRVKVASNGAKALRIAQASPAPDLILLDIMMPEMDGYE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +Q+K D + ++IPVI +TA +    E+     G   YI+KPIS  I +  ++  +
Sbjct: 72  VCRQLKADPQTRDIPVIFLTAKSEVAAEQMGFDLGAADYITKPISPPILLARVRAQL 128


>gi|78223839|ref|YP_385586.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens GS-15]
 gi|78195094|gb|ABB32861.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens GS-15]
          Length = 1216

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV+IV+D+  N+     ++     I L+  NG EALE        DV++MDI + E+ G
Sbjct: 1095 KKVLIVDDDMRNIFSLSSVLAEKKMIVLEAENGREALERLNGEPGIDVVLMDIMMPEMDG 1154

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T+ I++D     +P+IA+TA AMKGD +   K G   YI KP+     +  ++ ++
Sbjct: 1155 FAATRAIRKDPRFARLPIIALTAKAMKGDRDECLKAGASDYIQKPVDADKLLSLLRVWL 1213



 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++I+ED+     +  D++   G+ A+   +G   + LA  + P  I++D+ L  I G 
Sbjct: 827 RSILIIEDDLSFAAILMDMVRDRGFPAMVAGDGESGIALADHYLPSAIVLDVMLPHIDGW 886

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKY 119
            + K +K+    + IPV  +T      D ++    G   +++KP++   L     TI+  
Sbjct: 887 GVMKCLKDSLRTRHIPVHFLTCL---EDRQKALTMGAIGFVTKPVNSAQLDEVFSTIEHS 943

Query: 120 IGEA 123
           + ++
Sbjct: 944 LAKS 947



 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 52/103 (50%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K++IVED+    K    L+         T  G EA+ L      D I++D+ L ++SG 
Sbjct: 949  RKLLIVEDDRNEAKSMEALLGVRDVAITVTATGSEAMGLLAVEPFDCIVLDLGLSDMSGF 1008

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            E+ ++I+   E + IPVI  +   +  ++E+  +   E+ I K
Sbjct: 1009 EVLEKIQSLDESRRIPVIIHSGRDLSREDEQRLRNYAESIIIK 1051


>gi|29349146|ref|NP_812649.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341054|gb|AAO78843.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1330

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VEDN+       D++  +GY      NG +AL + ++  PD++I DI + E+SG 
Sbjct: 1078 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDALVIIKEFNPDLVISDIMMPEMSGD 1136

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   IK   E+  IPVI +TA   + +     + G +AYI+KP S+ I   TIK  +
Sbjct: 1137 ELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNIL 1194


>gi|53725149|ref|YP_102516.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
           23344]
 gi|67639865|ref|ZP_00438695.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|121599948|ref|YP_992333.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1]
 gi|124384760|ref|YP_001028967.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
           10229]
 gi|126449935|ref|YP_001081118.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
           10247]
 gi|166999933|ref|ZP_02265762.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
 gi|254177571|ref|ZP_04884226.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
           10399]
 gi|254199424|ref|ZP_04905790.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|254205739|ref|ZP_04912091.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|254357895|ref|ZP_04974168.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|52428572|gb|AAU49165.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
           23344]
 gi|121228758|gb|ABM51276.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1]
 gi|124292780|gb|ABN02049.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
           10229]
 gi|126242805|gb|ABO05898.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
           10247]
 gi|147749020|gb|EDK56094.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|147753182|gb|EDK60247.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|148027022|gb|EDK85043.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|160698610|gb|EDP88580.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
           10399]
 gi|238520472|gb|EEP83932.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|243064054|gb|EES46240.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +Q++   +  +IPVI +TA A   D     + G + Y+ KP +    +   +  +
Sbjct: 61  GLTVLRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +L     +  +E  GYI     +G E   L R +  DVII+D+ L ++ G+E
Sbjct: 2   KILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGFFLGRCYGYDVIILDVMLPKLDGME 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+    + P++ +TA     D+ +    G + Y++KP S    +  I+  +  
Sbjct: 62  LLLKLREEGV--KTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRR 118


>gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    ++   Y       G +AL+  ++H  D+ I+D+ L ++ G  I
Sbjct: 3   ILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTYDLAILDVMLPDMDGFTI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K I++       P+I +TA     D+      G + Y++KP      +  +K  +  
Sbjct: 63  CKTIRQKHTW---PIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRR 117


>gi|302339669|ref|YP_003804875.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301636854|gb|ADK82281.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 245

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D  +N+  F  ++   G+   +  +G EALE  +   PD+II+D  + ++SG +
Sbjct: 6   KILIVDDEPINLDFFDVMLSKLGFEIGRAEDGEEALEQIKSFNPDLIILDNVMPKMSGWQ 65

Query: 64  ITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +T+ +K+D    +  +IP+I  +A     D+    + G E YI+KP + S  +  I+  +
Sbjct: 66  VTRIVKQDPLFEKYHDIPIIMFSAMDDVKDKIEGFELGVEDYITKPFNFSEVLARIRAVL 125

Query: 121 G 121
            
Sbjct: 126 R 126


>gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
           nagariensis]
 gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
           nagariensis]
          Length = 1021

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62
           V+ V+D+ +N  +  +L+   GY   Q  +G EAL+  ++    PDVI++DI + ++SG 
Sbjct: 539 VLSVDDDPINQMVVENLLSPEGYKVEQAMSGSEALDFLKKTATLPDVILLDIMMPDMSGY 598

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ ++I+       IP+I V+A        +  + G   Y+ KP      +  I+  + 
Sbjct: 599 EVCQEIRRRYSAVSIPIIMVSAKGHPEHVMKGLEAGSVDYVKKPFHRQELLSRIRAQVR 657


>gi|256059315|ref|ZP_05449517.1| Probable transcriptional regulator ycf27 [Brucella neotomae 5K33]
 gi|261323274|ref|ZP_05962471.1| two-component system response regulator [Brucella neotomae 5K33]
 gi|261299254|gb|EEY02751.1| two-component system response regulator [Brucella neotomae 5K33]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D++    L  + ++  G       NG E L++  +   D++I+D+ L   SG+
Sbjct: 5   AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + ++       +P+I +TA A   D+    + G + YI+KP      +  I+  +  
Sbjct: 65  EICQDVR---LTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121


>gi|78222505|ref|YP_384252.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193760|gb|ABB31527.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 240

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED     +     +E  GY      +G EALE     +  +II+D+ L  + G  
Sbjct: 7   HILLVEDEMHLARGICFNLEMEGYRVSHVESGEEALERLAYDRFALIILDVMLPGMDGFA 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+       +PV+ +TA + +G      + G + Y++KP SL+ F+  +   +  +
Sbjct: 67  VCERIRTMD--SRVPVLILTARSDEGARVTGLQSGADDYLTKPFSLNEFLLRVGGMLRRS 124


>gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+   +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|300865283|ref|ZP_07110097.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336756|emb|CBN55247.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 498

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N++    ++   GY   +  +G   L  A    P++I++DI + ++ G E
Sbjct: 10  KILIVDDQPSNLRFLSKILTDQGYNVKRAISGQLGLNAALGSPPNLILLDIMMPDMDGYE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K     + +P+I ++       + +  + G   YI+KP  +   +  I   I
Sbjct: 70  LCQKLKSMESTRSVPIIFLSGLDDVQYKIKAFQVGGVDYITKPFQVEEVLARIDTQI 126


>gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator
            protein [Herbaspirillum seropedicae SmR1]
 gi|300075462|gb|ADJ64861.1| two component hybrid sensor histidine kinase/response regulator
            protein [Herbaspirillum seropedicae SmR1]
          Length = 1160

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 72/126 (57%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH------KPDVIIMDIQL 56
            +++++VED+  N+     ++E  G      RNG EAL+  ++         D+++MDI +
Sbjct: 1035 RRILVVEDDVRNIFALSSVLEPKGMKVEIARNGREALQALQRSQDKPDAPIDLVLMDIMM 1094

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ GL   ++I++ +  + +P+IA+TA AMK D+E+    G   YI+KP+ +   +  +
Sbjct: 1095 PEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1154

Query: 117  KKYIGE 122
            + ++ +
Sbjct: 1155 RVWMPK 1160



 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+     + RDL    G+  + T +  E +  A  ++P  I+MD+ L + SGL +
Sbjct: 769 ILVIEDDAAFAMILRDLAREMGFQCVVTHSANEGVAAAEMYRPSAILMDMNLPDFSGLGV 828

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             QIK + + + IPV  V+   +        + G   Y  KP+     +  I+K 
Sbjct: 829 LDQIKRNPKTRHIPVHVVS---VADYSHEAMERGAIGYALKPVQREELIGAIRKL 880



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED+   +   R L+       +  R   +AL   RQ+  D ++MD+ L ++SG 
Sbjct: 889 RHVLVVEDDARQLDSIRQLLAGENINLVGVRTAADALARLRQNTFDCMVMDLNLPDLSGY 948

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           ++ +++ E   +   PVI  T  ++  +EE+
Sbjct: 949 QLLEKMAEQEHVAFPPVIVYTGRSLSAEEEQ 979


>gi|300726093|ref|ZP_07059550.1| transcriptional regulatory protein ResD [Prevotella bryantii B14]
 gi|299776563|gb|EFI73116.1| transcriptional regulatory protein ResD [Prevotella bryantii B14]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++V+D E   ++ +  +E  GYI     +  EAL         ++++D+ +  +SG
Sbjct: 5   SYRILVVDDEEDLCEILKFNLEMEGYIVNTANSAEEALT-LDIASYHLLLLDVMMGGMSG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + KQ+K ++    IP++ +TA   + D       G + YI+KP S+   +  IK  + 
Sbjct: 64  FALAKQLKSNATTASIPIVFLTAKDTENDTVTGFTLGADDYIAKPFSIREVILRIKAVLR 123

Query: 122 E 122
            
Sbjct: 124 R 124


>gi|210616623|ref|ZP_03291153.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787]
 gi|210149733|gb|EEA80742.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787]
          Length = 220

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED+ +      +L+  SGY   Q  NG++ +E  +++K D+I++DI + E  G
Sbjct: 1   MKTILIIEDDIMIQNALGELLRVSGYQVFQAYNGIDGVEKFKKNKVDLILLDIMMPEKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++E S+   +P+I +TA   +  E +      + YI KP S+ + ++ I+    
Sbjct: 61  FDVCREVREMSQ---VPIIILTALDEEDAEVKCFDLKADDYIVKPYSVRVVLKRIEAIFR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|159897113|ref|YP_001543360.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890152|gb|ABX03232.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 250

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+    +L    +  +G+ A+    GM  L L       ++++D+ L ++SG E
Sbjct: 6   HILVVEDDPAIGRLLLMHLREAGWQAILANTGMTGLRLWASDCFQIVLLDVMLPDLSGWE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++ +S    +P++ +TA A   D  R    G + Y++KP S +  +  +++ I  
Sbjct: 66  LCQQLRAES---NVPILMLTAKASDDDVVRGLNLGADDYLTKPFSQAQLIARVQRLIQR 121


>gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
 gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
          Length = 219

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED +   +     ++   Y      +G   L+ A     D+II+D+ L  I+G
Sbjct: 1   MTNILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L+I +QI+++   Q  P+I +TA     D+      G + YI KP  +   +  I+  + 
Sbjct: 61  LKICRQIRQE---QSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+          ++   +      +G + LE   +   DV+++D+ L  I G
Sbjct: 1   MARVLLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLARFAADVVVLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+  S      ++ ++A     D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIRAASSTS---IVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++IV+D +  + + + ++E  GY   L   +  EA+ + + +K D+I++D+ +  +SG E
Sbjct: 17  ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 76

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               I+E     + P+  +TA +   D+      G + YI+KP +       I+ ++  
Sbjct: 77  ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 132


>gi|218437977|ref|YP_002376306.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218170705|gb|ACK69438.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 353

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++    ++  GY   +  +G +AL +     PD+I++D+++  I G E+
Sbjct: 12  ILIVDDIPENLEILFKTLQEQGYEVRRVLSGQQALMVVEADPPDLILLDVKMPHIDGYEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K   +  +IPVI ++A     D+ +  + G   YI+KP  L   +  I+  +
Sbjct: 72  CRHLKAQEKTAQIPVIFLSALHEVFDKVKAFRVGGVDYITKPFHLEEVLSRIETQL 127


>gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+E       + +    YI    ++G  A EL   ++ D+I++DI L +I G+ 
Sbjct: 2   KILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIMLPKIDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  S+  + P++ +TA     D       G + Y+ KP +L      I+  +  
Sbjct: 62  LCRRLR--SQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRR 118


>gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 241

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 20  KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 79  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 135


>gi|29349086|ref|NP_812589.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571250|ref|ZP_04848657.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29340993|gb|AAO78783.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251839203|gb|EES67287.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1381

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN   + L   L+    Y     +NG E + +  +   D+I+ D+ + E+ G+E
Sbjct: 1128 TILLVEDNGELLHLMTKLLSRE-YNVFTAQNGKEGIAVLEKEDVDLIVSDVMMPEMDGIE 1186

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              K +K   E+  IP+I +TA   + D     + G +A+ISKP +L++    I+  +
Sbjct: 1187 FCKYVKGHLEMSHIPMILLTAKNKEEDRAEAYEIGADAFISKPFNLTVLHARIRNLL 1243


>gi|21242035|ref|NP_641617.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri
            str. 306]
 gi|21107436|gb|AAM36153.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri
            str. 306]
          Length = 1068

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ D+++MDI + E+ G+
Sbjct: 948  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 1007

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D ER  + G   YI+KPI +   +   + +   
Sbjct: 1008 TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1067



 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    +   +L     +  +   N  EAL LA + +P  I++DI L + S L +
Sbjct: 682 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASSLSV 741

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + +PV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 742 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 793



 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+       + L+       +   +  EA++       D ++ D+ L + SG 
Sbjct: 802 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDQLASSTFDCMVTDLALPDGSGY 861

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 862 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 921

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 922 SVEASLPSDQQRLLREA 938


>gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51]
 gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED E   +     +   GY   +  +G   LELA   + D+I++D+ L +++G E+
Sbjct: 9   ILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++I+       +P+I +TA     D+      G   YI+KP ++   +  I+  + 
Sbjct: 69  LRRIR---RTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALR 122


>gi|317474841|ref|ZP_07934111.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316908979|gb|EFV30663.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1179

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++V+DN     + +  +E   +      +G+E L++   H PDV++ D  +  + G+E+
Sbjct: 921  VLVVDDNVDLCNMLKLQLEDR-FNIHLAHDGVEGLKMVNFHHPDVVVTDQMMPCMDGMEM 979

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K+I+ D ++  IPVI +TA   +  + +    G  AYI KP S    +  I++ +GE
Sbjct: 980  LKRIRGDFQISHIPVIMLTAKGDEDSKIQAISQGANAYIVKPFSKDYLVVRIEQLLGE 1037


>gi|315225247|ref|ZP_07867064.1| two component system sensor histidine kinase regulator
            [Capnocytophaga ochracea F0287]
 gi|314944930|gb|EFS96962.1| two component system sensor histidine kinase regulator
            [Capnocytophaga ochracea F0287]
          Length = 1348

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+      + ++    +  L  R+G E LELA  H PD+I+ DI + +  G+ 
Sbjct: 1096 TILVVEDNDDMRDYIQHIL-NEHFHVLLARDGEEGLELAITHIPDLIVSDIMMPKRDGIS 1154

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K+++ + +   IP+I +TA   +         G E YI+KP S  I  + I+  +
Sbjct: 1155 MVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENIL 1211


>gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
 gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
          Length = 225

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED++         +   G+      +G + L+L R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
 gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
          Length = 252

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D      L    +  +G+  +   +G  A  LA    PD+I++D+ L ++ G 
Sbjct: 28  ARLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVMLPDMDGF 87

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++++  +    IPV+ +TA     D+ +    G + Y++KP  L   +  I+  +  
Sbjct: 88  TVTRRLR--NAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 145


>gi|219666561|ref|YP_002456996.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
 gi|219536821|gb|ACL18560.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
          Length = 1022

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D   N+++   ++E   Y      +G +ALE  +  K  +++ D+ +  +SG
Sbjct: 693 MKKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEKFHLLLTDLMMPGMSG 751

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +E+T+QI+++  L E+P+I  TA   + + E   + G   YI+KP +       ++  +
Sbjct: 752 IELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLL 810


>gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 233

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D +    L    +   G+   +  N  +AL+L      D++I+DI L+++ 
Sbjct: 4   MNDKIIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALDLVESENFDLMILDIMLEDMD 63

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+E       P+I +T+     D+      G + YI+KP +    +  +K  +
Sbjct: 64  GFSVCKKIREKHYF---PIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|169828266|ref|YP_001698424.1| ethylene receptor [Lysinibacillus sphaericus C3-41]
 gi|168992754|gb|ACA40294.1| Ethylene receptor [Lysinibacillus sphaericus C3-41]
          Length = 1015

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 63/117 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D  +N+++   ++    Y  +   +G+EAL   + H+ D++I D+ + ++SG E
Sbjct: 683 RILVVDDEPINLRVVETILANEPYDIVTVTSGIEALVCIQSHEWDLVISDVMMPKMSGYE 742

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + I++   + ++PV+ +TA +   D E     G   Y++KP+        +   I
Sbjct: 743 LVRLIRKQFSITDLPVLLLTARSQPQDLENGFLAGANDYVTKPVDALELRSRVAALI 799


>gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G   ++   +   D++I+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  +++    A     G E L+  ++ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans]
          Length = 231

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D      L    ++   Y   +     EAL+   + + D+ I+DI L   S
Sbjct: 1   MSNKILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIMLPGAS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I++       P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLSICQKIRDKYTY---PIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
 gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1
 gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
          Length = 225

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED++         +   G+      +G + L+L R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA     D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|306845944|ref|ZP_07478511.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
 gi|306273579|gb|EFM55424.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
          Length = 461

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI VT  A   D+ R  + G E ++SKP++    +  +K  I
Sbjct: 61  GFEVCRRLKANPRTANIPVIMVTCLASPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLI 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+++EL     R ++    Y      +   AL  A +   D II+         L
Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++  Q++     + IP+I +          R  + G   Y+ +P+        ++  I  
Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278


>gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++IV+D++  + L  D++E   Y   +  +G EA+    +   D+II+DI L +I
Sbjct: 1   MNKGKILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKESFDLIILDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+++ ++I++        +I +TA     D+    + G + YI+KP         +K +
Sbjct: 61  DGIDVCRKIRDKFLGT---IIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAH 117

Query: 120 IGE 122
           + +
Sbjct: 118 LRK 120


>gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 503

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D   N++L   L+   GY       G      A+   PD++++D+ + E++G E+
Sbjct: 8   ILVIDDTPENLQLLTRLLTAQGYKVRSVTKGSTGCRAAQSAPPDLVLLDVNMPEMNGYEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K   E Q+IPVI ++A     ++ +    G   YI+KP  +   +  ++ ++
Sbjct: 68  CQQLKARPETQDIPVIFISAHEDVLEKVKAFSMGGVDYITKPFQVEEVLARVEHHL 123


>gi|90419568|ref|ZP_01227478.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
 gi|90336505|gb|EAS50246.1| response regulator [Aurantimonas manganoxydans SI85-9A1]
          Length = 454

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D E+N+++    +    Y  +   +G  ALE+ R    D++++D+ + E+ 
Sbjct: 1   MTARILIVDDLEINLRVLEARLTAEYYDVVTATSGAAALEICRNQSIDLVLLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + +K D E+  +P++ +TA     D     + G + +++KP+        ++   
Sbjct: 61  GFEVCRLMKNDPEMMHLPIVLITALDQPSDRVAGLEAGADDFLTKPVRDLPLFSRVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 10  DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIK 69
           D+   ++  +  ++        T +    L  A   + DVI++D+       L +  Q +
Sbjct: 161 DSADEVRRLQKHLKGI-ATVEVTDDAAAMLAAATAGQVDVILVDLAASAGDPLRLVSQFR 219

Query: 70  EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            ++  + +PVI + A        +  + G   Y+ +P+  +  + 
Sbjct: 220 SNAATRHLPVIGIAAAGDDVGAAKALELGANDYLQRPLDRNELVA 264


>gi|317476245|ref|ZP_07935496.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316907656|gb|EFV29359.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 375

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +      NG +ALE   +  PD++++D+ + ++SG E
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVDKEHPDLVLLDVMMPDLSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K + +  +IP+I +TA     D  +  + G   +ISKP +    +  +
Sbjct: 71  VAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 123


>gi|301059424|ref|ZP_07200345.1| putative Response regulator PleD [delta proteobacterium NaphS2]
 gi|300446460|gb|EFK10304.1| putative Response regulator PleD [delta proteobacterium NaphS2]
          Length = 312

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 58/117 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I EDN ++ KL    +  +GY  +   NG EA ++ ++    +I+ D  + E+ GLE+
Sbjct: 7   ILIAEDNAVSRKLMEKTLRQAGYAVVSAANGREAFKIFKERFFPIILTDWGMPEMDGLEL 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + I+E+     + +  +T    + D     + G + Y++KP   S  +  +K  + 
Sbjct: 67  CRAIRENPTEGYVFIFLITGRDSRKDIIVGLEAGADDYLTKPFDRSELIARLKTALR 123


>gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 231

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +   +L    +   G+      +G  AL    +   DV ++D+ L +I 
Sbjct: 1   MAEKIIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETVDVAVLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +QI++       PV+ +TA     D+      G + Y++KP +    +  +K  +
Sbjct: 61  GFQLLQQIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|284032333|ref|YP_003382264.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283811626|gb|ADB33465.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 237

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+     +    +  +GY A    +G++A+E+ +Q KP V+++D+ L  +S
Sbjct: 1   MATRVLVVDDDPTVSNVVSAYLTKAGYDARVVPDGVKAVEVWQQWKPSVVVLDVMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++   +     VI ++A   + D     + G + Y+ KP S    +  ++  +
Sbjct: 61  GLEVLRRLRSADDGAA--VIMLSARGEEEDRLVGLEVGADDYVVKPFSPRELVLRVQALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV+D +   +  +  ++  GY  ++  +G EA+++  + +P + I+DI L  +SG 
Sbjct: 6   KKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKERPALAILDIMLPGMSGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+ ++ +    +I V+A +   D+    + G + YI KP +    +  ++  +  
Sbjct: 66  EVCEKIRTEAPMTG--IIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRR 123


>gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY]
 gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY]
          Length = 1137

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQL 56
            + +++VED+  N+     ++E +G      RNG EALE         +   D+++MDI +
Sbjct: 1012 RTILVVEDDVRNVFALSSVLEPTGARVEIARNGREALEALERSNAAGESAVDLVLMDIMM 1071

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ G     +I+   E + +P+IA+TA AMK D+E+    G   YI+KP+ +   +  +
Sbjct: 1072 PEMDGFAAMAEIRRRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1131

Query: 117  KKYIGE 122
            + ++ +
Sbjct: 1132 RVWMPK 1137



 Score =  100 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ED+    ++  DL    G+  +    G + L  A ++ P  +++D+ L + SGL 
Sbjct: 745 TILVIEDDPRFARILCDLAHEMGFQCVIASTGSDGLAAALEYGPSAVVLDMNLPDFSGLG 804

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           +  Q+K +   + IPV  V+   +    +   + G   Y  KP+      + +
Sbjct: 805 VLDQLKRNPATRHIPVHVVS---VADYMQEAMERGAIGYALKPVKREELEQAL 854



 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 51/95 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++V++VED+    +    L+ T G   +      +AL+L +    D ++MD+ L +++G
Sbjct: 865 MRRVLVVEDDARQRESVHHLLATDGVEIVGAATARQALDLLKGSTFDCVVMDLHLPDLNG 924

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            E+ +Q+ E  E+   PVI  T   +  DEE+  +
Sbjct: 925 YELLQQMAEQEEVSFPPVIVYTGRNLSRDEEQQLR 959


>gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 250

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-------RQHKPDVIIMDIQL 56
           ++++VED  L  ++    ++  GY  +   +G  AL L         + +  ++I+D+ L
Sbjct: 20  RILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +++GL++ + I+   +   IP++ ++A A + D     + G + Y++KP S+   +   
Sbjct: 80  PQVNGLDLCRLIR--YKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIARC 137

Query: 117 KKYIGE 122
           +  +  
Sbjct: 138 RALLRR 143


>gi|317478303|ref|ZP_07937467.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
 gi|316905462|gb|EFV27252.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
          Length = 1342

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VEDN   +      +    YI L   NG EAL +  ++  ++I+ D+ +  + G E
Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILDENFVNLIVSDVVMPLMDGFE 1155

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K +K   +   IP+I +TA      +    + G +AYI KP S    +  I   I
Sbjct: 1156 LCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLI 1212


>gi|290769859|gb|ADD61631.1| putative protein [uncultured organism]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  ++     A     G E L+  ++ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + LEL R+ +PD++++D+ L  I G E+ 
Sbjct: 8   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 68  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121


>gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    ++   ++   GY      +G  A+   +Q +PD++++D+ L   +GL+
Sbjct: 17  RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + I+  S    +P++ +TA     D  +  + G + Y++KP      +  ++  +  
Sbjct: 77  ICQDIRTQS---TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR 132


>gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 237

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++V+D      L    ++   Y   ++     ALE     K D+ I+D+ L +I 
Sbjct: 1   MSYKVLVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKLDLAILDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I K+I+E       PVI +TA   + D       G + Y++KP      M  +K  +
Sbjct: 61  GFQICKKIREKYTY---PVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|160891619|ref|ZP_02072622.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492]
 gi|156859026|gb|EDO52457.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492]
          Length = 1342

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VEDN   +      +    YI L   NG EAL +  ++  ++I+ D+ +  + G E
Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILDENFVNLIVSDVVMPLMDGFE 1155

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K +K   +   IP+I +TA      +    + G +AYI KP S    +  I   I
Sbjct: 1156 LCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLI 1212


>gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 222

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED           ++  G++ +   NG++ L  A ++  D++I+DI L   SG E
Sbjct: 2   KVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIMLPGRSGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ ++     PV+ +TA   + DE      G + Y++KP S  + +  ++  +  
Sbjct: 62  VLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118


>gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 240

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 1   ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M+  K+++ +ED    +   R  +E  G+       G +AL+   +   D II+DI L +
Sbjct: 1   MMSPKQILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYLSEQAFDFIILDIGLPD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G E+ KQ+++ S+    P++ +TA   + D     + G + Y +KP S    +  IK 
Sbjct: 61  LNGFEVCKQLRQKSQT---PLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKA 117

Query: 119 YIGE 122
               
Sbjct: 118 IWRR 121


>gi|312960833|ref|ZP_07775338.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
            WH6]
 gi|311284491|gb|EFQ63067.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
            WH6]
          Length = 1165

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G +    RNG EA+E   +    D+++MD+ + E+ G
Sbjct: 1041 RKILLVDDDVRNIFALTSALEHKGAVVAIGRNGREAIERLNEIDDIDLVLMDVMMPEMDG 1100

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T  I++D   +++P+IAVTA AMK D+ER    G   Y++KPI L      I+ ++ 
Sbjct: 1101 YEATALIRQDPRWKKLPIIAVTAKAMKDDQERCLAAGSNDYLAKPIDLDRLFSLIRVWLP 1160

Query: 122  E 122
            +
Sbjct: 1161 K 1161



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 775 ILVVEDEPNFARILFDLAHELGYQCLVAHGADEGYSLAEEYIPDAILLDMRLPDHSGLTV 834

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++      D        G   Y  KP +     +   + 
Sbjct: 835 LQRLKEHANTRHIPVHVIS----VEDRVEAAMHMGAIGYAVKPTTREELKDVFARL 886



 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++VED++L       LI              EAL+L R +  D +I+D++L ++ G 
Sbjct: 895 KRVLLVEDDDLQRDSIARLIGDDDIEITAVGFAQEALDLLRNNVYDCMIIDLKLPDMLGN 954

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92
           E+ K++  +      PVI  T   +  DEE
Sbjct: 955 ELLKRMATEDICSFPPVIVYTGRNLTRDEE 984


>gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
 gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
          Length = 245

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 49/112 (43%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           V+D        +  +E  G+      +G E    A+Q  PDV+I D+ +  + G  + ++
Sbjct: 24  VDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFAKAQQMLPDVVISDVMMPRLDGYGLLQK 83

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           ++ D  L   PVI +TA  M  D  +    G + YI KP      +  ++  
Sbjct: 84  LRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 135


>gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 222

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED           ++  G++ +   NG++ L  A ++  DV+I+DI L   SG E
Sbjct: 2   KVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ ++     PV+ +TA   + DE      G + Y++KP S  + +  ++  +  
Sbjct: 62  VLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118


>gi|238028314|ref|YP_002912545.1| putative two-component system, response regulator [Burkholderia
           glumae BGR1]
 gi|237877508|gb|ACR29841.1| Putative two-component system, response regulator [Burkholderia
           glumae BGR1]
          Length = 241

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IV+D++    L RD +   G       +     +   + +PD+I++D+ +  + 
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL   ++++   +  +IPVI +TA A   D     + G + Y+ KP +    +   +  +
Sbjct: 61  GLTALRRLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|168182546|ref|ZP_02617210.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182674404|gb|EDT86365.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +   +     +   G    + ++G++AL L  +    +IIMDI +  + G++
Sbjct: 5   KVLIVDDEDEIREAIEIYLRNEGITVFKAKDGIDALMLLEEKDIHLIIMDIMMPRMDGIK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+E+   + IP+I ++A +   D+      G + YI+KP ++   +  IK  +  
Sbjct: 65  ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYITKPFNMLELVARIKSQLRR 120


>gi|163788047|ref|ZP_02182493.1| transcriptional regulator [Flavobacteriales bacterium ALC-1]
 gi|159876367|gb|EDP70425.1| transcriptional regulator [Flavobacteriales bacterium ALC-1]
          Length = 350

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+++ED+ +  +   +L+E S Y  +   NG   ++ A +  PD+II DI + E+ G
Sbjct: 1   MKKVLLIEDDAILRENTAELLELSDYDVVTAANGKLGVDKAIETMPDIIISDIMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + +  +   + IP I ++A   + D  +    G + YI+KP S    +  I+  I 
Sbjct: 61  YGVLEALSSNDNTKHIPFIFLSAKTERQDVRKGMNLGADDYITKPFSEDELISAIESRIA 120

Query: 122 EA 123
           +A
Sbjct: 121 KA 122


>gi|186685422|ref|YP_001868618.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186467874|gb|ACC83675.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 462

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D   N++L   ++   G+   +  NG  AL   +   PDVI++DI +  + G 
Sbjct: 11  KNILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQMVLPDVILLDINMPGMDGY 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++ +Q+K D +  E+PVI ++A     D+ +    G   YI+KP   +  +  I+  I
Sbjct: 71  QVCQQLKADDKTCEVPVIFISALDDVVDKVKAFDVGGVDYIAKPFHGAEVVLRIENQI 128


>gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 584

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 6/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  + +  ++  G      ++G+EA+ +  +   D+++MD Q+ E+ G E
Sbjct: 462 RVLLVEDNAVNQLVAQAFLQRFGLQVSLAKDGLEAVRMTAEQPFDLVLMDCQMPELDGFE 521

Query: 64  ITKQIKEDSELQ------EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            T+QI+   + +       +P+IA+TA   +GD ER    G   +I+KP         + 
Sbjct: 522 ATQQIRAREKARGSTGRAAMPIIALTANVFEGDRERCFSSGMNDFIAKPFKQDELYAVLA 581

Query: 118 KYI 120
           +++
Sbjct: 582 RWL 584


>gi|156972517|ref|YP_001443424.1| transcriptional regulator CpxR [Vibrio harveyi ATCC BAA-1116]
 gi|156524111|gb|ABU69197.1| hypothetical protein VIBHAR_00149 [Vibrio harveyi ATCC BAA-1116]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D+     L ++++   G+   +  +G   L        D+I++D+ + +++G
Sbjct: 1   MAKILLIDDDTELTSLLKEVLSFEGFDVTEANDGEAGLAAINSE-IDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E+ E    PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|152964302|ref|YP_001360086.1| response regulator receiver protein [Kineococcus radiotolerans
           SRS30216]
 gi|151358819|gb|ABS01822.1| response regulator receiver protein [Kineococcus radiotolerans
           SRS30216]
          Length = 806

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 57/117 (48%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+E+   L    +  +G   +   +G EAL+   +  PDV++ D+ +  + G  + 
Sbjct: 20  LVVDDDEMISHLVSAGLRAAGMTVVTASDGREALQRLAEAVPDVVVSDVNMPGMDGFALV 79

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++ +   + +P++ +T+ A   D     + G + Y+ KP  L+  +  +   +  
Sbjct: 80  SRLRAEPATRAVPLVFLTSRAEASDALAALRLGADDYVRKPFDLTELVARVVAKLDR 136


>gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++ + G++     +G  AL   R+ +PD++++D+ L  +S
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRESRPDIVLLDLMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + I+ +S    +P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GIDVARSIRGESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 226

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED     +     +   GY      +G+ AL  AR+   D++I+D  L  +SG
Sbjct: 1   MTHILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARELDIDLVILDWMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGD--EERIRKGGCEAYISKPISLSIFMETIKKY 119
           LEI ++++   +  ++PVI +TA     D         G + Y+ KP S+   +  ++ +
Sbjct: 61  LEICRRLRSTGD--QVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAH 118

Query: 120 IGE 122
           +  
Sbjct: 119 LRR 121


>gi|89893285|ref|YP_516772.1| hypothetical protein DSY0539 [Desulfitobacterium hafniense Y51]
 gi|89332733|dbj|BAE82328.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1022

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D   N+++   ++E   Y      +G +ALE  +  K  +++ D+ +  +SG
Sbjct: 693 MKKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEKFHLLLTDLMMPGMSG 751

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +E+T+QI+++  L E+P+I  TA   + + E   + G   YI+KP +       ++  +
Sbjct: 752 IELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLL 810


>gi|93007040|ref|YP_581477.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394718|gb|ABE75993.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 2/125 (1%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE- 58
           M K +++IVED +   ++    +E +G+ +LQ  +  EA +    H+P +I++D  L   
Sbjct: 1   MSKEQILIVEDEDAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDHRPALILLDWMLPGD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SG++  + +K D+ L EIPVI +TA + +  +      G + Y++KP S    +  IK 
Sbjct: 61  KSGIDFCRMLKSDTLLAEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKA 120

Query: 119 YIGEA 123
            +  +
Sbjct: 121 VLRRS 125


>gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 230

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D      L    +  +G+      NG + +    + +PD+I++D+ L +++G  
Sbjct: 5   RILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVMLPDMNGFS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK+++        P++ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 65  VTKRLRGAGYTA--PILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRR 121


>gi|294643180|ref|ZP_06721009.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|292641478|gb|EFF59667.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
          Length = 1307

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+  +      + +  Y  L   NG+EAL++  Q   D+II DI +  + G+E+
Sbjct: 1062 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1120

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K++ +   IPVI +TA           + G +AYI KP S+      +   +
Sbjct: 1121 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1176


>gi|293369022|ref|ZP_06615621.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292635894|gb|EFF54387.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1307

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+  +      + +  Y  L   NG+EAL++  Q   D+II DI +  + G+E+
Sbjct: 1062 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1120

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K++ +   IPVI +TA           + G +AYI KP S+      +   +
Sbjct: 1121 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1176


>gi|253581956|ref|ZP_04859180.1| transcription regulator [Fusobacterium varium ATCC 27725]
 gi|251836305|gb|EES64842.1| transcription regulator [Fusobacterium varium ATCC 27725]
          Length = 239

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 70/122 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D    ++L +  +E  GY    T  G   + L  + KPD+I++D+ L E++
Sbjct: 1   MGKKILIVDDEIHILELLKLNLEIYGYEVFTTDTGKGVMSLIEKIKPDIILLDLMLPEVN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K+I+ +S L EI ++ ++A + + D+    + G + YI+KP SL   +  I  + 
Sbjct: 61  GIDICKRIRNNSSLNEIRILIISAKSEEIDKIVCLEIGADDYITKPFSLREIIARINAFS 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|237721722|ref|ZP_04552203.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448591|gb|EEO54382.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1329

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+  +      + +  Y  L   NG+EAL++  Q   D+II DI +  + G+E+
Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K++ +   IPVI +TA           + G +AYI KP S+      +   +
Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1198


>gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426]
 gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426]
          Length = 1342

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 1006 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1065

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1066 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1120



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 863 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 922

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 923 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 976


>gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E P++ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQRIR--DEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|256823584|ref|YP_003147547.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256797123|gb|ACV27779.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 227

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED++       + +E  GYI     +G+  L LA+ ++ D +I+D+ L  + 
Sbjct: 1   MAYSILLVEDHKELAATTGEYLEACGYIVDYAMDGISGLNLAKNNQYDALILDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+++++  +IP++ +TA     D+      G + Y+ KP         +   I
Sbjct: 61  GFTICQRIRQEAQ-SDIPILMLTARDQLSDKLDGFDAGADDYLIKPFDFEELDARLNAII 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|260642135|ref|ZP_05414654.2| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260623317|gb|EEX46188.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1329

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+  +      + +  Y  L   NG+EAL++  Q   D+II DI +  + G+E+
Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K++ +   IPVI +TA           + G +AYI KP S+      +   +
Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1198


>gi|170077988|ref|YP_001734626.1| two-component system response regulator [Synechococcus sp. PCC
           7002]
 gi|169885657|gb|ACA99370.1| two-component system response regulator [Synechococcus sp. PCC
           7002]
          Length = 131

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 71/127 (55%), Gaps = 7/127 (5%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-------PDVIIMDI 54
           + ++++VED+    ++  +L++ +G       +G+EALE   Q         P++I++DI
Sbjct: 1   MSRILVVEDSLSQREMISELLKGNGLTVDVAGDGLEALETLSQMAKNAAETLPNLIVLDI 60

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            +  ++G E+ +++K D ++Q IP++  ++   + D     K G +AYI+KP   +  + 
Sbjct: 61  VMPRMNGYELCRRLKSDPKIQNIPIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPAELIG 120

Query: 115 TIKKYIG 121
           TIK+ + 
Sbjct: 121 TIKQLLR 127


>gi|153871117|ref|ZP_02000368.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152072416|gb|EDN69631.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 295

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 66/116 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IV+DN    K+ R  +  +GY  L+  NG  ALE  +++ P+V+++D+ + +++G
Sbjct: 1   MSKVLIVDDNLKTRKMLRRHLLKNGYETLEAENGHVALESVKENLPEVVLLDVMMPDMTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           +E+ +++++    + + +I +TA      +      G + YI+KP  +   M  I+
Sbjct: 61  IEVCQKLRQTPHYELVYIIMLTALTSSEQKVEGLDQGADDYITKPFDVYELMAHIR 116


>gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D +    L    +   GY   +   G EAL++  + +  +I++DI +  + G
Sbjct: 1   MNNILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIMMPHMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E      IP++ ++A +   D+ +    G + Y+ KP +    +  +K  + 
Sbjct: 61  LEVCRRVREK---YNIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|120556581|ref|YP_960932.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinobacter aquaeolei VT8]
 gi|120326430|gb|ABM20745.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinobacter aquaeolei VT8]
          Length = 328

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++V+D   N+++ R+++    Y  L  ++G  ALELAR  KPD++++D+ +  +SG
Sbjct: 5   TKTLLLVDDEPANLQVLRNILSDQ-YRLLFAKDGERALELARSEKPDLVLLDVMMPGMSG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   +K   + + IPVI VTA +   DE R  + G   Y++KP++ +I    +K ++
Sbjct: 64  YEVCNALKAGQDTRAIPVIFVTALSDADDEARGFELGAVDYLTKPVNAAIVRARVKNHL 122


>gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O395]
 gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
 gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O395]
 gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O395]
 gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
          Length = 1331

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|320160764|ref|YP_004173988.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994617|dbj|BAJ63388.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 253

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VED    + L + ++  +GY  L   NG EA++      PD+I++D+ + E+ G 
Sbjct: 27  QTILVVEDEPDTVFLLKQILRMAGYNVLSAVNGYEAIQKCMDIHPDLILLDLMMPEMDGW 86

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  + ++E     ++PVI ++A   K D  R  + G + YI+KP   +  +  ++  +  
Sbjct: 87  QTYQYLRE---ATDVPVIVISAIHNKEDVVRALRIGMDDYITKPFVNAEVVARVQAVLRR 143

Query: 123 A 123
           A
Sbjct: 144 A 144


>gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 237

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +   +     ++  GY  +   NG +AL+ A     D I++D+ L +++G
Sbjct: 1   MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +++++    +  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  LEIARRVRQS---KTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|317131537|ref|YP_004090851.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469516|gb|ADU26120.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 247

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   VMIVEDN     +    ++  GYI L  ++G EAL L  Q    ++++D+ +  I 
Sbjct: 20  MQYTVMIVEDNAEIRGIVTKYLDAEGYIPLFAKDGFEALALFAQRLVHLVLLDVMMPGID 79

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++   + ++PVI +TA   + D       G + Y+ KP SL   M+ +   I
Sbjct: 80  GFEVLRELRK---ISDVPVILLTARQEETDRLNGFDCGADDYVVKPFSLKELMKRVNALI 136

Query: 121 GE 122
             
Sbjct: 137 RR 138


>gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae CT 5369-93]
 gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae CT 5369-93]
          Length = 1331

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D     +  R  ++  GY      +G  AL++AR+  PDV+I+D+ L +I G+ +
Sbjct: 4   VLVVDDEPAICRTLRINLKARGYEVETATDGRSALQIARERTPDVVILDLGLPDIDGVTV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++E       PVI ++A     D+      G + Y++KP  +  F+  ++  +  
Sbjct: 64  LSKLRE---FCASPVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRR 118


>gi|209964322|ref|YP_002297237.1| DNA-binding response regulator, putative [Rhodospirillum centenum
           SW]
 gi|209957788|gb|ACI98424.1| DNA-binding response regulator, putative [Rhodospirillum centenum
           SW]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L    +   GY     ++G E          D++++D+ L    GL 
Sbjct: 6   HLLIVDDDREIRDLLTRYLARHGYRVTAAKDGQEMRRYLADRNIDLVVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+ D      PV+ ++A     D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  LCRAIRADGG---PPVVMLSAMGEDADRILGLEIGADDYLPKPFNPRELVARIKAVLRR 121


>gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
 gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
          Length = 260

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    +    ++   Y  L+   G EAL+     K D+ I+DI L ++ G +I
Sbjct: 34  ILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIMLPDVDGFQI 93

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            KQI+E       PVI +TA     D+      G + YI KP +    +  +K  I  
Sbjct: 94  LKQIREKYTF---PVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRR 148


>gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 257

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L +  +   G+      NG +AL  AR+ KPD +++DI L ++ GL+
Sbjct: 32  RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGLQ 91

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++ D+E  +IPV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 92  VLSRLRADAE--DIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 149


>gi|119493892|ref|ZP_01624456.1| Response regulator receiver domain protein (CheY) [Lyngbya sp. PCC
           8106]
 gi|119452369|gb|EAW33561.1| Response regulator receiver domain protein (CheY) [Lyngbya sp. PCC
           8106]
          Length = 117

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 68/116 (58%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+VED+    ++  +L++ SG       +G+EALE  ++H PD++++DI +  ++G E+ 
Sbjct: 1   MVVEDSVTQREMISNLLKDSGLHVTVASDGVEALEQVQKHCPDLVVLDIVMPRMNGYELC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++K D + Q I V+  ++   + D     K G +AYI+KP   +  + T+K+ + 
Sbjct: 61  RRLKSDPKTQSIAVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 116


>gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D    + + + ++E   Y  +   NG + +E+ ++  PD+II+D+ L + SG
Sbjct: 1   MAKILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVMLPDESG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I K+I     L ++P+I +TA     D+    + G + Y++KP      +  +K  + 
Sbjct: 61  FDILKKI---VPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE  ++  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRR 117


>gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein
            [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein
            [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1138

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV+I +D+  N+       E          NG EAL+L  ++   D+++MDI + E+ G
Sbjct: 1019 KKVLIADDDMRNVFALSTAFEAYNMQIEIANNGREALQLLDKYPDFDLVLMDIMMPEMDG 1078

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+E+ +  ++P+IAVTA AMKGD ER  + G   YISKPI L   +  ++ ++
Sbjct: 1079 FEAIEKIRENKKFAQLPIIAVTAKAMKGDRERTIQIGANDYISKPIDLDKLISLMRVWL 1137



 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 5/121 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++I+ED+    ++ +D     G+      NG E LE A Q +PD II+DI L  + G 
Sbjct: 748 KRLLIIEDDVNFSEILKDYAVEHGFDPSVAYNGKEGLETAIQTQPDAIILDIMLPIMDGW 807

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
           E+ K++K D + ++IPV  ++A ++  DE      G   ++ KP++        +TIK  
Sbjct: 808 EVLKKLKNDDKTKDIPVHMMSAASLHKDEP--INKGAIGFLRKPVTEDSLENAFKTIKSL 865

Query: 120 I 120
           I
Sbjct: 866 I 866



 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
           K+V+I+ED+ L     +  +     +  Q  N  EA+E LA +   D II+DI L + SG
Sbjct: 871 KRVLIIEDHTLQSDFIKSSLNERNTVVDQAFNADEAMEILAAKKSYDCIILDINLPDKSG 930

Query: 62  LEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRK 96
           LE+   IK     Q  P+I  TA    +   ERI +
Sbjct: 931 LELLDDIKAIDTYQHTPIIINTAMELSQESTERILR 966


>gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall
           processes YvrG [Bacillus subtilis subsp. subtilis str.
           168]
 gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
 gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH
 gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall
           processes [YvrG] [Bacillus subtilis subsp. subtilis str.
           168]
 gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
          Length = 237

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++IV+D +  + + + ++E  GY   L   +  EA+ + + +K D+I++D+ +  +SG E
Sbjct: 6   ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               I+E     + P+  +TA +   D+      G + YI+KP +       I+ ++  
Sbjct: 66  ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 121


>gi|73670561|ref|YP_306576.1| response regulator receiver [Methanosarcina barkeri str. Fusaro]
 gi|72397723|gb|AAZ71996.1| response regulator receiver [Methanosarcina barkeri str. Fusaro]
          Length = 285

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 64/118 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D   N++L    +    Y  +   +G EA++  ++ K D+I++D+ + E+ G E
Sbjct: 9   KVLIVDDVLENIELIEAYLSVEPYNLITASSGKEAIQKLKEEKLDMILLDVMMPEVGGYE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +K + E Q IPV+ +TA +   D     + G + +++KPI+       +K  + 
Sbjct: 69  VCRIVKNNPETQFIPVLMLTALSEIEDRITGIEAGADDFLTKPINRLELKTRVKSLLR 126


>gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 233

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|154503148|ref|ZP_02040208.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
 gi|153796142|gb|EDN78562.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
          Length = 235

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+DN+  +    +L++  GY  ++  +GMEAL     +  D+I++D+ +  ++GL 
Sbjct: 5   TILVVDDNQEIVYSISELLKYEGYQVVKAYDGMEALNALEINNIDLILLDVMMPRLNGLS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +++E+     IPVI ++A   + D+      G + Y+ KP + +  +  IK ++  
Sbjct: 65  ALMKLRENYR---IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELIARIKAHLRR 120


>gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+ + ++      E +G+      +G+  LE+AR+  PD+II+D+ L  + G
Sbjct: 1   MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +    +  ++   +P++ +TA   +       + G   Y+ KP S+   +  ++  + 
Sbjct: 61  FSVC---RAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR 117


>gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217]
 gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 240

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +    IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQQNN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|70732320|ref|YP_262076.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68346619|gb|AAY94225.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 236

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+   + L +      GY  +   +G        +  PD+II+D+ L   +G
Sbjct: 1   MSRLLIVDDDIEVLALLKKFFVQQGYQVVVATDGASLWAALEREVPDLIILDLMLPGDNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + +++++       PVI +TA     D     + G + Y+SKP      +  ++  + 
Sbjct: 61  LTLCQRLRQQHAT---PVIMLTAMGELSDRVVGLEMGADDYLSKPFDARELLARVRAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1014

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN       R ++ +S +      +G  ALE AR   PD+I+ D+ +  + G  
Sbjct: 652 RLLLADDNADMRDYVRRVLSSS-FEVEAVPDGQAALEAARACVPDLILTDVMMPRLDGFG 710

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + ++++ D   + +PV+ ++A A +       + G + Y+ KP S    +  +
Sbjct: 711 LLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARV 763


>gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 230

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++VED +   K  +  +E  GY   +   G + + +AR+  P+++++D+ L  I 
Sbjct: 1   MSTKILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + ++   E  E+ ++ +TA     D+    + G + Y++KP + +     IK   
Sbjct: 61  GFEVCRILR--GEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLE 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|294673053|ref|YP_003573669.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
 gi|294472787|gb|ADE82176.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
          Length = 1314

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IV+D+E   +   +  +   Y  +   +G+EAL L +QH+  +II D  +  + G E  
Sbjct: 1066 LIVDDSEDMRQFLENNFKDK-YHIITAGDGIEALHLLQQHQVSIIISDWMMPRMDGAEFC 1124

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++++     IP + +TA      + +    G +AYI KP S+      I+  +
Sbjct: 1125 RRVRQNPLTSHIPFVMLTAKTDDNSKVKGMDVGADAYIEKPFSVQYLEACIRNIL 1179


>gi|293372359|ref|ZP_06618743.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292632542|gb|EFF51136.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1372

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDNE   K   +    S +  L   NG E  + A    PD+++ DI +  + G+ + 
Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGIILC 1172

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+KED     IPVI +TA     D+E   + G ++Y++KP S S+    I   +
Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227


>gi|262408473|ref|ZP_06085019.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294810661|ref|ZP_06769310.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|262353338|gb|EEZ02432.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294442130|gb|EFG10948.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1322

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+  +      + +  Y  L   NG+EAL++  Q   D+II DI +  + G+E+
Sbjct: 1077 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1135

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K++ +   IPVI +TA           + G +AYI KP S+      +   +
Sbjct: 1136 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1191


>gi|323342046|ref|ZP_08082279.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464471|gb|EFY09664.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 222

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + + +IV+D E   ++ ++  + +G +  +  +G EA+E+ + +  DV+++DI +  + G
Sbjct: 1   MVRFLIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDYDVVVLDIMMPNLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               ++IK+   ++++P+I ++A   + D+    + G + Y++KP S    M  IK    
Sbjct: 61  FTACREIKK---IKDVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARIKAVSE 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
 gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
          Length = 230

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVETYLSKEGFQITIASDGEEGVLAFLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 241

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      +  E      +++PD++++D+ +    GL 
Sbjct: 5   KILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARELQRKLARNRPDLMVLDVMMPGEDGLA 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   E+  +PVI +TA     D     + G + Y+ KP +    +  I+  +  
Sbjct: 65  VVRRLRAQGEM--VPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRR 121


>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 958

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K++++VEDN+ N  L + ++E  G+      NG EALE  ++    +IIMD+Q+  + G
Sbjct: 696 SKEILVVEDNKANQVLIKKMLEKVGFKVDVAGNGKEALEKIKEKTYSLIIMDMQMPVMDG 755

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T++I+E     ++PVIA+TA  ++GDE +  + GC+ Y+ KP+     ++ I  ++ 
Sbjct: 756 YTATRKIREKGL--KVPVIALTAHTLRGDEAKSLEAGCDGYLGKPVKQKELIDAIVYFLR 813


>gi|254414545|ref|ZP_05028311.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196178775|gb|EDX73773.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 413

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N++L    +  +GY      +   AL    +  P +I++DI + ++ G E+
Sbjct: 10  VLIVDDQPNNLRLLSTTLTEAGYRVRNAISAKMALMGIEKALPQLILLDIMMPQMDGYEL 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K D   Q IP+I ++A   + D+ +  + G   YI+KP  +   +  +   +
Sbjct: 70  CQHLKSDERTQHIPIIFLSALDNEWDKVKAFEVGGTDYITKPFQVKEVLSRVNNQL 125


>gi|153011989|ref|YP_001373201.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
            49188]
 gi|151563877|gb|ABS17372.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
            49188]
          Length = 1141

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 74/126 (58%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQL 56
            +++++VED+  N+    +++E  G   +  RNG EAL+   + +       D+++MDI +
Sbjct: 1016 RRILVVEDDIRNIYALTNILEPRGAEVIIARNGREALDALSKSQASESTAIDIVLMDIMM 1075

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
              + GL  T++I+E+   +++P+I +TA AM  D++R  + G   Y++KP+ +   +  +
Sbjct: 1076 PVMDGLAATRKIRENPAWKKLPIITLTAKAMPDDQQRCIEAGANDYMAKPLDVDKLLSLV 1135

Query: 117  KKYIGE 122
            + ++ +
Sbjct: 1136 RVWMPK 1141



 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 3   KKVMIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           K+V++V ED+E   ++ RDL    G+  +  R   EA++ AR+  P+ I++D+ L + SG
Sbjct: 747 KRVLLVIEDDETFAEIVRDLSREMGFHCVVARTAEEAVKTAREFSPNAIVLDVGLPDQSG 806

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           L +   +K D   + IPV  ++A             G   Y+ KP+S    ++ + + 
Sbjct: 807 LSVLDGLKNDVRTRHIPVHVISAGDHT---RTAISLGAVGYLRKPVSREQIVDVLARL 861



 Score = 74.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 46/93 (49%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED++ + +   +L+ +         +  E L L R+   D +++D+ L + SG  
Sbjct: 871 RVLIVEDDKNHREAVANLLGSGDVETFTAASAAECLNLLREQTFDCMVLDLSLPDTSGFA 930

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
           + + + +++     PVI  T   +  + E+  +
Sbjct: 931 LLETLSQENIYSFPPVIVYTGRELSAENEQKLR 963


>gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
          Length = 248

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + IV+D++   ++   ++E  G+  +   +G+ A+E+    KPD+I++D+ L  + G
Sbjct: 9   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDG 68

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            E+ ++I+       +P+I +TA +   D     + G + Y+ KP  ++  +  I+ 
Sbjct: 69  TEVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRA 122


>gi|241888541|ref|ZP_04775849.1| response regulator SaeR [Gemella haemolysans ATCC 10379]
 gi|241864808|gb|EER69182.1| response regulator SaeR [Gemella haemolysans ATCC 10379]
          Length = 229

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K+++V+D     ++ +  +E  GY      +G EALE  +++K  +II DI +  + 
Sbjct: 1   MMNKILLVDDEIEITEINKRYLEQGGYDIDIANDGKEALEKYKRNKYSLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  +++     Q  P + +TA   + D+      G + YI KP S    +  ++  +
Sbjct: 61  GYDLISEVQYLDTEQ--PFLFITAKTTEPDKIYALSMGADDYIVKPFSPRELVLRVRNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 236

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED E      +  ++  GY+  +  +G EAL L    + D+II+D+ L  + G E
Sbjct: 8   RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  S   ++P++ +TA     D  +  + G + Y++KP  L   +  ++  +  
Sbjct: 68  VAREVRAVS--PQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKR 124


>gi|226314263|ref|YP_002774159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097213|dbj|BAH45655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED+ +  ++ +D +E +GY      +G   L+ A Q + D++I+D+ L  + G
Sbjct: 1   MKHILIIEDDTVIAEVQKDYLEANGYSVDVATSGDRGLQKALQEEYDLLILDLMLPIVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQ+++   ++ IP++ V+A     D+ R    G + +ISKP SL   +  +K ++ 
Sbjct: 61  FEICKQVRK---VKNIPILLVSAKKEDIDKIRGLGLGADDHISKPFSLGELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|298528354|ref|ZP_07015758.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512006|gb|EFI35908.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1029

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL-ARQHKPDVIIMDIQLQEISGLE 63
           V+IV+D   ++++   L+    Y  L    G  ALE+     +PD+I++DI + ++ G E
Sbjct: 13  VLIVDDQPASIEVLGSLL-REDYHVLVAAGGTRALEMVFGNTRPDLILLDIMMPDMDGYE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K D   +  PVI +TA     DEE     G   YI+KP   SI    ++  I
Sbjct: 72  VCRRLKADERTRGTPVIFLTAMDQDEDEELGFSLGAADYITKPFKPSIVRARVRTQI 128


>gi|224539619|ref|ZP_03680158.1| hypothetical protein BACCELL_04527 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518770|gb|EEF87875.1| hypothetical protein BACCELL_04527 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 375

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 61/113 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +      NG +ALE   +  PD++++D+ + ++SG E
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVDKENPDLVLLDVMMPDMSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + + +K + +  +IP+I +TA     D  +  + G   +ISKP +    +  +
Sbjct: 71  VAQHLKANPKTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 123


>gi|153873106|ref|ZP_02001797.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070428|gb|EDN68203.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 743

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           KKV+IV+D+  N      ++E      +   NG +ALEL  +H    +++MD+ + ++ G
Sbjct: 623 KKVLIVDDDVRNTYALATVLEDREMEVVVGNNGNQALELLEKHSDIAIVLMDVMMPKMDG 682

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E   QI+     + +P+IA+TA AMKGD+ +  + G   Y+SKP+     +  ++ ++
Sbjct: 683 YEAIHQIRAQPRYRHLPIIALTAKAMKGDKAKCIEAGANDYLSKPVDTEKLISLMRVWL 741



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++I+ED+     L  +L     +  L    G   L+LA Q+ P  II+D++L +I G 
Sbjct: 355 KSLLIIEDDRQFSNLLMELAREKDFKCLLAEKGETGLQLAEQYHPQAIILDVKLPDIDGW 414

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
            +  +++ + + Q IPV  ++A+            G   Y+ KPIS+       + I++ 
Sbjct: 415 TVIDKLQNNQQTQHIPVHVMSAYDPN---INALDKGAIGYLHKPISMPELGEAFKKIEQL 471

Query: 120 I 120
           I
Sbjct: 472 I 472



 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 51/103 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++++ DNE + +    L+E             E L+   Q + D II+D+ +++ SG+
Sbjct: 477 KNLLVIADNEKHQQKILGLLEDDEVQTTFFVTIAEVLQQLHQTQFDCIILDMDIEQGSGV 536

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
           ++  Q+++ + L + PVI      +  +EE + +   E  + K
Sbjct: 537 KLLGQMQKTNTLCQTPVIIYVERDLTAEEEALLQRCAENLMVK 579


>gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V +VED+    +L R  +E +G+       G   +  + +  P++ ++DI +    
Sbjct: 1   MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI +QI+    +   PVI +TA   + D+      G + YI+KP S    +  IK  +
Sbjct: 61  GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 245

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED+       R+ +E  G   +   +G   L+ A   + DV+++D+ L    GLE+ 
Sbjct: 21  LLVEDDLRLAAFTREYLEGHGVAVVHVTDGRRGLDEALAGRFDVVLLDLMLPGKDGLEVC 80

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           ++++  S   ++PVI +TA   + D     + G + Y++KP S    +  I+  +  A
Sbjct: 81  RELRSRS---DVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRA 135


>gi|70730615|ref|YP_260356.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
            Pf-5]
 gi|68344914|gb|AAY92520.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
            Pf-5]
          Length = 1164

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+      +E  G + +  RNG EA+    +    D+++MD+ + E+ G
Sbjct: 1040 RKILLVDDDVRNIFALTSALEHKGAVVVIGRNGHEAIARLNEVEDIDLVLMDVMMPEMDG 1099

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T QI++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 1100 FEATVQIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1159

Query: 122  E 122
            +
Sbjct: 1160 K 1160



 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED      +  DL    GY  L      E   LA Q  PD I++D++L + SGL +
Sbjct: 774 ILVVEDEANFAHILFDLAHELGYHCLVAHGADEGYSLAAQFIPDAILLDMRLPDHSGLTV 833

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE+++ + IPV  ++      D        G   Y  KP +     +   + 
Sbjct: 834 LQRLKENAQTRHIPVHVIS----VEDRVEAAMHMGAVGYAVKPTTREELKDVFARL 885



 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++VED++L       LI              EAL+L R++  D +++D++L ++ G 
Sbjct: 894 KRVLLVEDDDLQRDSIARLIGDDDIEITAVGLAQEALDLLRENVYDCMVIDLKLPDMLGN 953

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           ++ K++  +      PVI  T   +  DEE 
Sbjct: 954 DLLKRMSTEDICSFPPVIVYTGRNLTRDEEA 984


>gi|323498131|ref|ZP_08103135.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
 gi|323316842|gb|EGA69849.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   G+   +  NG E L L      D+I++D+ + +++G
Sbjct: 1   MPHILLIDDDTELTSLLKEVLSFEGFDVSEANNGEEGLALLTDG-IDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E+ +    PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKRLRENWQT---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|319793620|ref|YP_004155260.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS]
 gi|315596083|gb|ADU37149.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS]
          Length = 1167

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            + +++V+D+  N+      +E  G      RNG EALE   Q  + D+++MD+ + E+ G
Sbjct: 1043 RTILLVDDDVRNIFALTSALEQRGAAVEIGRNGREALEKLDQVREIDLVLMDVMMPEMDG 1102

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            LE T++++ D   +++PVIA+TA AMK D ++    G   Y++KP+ L      ++ ++ 
Sbjct: 1103 LEATRRLRADPRFEKMPVIAITAKAMKDDRDQCLAAGANDYLAKPVDLERLFSLLRVWMP 1162

Query: 122  E 122
            +
Sbjct: 1163 K 1163



 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+++ED      +  DL    GY  L      +  ELA Q  PD I++D++L + +GL
Sbjct: 774 RRVLVIEDEPQFAHILYDLAHELGYRCLVAHGAADGFELATQFVPDAILLDMRLPDSTGL 833

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           ++ +++K+    + IP+  V+  A    +      G   +  KP +    M+ 
Sbjct: 834 DVLQKLKDSPHTRHIPIHVVS--AADNAQAAALHMGAIGFALKPATRDELMKV 884



 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+EL  +    LI       +   +G EALEL R    D ++ D++L ++ G ++
Sbjct: 899 VLLVEDDELQREAVIKLIGDDDIEIVAVGSGEEALELLRTRVFDCMVTDLRLPDMQGSDL 958

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER 93
            K +  +  +   PVI  T   +  DEE 
Sbjct: 959 LKAMAAEEIVSFPPVIVYTGRNLTRDEEA 987


>gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1062

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 71/118 (60%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN LN ++    +  +G       +G EA+E   Q   + ++MD Q+  + G 
Sbjct: 790 ARILLVEDNRLNQEVALHFLRRAGLKVDVAAHGAEAIERLEQGAYEAVLMDCQMPVMDGY 849

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I+  ++  ++P+IA+TA A++GD ER  K G   ++SKPI ++   +T+ ++I
Sbjct: 850 EATRRIRSKAQFAQLPIIAMTANALEGDRERSLKSGMNDHLSKPIDVNHLYQTLGRWI 907



 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQEI 59
           +V++V+DN     +   +  + G++A    +G +ALE   +        ++++D  +  +
Sbjct: 641 RVLVVDDNASARHILSAMFASFGFVAHAVADGRQALEELARGMDGQPYHLMLIDYHMPGL 700

Query: 60  SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            G+E ++++ +  E   +P VI  +        ++ ++ G +AY++KP++ S  ++ +++
Sbjct: 701 DGIETSRRLLQRKESVPLPTVIMASMDERPIVVQQAQEAGIQAYVNKPVTASTLLDAVQR 760

Query: 119 YIG 121
            +G
Sbjct: 761 ALG 763


>gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
 gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
          Length = 1342

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 1006 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1065

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1066 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1120



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 863 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 922

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 923 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 976


>gi|224537550|ref|ZP_03678089.1| hypothetical protein BACCELL_02429 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520863|gb|EEF89968.1| hypothetical protein BACCELL_02429 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1345

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VED++       +L+    Y  L+  +G E   +A    PD+II DI + ++ GLE
Sbjct: 1095 TILLVEDDKEFRHYMFELLSKK-YNVLEAGDGEEGERIATTKFPDLIISDIMMPKVDGLE 1153

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+IK + ++  IPVI +TA +    +    + G + YISKP +L I +  I+K I E
Sbjct: 1154 LCKRIKSNIQVSHIPVILLTARSTDESKLFGYESGADEYISKPFNLDILLLRIQKLINE 1212


>gi|187933189|ref|YP_001885183.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721342|gb|ACD22563.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
          Length = 235

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++VED++    L    +ET  Y      NG  A+  A  + PD++I+D+ L ++
Sbjct: 1   MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+EI K+I+       +P+I V+A +   D+      G + Y++KP S+   +  ++  
Sbjct: 61  DGIEIIKRIR---TWSNVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVS 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895]
 gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895]
          Length = 290

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 57  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 116

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 117 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 173


>gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908]
 gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 241

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++++     IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQNG--SPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|146300865|ref|YP_001195456.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146155283|gb|ABQ06137.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 1344

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++++EDN    K   D +    Y   +  NG E L++ RQ KP + + D+ +  + GLE
Sbjct: 1099 KILVIEDNNELRKYLVDYLSDY-YKVYEAENGSEGLKICRQIKPILCVTDVMMPVMDGLE 1157

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +++K D  +  IPV+ +TA +   D+ +    G + Y+ KP    +    I+  I
Sbjct: 1158 FCRELKNDEFISHIPVVMLTALSENMDKVKGYDTGADGYLVKPFEPLLLKTVIENMI 1214


>gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 232

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+  ++   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 233

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+   +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus
           pseudintermedius ED99]
          Length = 225

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+I+ED +   +      +   Y      +G+  L  A QH  D+I++D+ L E+ G
Sbjct: 1   MKKVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLMLPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+++     ++ P+I +TA     D+      G + YI KP  +   +   +  I 
Sbjct: 61  LEVCKRLRTQ---KDTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|315646640|ref|ZP_07899757.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277966|gb|EFU41287.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 225

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           + KV+I+ED E         ++ +G+  L+T +G EAL + +     D+ ++D+ +  I 
Sbjct: 1   MSKVLILEDEESIRSFIVINLKRNGFDVLETGDGNEALRMLQTTPDIDIALLDVMVPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+E +E   I +I +TA   + D+      G + ++SKP S +  +  ++  +
Sbjct: 61  GFEVCRRIRETNE--RIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
 gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
          Length = 241

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G E +    +   D+II+DI + ++ 
Sbjct: 12  MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 71

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 72  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 128

Query: 121 GEA 123
             +
Sbjct: 129 RRS 131


>gi|226326489|ref|ZP_03802007.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
 gi|225205088|gb|EEG87442.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
          Length = 235

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L  D +++SGY      +G E     +Q   D+I++D+ L    G+ +
Sbjct: 10  ILIVEDEPKLAQLLIDYLQSSGYQTYWLADGAEVCHCVKQQHYDLILLDLMLPVKDGITV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K++++     +IP+I VTA   + D     + G + YI KP S    +  +K  +  
Sbjct: 70  CKELRQ---FSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRR 124


>gi|253991781|ref|YP_003043137.1| DNA-binding transcriptional regulator CpxR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638556|emb|CAR67177.1| transcriptional two-component response regulatory protein cpxr
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783231|emb|CAQ86396.1| transcriptional two-component response regulatory protein cpxr
           [Photorhabdus asymbiotica]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L ++L+E  G   +   +G +AL+L  +   D++++DI +   +G
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGLNVVIAHDGEQALKLLDE-SIDLLLLDIMMPRKNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   K+++      + PVI +TA     D     + G + Y++KP +    +  I+  + 
Sbjct: 60  IATLKELR---LHHQTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILR 116

Query: 122 EA 123
            +
Sbjct: 117 RS 118


>gi|159184699|ref|NP_354304.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325292658|ref|YP_004278522.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|159139988|gb|AAK87089.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325060511|gb|ADY64202.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 123

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 94/123 (76%), Positives = 110/123 (89%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+VMIVEDNELNMKLFRDLIE SGY  +QTRNGMEAL+LAR+H+PD+I+MDIQL E+S
Sbjct: 1   MPKQVMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARKHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +KED EL  IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+  F+E IK Y+
Sbjct: 61  GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIEIIKTYL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|258651192|ref|YP_003200348.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554417|gb|ACV77359.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 252

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED  +   + R  +  +G+     R G E L   R  +P  +++DI L ++ GL++
Sbjct: 18  VVVVEDESVIADVIRRYLTAAGFGVRWCRTGQEGLAAVRTDRPTAVVLDIGLPDMDGLDL 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++E  +    PV+ VTA     D     + G + Y+ KP +    +  ++  +  
Sbjct: 78  CRRLREAGDW--TPVLFVTARDEDVDRILGLELGGDDYLVKPFNPRELVARLRAVLRR 133


>gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074]
 gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074]
 gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D    ++     +    Y      +G  AL LA +  PDVI++D+ L ++ G
Sbjct: 1   MTRVLVVDDEPQIVRALELNLRARQYEVDSAGDGTTALRLAAERHPDVIVLDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ + ++       +PV+ ++A     ++ +    G + Y++KP  +   +  ++  + 
Sbjct: 61  VDVLRGLRS---WSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218441976|ref|YP_002380305.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218174704|gb|ACK73437.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 465

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 67/116 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++D   N+++  +++  +GY   +  N + AL+  +   PD+I++DI++ E+ G ++
Sbjct: 13  ILIIDDQAANLRILSEILTQNGYKVRKAINPLSALKAIQSTPPDLILLDIKMPEMDGYQL 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +QIK D EL EIPVI ++A     ++ R  + G   YI+KP      +  IK  +
Sbjct: 73  CEQIKSDPELSEIPVIFISALDEVFNKVRAFEVGGVDYITKPFQDGEVIARIKNQL 128


>gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter
            bemidjiensis Bem]
 gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache, HAMP,
            PAS, PAC, PAS and HPT domain-containing protein
            [Geobacter bemidjiensis Bem]
          Length = 1229

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISG 61
            +V++VEDN +N ++ R ++E  G      RNG EAL L    Q     ++MD+ +  + G
Sbjct: 888  RVLVVEDNLINQEVARLILEKGGIKVDVARNGAEALSLVHLPQACYRAVLMDVHMPVMDG 947

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            LE T++I+ D  L  +P+IA+TA     +     + G    +SKPI +     T++++IG
Sbjct: 948  LEATRRIRLDPALARLPIIAMTASVFSEERRLCLEAGMNDQVSKPIDVPQLFATLRRWIG 1007


>gi|307943679|ref|ZP_07659023.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
 gi|307773309|gb|EFO32526.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
          Length = 236

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++VED+     +    +E +GY A+   +G+ A+   +    D I++D+ L E+ G
Sbjct: 1   MKSILVVEDDRNISDVICFALEKAGYRAVVAPDGLAAVTTFKGSSFDFIVLDVGLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +QI+  SE   +P++ ++A   + D     + G + Y++KP S    +  +   + 
Sbjct: 61  LEVCRQIRCMSE---VPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVSAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|307324828|ref|ZP_07604034.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306889710|gb|EFN20690.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +L  + +E  G+      +G+  L LAR      I++D+ L   SG +
Sbjct: 2   RILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVMLPGCSGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E  +    P++ +TA   + DE      G + Y++KP S  + +  ++  +  
Sbjct: 62  LCSRLREKGDW--TPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRR 118


>gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 628

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+         ++ +  Y      +G +  E  +    D++++DI+L  + G+ 
Sbjct: 2   RILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPLLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  Q++  +   ++P++ +TA   + D+ +    G + Y+ KP+ ++     I+  +  +
Sbjct: 62  LCHQLRSHNF--QVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRS 119



 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +VMIV+D+   +   + L++  G   +   +  +  +      PD++++DI++  ++G+E
Sbjct: 497 RVMIVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ D   + IPVI VTA   +   E++ + G + Y++KP + S     I   +  
Sbjct: 557 LCQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKR 615



 Score = 36.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 77  IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           IP +  T          + + G  A++ KP+++   +  I+    +
Sbjct: 445 IPTVVFTTQGDISKRVEVVRLGGSAFLEKPVTIERAIAVIRDVFRQ 490


>gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 250

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56
           +V+IVED EL  ++    +E  GY  +  ++G  A+EL R       +   D++++D+ L
Sbjct: 20  RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I+GL+I + ++       IP++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 80  PQINGLDICRLLRHQGN--SIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARC 137

Query: 117 KKYIGE 122
           +  +  
Sbjct: 138 RALLRR 143


>gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 220

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+K  ++I+ED +    L +  +  +GY   Q  +G   L+ A + + ++I++D+ L  I
Sbjct: 1   MMKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G+E+ ++++E   +++ PVI +TA     D+    + G + Y++KP ++   +  I   
Sbjct: 61  NGIEVCRRLRE---IKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINAL 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 224

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED     +     +   GY      +G+ AL  ARQ   D+II+D  L  +SG
Sbjct: 1   MTHILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLPGVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++++   +  ++P+I +TA             G + Y+ KP SL   +  ++ ++ 
Sbjct: 61  LEICRRLRASGD--KVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 230

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I ED           +  SG+      +G + LE A  H  D++I+D+ L +  G
Sbjct: 1   MSRILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGLPDRDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I K+++   E   +P+I +TA     D+    + G + Y++KP   +  +  ++  + 
Sbjct: 61  FQILKELRGQGET--LPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLR 118


>gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 239

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           + +V+D+     L    +   GY  +      E  ++ R + PD+ ++DI L  + G E+
Sbjct: 7   IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPGMDGFEL 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +    E+P+I ++A   + D+    + G + Y+ KP S    +  IK+ +  
Sbjct: 67  CRRIRAE---AEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSR 121


>gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 2740-80]
 gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae NCTC 8457]
 gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae M66-2]
 gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MAK 757]
 gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 2740-80]
 gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae NCTC 8457]
 gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae M66-2]
 gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MAK 757]
          Length = 1331

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|298505397|gb|ADI84120.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 772

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+ ++ K+   L+E+ G+      +G+EAL    +   D+++MD+Q+  + G E 
Sbjct: 548 VLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIGREAFDLVLMDVQMPVMDGFEA 607

Query: 65  TKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            + I+         +P+IA+TA A+ GD E   + G + Y++KP++ S     I ++
Sbjct: 608 MRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRVISRH 664


>gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 234

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D+E  + +     +   +     R+G EAL+  ++  PD++++DI +  I G E+
Sbjct: 6   ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++ ++     +IP+I ++A   + D       G + Y+ KP  +   +  +K ++  
Sbjct: 66  CRRARQ---FTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRR 120


>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1727

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 70/121 (57%), Gaps = 6/121 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN  N K+   L++  GY A    NG+E L+  ++   DV++MD+Q+ ++ GLE
Sbjct: 1440 RILLAEDNVTNQKVATKLLQRLGYRADIAGNGVEVLDALKRQPYDVVLMDVQMPQMDGLE 1499

Query: 64   ITKQIKE------DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             +++I +      D   ++  +IA+TA AM+GD E   + G + Y++KP+      + + 
Sbjct: 1500 ASRRICKEYGEGSDGRQKKPWIIAMTANAMRGDREMCLEAGMDDYVTKPVRREELAQALA 1559

Query: 118  K 118
            K
Sbjct: 1560 K 1560



 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 63/125 (50%), Gaps = 11/125 (8%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K+++IVE++ +N  +    ++  G   L  + G++AL+  +++   D++I+ I L +I  
Sbjct: 1281 KQILIVENHGINQTVITRQVKAWGMKPLVAKTGIDALKCIQENPNIDLVIIGINLPDIDE 1340

Query: 62   LEITKQIK------EDSELQEIPV-IAVTAFAMKGDEERIRK---GGCEAYISKPISLSI 111
            +E+ ++I+        +     PV + +  +A   +  +  +     C  +++KP+  S 
Sbjct: 1341 IELARKIRLLEKDLSRNHPDRQPVHLVLFNYASNTNIVKRIERTNINCAGFVNKPLKQSQ 1400

Query: 112  FMETI 116
            F  T+
Sbjct: 1401 FYNTL 1405


>gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|325579099|ref|ZP_08149055.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159334|gb|EGC71468.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 235

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L  +++  +G+      NG EAL+        ++++D+ +  ++G
Sbjct: 1   MSKILLVDDDIELTDLLAEVLRLTGFEIEVANNGQEALDKLNASH-QLVLLDVMMPVLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+I++   +  IPV+ +TA   + D     + G + Y+ KP +    +  IK  + 
Sbjct: 60  IETLKKIRQ---ISNIPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612]
 gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612]
          Length = 234

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++I +DN+   +L   L+   G+  +Q +NG EA++       D+II+D+ + + SG 
Sbjct: 7   KRILIADDNQDICELVEILLTAEGFEVVQAKNGQEAVDR-TDDSIDLIILDVMMPQKSGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +I+E +    +P++ +TA     D+      G + Y+SKP S +  +  +K  +  
Sbjct: 66  KACSEIREKTR---VPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLRR 122


>gi|296387499|ref|ZP_06876974.1| LadS [Pseudomonas aeruginosa PAb1]
          Length = 431

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VEDN +N  + R ++   GY      NG EALEL  + +PD +++D Q+  + G  
Sbjct: 305 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 364

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + I+      E+PV+A+TA +  GD ER    G   Y++KP+        +  ++
Sbjct: 365 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 421


>gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium
            spiritivorum ATCC 33861]
 gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium
            spiritivorum ATCC 33861]
          Length = 1138

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV+I +D+  N+       E          NG EAL+L  ++   D+++MDI + E+ G
Sbjct: 1019 KKVLIADDDMRNVFALSTAFEAYNMQIEIANNGREALQLLDKYPDFDLVLMDIMMPEMDG 1078

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+E+ +  ++P+IAVTA AMKGD ER  + G   YISKPI L   +  ++ ++
Sbjct: 1079 FEAIEKIRENKKFAQLPIIAVTAKAMKGDRERTIQIGANDYISKPIDLDKLISLMRVWL 1137



 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 5/121 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++I+ED+    ++ +D     G+      NG E LE A Q +PD II+DI L  + G 
Sbjct: 748 KRLLIIEDDVNFSEILKDYAVEHGFDPSVAYNGKEGLETAIQTQPDAIILDIMLPIMDGW 807

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
           E+ K++K D + ++IPV  ++A ++  DE      G   ++ KP++        +TIK  
Sbjct: 808 EVLKKLKNDDKTKDIPVHMMSAASLHKDEP--INKGAIGFLRKPVTEDSLENAFKTIKSL 865

Query: 120 I 120
           I
Sbjct: 866 I 866



 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
           K+V+I+ED+ L     +  +     +  Q  N  EA+E LA +   D II+DI L + SG
Sbjct: 871 KRVLIIEDHTLQSDFIKSSLNERNTVVDQAFNADEAMEILAAKKSYDCIILDINLPDKSG 930

Query: 62  LEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRK 96
           LE+   IK     Q  P+I  TA    +   ERI +
Sbjct: 931 LELLDDIKAIDTYQHTPIIINTAMELSQESTERILR 966


>gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 227

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED     +    L++  G+ A+   +G  AL    ++  D++++D+ L  +SG
Sbjct: 1   MATVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +++++   +  +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCRRLRQ---VSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|212691822|ref|ZP_03299950.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855]
 gi|237708028|ref|ZP_04538509.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|237724821|ref|ZP_04555302.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|265756177|ref|ZP_06090506.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|212665578|gb|EEB26150.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855]
 gi|229437016|gb|EEO47093.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
 gi|229457856|gb|EEO63577.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|263233768|gb|EEZ19377.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1329

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++++VEDN+   +     +  + Y      NG EAL++  + KPD+++ DI + E+ G
Sbjct: 1070 TQRILVVEDNDDLREYLFHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRG 1128

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI----- 116
             E+   IK +     IPVI +TA   + +     + G + Y+ KP ++ I   +I     
Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188

Query: 117  -KKYIGE 122
             +  +  
Sbjct: 1189 NRALLRR 1195


>gi|182435453|ref|YP_001823172.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776090|ref|ZP_08235355.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178463969|dbj|BAG18489.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656423|gb|EGE41269.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D    ++     ++   Y      +G  AL+LA    PDV+++D+ L ++ G
Sbjct: 1   MTRVLVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAARHPDVVLLDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + ++       +P++ ++A     ++      G + Y++KP  +   +  ++  + 
Sbjct: 61  VEVIRGLR---GWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRASVR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 232

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|71737704|ref|YP_273433.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558257|gb|AAZ37468.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 705

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G   L +     PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K       IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|329956909|ref|ZP_08297477.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
 gi|328523666|gb|EGF50758.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
          Length = 1352

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K+++VEDN+   +  R  +    Y      NG  AL + +++ PD+II DI + E+ G 
Sbjct: 1091 QKILVVEDNDELREYLRRTL-AENYHVQVCSNGKSALYIVKEYFPDLIISDIMMPEMRGD 1149

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+ + +K D +   IP+I +TA     +     + G + Y+ KP ++ I   TI   +  
Sbjct: 1150 ELCQIVKNDIDTSHIPIILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLAN 1209

Query: 122  EA 123
             A
Sbjct: 1210 RA 1211


>gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A]
 gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis]
 gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 240

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + IV+D++   ++   ++E  G+  +   +G+ A+E+    KPD+I++D+ L  + G
Sbjct: 1   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            E+ ++I+       +P+I +TA +   D     + G + Y+ KP  ++  +  I+ 
Sbjct: 61  TEVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRA 114


>gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1027

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED+ +N  L   L+   G+       G E +++ ++  P++I MD+Q+  ++G E
Sbjct: 817 RILIVEDHPVNRLLLLTLLSEIGFEVKVAEQGQEGIKIWQEWHPNLIFMDMQMPIMNGYE 876

Query: 64  ITKQIKE-----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T++I+E       +   IP+IA+TA A     E     GC+ +ISKP      +ET+  
Sbjct: 877 ATQKIREFEREFTPDHPHIPIIAITASAFTEQREECLTLGCDDFISKPFQREELLETLSL 936

Query: 119 YIG 121
           Y+G
Sbjct: 937 YLG 939


>gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 252

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           + ++V+D      +    +E   +      NG++AL LAR+  PDV+++D+ L  + G+E
Sbjct: 18  RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGLPGMDGIE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++      +  V+ +TA + + D       G + Y++KP S    +  I+  +  
Sbjct: 78  VCRQLR---TFSDAYVVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 133


>gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta]
          Length = 219

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED++      R  +  +GY      +G EA     ++   ++I+DI L  ++
Sbjct: 1   MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++ +  +   + P++ +TA +   ++ R      + Y++KP  + I ++ ++  +
Sbjct: 61  GHELLREFRAKN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|39996977|ref|NP_952928.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39983865|gb|AAR35255.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505994|gb|ADI84717.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 238

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED     +     +E  GY      +G  ALE     +  +II+D+ L  I G  
Sbjct: 7   HILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVMLPGIDGFT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       +P++ +TA A  GD       G + Y++KP +L+ F+  ++  +  +
Sbjct: 67  VCERVRATD--ARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRRS 124


>gi|330820701|ref|YP_004349563.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
 gi|327372696|gb|AEA64051.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
          Length = 248

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L    +E +        NG E         PD+I++D+ +    GL 
Sbjct: 8   HVLIVDDDRGIRELVGQYLEKNSIRVSLAANGREMRATLEYGAPDLIVLDVMMPGDDGLV 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   + + +PV+ +TA   + D     + G + Y++KP ++      I+  +  A
Sbjct: 68  LCRELRA-GKFRSVPVVMLTARDEETDRIVGLEMGADDYLTKPFAVRELYARIRAVLRRA 126


>gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila
            wadsworthia 3_1_6]
 gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila
            wadsworthia 3_1_6]
          Length = 1084

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 74/120 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +V++ EDN +N ++  +++++SG       +G+EA+E   +   D ++MDIQ+  + GL
Sbjct: 958  ARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVEKLWEGGYDAVLMDIQMPGMDGL 1017

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + T+ ++E +    +P+IA+TA AM GD E+    G + YI+KPI  S+ + T+ ++I  
Sbjct: 1018 KATRILREYARFDNLPIIAMTAHAMNGDREKSLSVGMQDYIAKPIEPSVLLSTLARWIHR 1077



 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           +++IV+DNEL+  +   ++       +   +  EA+ L R          V ++D  +  
Sbjct: 813 RILIVDDNELSRNILSGMLREFQLDPVSAASVGEAVRLCRDAAREGRPYRVALVDWLMPG 872

Query: 59  ISGLEITKQIKEDSELQEIPVI--AVTAFAMKG---DEERIRKGGCEAYISKPISLSIFM 113
           ++G +  + I     L + PVI    T              +       I+KP++ S  +
Sbjct: 873 MNGKDTAQAICA--ALPKRPVILFMATIHDRPDVLAHIREGKDIPMR-LITKPVTPSSLI 929

Query: 114 ETI 116
             +
Sbjct: 930 SAL 932


>gi|298480391|ref|ZP_06998589.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298273672|gb|EFI15235.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1511

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1296

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351


>gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
 gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D    + +  D+ E  GY  L+  NG +AL+  + +  D+II+D+ + ++ 
Sbjct: 1   MQESILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLKTN-VDLIILDVMMPQMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K I+E       P++ ++A   + D+ +    G + YI+KP  +   +  ++ ++
Sbjct: 60  GFDLCKVIREQI---YCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 209

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 14  NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73
             +L    ++  GY   +  NG EAL+    +  D +++DI + E+ GL + K+I++   
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVCKEIRK--- 57

Query: 74  LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 58  TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106


>gi|225857948|ref|YP_002739458.1| response regulator SaeR [Streptococcus pneumoniae 70585]
 gi|225720881|gb|ACO16735.1| response regulator SaeR [Streptococcus pneumoniae 70585]
          Length = 232

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALEL ++   D+II D+ +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++     L E P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYLLPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|254415908|ref|ZP_05029665.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177335|gb|EDX72342.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 366

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 62/117 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+     +    +   GY      +G EAL L    +PDVI++D+ + +++G+E+
Sbjct: 10  ILIVDDDPNAFDVIEAHLYREGYDLFYASSGEEALNLLDSIEPDVILLDVMMPKLNGIEV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + IK DS  + +PVI VTA   K D  R    G + +I+KP+S       ++  + 
Sbjct: 70  CRTIKSDSHWKHVPVIIVTALNSKEDLARSLNAGADDFITKPVSGIELRARVRSMLR 126


>gi|117618843|ref|YP_855862.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560250|gb|ABK37198.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 242

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I ED      +    ++  G   L   +G EAL + +  KPD++++D+Q+ ++ G ++
Sbjct: 16  VLIAEDEAEIADILAAYLQRHGLRTLHAADGREALAMHQTCKPDLLLLDVQMPQLDGWQV 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I+      ++PVI +TA     D+    + G + Y+ KP + +  +  ++  +  +
Sbjct: 76  LSEIRARG---DMPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRS 131


>gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis]
 gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104]
 gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68]
 gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium]
 gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842]
 gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi]
 gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi]
 gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi]
 gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245]
 gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium]
 gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis]
 gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104]
 gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium]
 gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68]
          Length = 219

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED++      R  +  +GY      +G EA     ++   ++I+DI L  ++
Sbjct: 1   MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++ +  +   + P++ +TA +   ++ R      + Y++KP  + I ++ ++  +
Sbjct: 61  GHELLREFRAKN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|85710035|ref|ZP_01041100.1| DNA-binding response regulator [Erythrobacter sp. NAP1]
 gi|85688745|gb|EAQ28749.1| DNA-binding response regulator [Erythrobacter sp. NAP1]
          Length = 264

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +   + +   G+   + ++G  A     +  PD++++DI +    GL +
Sbjct: 25  ILLVDDEATLREPLAEYLAGQGFCVTEAQSGAAARSALTEVSPDIVLLDIMMPGEDGLSL 84

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +    E + +PVI +TA     D     + G + YI KP      +  I+  +  
Sbjct: 85  CRHL---VETRGLPVIFLTARGEATDRIVGLELGADDYIVKPFEPRELVARIRSVLRR 139


>gi|47570808|ref|ZP_00241364.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|47552525|gb|EAL11020.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 162

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+  ++   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED           +   G+ A++   G EAL L    KP+VI++DI L +I 
Sbjct: 1   MGAKILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIMLPDID 60

Query: 61  GLEITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G EI K++ ++  E+    +I VTA     D+ R  + G + YI KP +    +  IK  
Sbjct: 61  GFEICKRVSRQHPEIS---IIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAV 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|320354561|ref|YP_004195900.1| Fis family two component sigma54 specific transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123063|gb|ADW18609.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfobulbus propionicus DSM 2032]
          Length = 460

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D     +  + L+E  GY      +G  ALE A +   D++I DI++  +SG
Sbjct: 3   MASILVVDDELSMREFLKILLEKEGYQVATAADGQAALERAEKTAFDLVITDIRMPGMSG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           L++  ++K+     +I VI +TAFA   D     K G   YI+KP ++      I+  +
Sbjct: 63  LDLLARLKQLQ--ADIGVIMITAFASPDDAVTAMKSGAFDYITKPFNVDEIKTVIRAVL 119


>gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5]
 gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5]
          Length = 230

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED+    ++    +   G+  +   +G E + L +Q   D++++DI L +++G
Sbjct: 1   MQRILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIMLPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K I+E S    IPV+ ++A     D+      G + YI+KP S+      +K  I 
Sbjct: 61  MDFLKIIREKS---NIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IVED E   +L    +E  GY   + +NG++ LE   +   D++++DI +  I+
Sbjct: 1   MNQSILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++      +PVI +TA +   D+      G   Y++KP  +   +  ++  +
Sbjct: 61  GIELLRRIRKHD--ANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAAL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|299145146|ref|ZP_07038214.1| putative two-component system sensor histidine kinase/response
            regulator hybrid [Bacteroides sp. 3_1_23]
 gi|298515637|gb|EFI39518.1| putative two-component system sensor histidine kinase/response
            regulator hybrid [Bacteroides sp. 3_1_23]
          Length = 1317

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVED +    L +D++    Y+  + ++G+EAL+    + PD+II DI +  + GL +
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++K D +   IP+I ++A A   D+      G +AYI KP      + TI+  +  
Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186


>gi|295085864|emb|CBK67387.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1317

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVED +    L +D++    Y+  + ++G+EAL+    + PD+II DI +  + GL +
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++K D +   IP+I ++A A   D+      G +AYI KP      + TI+  +  
Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186


>gi|293373563|ref|ZP_06619914.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292631461|gb|EFF50088.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1317

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVED +    L +D++    Y+  + ++G+EAL+    + PD+II DI +  + GL +
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++K D +   IP+I ++A A   D+      G +AYI KP      + TI+  +  
Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186


>gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 246

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+++ED+    +     +   G+  L   +G++   LA   KPDV+++DI L ++SGLE
Sbjct: 7   TVLLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAKPDVVLLDIMLPKLSGLE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+ +S    +P++ +TA   + D  R  +GG + YI KP S    +  I+  +  
Sbjct: 67  VCELIRRESV---VPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRR 122


>gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 230

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK++I+ED +   +     +E  GY      NG   LE A     D+I++D+ L E+ G
Sbjct: 3   SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLMLPELDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++++   ++ P+I +TA     D       G + YI+KP ++   +  ++ +  
Sbjct: 63  FEVARRLRKE---KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 233

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 233

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|209964315|ref|YP_002297230.1| transcriptional regulatory protein YycF [Rhodospirillum centenum
           SW]
 gi|209957781|gb|ACI98417.1| transcriptional regulatory protein YycF [Rhodospirillum centenum
           SW]
          Length = 141

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 61/121 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++ +D    +     +++ +G+       G   L    +  PD++++D  + E  G 
Sbjct: 14  RSILVADDEPSIVLSLEFILKKAGFRVRVVTTGGAVLPAMTEETPDLVLLDAMMPERDGY 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+ +     IPVI +TA + + + ++    G   Y++KP S    +ET+++++  
Sbjct: 74  DVCQEIRSNPAWSAIPVIMLTARSREVERQKGLALGASDYVTKPFSTRELVETVRRHLDA 133

Query: 123 A 123
           A
Sbjct: 134 A 134


>gi|160884891|ref|ZP_02065894.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483]
 gi|156109926|gb|EDO11671.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483]
          Length = 1317

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVED +    L +D++    Y+  + ++G+EAL+    + PD+II DI +  + GL +
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++K D +   IP+I ++A A   D+      G +AYI KP      + TI+  +  
Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186


>gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++++D+     L  D +++ G+      NG + L+ A      ++++DI L  ISG
Sbjct: 1   MKQILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNYSIVVLDIMLPGISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++++       IPV+ +TA     D     + G + Y+ KP +    +  I+  + 
Sbjct: 61  LDVLRRLR---PQSRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|303327105|ref|ZP_07357547.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302863093|gb|EFL86025.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 696

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++ EDN +N ++ R+L+   G       NG  AL+L  + + D ++MDIQ+ E+ GL
Sbjct: 565 KRVLLAEDNAINQEIVRELLCRLGVDCAVAENGRRALDLISRERYDCVLMDIQMPEMDGL 624

Query: 63  EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I+     +  IPVIA+TA A   D  R   GG + +ISKP+      E +  ++
Sbjct: 625 EATRRIRAMPGAVSRIPVIAMTAGATPEDVRRSLAGGLDDHISKPLDPGELREKLNHWL 683


>gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
 gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           KV++V+D     KL +D +   GYI L+  +G +AL++  + K   ++I+D+ + ++ G 
Sbjct: 15  KVLMVDDESRMRKLVKDFLTREGYIVLEAGDGEQALDIFMEDKNISLVILDVMMPKMDGW 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  K+I++     ++PVI +TA A + DE +    G + YI+KP S  I +  +   +  
Sbjct: 75  ETLKEIRK---FSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRR 131


>gi|158339429|ref|YP_001520606.1| signal transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309670|gb|ABW31287.1| signal transduction histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 421

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+I++DN  N+ +    +E  G   L +R+G   L+ A   KP++I++D+ + +I G E
Sbjct: 11  TVLIIDDNPNNLGVALSALEGFGATVLVSRSGESGLQRAAFAKPNIILLDVLMPDIDGYE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K + + + IPVI +TA     D+ +  + G   YI+KPI +   +  +K ++
Sbjct: 71  TCRRLKANPQTEPIPVIFMTALTSNNDKVKGLEVGAVDYITKPIYVDELLARVKVHL 127


>gi|298206949|ref|YP_003715128.1| transcriptional regulatory protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849583|gb|EAP87451.1| transcriptional regulatory protein [Croceibacter atlanticus
           HTCC2559]
          Length = 226

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D    +++    + + GY  +   +G EA++LA++ KP +II+D+ + E+ G+E
Sbjct: 7   TILLVDDEPDILEIVGYNLSSEGYNVITASDGKEAVKLAKKRKPQLIILDVMMPEMDGVE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +QI++  +L  I +   TA             G + YI+KPI   + +  +   +  
Sbjct: 67  ACEQIRKIPDLDTI-ITFFTARGEDYSMLAGFDAGADDYITKPIKPKVLVSKVNALLRR 124


>gi|294138950|ref|YP_003554928.1| chemotaxis protein CheY [Shewanella violacea DSS12]
 gi|293325419|dbj|BAJ00150.1| chemotaxis protein CheY [Shewanella violacea DSS12]
          Length = 120

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 66/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++ V+D+    ++    ++T+G+   +  NG EAL++A+Q + D++I D+ +  + G
Sbjct: 1   MKKILAVDDSASMRQMVCFTLKTAGFDVTEACNGDEALKVAQQGEYDLVISDVNMPIMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++     +  P++ +T  +    ++  R  G   +I KP +    + T++K +G
Sbjct: 61  LTLIRNLRTLPNYKFTPLLMLTTESGTEKKQEGRSAGATGWIVKPFNPDQLLATVRKVLG 120


>gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 237

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ ED+          +   GY  +   +G+EAL  A +  PD++++D+ +  I GL++ 
Sbjct: 2   LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVMMPGIDGLQVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++ + +    P++ +TA     D       G + Y+ KP  +      ++  +  
Sbjct: 62  RVLRAEGD--RTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116


>gi|237715465|ref|ZP_04545946.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229444174|gb|EEO49965.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1329

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+  +      + +  Y  L   NG+EAL++  Q   D+II DI +  + G+E+
Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K++ +   IPVI +TA           + G +AYI KP S+      +   +
Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1198


>gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
 gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
          Length = 242

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 226

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++++D+   + L RD +E  GY  L   NG+E L++  +  PD+II D+ + E+ G  
Sbjct: 23  TLLLIDDDPNLILLVRDYLEFRGYDMLTAANGVEGLQILEETTPDLIICDVMMPEMDGYT 82

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             + ++++S++  IPVI ++A     D       G + Y+ KP      +  ++  + +A
Sbjct: 83  FIQNVRQNSQISWIPVIFLSAKGQTCDRIEGLNQGADVYLVKPFEPEELVAQVESSLNQA 142


>gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 301

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+  ++ +    ++ +G  AL    G +AL +A +  PD+I+MD  +  + G E 
Sbjct: 10  ILVVDDSPDSLGMIHQALDQAGLTALIALEGQQALNIAEKMTPDLILMDAIMPNLDGFET 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K+   L  +PVI +T      D  R  + G   YI+KP+  +  +  I+ ++  A
Sbjct: 70  CRRLKQHPNLACVPVIFMTGLTESEDVVRGLEAGGVDYITKPVRPNELIARIRVHLNNA 128


>gi|88797997|ref|ZP_01113584.1| two-component transcriptional regulator, LuxR family protein
           [Reinekea sp. MED297]
 gi|88779194|gb|EAR10382.1| two-component transcriptional regulator, LuxR family protein
           [Reinekea sp. MED297]
          Length = 303

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 63/118 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+   +    D +ET+G   L    G +AL +A++ KPDVI++D  +  + G E  
Sbjct: 9   LVVDDSPEALGFIHDALETAGMEVLVALEGKQALSIAQKMKPDVILLDAMMPVMDGFETC 68

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +K+ + L + PVI +T  +   D  R  + G   Y++KP+     +  +K ++  A
Sbjct: 69  RALKKLAGLADTPVIFMTGLSASEDIVRGLEAGGVDYLTKPVKPDELIARLKVHLSNA 126


>gi|75760000|ref|ZP_00740067.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492519|gb|EAO55668.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 117

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +V++V+D     +L    ++  GY   +  NG EAL+       D +++DI + E+
Sbjct: 1   MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + K+I++     ++P+I +TA   + +     + G + YI KP S    +  ++  
Sbjct: 61  DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAV 117


>gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++IVED+     L    +   GY      +G+  + +  Q   D +I+D+ L  I G
Sbjct: 4   MKRILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGWDALILDLMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L+I +  +  S  +  P+I ++A + +       + G + Y++KP S+      +K    
Sbjct: 64  LDICR--RARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++IVED+    +L +D +E +G+       G+  L   ++ + D++I+DI L  I G
Sbjct: 1   MKRILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+++   ++++IP++ V+A   + D+ R    G + YI+KP S    +  +  +I 
Sbjct: 61  FEILKRVR---DVKDIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHIS 117

Query: 122 E 122
           +
Sbjct: 118 K 118


>gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
 gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 68/121 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D E  ++L    +   GY  + T + ++ L++ +Q KPD++++D  L ++SG
Sbjct: 1   MDRILIIDDEEHILELLDFNLSLEGYEVITTMSSLDGLDIIKQDKPDLVLLDWMLPKMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+   I+ D +  +I VI +TA  M+ D+      G + Y++KP S+      +K  + 
Sbjct: 61  IELLNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNILK 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 225

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ D     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRADGHA--VPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 229

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D++  ++L    I   GY  L   +G EAL     +   +++I+D+ + E+ G+
Sbjct: 2   KILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDGM 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ KQI++DS   +IP++ ++A     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  EVIKQIRKDS---DIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118


>gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +M+ ED+ +N ++   ++   G+      NG +A+ L  + K D I+MD+Q+  + G+E 
Sbjct: 768 IMVAEDSPVNQRVISHVLHKMGHSFTIVENGQDAVTLWERRKFDAILMDVQMPVMDGIEA 827

Query: 65  TKQIKEDSELQE--IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T++I+E     E  +P+IA+TA AM+ D ER    G   Y+SKP+   +  E + K+
Sbjct: 828 TRRIRELDAHCENPVPIIALTAHAMQSDRERCLDAGMNDYLSKPLDPGMLAEKLAKW 884



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 16/122 (13%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59
           V++V+D+  N  + R+L+     +  + ++G EAL + ++H        +++ D+Q+  I
Sbjct: 623 VLVVDDHATNRAILRELLAGWKALVEEAKDGFEALTILKEHEAQGNPIRLLLSDLQMPGI 682

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFME 114
            GL + +++ E       P   + + +         +GG      + ++ KP   S  ++
Sbjct: 683 DGLALAQRV-EKLCGSHPPAFILISSSQIE-----LEGGIAPSIVKDFLLKPFDPSHVLD 736

Query: 115 TI 116
            +
Sbjct: 737 CV 738


>gi|284035960|ref|YP_003385890.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirosoma linguale DSM 74]
 gi|283815253|gb|ADB37091.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirosoma linguale DSM 74]
          Length = 365

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 1/124 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED     +   +L+   G+      NG E +  A   +PD+I+ DI + E+ 
Sbjct: 1   MTTQILLVEDEAQIRENVAELLTLHGFQVETAVNGREGISQALLQQPDLILCDIMMPEVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++   ++ +     IP I +TA     D  R    G + Y++KP +    +  I+  +
Sbjct: 61  GYQVLDVVRNNRSTANIPFIFLTAKTEPADLRRGMVMGADDYLTKPFTFQSLLSAIESRL 120

Query: 121 -GEA 123
             EA
Sbjct: 121 QREA 124


>gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 242

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+IVED+    +L R  +   GY      +G   L    +   D +++D+ L  + GL
Sbjct: 5   KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHWDALVLDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++ +  +     P+I ++A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICRRARAMARY--TPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|189465215|ref|ZP_03014000.1| hypothetical protein BACINT_01560 [Bacteroides intestinalis DSM
            17393]
 gi|189437489|gb|EDV06474.1| hypothetical protein BACINT_01560 [Bacteroides intestinalis DSM
            17393]
          Length = 1348

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+       +L+    Y  L+  +G E   +A    PD+II DI + ++ GLE
Sbjct: 1098 TILLVEDNKEFRHYMFELLSKK-YNVLEAGDGEEGERIATTKFPDLIISDIMMPKVDGLE 1156

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+IK + ++  IPVI +TA +    +    + G + YISKP +L I +  I+K I E
Sbjct: 1157 LCKRIKSNIQVSHIPVILLTARSTDESKLFGYESGADEYISKPFNLDILLLRIQKLINE 1215


>gi|187779726|ref|ZP_02996199.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
 gi|187773351|gb|EDU37153.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
          Length = 234

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +   +     ++  G    + ++G++AL L       +IIMDI + ++ G++
Sbjct: 9   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+E+   + IP+I ++A +   D+      G + Y++KP ++   +  +K  +  
Sbjct: 69  ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 124


>gi|221069624|ref|ZP_03545729.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714647|gb|EED70015.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 249

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      +    +E  G      ++G EAL+  RQ +PD++++DI L ++ G+++
Sbjct: 22  VLVVEDEPAIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVDGVDV 81

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I+ DS   ++PVI VTA A   D+    + G + Y+ KP +    +  ++  +  
Sbjct: 82  LRMIRNDS---DVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRR 136


>gi|75906349|ref|YP_320645.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75700074|gb|ABA19750.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 470

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   G+   +  NG  AL   +   PDVI++D+ + E+ G ++
Sbjct: 13  ILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQMLLPDVILLDVNMPEMDGYQV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K+D    +IPVI ++A     D+ +    G   YI+KP   +  +  I+  I
Sbjct: 73  CQQLKDDEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQI 128


>gi|117918935|ref|YP_868127.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117611267|gb|ABK46721.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1686

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 67/116 (57%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN+LN +L  +L+  +G       +G+EA+E   Q   D ++MD Q+  + G E 
Sbjct: 1346 VLLVEDNQLNQELAVELLRQAGINVTVANHGLEAIERVEQQYFDCVLMDCQMPVLDGYEA 1405

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+E  +   +P++A+TA AM GD E+    G    I+KP+ +      + ++I
Sbjct: 1406 TRRIRELPQFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMARWI 1461


>gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 225

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 71/120 (59%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K++IV+D     KL +D +E  G+  L+  +G+EA+++   +K   ++I+D+ + ++ G 
Sbjct: 5   KILIVDDESRMRKLVKDFLERDGFTVLEAGDGLEAMDVFYDNKDIALLILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +++++   + ++P+I +TA A + DE +    G + YI+KP S  I +  ++  +  
Sbjct: 65  QVCREVRQ---VSQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRR 121


>gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 240

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 74  VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRR 129


>gi|307152914|ref|YP_003888298.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306983142|gb|ADN15023.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 484

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+K+ R ++E  GY      +G + LE   + +P +I++D+ + ++ GL++
Sbjct: 12  ILVVDDVPSNLKVLRGILEPIGYELTFATSGKQTLERVERVRPALILLDLMMPDMDGLQV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +  +   Q+IP+I +TA   +       + G   YI+KP + +  +  IK ++
Sbjct: 72  CQALYSNPMYQDIPIIFLTASQEEEHLTYAFEQGAVDYINKPFNKAELLARIKTHL 127


>gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 233

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+   +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 888

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDNELN ++  +L+   G       NG  ALE+  Q   D+I+MD+Q+  + GL 
Sbjct: 547 RILLAEDNELNQQVALELLRAVGADVSIAGNGAIALEMVAQTHYDLILMDMQMPVMDGLA 606

Query: 64  ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ ++E  +  Q  P++A+TA  M GD ER    G + +I+KPI        ++++
Sbjct: 607 ATRLLREREDVGQHTPILAMTANVMAGDRERCLAAGMDDHIAKPIDPDRLYAALQRW 663



 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQ 57
           +++++ +D+     +   L+ +  ++     +G +AL++           +V+++D  + 
Sbjct: 401 RRMLVADDSASARTIMAALLRSMSFVVDTAESGQQALQMIAGAEQEGQPYEVVLLDWHMP 460

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + G+E  +++      Q    + VT +  +    +    G +  + KP+  S+  +T+
Sbjct: 461 GLDGIETGRRLIARGMGQRPYRVMVTGYGREEVFRQADTAGFDRVLVKPVCASVLFDTV 519


>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1523

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N K+    +++ GY+A    NG E L+L ++ + D+I+MD Q+  + G E
Sbjct: 1251 RILLAEDNPVNQKVALRQLQSLGYMADVVANGQEVLDLLQRVQYDLILMDCQMPVMDGYE 1310

Query: 64   ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T+++++          VIA+TA AM+ D ER  + G + Y+SKP+        +  +
Sbjct: 1311 ATRRLRQQERGSGHRTVVIAITANAMQEDRERCLQAGMDDYLSKPVLKEDLERVLNHW 1368



 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 5/126 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57
            K++++V+DN  N K+ R      G +  +  N  +AL+  RQ         + ++D+Q+ 
Sbjct: 1097 KRLLVVDDNATNRKIVRYQATAWGMVVEEAENAYQALDKLRQAAREGIPFPLAVLDMQMP 1156

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E+ G  + + IK D EL +  ++ +T+  +     R  + G  AY++KP+  +   E + 
Sbjct: 1157 EVDGETLGRWIKADPELSQTQLVMMTSLGLGEHSRRAAEIGFAAYLTKPVKQTRLQEALV 1216

Query: 118  KYIGEA 123
              +G++
Sbjct: 1217 MALGKS 1222


>gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 975

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN       R ++ +S +      +G  ALE AR   PD+I+ D+ +  + G  
Sbjct: 613 RLLLADDNADMRDYVRRVLSSS-FEVEAVPDGQAALEAARACVPDLILTDVMMPRLDGFG 671

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + ++++ D   + +PV+ ++A A +       + G + Y+ KP S    +  +
Sbjct: 672 LLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARV 724


>gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 245

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D     +L    +  SG+      +G EA+++  +  PD+I++D+ L +I G 
Sbjct: 10  ATIVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTDPDLIVLDVMLPDIDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++I++     E PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 70  TVTRRIRQQGI--EAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 127


>gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++++D      L   ++    Y+     NG  AL+L     PD++++D+ L + SG
Sbjct: 1   MKKILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+I   +  + +PVI ++A     D+    + G E Y++KP      +  IK  + 
Sbjct: 61  YDLCKEI---TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 233

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
 gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
          Length = 225

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D+    +L R ++E SG+   +  +G  A+ L      D+II+D+ + ++ G E+
Sbjct: 4   ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVMMPKMDGFEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++      +IP++ +TA     D+ +    G + Y+ KP         +K  +  
Sbjct: 64  SEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKR 118


>gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI]
 gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 233

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+   +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|71906612|ref|YP_284199.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846233|gb|AAZ45729.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1064

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 69/120 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED+E+N ++  +++   G +     +G++A+E A Q   ++I+MDIQ+  + GLE
Sbjct: 846 RVLVVEDSEINREIVAEILMEVGIVVDTAEDGVKAVEKAAQTHYNLILMDIQMPNMDGLE 905

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            T+QI+  +    IP+IA+TA A        R  G   +++KP+  +     + +++  A
Sbjct: 906 ATRQIRRHAVNPNIPIIALTANAFDSTRRETRLAGMNDFVTKPMEPATLYTALLRWLPAA 965


>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
 gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
          Length = 717

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEISG 61
           ++++ EDN +N KL   ++  +GY      NG +A++L   R    D+I+MDIQ+ E+ G
Sbjct: 594 RILLAEDNPVNQKLAVLILNKAGYQVEVASNGRKAVDLFTRRPENFDLILMDIQMPEMDG 653

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L  TK+++       +P++A+TA AMKGD E   K G   YI+KP+   I  E I+K++ 
Sbjct: 654 LAATKELRSRG-FNTVPIVAMTANAMKGDREICLKAGMNDYITKPVKREIIFEIIEKWLH 712

Query: 122 E 122
            
Sbjct: 713 R 713



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 68/124 (54%), Gaps = 7/124 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNG---MEALELARQHK--PDVIIMDIQLQ 57
           K+V++V+DN  N+ + R ++  +    +   +       L+ A ++    D+II+DIQ+ 
Sbjct: 442 KRVLVVDDNLTNLSILRHILMAAELHVVAIHDSSNVRSVLQQAIENHALFDLIILDIQMP 501

Query: 58  EISGLEITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
              G  +   I+ E +E   IP++A T+ + + + +R ++ G +A+++KP    I  +TI
Sbjct: 502 APDGYALAHIIRHELAETATIPLLAYTS-STERNAQRCKEAGFDAFLTKPTRREILFKTI 560

Query: 117 KKYI 120
           +K +
Sbjct: 561 EKLL 564


>gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 233

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+   +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V+I+ED++   ++    +   G    +  +G E L    +   D++++D+ L   SGL
Sbjct: 9   RSVLIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVLPGRSGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+    +   PVI VTA A   D     + G + Y++KP         I+     
Sbjct: 69  EVCREIR---RVSTTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARR 125


>gi|288940785|ref|YP_003443025.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896157|gb|ADC61993.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1053

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 69/120 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ EDN +N ++  DL++  G       NG EA+ELA   +  +I+MD+Q+  + GL
Sbjct: 699 ARLILAEDNAVNREVALDLLQAVGLQVDTAENGREAVELAMTGRHALILMDVQMPVMDGL 758

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E T+ I+  S  ++ P++A+TA A + D     + G   ++ KP+S     ET+ +++ +
Sbjct: 759 EATRLIRALSGWRDKPILAMTANAFQEDRRHCLEAGMNDFVPKPVSPRDLFETLLRWLPK 818


>gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
 gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IVED      L    ++   Y   +     EALE   ++  D+ I+DI L ++S
Sbjct: 1   MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I++       P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLTICQKIRDKYNY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|197336844|ref|YP_002158691.1| transcriptional regulator [Vibrio fischeri MJ11]
 gi|197314096|gb|ACH63545.1| transcriptional regulator [Vibrio fischeri MJ11]
          Length = 766

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 72/117 (61%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN  N  + ++ +  +GY     +NG EA+  A   + D+I MDI + E+ G+  
Sbjct: 501 ILVVEDNHANQIVIKNTLNYAGYSIDIAQNGKEAITKAINTQYDLIFMDISMPEMDGMTA 560

Query: 65  TKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           TK+I+  S+  Q +P+IA+TA A+ GD+ER  + G   Y+SKP S S  +E + KY+
Sbjct: 561 TKKIRSLSDTHQNMPIIALTAHALSGDKERFIEAGMTDYLSKPFSRSNLLECLAKYL 617


>gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1959

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 69/118 (58%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +V++ EDN +N ++  +L++ +G       +G EA+++ ++    +++MD+Q+ ++ GL
Sbjct: 1626 ARVLLAEDNAVNREVAVELLQAAGMQVDLAVDGQEAIDMCQRTAYALVLMDMQMPQVDGL 1685

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T++I+ D+ L ++P++A+TA A   D       G   +I+KP+   +    +  ++
Sbjct: 1686 EATRRIRADARLADLPILAMTANAFGEDRAACLAAGMNDHIAKPVDPQVLYSHLLHWL 1743


>gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
 gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
          Length = 239

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           + +V+D+     L    +   GY  +      E  ++ R + PD+ ++DI L  + G E+
Sbjct: 7   IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPGMDGFEL 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +    E+P+I ++A   + D+    + G + Y+ KP S    +  IK+ +  
Sbjct: 67  CRRIRAE---AEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSR 121


>gi|317125394|ref|YP_004099506.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589482|gb|ADU48779.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 226

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+    +   D +   G+  +Q  +G  A+     H+PD++++D+ L    G
Sbjct: 1   MSRILVVEDDLTINQTVTDRLRAEGFDVVQAHDGPRAVAAHATHEPDLVVLDVMLPGFDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+     + +PV+ +TA   + D       G + Y++KP  +   +  ++  + 
Sbjct: 61  LEVCRRIQAS---RAVPVLMLTARDDETDLPVGLAVGADDYVTKPFRMRELVARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 232

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 8   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++   E   IP++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 68  LEVARRLR--GEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 125

Query: 122 E 122
            
Sbjct: 126 R 126


>gi|288958710|ref|YP_003449051.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911018|dbj|BAI72507.1| two-component response regulator [Azospirillum sp. B510]
          Length = 135

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/120 (67%), Positives = 104/120 (86%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K V+IVEDNELNMKLF DL+E  GY  LQTR G+EA+ LAR+H+PD+I+MDIQL E+SG
Sbjct: 16  TKTVLIVEDNELNMKLFHDLLEAHGYGTLQTREGVEAMRLAREHRPDLILMDIQLPEVSG 75

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+T+ IK+D EL+ IPV+AVTAFAMKGDEE+IR+GGCE Y++KPIS+  F+ET+KK++G
Sbjct: 76  LEVTRWIKDDPELKSIPVVAVTAFAMKGDEEKIRQGGCEDYVAKPISVVKFLETVKKFLG 135


>gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 231

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED E      +  +E  GY  +  ++G E LEL  + KP +I++D  L    G+ 
Sbjct: 5   KILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEKPTLILLDWMLPVYDGIT 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++   + +IP+I +TA     D       G + Y++KP  +      I+  +  
Sbjct: 65  VLRRIRK---VSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRR 120


>gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 508

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++ EDN +N  L   ++   G+      +G + L   + H  D I+MDI++  + G 
Sbjct: 382 RHVLVFEDNPVNRALMSAMLRRLGHTLDFAADGPDGLNQLQHHVYDAILMDIEMPLMDGY 441

Query: 63  EITKQIKEDSELQEIP---VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E+T+ I++      +P   +IAVTA AMKG  E     G + Y+ KP++ S     I + 
Sbjct: 442 EVTRHIRQHEATHALPRRHIIAVTAHAMKGQRELCLAAGMDDYLPKPVNPSDLAAAIARA 501


>gi|224025799|ref|ZP_03644165.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM
           18228]
 gi|224019035|gb|EEF77033.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM
           18228]
          Length = 903

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++++DN       R +++   Y  ++  NG E L+ A ++ PD II D+ +  + G+E
Sbjct: 655 TILVIDDNLDIRDYVRSVLQDE-YNVIEAANGQEGLQQAMKYVPDAIICDVMMPVMDGME 713

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K + +   IPV+ +TA+A+   + +  + G ++YISKP S  +    ++  I
Sbjct: 714 CCRRLKSEVQTSHIPVMMLTAYAVDEQKIKGYECGADSYISKPFSARLLTVRLRNLI 770


>gi|182680446|ref|YP_001834592.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636329|gb|ACB97103.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 273

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D+     L    +   GY      N  EA    R    D+I++D  +   +G 
Sbjct: 46  AHLLIVDDDRRIRALLARFLADQGYRVTTAGNAEEATASLRNFAFDLIVLDAMMPGENGF 105

Query: 63  EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  +++    +L  +PV+ +TA     D  R  + G + Y+ KP         I   + 
Sbjct: 106 DLLTRLRAQPSDLAHVPVLMLTACTEPEDRVRGFEAGSDDYLGKPYEPRELALRIASILR 165

Query: 122 EA 123
            A
Sbjct: 166 RA 167


>gi|197116776|ref|YP_002137203.1| response regulator [Geobacter bemidjiensis Bem]
 gi|197086136|gb|ACH37407.1| response regulator [Geobacter bemidjiensis Bem]
          Length = 204

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 71/118 (60%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D   N+ +   ++    Y  L   +G EAL    +++PD+I++D+ + E+ GL
Sbjct: 4   KKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEALLALAENRPDLILLDVMMPEMDGL 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ + +K+DS  ++IPVI VTA + + DE R  K G   ++SKP++  I    +  ++
Sbjct: 63  EVCRILKDDSRYRDIPVIFVTALSDEVDESRGFKAGAVDFLSKPVNPVILSHRVAVHL 120


>gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 659

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 73/121 (60%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLI-ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++ ED+ +N ++  +L+ ET G+      +G +ALE+A QH+ D+I+MD+Q+ E+ GL
Sbjct: 530 RILVAEDDWVNQEVALELLRETLGFAVDIAPDGAQALEMALQHRYDLILMDMQMPELDGL 589

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T+ I+E  +  ++P+IA+TA A   D  R    G   +I+KP+        + +++ E
Sbjct: 590 GATQAIREIPDYADVPIIAMTANAFAEDRARCMDAGMNDFIAKPVDPDNLFMIMLRWLKE 649

Query: 123 A 123
           A
Sbjct: 650 A 650


>gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
 gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
          Length = 233

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      + R  +E +    ++  N M+A  +    +PD++++D  L   SG+E+
Sbjct: 6   VLVVEDEVAIRDMLRMALEIADLRCIEADNIMDAHAIIIDRRPDIVLLDWMLPGGSGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K D   +EIPVI +TA   + +  +    G + YI+KP +    +  I+  +  +
Sbjct: 66  LRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRALLRRS 124


>gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I+ED     +L RD  E +G+ A     G E L LA      +I++D+QL  ++
Sbjct: 1   MTTRILIIEDETTIAQLERDYFELNGFFADLCHTGNEGLHLALNEDYSLIVVDLQLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+++   +E+P++ V+A   + D+ R    G + YI+KP S S  +   K ++
Sbjct: 61  GFELCRQIRKN---KEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHL 117


>gi|257468982|ref|ZP_05633076.1| transcriptional regulatory protein [Fusobacterium ulcerans ATCC
           49185]
 gi|317063230|ref|ZP_07927715.1| signal transduction regulator [Fusobacterium ulcerans ATCC 49185]
 gi|313688906|gb|EFS25741.1| signal transduction regulator [Fusobacterium ulcerans ATCC 49185]
          Length = 239

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I++D    ++L +  +E  GY    T  G   + L  +  P++I++D+ L  ++
Sbjct: 1   MGKKILIIDDEIHILELLKLNLEIYGYEVFTTDTGNNVMSLIEKINPNIILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K+I+ +  L +I ++ ++A + + D+    + G + YI+KP SL   +  I  + 
Sbjct: 61  GIDICKKIRNNPLLNKIRILIISAKSEEIDKIVCLEIGADDYITKPFSLREMIARINAFS 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 239

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE 58
           M  K+V+IVED+     L R  +   GY      +G   L L  Q  P D +++D+ L  
Sbjct: 1   MSTKRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GL++ ++ +  +    +P+I ++A   +       + G + Y++KP S+   +  ++ 
Sbjct: 61  VDGLQVCQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRA 118

Query: 119 YIGEA 123
            +  A
Sbjct: 119 LLRRA 123


>gi|17229799|ref|NP_486347.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131399|dbj|BAB74006.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 470

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L   ++   G+   +  NG  AL   +   PDVI++D+ + ++ G ++
Sbjct: 13  ILVVDDTPDNLRLLSAMLTARGFEVRKALNGKMALTACQMLLPDVILLDVSMPDMDGYQV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K D    +IPVI ++A     D+ +    G   YI+KP   +  +  I+  I
Sbjct: 73  CQQLKADEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQI 128


>gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 232

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D++   +     ++  G    Q ++G+EALE   +    ++++D+ +  + G++ 
Sbjct: 7   VLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQT 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E    + IP+I ++A + + D+    + G + Y++KP +    +  +K  +  
Sbjct: 67  TLKIRE---ARNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRR 121


>gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 222

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++EDN    ++ +  +E +GY  L   +G+  L  AR++ PD++I+D+ L +  
Sbjct: 1   MDQRILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGLPDFD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI +++++      +P+I +TA      +  + + G + Y++KP      +  +K  +
Sbjct: 61  GAEIARRLRK---TSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|319654313|ref|ZP_08008401.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
 gi|317394013|gb|EFV74763.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
          Length = 931

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
           K V++V+D+  N+   ++ +   G   L   NGM+ L+L     K D+++MDI +  + G
Sbjct: 812 KTVIVVDDDHRNIYALKNALNKEGMNVLTAENGMQCLDLIMGTEKIDIVLMDIMMPVMDG 871

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  K+++     Q++P+IA+TA AMKGD E+  + G   YISKP+ L   +  ++ ++
Sbjct: 872 YETMKRLRGLDRHQDVPIIALTAKAMKGDREKCMEAGATDYISKPLKLDQLLSVMRVWL 930


>gi|319795485|ref|YP_004157125.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597948|gb|ADU39014.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 340

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ SGY  L   NG +AL+ A Q +PD++++D  +  I G E+
Sbjct: 26  VLIVDDVPDNLAVLHDALDESGYTVLIATNGEQALQRAAQARPDIVLLDAMMPGIDGFEV 85

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121
            +++K D+    IP++ +T            + G   Y++KPI     +  +  ++    
Sbjct: 86  ARRLKADAATAHIPIVFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVLARMNVHLQGAR 145

Query: 122 EA 123
            A
Sbjct: 146 RA 147


>gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|253572186|ref|ZP_04849590.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251838366|gb|EES66453.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1366

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED++   +    L     Y  ++  NG E + +A ++ P +II DI +    G E +
Sbjct: 1116 LIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADKYIPKLIISDIMMPVKDGFECS 1174

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E+     IP+I +TA A   D  +  + G + YI KP +  +  E +K  I +
Sbjct: 1175 REIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQ 1231


>gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
 gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
          Length = 230

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G + +    +   D+II+DI + ++ 
Sbjct: 1   MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 806

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+  N    + L++ SG+     +NG +A+E       D I MDI +  + G++
Sbjct: 686 RILLVEDDPANRFAMQKLLQKSGHHVQTAQNGSQAVEAFAHSHFDCIFMDIHMPVMDGVQ 745

Query: 64  ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+   +     ++P+IA+TA+ + GD E+  + G + Y+ KP+ +      +KK +
Sbjct: 746 ATRKIRSMQDSGIAPKVPIIALTAYTLNGDREKFLESGMDEYLGKPVQMQDIENVLKKLL 805

Query: 121 G 121
           G
Sbjct: 806 G 806


>gi|126659225|ref|ZP_01730363.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126619530|gb|EAZ90261.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 635

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 59/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+DN  N+++    ++ + Y  L  + G  A+  A++  PD+I++D+ +  + G E 
Sbjct: 6   ILVVDDNPNNIQVLFQCLKKADYKVLIAQTGESAINQAKKTLPDLILLDVMMPIMDGFET 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +K   E  +IPVI +T      ++ +    G   YI+KP      +  +K ++
Sbjct: 66  CSSLKSLPETVDIPVIFMTVLNETFNKVKGFSLGAVDYITKPFIQEELLARVKLHL 121


>gi|120612175|ref|YP_971853.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120590639|gb|ABM34079.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 353

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ SGY  L    G  AL  A Q  PDV+++D  +  + G E+
Sbjct: 30  VLIVDDVPDNLAVLHDALDESGYTVLVATGGETALARAAQAMPDVVLLDAMMPGMDGFEV 89

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121
            +++K       IP+I +T        E     G   Y++KPI     +  +  ++    
Sbjct: 90  ARRLKARPATAHIPIIFMTGLTETEHLEAALAAGGVDYVTKPIKPREVLARMNVHLQGAR 149

Query: 122 EA 123
            A
Sbjct: 150 RA 151


>gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D++  ++L R  ++  GY  L   NG E +E+  + K  ++I+DI L    GL+I
Sbjct: 6   ILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILAKQKIHLLILDIMLPGEDGLQI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+E      IP+I V+A +   D+      G + Y++KP +    M  +K  +  +
Sbjct: 66  CRKIRESYI---IPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRS 121


>gi|89901045|ref|YP_523516.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89345782|gb|ABD69985.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 1009

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 72/121 (59%), Gaps = 6/121 (4%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VEDN++N +   +L+   G   ++  NG EAL+  +QH  D ++MD+Q+  + GL+ T
Sbjct: 669 LLVEDNDINREFATELLRGEGIEIIEAVNGQEALDKVQQHDLDAVLMDLQMPVMDGLQAT 728

Query: 66  KQIKEDSELQE------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           ++I+  +   E      +P+IA+TA AM  D ++ R+ G   +ISKP+     M T+ K+
Sbjct: 729 RRIRALANTPEGARFASLPIIAMTALAMPQDAQKSREAGMNDHISKPVDPEHLMATLAKW 788

Query: 120 I 120
           I
Sbjct: 789 I 789



 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEIS 60
           ++++V+DNE + ++    +      A    +G  AL + +    H  D+++MD ++  ++
Sbjct: 519 RMLVVDDNEASCEIMAQTLRYFHVDASTANSGPAALTILKNAAAHPFDLVLMDWRMPGMN 578

Query: 61  GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E+T++I+ +  +   P V+ V+A+  +   +   +   + +++KP+S S  ++T+   
Sbjct: 579 GDEVTRRIRAEPGIAHQPKVVMVSAYGHEDVIKLAEQARVDGFLTKPVSPSTLLDTVLSV 638

Query: 120 IGE 122
           +G 
Sbjct: 639 LGR 641


>gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++   +++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
          Length = 224

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +    +    ++ + +      NG EALE       D+I++DI L +++G E
Sbjct: 2   RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTYDLIVLDIMLPKLNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++E+    E  V+ +TA     D+ +    G + Y+ KP      +  I+  +  
Sbjct: 62  VVKKLRENKN--ETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRR 118


>gi|254447699|ref|ZP_05061165.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
 gi|198263042|gb|EDY87321.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
          Length = 229

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED           ++  G+     + G EA E    H  D I++D+ L + +
Sbjct: 1   MKPQILIVEDEPAIADTLLYALKKEGFNVHWAQLGGEAEEWLSCHSADGIVLDVGLPDTN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+I++++   ++P+I +TA   + D     + G + Y+ KP S    +  IK  +
Sbjct: 61  GFELCKRIRQNNT--QVPIIFLTARKEEVDRIVGLEIGGDDYVVKPFSPRELVARIKAIL 118

Query: 121 GEA 123
             A
Sbjct: 119 RRA 121


>gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 236

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I +D E  ++L    +E    I    +NG++A E+   +  D+ I+DI + +I G
Sbjct: 1   MAKILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFEIIENNDIDLAIIDIMMPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K+I+E  E   IPVI ++A +   D+    + G + YI+KP +    +  +K  + 
Sbjct: 61  YHLVKKIREKYE---IPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|329923332|ref|ZP_08278816.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941424|gb|EGG37716.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 228

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D++  ++L RD +E   +      +  EA  + +QH    +++DI +   +G E
Sbjct: 6   TILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHAIHCMVLDIMMPGQNGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+ +S    +P++ ++A +   D+ R    G + YI K  S    +  +K  +  +
Sbjct: 66  LCRRIRAES---HVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRS 122


>gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 230

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    +    +++  Y       G EALE  +  K D+ I+D+ L  I G EI
Sbjct: 3   ILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVMLPGIDGFEI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+E       PVI +TA     D+      G + YI KP +    +  +K  +  
Sbjct: 63  LKKIRERYTF---PVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRR 117


>gi|269103945|ref|ZP_06156642.1| transcriptional regulatory protein CpxR [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163843|gb|EEZ42339.1| transcriptional regulatory protein CpxR [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 229

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D+     L  D++E  G+   Q  NG + LE       D++++D+ + +++G
Sbjct: 1   MAKVLLVDDDTELTALLHDILEMEGFEVEQANNGEQGLEKINA-SIDLVLLDVMMPKMNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++E       PV+ +TA   + D     + G + Y+ KP S    +  ++  + 
Sbjct: 60  TEMLRRLREK---YSTPVLMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARMRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 66  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123


>gi|262198228|ref|YP_003269437.1| response regulator receiver protein [Haliangium ochraceum DSM
           14365]
 gi|262081575|gb|ACY17544.1| response regulator receiver protein [Haliangium ochraceum DSM
           14365]
          Length = 305

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 68/121 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++ ED++  + L    +E +G+  L+  NG  AL+  R + PD++++D+ + E+ G+
Sbjct: 5   KRILLAEDDDAIVDLVTAALEGAGFARLRAENGARALDFLRIYTPDMLVLDVMMPEMDGI 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  + I+ED  L EIP++ +TA +   ++      G +AY+ KP  L  F   I   +  
Sbjct: 65  EAAQHIREDELLAEIPILMLTALSGVENKIDGLDAGADAYLPKPFDLREFKAQINALLRS 124

Query: 123 A 123
           +
Sbjct: 125 S 125


>gi|254410095|ref|ZP_05023875.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183131|gb|EDX78115.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 372

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED E   +   +L+E   +      +G   L+L  Q++PD+I+ D+ + ++ G
Sbjct: 9   MKKILIIEDEETVRENLMELLEAEDFEVCGAGDGCAGLDLVPQYQPDLILCDVMMPKLDG 68

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +   ++++     IP + +TA   K D  +  + G + YI+KP S+   +  I   +
Sbjct: 69  FGVLNTLRKNPVTATIPFMFLTARTDKTDLRQGMELGADDYITKPFSVDELLNAIASRL 127


>gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 234

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED+       R+ +E  G   +   +G   L+ A   + DV+++D+ L    GLE+ 
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           ++++  S   ++PVI +TA   + D     + G + Y++KP S    +  I+  +  A
Sbjct: 70  RELRSRS---DVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRA 124


>gi|159026609|emb|CAO86541.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 368

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N++L   ++   GY   +  NG  AL   R   PD+I++DI + +++G ++
Sbjct: 10  VLIVDDLPNNVRLLSIMLTEKGYQVRKAINGQMALNTVRSLIPDLILLDINMPDLNGYQV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K D + +EIPVI ++A     D+ +  + G   YISKP      M  I+  +
Sbjct: 70  CEQLKADEKTREIPVIFISALDDVLDKVKAFQVGGVDYISKPFQGEEVMARIENQL 125


>gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 303

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D+   + +  + +E++G   L    G +AL +A++  PDVI++D  +  + G E 
Sbjct: 11  VLIVDDSPDTLGMLNEALESTGMTTLVALEGKQALTIAQKLTPDVILLDAIMPGMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +  L+ IPVI +T  +      +    G   Y++KPI+    +  I  ++
Sbjct: 71  CEKLKANPSLKNIPVIFMTGLSDTDSIVKGFAAGGVDYLTKPINPKELVARINAHL 126


>gi|29349545|ref|NP_813048.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341454|gb|AAO79242.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1310

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
               +++V+DN      F   +       L   +G+EAL+L + + PD+I+ D+ +  ++G
Sbjct: 1055 SYTILVVDDNSDLTDFFSKALSEYFKKVLIASDGVEALQLVKSYTPDIIVSDVMMPRMNG 1114

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E+ K +KED  +  IP+I +TA   K  +    K G + Y++KP  + + ME I+  +
Sbjct: 1115 YELCKGLKEDLAVSHIPIILLTARDDKESQISGYKNGADGYLTKPFEIEMLMELIRNRL 1173


>gi|67925918|ref|ZP_00519199.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
 gi|67852236|gb|EAM47714.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
          Length = 157

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V++VED+    K+   ++  +G+  +   +G++ALE   +   D+I++DI + +++G
Sbjct: 37  MRAVLLVEDSPAQQKMISTILTKNGWQVMIAEDGIQALESINESSLDLIVLDIVMPKMNG 96

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++IK + + Q +P++  ++   + D     K G +AYI+KP      + TI++ + 
Sbjct: 97  YEVCRRIKTNPKTQNVPIVMCSSKGEEFDRYWGMKQGADAYIAKPFEDVELIGTIQQLLR 156


>gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 227

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED          L+   GY      +G  AL        D++++D+ L  + G
Sbjct: 1   MTRVLIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGADIVLLDLMLPGMPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++       +P+I +TA   + D     + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRQLR---LSSHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 224

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+I+ED     +     +   GY    + +G E LELA   +  +I++D+ L  ++
Sbjct: 1   MNHRVLIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVMLPSLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+    +++ P+I +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GMEVCRRIRA---VKQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1265

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 73/121 (60%), Gaps = 3/121 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            KV++VED ++N+   + L++  GY  +   +G +A+E+    + D+++MDI++  + G++
Sbjct: 1143 KVLLVEDEDINVVTVKALLKKHGYAVIVATDGQQAIEVLSGKEIDLVLMDIRMPIMDGVQ 1202

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T  I+        +++P+IA+TA+AM GD E+    G   YI+KP+ +    E IK+ +
Sbjct: 1203 ATLAIRSGKAGQDKKDVPIIAMTAYAMTGDREKFLAAGMNDYIAKPVDIQDLKEVIKRVL 1262

Query: 121  G 121
            G
Sbjct: 1263 G 1263


>gi|261344525|ref|ZP_05972169.1| transcriptional regulatory protein OmpR [Providencia rustigianii
           DSM 4541]
 gi|282567438|gb|EFB72973.1| transcriptional regulatory protein OmpR [Providencia rustigianii
           DSM 4541]
          Length = 239

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++V+D+     L    +   G+      N  +   +  +    +I++D+ L    G
Sbjct: 4   SYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++  +    IP+I VTA   + D     + G + YI KP +    +  I+  + 
Sbjct: 64  LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
 gi|198270906|gb|EDY95176.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
          Length = 1325

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VEDNE  +++  D++    Y      NG E L+ A +  PD+II D+ +  +SG 
Sbjct: 1067 QTILLVEDNEDMLQVLVDMLSPL-YKVKIAMNGQEGLDKALEESPDLIISDVMMPVMSGT 1125

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+  ++K +     IPVI +TA      + +  + G + Y+ KP +  I +  I   + 
Sbjct: 1126 EMCMKLKTNFNSSHIPVILLTALTSDDSKLKGVQCGADDYVEKPFNHKILLGKIANILR 1184


>gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 225

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I +D+    +L    ++T GY      +G EA  L  + +  + ++D+ +    G
Sbjct: 1   MIHILIADDDAHIRELLLYHLQTEGYTVFTAADGEEASALLAEEQVHLAVVDVMMPNKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+      ++PVI +TA     D+ER    G + Y++KP      +  IK  + 
Sbjct: 61  YQLCEEIR---RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 269

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L +  +   G+      NG +AL  AR+ KPD +++DI L ++ GL+
Sbjct: 44  RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGLQ 103

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++ D+E  +IPV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 104 VLSRLRADAE--DIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 161


>gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1198

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K V+I +D+  N+      +E      L   +G EAL++ + +   DV++MD+ + E+ G
Sbjct: 1076 KTVLIADDDVRNIFSLTKALEQHKMKVLAATDGKEALQILKDNPMVDVVLMDMMMPEMDG 1135

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T++I++ S  + +P++AVTA AM GD E+    G   YISKP+ +   +  ++ ++
Sbjct: 1136 YESTREIRKISAYKHLPILAVTAKAMMGDREKCIAAGASDYISKPVDVDQLISLLRVWL 1194



 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 6/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED+    K   +      Y  +    G   +ELA  +KP  I++DIQL    G ++
Sbjct: 808 ILIIEDDTNFAKTLLNFTRKRDYKGIVAVRGDVGIELANHYKPLAILLDIQLPVKDGWQV 867

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME---TIKKYIG 121
            +++K +   + IPV  +++       ++    G   +I+KP++L    +    ++  + 
Sbjct: 868 MEELKSNPVTKPIPVHIMSSL---EMRKKSLLRGAVDFINKPVALEQMKQIFTKLEDALS 924

Query: 122 E 122
            
Sbjct: 925 R 925



 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 48/103 (46%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KKV+IVE+N+ + +     +           N  +++    + + D +I+D+ + + +  
Sbjct: 928  KKVLIVEENKQHAEALSYFLSNYNIQTEIAGNVGDSIGALHKKEVDCVILDMGIPDKNAY 987

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            +  + IK+   L+ +P+I  T   +   EE   +   ++ + K
Sbjct: 988  DTLETIKKSEGLENLPIIIFTGKNLSKGEETRIRQYADSIVVK 1030


>gi|29347801|ref|NP_811304.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339702|gb|AAO77498.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1377

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED++   +    L     Y  ++  NG E + +A ++ P +II DI +    G E +
Sbjct: 1127 LIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADKYIPKLIISDIMMPVKDGFECS 1185

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E+     IP+I +TA A   D  +  + G + YI KP +  +  E +K  I +
Sbjct: 1186 REIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQ 1242


>gi|300868158|ref|ZP_07112790.1| Two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300333782|emb|CBN57970.1| Two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 460

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED  L  +   +L+E   +      NG   +++A    PD+I+ D+Q+ ++ G
Sbjct: 1   MIKILVIEDESLIRETLVELLEAHDFRVSAVENGRMGVKVALSEIPDLILCDVQMPDLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K ++++     +P I +TA + K +  R  + G + Y++KP +    +  I   + 
Sbjct: 61  YEVLKALRQNRLTSAVPFIFLTAQSAKAEFRRGMELGADDYLTKPFTKEELLGAIASILS 120

Query: 122 E 122
           +
Sbjct: 121 K 121


>gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
 gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
          Length = 249

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D      L    +  SG+      NG EA+++  Q  PD+I+MD+ L +I G 
Sbjct: 7   ATIVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTNPDLIVMDVMLPDIDGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++I++     E PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 67  TVTRRIRQQGM--EAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|297567182|ref|YP_003686154.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851631|gb|ADH64646.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 219

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++VED+     L    ++++G   L+ R+G+EA++   +   D++++D+ L   S
Sbjct: 1   MPAKVLVVEDDPGIRMLVATTLQSAGLAVLEARDGVEAMDFIPEA--DLVVLDVGLPRQS 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+++    ++PV+ +T  + + +  R  + G + Y++KP S+      +K  +
Sbjct: 59  GWEVLEAIRQN--FGQLPVLMLTGHSDETNRVRGLESGADDYLTKPFSVRELAARVKALL 116

Query: 121 GEA 123
             +
Sbjct: 117 RRS 119


>gi|212711645|ref|ZP_03319773.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
           30120]
 gi|212685747|gb|EEB45275.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
           30120]
          Length = 239

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KV++V+D+     L    +   G+      N  +   L  +    +I++D+ L    G
Sbjct: 4   SYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESIHLIVLDLMLPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++  +    IP+I VTA   + D     + G + YI KP +    +  I+  + 
Sbjct: 64  LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|209528443|ref|ZP_03276873.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
 gi|209491122|gb|EDZ91547.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
          Length = 352

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 65/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+DNE+N  L    ++  GY  L   NG EAL++ R    D++++DI + +++G ++
Sbjct: 8   VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTALDLVLLDIMMPQMNGYQV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K D +L+ IPVI ++A        R  + G E Y+SKP +  +    I   +
Sbjct: 68  LESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACL 123


>gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MZO-2]
 gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MZO-2]
          Length = 1331

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|150019834|ref|YP_001312088.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906299|gb|ABR37132.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 230

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++++D++  +KL    +   G+  +   +G EAL + +++  D II+DI + ++ 
Sbjct: 1   MQKKILVIDDDKDIVKLITKSLSYEGFGTISAYSGKEALCVLKENNIDFIILDIMMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ + I++       P++ ++A     D+    + G + Y++KP S+      I+   
Sbjct: 61  GLDVCRSIRKS---YNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELNSRIRANF 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
 gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
          Length = 223

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 549

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 59/117 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+DN  N+      +E++G+      +G   +E      PD+I++D+ +  I G E
Sbjct: 9   TILIVDDNPNNLSFLYKTLESAGFQVRVEMDGEGTIEQVEYEPPDLILLDVNMPVIDGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K++K +   ++IP+I +TAFA    + +    G   YI KP      +  ++ ++
Sbjct: 69  TCKKLKNNPISKDIPIIFMTAFADINHKIKGLSLGAVDYIPKPFEQEEVLARVRLHL 125



 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 65/109 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+DN+ N  +  +++E  G+  +   NG + L++A   +PD+I+ D+ +   +  
Sbjct: 425 RKLLVVDDNKENRLVLLNMLEPLGFEVVTAENGQQGLDVAIAIRPDLILTDLFMPVKTAF 484

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
            +  +++E  +L+ +P+IA++A   +  +++ +  GCE ++ KPI    
Sbjct: 485 TMVPEMREIPDLKNVPIIALSARTFEIVQKQSQMLGCEGFLPKPIDQDR 533


>gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
 gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
          Length = 225

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED     K  + L+E + +      NG +AL+       DVI++DI + + +G+E
Sbjct: 2   RILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDYDVIVLDIMMPKKNGME 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  QI+  SE   +PV+ +TA +   D     + G + Y+ KP +   F+  +K     
Sbjct: 62  VLSQIR--SEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKALARR 118


>gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 222

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +  M   +  +  +GY      NG +A+ LA  +  D++I+D+ + +I+GLE
Sbjct: 2   KILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNYDLVILDVMIPKINGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ +       +I ++A     D+      G + Y++KP   +  +  I+  +  
Sbjct: 62  VCRILRREKNPAY--IILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRR 118


>gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 228

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED      L  + +E +GY  +   +G+  L L + H  D++I DI L ++ G
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+TK+I++ +    IP++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELTKEIRKSN--PRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|291569797|dbj|BAI92069.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 372

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++ V+D+  N+ L   ++   GY      +G  AL+   +  P ++++D+ +  I G E
Sbjct: 14  HILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+ +  L  IP++ +TA             G + +I KP+ +   +  ++  + 
Sbjct: 74  VTRRIRNNPNLPFIPILLITAHDQSS-VVEGLDAGADDFIRKPVEIDELLARVRSLLR 130


>gi|258593328|emb|CBE69667.1| putative response regulator in two-component regulatory system
           (CheY-like protein) [NC10 bacterium 'Dutch sediment']
          Length = 123

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/117 (42%), Positives = 80/117 (68%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VEDN+ N K+ RDL+    Y  ++  NG  AL+   + +PD+I+MDIQL ++SGLE+
Sbjct: 6   ILHVEDNQYNRKIIRDLLSKHNYEIMEAHNGEAALDALARRRPDLILMDIQLPKLSGLEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+ D  L +IP+IA+T+FA+ GDE    + GC AYI+KP      +E I++++G
Sbjct: 66  TRRIRADPSLAQIPIIAITSFALSGDERTAFEAGCSAYIAKPFRPRDLLEMIQRFLG 122


>gi|291451644|ref|ZP_06591034.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354593|gb|EFE81495.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED++         +   G+       G E L L R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255692182|ref|ZP_05415857.1| putative response regulator receiver domain protein [Bacteroides
            finegoldii DSM 17565]
 gi|260622047|gb|EEX44918.1| putative response regulator receiver domain protein [Bacteroides
            finegoldii DSM 17565]
          Length = 1358

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VEDN+      ++ +E   Y  ++  +G E    A +  PD+II DI + ++ G+
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPDLIISDIMMPKVDGI 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ ++IK + +   IPVI +TA      +    + G ++Y+SKP +  + M  I+K I +
Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1224


>gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 232

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     ++  G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 233

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 623-39]
 gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 623-39]
          Length = 1331

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHTDFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium]
          Length = 220

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED++      R  +  +GY      +G EA     ++   ++I+DI L  ++
Sbjct: 1   MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++ +  +   + P++ +TA +   ++ R      + Y++KP  + I ++ ++  +
Sbjct: 61  GHELLREFRAKN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  I G
Sbjct: 1   MPTILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 61  FQVCKAIREEN--KKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|50084005|ref|YP_045515.1| component of chemotactic signal transduction system [Acinetobacter
            sp. ADP1]
 gi|49529981|emb|CAG67693.1| component of chemotactic signal transduction system [Acinetobacter
            sp. ADP1]
          Length = 1437

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 66/118 (55%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +M+V+D+    K+   L+E  GY  +  ++G +ALE     +P +I++DI++ ++ G E+
Sbjct: 1310 IMVVDDSVTVRKVTSRLLERQGYDVVTAKDGQDALEQLEHIRPSLILLDIEMPQMDGFEL 1369

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T+ I++ S L  +P+I +T+   +   E  ++ G + Y+ KP      +  I+  + +
Sbjct: 1370 TRYIRQHSILNSLPIIMITSRTGEKYREIAQQLGVDDYMGKPFQEDDLLTKIQNLLAQ 1427


>gi|17228581|ref|NP_485129.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130432|dbj|BAB73043.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 378

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 56/117 (47%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++D+     L + +++  GY  +   NG E +  A   +P +II D  +  ++GLE+
Sbjct: 4   ILIIDDDLSIQILLKRILQKQGYQIVTASNGEEGITQALTSRPALIICDWIMPGLNGLEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +IK D  L     I +T+     D  +    G + +I+KPI  +     ++  + 
Sbjct: 64  CHRIKTDPNLSTTFFILLTSLDSVADRVKGLDAGADDFITKPIEQNEMQARVRAGLR 120


>gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP
           [Corynebacterium pseudotuberculosis C231]
 gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 237

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K++++V+D    ++L    ++  G+      +G+EALE+A++ KPD  I+D+ +  + G
Sbjct: 8   TKRILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVMMPGMDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+  +++ +    + PV+ +TA             G + Y++KP SL   +  ++  + 
Sbjct: 68  YELLPKLRAEGL--DGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILR 125

Query: 122 E 122
            
Sbjct: 126 R 126


>gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +++IVED+E    + R+ +   GY       G E LE  +    D++I+DI L  + 
Sbjct: 1   MLGRLLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+    + ++P++ ++A   + D+ +  K G + Y++KP SL      I+  +
Sbjct: 61  GYSLCQSIR---WVSDVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 897

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 69/118 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN  N KL   L+   G+   +  NG EA+ +  + +P +I MD+++  + G E
Sbjct: 680 RILVVDDNWTNRKLVVKLLNPLGFHVREAENGQEAIAIWEKWEPHLIFMDMRMPVMDGYE 739

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ IK   + Q   +IA+TA A++ ++  +   GC+ ++ KP  +   ++TI K++G
Sbjct: 740 ATQLIKRHLKGQATVIIALTASALQQEKSIVLSAGCDDFVRKPFRVDQLLQTIVKHLG 797


>gi|312114151|ref|YP_004011747.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219280|gb|ADP70648.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 244

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+       +  +  +G    +  +G+         + D+I++D+ +    GL 
Sbjct: 6   HILVVDDDRRIRTSLKRFLTDNGMRVTEVADGVAMFAAVEAGRFDLIVLDVMMPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      +IPV+ +TA + + D     + G + Y+ KP S    +  I+  +  
Sbjct: 66  LCRRLR---GTSKIPVVLLTAMSGETDRIIGLEIGADDYVCKPFSPRELLARIRAVLRR 121


>gi|270291731|ref|ZP_06197947.1| DNA-binding response regulator SaeR [Streptococcus sp. M143]
 gi|270279816|gb|EFA25657.1| DNA-binding response regulator SaeR [Streptococcus sp. M143]
          Length = 232

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + +    +  +GY  L   +G E LEL R+   D+II DI +  + 
Sbjct: 1   MKKTILLVDDEIDILDIQHRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++       + P +  TA   + D+      G + +I KP S    +  +   +
Sbjct: 61  GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074]
 gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY     ++G  AL+   +   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ D     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRSDGHT--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|237755616|ref|ZP_04584230.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692211|gb|EEP61205.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 219

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDN       R+++E +GYI     +G EAL  A     DVII+D+ L +I GLE
Sbjct: 2   KILLVEDNLDLNNTIREVLELNGYIVDSAFDGKEALNFAENSSYDVIILDLMLPDIDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+        PVI +TA     D+      G + Y++KP  +   +  I+     A
Sbjct: 62  VLKTIRSKGIY--TPVIILTAKNQTKDKITGLDLGADDYVTKPFDVDELLARIRAIGRRA 119


>gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 233

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|218681085|ref|ZP_03528982.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 233

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D+     L    +  +G+      +G EA         D+IIMD+ +   SG+
Sbjct: 12  AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T+ ++    ++ +P+I +TA A  G+     + G + Y+SKP      +  I   +  
Sbjct: 72  EVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    ++  +++    YI     +G +A +     + D++I+D+ L  + G+ 
Sbjct: 2   RILVVEDDLQLAEMLAEVLSDHNYIVDLAEDGEKAWDYVNTLEYDLVILDVTLPRLDGIG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++ +   E    PV+ +TA     D+      G + Y+ KP  L   +  ++  +  +
Sbjct: 62  FCQRWRGKGEA--TPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRRS 119


>gi|182678198|ref|YP_001832344.1| response regulator receiver modulated diguanylate cyclase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634081|gb|ACB94855.1| response regulator receiver modulated diguanylate cyclase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 457

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 56/121 (46%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+DN LN+KL    +    +      NG +AL +      D++++D+ +  + 
Sbjct: 1   MSARILVVDDNPLNLKLLEARLTAEYFTVTTATNGFDALAICEAGGCDIVLLDVMMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + IK+      I V+ VT+     D     + G + +++KPI     +  ++   
Sbjct: 61  GFNVCRHIKQSPNTMHISVVIVTSLDQTADRLAGLEAGADDFLNKPIDEIALIARVRSLA 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  V++VED    ++  +  +E   Y      +    L     + PD+ I+ + L + 
Sbjct: 150 MSKGHVLLVEDRVSTIERVQAALEDL-YPLEIVSDPGLVLSRGENNPPDLCIISLGLADY 208

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEER---IRKGGCEAYISKPISLSIFMET 115
            GL +  Q++     +      + A   + D +R       G   Y+ +P      +  
Sbjct: 209 DGLRLCSQLRTGERTRNS---MLLALVEREDRQRLLTALDLGVNDYLIRPFDNHELIAR 264


>gi|159899218|ref|YP_001545465.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892257|gb|ABX05337.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 328

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D   ++   R ++E   Y     R+G+EAL   +   PD++++D+ +  ++
Sbjct: 1   MSEIILVVDDEARSIDTLRRVLERERYTVRIARDGVEALADIQACMPDLVLLDVTMPVMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++  E Q +PV  +T            + G + +I+KP   ++ +  I+  +
Sbjct: 61  GFEVCRRLRDREETQLLPVAMLTGLNDDESRILGLEMGADDFINKPFERTVLLARIRSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121


>gi|110598537|ref|ZP_01386806.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110339841|gb|EAT58347.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 230

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 59/117 (50%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED+    +L    +E +G+    +  G +AL    +   D++++D+ L  I G E+ 
Sbjct: 7   LVVEDDPHLAQLLGYNLERAGFKCHVSSTGEDALLQLVRKSFDLVLLDVMLPGIDGFEVC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +QI+++   +++P+I +TA   + D     + G + Y+ KP S    +  I+     
Sbjct: 67  RQIRQNQLFRDLPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELILRIRAIFKR 123


>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1526

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N K+    +E+ GY A    NG E L+L ++   D+I+MD Q+  + G E
Sbjct: 1251 RILLAEDNPVNQKVALRQLESLGYKADVVANGQEVLDLLQKVSYDLILMDCQMPVMDGYE 1310

Query: 64   ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T+++++          VIA+TA AM+ D ER  + G + Y+SKP+        +  +
Sbjct: 1311 ATRRLRQQERRSGHRTVVIAITANAMQEDRERCLQAGMDDYLSKPVLKEDLQRLLNHW 1368



 Score =  105 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 5/126 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
            K+++ V+DN  N K+ R    T G +  +  N  +A++  RQ         + ++D+Q+ 
Sbjct: 1097 KRLLAVDDNATNRKILRCQATTWGMVVEEAENAYQAMDKLRQAVREGRPFPLAVLDMQMP 1156

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E+ G  + + IK D +L E  ++ +T+  +     R  + G  AY+ KP+  S   E + 
Sbjct: 1157 EVDGETLGRWIKADPQLAETQLVMMTSLGLGEHSRRAAEIGFAAYLVKPVKQSRLQEALV 1216

Query: 118  KYIGEA 123
              +G++
Sbjct: 1217 MALGKS 1222


>gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 228

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED      L  + +E +GY  +   +G+  L L + H  D++I DI L ++ G
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+TK+I++ +    IP++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELTKEIRKSN--PRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 920

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLE 63
           +++VEDNE+N ++  +L++  G   +   +G +A++      + D ++MDIQ+  + G E
Sbjct: 555 ILLVEDNEINQQVACELLQGEGVTVVVANSGQQAVDRVLSGERFDAVLMDIQMPGMDGYE 614

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I++  +  ++P+IA+TA AM GD ER    G   +I KPI   +  ET+ +Y+
Sbjct: 615 ATQVIRKQPQFSDLPIIAMTANAMAGDRERCLAAGMNDHIGKPIQPKLLFETLGRYV 671



 Score = 58.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQE 58
           +V++V+DN +  ++  + +    +         E +E     +AR     ++++  +   
Sbjct: 406 RVLVVDDNPVVRQILVESLAIFSFCVEALATVEEVIEALGQAIARGEPYGLVVLAGRFGG 465

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC---EAYISKPISLSIFMET 115
             G+ +  +I        +P + +   + + D   +   G    E +++KPI+ +I  E 
Sbjct: 466 KGGVALAGEINRCYPQLTLPKMVLVGASERDDVVAM--AGAQLVELFVTKPITQTILFEG 523

Query: 116 IKKYIG 121
           + + +G
Sbjct: 524 VLEVLG 529


>gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 223

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D     +L R      G+  ++  NGM+A+EL R+H  D+II+D+ + E+ G
Sbjct: 1   MYNILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHNFDIIILDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
                +I++   + + PV+ ++A   + D     + G + Y+ KP S    M  +   + 
Sbjct: 61  FSTCHEIRK---ICDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIMK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332531237|ref|ZP_08407150.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
 gi|332039344|gb|EGI75757.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
          Length = 247

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L  + +   G  A    +G +     R    D++++D+ L    GL 
Sbjct: 6   RILVVDDDPDIRALLAEYLGGQGLRADCAADGRQMRATLRAAPVDLVVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ DSE   +PV+ +TA     D     + G + Y+ KP      +  I+  +  
Sbjct: 66  LLRWLR-DSEWAHVPVLMLTARGDNVDRIIGLEMGADDYLPKPFEPRELVARIRAVLRR 123


>gi|268638179|ref|XP_002649186.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|256013041|gb|EEU04134.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1732

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 7/125 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57
            +KV++ EDN +N KL + L+   G+     ++G +AL+   + K      D I+MDIQ+ 
Sbjct: 1550 QKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSILYDCILMDIQMP 1609

Query: 58   EISGLEITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             +SGLE T  I+E    E   IP+IAVTA AMKGD+E+  + G + Y++KPI+  +  E 
Sbjct: 1610 VLSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINPKLLYEV 1669

Query: 116  IKKYI 120
            I   I
Sbjct: 1670 INTQI 1674


>gi|218128693|ref|ZP_03457497.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
 gi|217989148|gb|EEC55463.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
          Length = 1357

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN    +   + +  + Y  L+  NG EAL + ++ +  +I+ D+ +  + GL++
Sbjct: 1113 ILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIVKEQEVGLILTDVMMPVMDGLQL 1171

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             KQIK++     IPVI ++A     ++    + G + YI KP S+ +    IK    
Sbjct: 1172 CKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFR 1228


>gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 233

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E+   +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|165932901|ref|YP_001649690.1| response regulator PleD [Rickettsia rickettsii str. Iowa]
 gi|165907988|gb|ABY72284.1| GGDEF family protein [Rickettsia rickettsii str. Iowa]
          Length = 450

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 65/118 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D+I++D+ + EI G
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D E   IPV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  FEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 66.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVVQTKNIKQMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270


>gi|220927155|ref|YP_002502457.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
 gi|219951762|gb|ACL62154.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium nodulans ORS 2060]
          Length = 457

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D   N+KL    +    +  +   NG++A+ +  +   D++++D  +  + 
Sbjct: 1   MSARVLIVDDLFPNLKLLETKLSLEYFDVVSAMNGLDAIAICEKGLCDIVLLDAMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K       +PV+ VTA     D  R    G + +++KPI  +  +  ++  +
Sbjct: 61  GFEVCRRLKTTPTTAHLPVVMVTALDQPSDRLRGLDAGADDFLTKPIDDTALLARVRSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 90.2 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I +D   +       +  S +      +  +ALE A +   DV ++ +  +   GL + 
Sbjct: 159 LIADDRRASAGRMAAALGQS-HCVEVVCDPHQALEKATEGSYDVALVSLDFEGFDGLRLC 217

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEE---RIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            Q++     + +PV+ +   A  GD     R    G   Y+ +PI  +  +  I+  +  
Sbjct: 218 SQLRSLDRTRTMPVVML---ADAGDRARIMRGLDLGVHDYLVRPIDRNELVARIRTQVRR 274


>gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 1587]
 gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae 1587]
          Length = 1331

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1202

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 5/124 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++ EDN +NM L ++L++  G        G EALE   +   D+++MD+Q+ E+ G E
Sbjct: 1079 RVLLAEDNAINMHLAKELLKKRGNSVTGVSTGKEALEALAKESFDLVLMDVQMPEMDGEE 1138

Query: 64   ITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119
             T++I+        +P++A+TA+A++GD ER    G + Y+SKPI++      +  I + 
Sbjct: 1139 ATRRIRAGEAGDPSVPIVALTAYALEGDRERFLAAGMDDYLSKPINMEELDRVLARIDQA 1198

Query: 120  IGEA 123
              E+
Sbjct: 1199 -RES 1201


>gi|315222867|ref|ZP_07864751.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188061|gb|EFU21792.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 228

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D     ++ +  +  +GY      +G EALE+ +++  D+II DI +  + 
Sbjct: 1   MAKRILLVDDEVEITEINKRYLIQAGYEVNVAHDGQEALEIFQKYSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++       E P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLIGEV--QYLSPEQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 246

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++V+D     +L    +  +G+  L   +G EAL+       D+ ++D+ L ++ G 
Sbjct: 9   ATVLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPDMDGF 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I ++++E     E+PV+ +TA     D+ +    G + YI+KP SL   +  I+  +  
Sbjct: 69  TILRKLRERD--AELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRR 126


>gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQRIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  P+V+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PNVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 223

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|146275719|ref|YP_001165879.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans
            DSM 12444]
 gi|145322410|gb|ABP64353.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans
            DSM 12444]
          Length = 1782

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            +++IV+D+  N+     ++E+     +    G+E + +       DV ++DI + ++ G 
Sbjct: 1647 RILIVDDDIRNIYSLTSVLESHDVEVVHAEGGVEGIRILESTPGIDVALIDIMMPDMDGY 1706

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  +QI+    +  IP++AVTA AMKGD ++    G   YISKP+ + + +  ++ +IG 
Sbjct: 1707 ETMRQIRATPAIASIPLVAVTAKAMKGDRQKCLDAGASDYISKPVDIDLLLALLRVWIGR 1766

Query: 123  A 123
            +
Sbjct: 1767 S 1767



 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            VMIVED+     +  DL    G   + +  G   + + R+ KP  I +D+ L +I G  +
Sbjct: 1503 VMIVEDDPTFATILIDLAHQCGLKGVISSAGSGTVAMVRKLKPSAITLDLGLSDIDGFVL 1562

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
               ++ + +   +PV  ++              G    I KP S        +     +
Sbjct: 1563 LDLLRNEPDTSSVPVHVISGADQAAH---ALTLGAAGVIEKPASREELQALFESIADRS 1618


>gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 230

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK++I+ED +   +     +E  GY      NG   LE A     D+I++D+ L E+ G
Sbjct: 3   SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++++   ++ P+I +TA     D       G + YI+KP ++   +  ++ +  
Sbjct: 63  FEVARRLRKE---KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 227

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   + +VED+     +    ++  GY      N  +  +L   + PD+ I+DI L  + 
Sbjct: 1   MTVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K+I+ +S   ++P+I ++A   + D+    + G + Y++KP S    +  +K+  
Sbjct: 61  GYEFCKKIRNES---DVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLF 117

Query: 121 GEA 123
             +
Sbjct: 118 KRS 120


>gi|260063103|ref|YP_003196183.1| two-component system, transcriptional regulatory protein
           [Robiginitalea biformata HTCC2501]
 gi|88784672|gb|EAR15842.1| two-component system, transcriptional regulatory protein
           [Robiginitalea biformata HTCC2501]
          Length = 240

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  + +     +NGME  E  ++   DV I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGIVLKDYLSMNDFDVTLAKNGMEGFEKFKKEPFDVCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E ++   IP+I +TA  MK D  +  K G + Y++KP    + +  +K  +  
Sbjct: 66  TLAKEIREKND--HIPIIFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLVKLKAILQR 123


>gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
          Length = 1113

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 777 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 836

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 837 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 891



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 634 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 693

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 694 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 747


>gi|227892745|ref|ZP_04010550.1| two component response regulator [Lactobacillus ultunensis DSM
           16047]
 gi|227865386|gb|EEJ72807.1| two component response regulator [Lactobacillus ultunensis DSM
           16047]
          Length = 221

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED    +++    ++ +GY      NG++A+E A++   DVII+DI +  + G+ 
Sbjct: 2   RILVAEDEPQLLRVLTAAMKHAGYDVDPVDNGLKAVEHAKESSYDVIILDIMMPVMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             K+I++  +  +  V+ +TA A   D       G + YI+KP SL   +  ++     A
Sbjct: 62  ALKEIRKSGD--KTYVLMLTAKAEVDDRVTGLDSGADDYITKPFSLKELLARLRSKERRA 119


>gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
 gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
          Length = 1137

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQL 56
            + +++VED+  N+     ++E +G      RNG EALE         +   D+++MDI +
Sbjct: 1012 RTILVVEDDVRNVFALSSVLEPTGARVEIARNGREALEALERSNAAGESAVDLVLMDIMM 1071

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ G     +I+   E + +P+IA+TA AMK D+E+    G   YI+KP+ +   +  +
Sbjct: 1072 PEMDGFAAMAEIRRRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1131

Query: 117  KKYIGE 122
            + ++ +
Sbjct: 1132 RVWMPK 1137



 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ED+    ++  DL    G+  +    G + L  A ++ P  +++D+ L + SGL 
Sbjct: 745 TILVIEDDPRFARILCDLAHEMGFQCVIASTGSDGLAAALEYGPSAVVLDMNLPDFSGLG 804

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           +  Q+K +   + IPV  V+   +    +   + G   Y  KP+      + +
Sbjct: 805 VLDQLKRNPATRHIPVHVVS---VADYMQEAMERGAIGYALKPVKREELEQAL 854



 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 51/95 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++V++VED+    +    L+ T G   +      +AL+L +    D ++MD+ L +++G
Sbjct: 865 MRRVLVVEDDARQRESVHHLLATDGVEIVGAATARQALDLLKGSTFDCVVMDLHLPDLNG 924

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            E+ +Q+ E  E+   PVI  T   +  DEE+  +
Sbjct: 925 YELLQQMAEQEEVSFPPVIVYTGRNLSRDEEQQLR 959


>gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H]
 gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea
           34H]
          Length = 240

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++++S    IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQNSN--NIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRR 123


>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1117

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N ++   L+   G+      +G EALE  R    DV++MD+Q+ E+ GLE
Sbjct: 869 RILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDGLE 928

Query: 64  ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I+       ++P++A+TA AM+GD++     G + YISKPI      E + KY
Sbjct: 929 ATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 985



 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58
           +V++V+DN +N  +    +   G       +    +       A     +V ++D Q+  
Sbjct: 722 RVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAAAMGTPWEVAVVDSQMPV 781

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G E+ + I     L    ++  ++  M  D+   +    +A++ KP+  S  ++TI +
Sbjct: 782 VTGSEMVRMIHAIPMLAGTRIVVTSSQGMPADQNDGQPA-IDAFLHKPLRQSTLLDTIGR 840

Query: 119 YIG 121
            +G
Sbjct: 841 VLG 843


>gi|150017343|ref|YP_001309597.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903808|gb|ABR34641.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 219

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++VED           +    Y  L+  NG EAL +    K D++++D+ L  I G
Sbjct: 1   METILVVEDELSIRSFICINLRKKKYEVLEAENGEEALSIFNNRKIDIVLLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I++ S  Q + +I +TA + + D  +    G + Y+ KP S+      I     
Sbjct: 61  FEVCQKIRDIS--QSVGIIMLTARSQEEDRVKGLVEGADDYLLKPFSMVELEARIISLAR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L  + +   G+       G   LE A Q   D++++D+ L  I G E
Sbjct: 2   HILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKALQPGIDLVVLDVMLPGIDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K++++ S+   +PV+ +TA     D     + G + Y++KP +       I+  +  
Sbjct: 62  ILKRLRQRSK---VPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRR 117


>gi|117923614|ref|YP_864231.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607370|gb|ABK42825.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 899

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ ED+  N+ L    ++ + Y      NG EALE  ++H  D+I+MDIQ+ E+ GL 
Sbjct: 773 TILLAEDSPDNVLLVERFLKKTAYRLDVVGNGREALESVKKHHYDLILMDIQMPEMDGLS 832

Query: 64  ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ ++           PV+A+TA A + D E   + GC+ +++KP      ++TI+++
Sbjct: 833 ATRTLRSWEREQGTPRTPVLALTAHAFREDREASIEAGCDGHLTKPFKKDELLKTIQRH 891


>gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 232

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+  +  ++G EALE   +   D++++D+ L +IS
Sbjct: 1   MASNILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMMLPKIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++  K+I+E S    +PV+ V+A   + D+      G + YI+KP S+      +K  I
Sbjct: 61  GMDFLKKIREKS---HVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    ++     +   G+      +G  AL  A   +P VI++D+ +  + GL 
Sbjct: 8   RVLLVDDEPHILQFLELGLHNEGFEVRTASDGECALREAASFEPHVIVLDVMMPGMDGLA 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +++KE  E ++I VI +TA     D       G + Y++KP S    +  I+  + 
Sbjct: 68  VCRRLKE--EGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLR 123


>gi|328885443|emb|CCA58682.1| Two-component hybrid sensor and regulator [Streptomyces venezuelae
            ATCC 10712]
          Length = 1785

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    +++MDI + E+ G 
Sbjct: 1665 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTIVLMDIMMPEMDGY 1724

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++  
Sbjct: 1725 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEEWMRG 1784

Query: 123  A 123
            A
Sbjct: 1785 A 1785


>gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 230

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G +ALE   ++  D++++D+ L  + G
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGADLVLLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++       +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLR---VRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|264676273|ref|YP_003276179.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533391|ref|ZP_07046773.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262206785|gb|ACY30883.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718597|gb|EFI59572.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 249

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      +    +E  G      ++G EAL+  RQ +PD++++DI L ++ G+++
Sbjct: 22  VLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVDGVDV 81

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I+ DS   ++PVI VTA A   D+    + G + Y+ KP +    +  ++  +  
Sbjct: 82  LRMIRNDS---DVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRR 136


>gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 232

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              V++V+D    ++  R  +   GY  +   +G  AL+   + KPDV+++D+ L ++ G
Sbjct: 6   TATVLVVDDEPQIVRALRINLNARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++       +P+I ++A     D+ +    G + Y++KP  +   +  ++  + 
Sbjct: 66  TEVIAGLR---GWTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVR 122

Query: 122 EA 123
            +
Sbjct: 123 RS 124


>gi|241763478|ref|ZP_04761531.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax delafieldii 2AN]
 gi|241367319|gb|EER61650.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax delafieldii 2AN]
          Length = 376

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
             V++V+D   N+ L   L+    +       G +AL +A     PD+I++DI + E+ G
Sbjct: 19  ATVLVVDDTPENLTLMGSLL-REHFQVKVANQGDKALRIALSGTPPDLILLDIMMPEVDG 77

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++K     ++IPVI +TA +   DE+     G   YI+KPIS  I +  +  ++
Sbjct: 78  YEVCRRLKAHPSTRDIPVIFLTARSEPDDEQAGLALGAVDYITKPISPPILLARVNTHL 136


>gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 237

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I+ED E    + +  +   GY   Q  +G E L        D++I+D+ L ++ G +
Sbjct: 5   KILIIEDEESINNIVKSYLVKEGYEVYQAFDGEEGLRKFLAEDIDLVILDLMLPKMLGED 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+  SE   +PVI ++A   + D+    + G + YI+KP S    +E IK  +  
Sbjct: 65  VMKEIRNRSE---VPVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLRR 120


>gi|227541888|ref|ZP_03971937.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182331|gb|EEI63303.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 226

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++E  G+  +   +G EA+    + +PD+I++D+ L  ++
Sbjct: 1   MKAKILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           G++I K I+  S    +P++ +TA     D     + G + Y++KP     
Sbjct: 61  GIDICKTIRRSSP---VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKE 108


>gi|172035205|ref|YP_001801706.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171696659|gb|ACB49640.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 122

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L   L+  +G+      +G EALE  +   PD+II+D+ + +++G
Sbjct: 1   MPTILLADDSTAQRELIAGLLTDNGFSVTTAMDGAEALEKLKSLAPDLIILDVVMPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  + IK D + + IPVI  +    + D     K G +AYI KP      + T+K+ + 
Sbjct: 61  YQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIIKPFPHEELLGTVKQLLR 120

Query: 122 EA 123
            +
Sbjct: 121 NS 122


>gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE      PDV+I+D+ L +I G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERWEDG-PDVLILDVMLPDIDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|310829931|ref|YP_003962288.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308741665|gb|ADO39325.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED+    +L RD +E + +      +G   L  A +   D+I++D+ L  + G
Sbjct: 1   MKKILIIEDDRKIAELERDYLEINDFQVALAADGDTGLLFAVRDDFDLIVLDLMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I ++I+E    +E P+I V+A     D+ R    G + Y+ KP S +  +  +K +IG
Sbjct: 61  FAICRRIREK---KETPIIMVSAKRDDVDKIRGLGLGADDYMVKPFSPAELVARVKAHIG 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|299535145|ref|ZP_07048470.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298729462|gb|EFI70012.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 231

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D++  ++     +E  GY   +  NG+EA++L R H   +IIMDI + ++ G+  
Sbjct: 3   ILICDDDKEIVRAISIYLENEGYQVFKAYNGIEAIDLIRDHVIHLIIMDIMMPKMDGITA 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I++D+    IP+I ++A +   D+      G + Y++KP +    +  +K  +  
Sbjct: 63  TMKIRQDNM---IPLIMLSAKSEDYDKILGLNIGADDYMAKPFNPLELVARVKSQLRR 117


>gi|295086680|emb|CBK68203.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
            B-, and HSP90-like ATPase./Response regulator receiver
            domain./Two component regulator propeller./Bacterial
            regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
            domain. [Bacteroides xylanisolvens XB1A]
          Length = 1540

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1254 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1312

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1313 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1367


>gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 249

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56
           +V+IVED EL  ++    +E  GY  +  ++G  A+EL R       +   D++++D+ L
Sbjct: 19  RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I+GL+I + ++       IP++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 79  PQINGLDICRLLRHQGN--SIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARC 136

Query: 117 KKYIGE 122
           +  +  
Sbjct: 137 RALLRR 142


>gi|302546427|ref|ZP_07298769.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302464045|gb|EFL27138.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1432

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60
            ++++IV+D+  N+     ++   G       NG E L++  ++ PD  +++MD+ + E+ 
Sbjct: 1250 RRILIVDDDIRNVFALTHVLGRVGMTVKYAENGREGLDVLHRN-PDVSLVLMDVMMPEMD 1308

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E  + I+    L ++P+IA+TA AM GD E+  + G   Y+ KP+ +   M T+   +
Sbjct: 1309 GYETIRAIRGTPRLADLPIIALTAKAMPGDREKALESGANGYVPKPVDVDRLMSTVCDLL 1368


>gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 233

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T]
 gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 257

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    +L    ++  G+      +         +   D+I++D+ L    GL 
Sbjct: 8   RILVVDDDARLRELLSRYLQEQGFSVKAVGDAPMMDRALHREHYDLIVLDLMLPGEDGLS 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++      +IPVI +TA     D     + G + Y++KP +    +  I+  +  
Sbjct: 68  ICRRLRAAEN--QIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRR 124


>gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
 gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  ++T    A     G E L+  ++ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|1119215|gb|AAA87378.1| pleD [Caulobacter crescentus CB15]
          Length = 454

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D E N++L    +    Y      +G  AL +A +  P +I++D+ +  + 
Sbjct: 1   MSARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARICPTIILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++K+D   + IPV+ +TA   +GD  +  + G   +++KPI   +    ++   
Sbjct: 61  GFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+DNE   +     +    +  +   +  +A +++     D++I++   +   GL 
Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA-KISAGGPVDLVIVNAAAKNFDGLR 212

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T  ++ +   +++PV+A+     +G   +  + G    +S+PI        +K  I  
Sbjct: 213 FTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271


>gi|94986298|ref|YP_605662.1| response regulator receiver/SARP domain-containing protein
           [Deinococcus geothermalis DSM 11300]
 gi|94556579|gb|ABF46493.1| response regulator receiver and SARP domain protein [Deinococcus
           geothermalis DSM 11300]
          Length = 344

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D+   +KL   ++  +GY    + +  EAL+L +   PD++I D+ +  ++G
Sbjct: 1   MPRILVVDDDAAILKLISVILARAGYEVRTSSHPNEALDLLQVFTPDLVISDVVMPYMTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  ++++   +L  +P I +++ A + D  R    G + Y+ KP +       +   + 
Sbjct: 61  LEFLERVRNHEKLSALPFILLSSHAERDDVRRGMNLGADDYLPKPFTPHDLTTAVGARLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|134291928|ref|YP_001115697.1| two component AraC family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134135117|gb|ABO59442.1| two component transcriptional regulator, AraC family [Burkholderia
           vietnamiensis G4]
          Length = 274

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   +++L  +++ ++        +G++A   A+   PD+I+MD+++  + G 
Sbjct: 20  AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAIVPDLILMDVRMPRMDGF 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              + +    + Q IPVI +TA     D     + G   YI KP   +  +  I+ ++  
Sbjct: 80  AACRLLASTPDTQNIPVIILTAAGDLDDRIAGLETGALDYIVKPFEPAEVIARIRNHLKR 139

Query: 123 A 123
           A
Sbjct: 140 A 140


>gi|253566417|ref|ZP_04843870.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
 gi|265767277|ref|ZP_06094943.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
 gi|251944589|gb|EES85064.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
 gi|263252582|gb|EEZ24094.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
 gi|301165286|emb|CBW24857.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis 638R]
          Length = 1329

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN   +   R  + T  Y  L   NG+EAL +   H  ++++ D+ + ++ G E+
Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLDNHYVNLVVSDVMMPQMDGFEL 1143

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IK D     IPV+ +TA      +    + G +AYI KP S+   +  I   I
Sbjct: 1144 CKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLI 1199


>gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 222

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRR 117


>gi|60683701|ref|YP_213845.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis NCTC 9343]
 gi|60495135|emb|CAH09956.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis NCTC 9343]
          Length = 1329

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN   +   R  + T  Y  L   NG+EAL +   H  ++++ D+ + ++ G E+
Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLDNHYVNLVVSDVMMPQMDGFEL 1143

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IK D     IPV+ +TA      +    + G +AYI KP S+   +  I   I
Sbjct: 1144 CKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLI 1199


>gi|53715770|ref|YP_101762.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
 gi|52218635|dbj|BAD51228.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
          Length = 1329

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN   +   R  + T  Y  L   NG+EAL +   H  ++++ D+ + ++ G E+
Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLDNHYVNLVVSDVMMPQMDGFEL 1143

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IK D     IPV+ +TA      +    + G +AYI KP S+   +  I   I
Sbjct: 1144 CKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLI 1199


>gi|332140189|ref|YP_004425927.1| two-component system response regulator (hybrid family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550211|gb|AEA96929.1| two-component system response regulator (hybrid family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 358

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ +   ++    Y      +G  AL++ +Q  PD+I++DI +  + G E+
Sbjct: 13  ILVVDDEPANIDILLGILGPF-YDVKVAPSGAIALKITQQFTPDLILLDIMMPGMDGFEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +Q+K D  L  IPVI VTA +   +EE+  + G   YI+KP+S SI +  +K +
Sbjct: 72  CRQLKSDKLLSRIPVIFVTALSQGENEEKGFELGAVDYITKPVSPSIALARVKTH 126


>gi|150388491|ref|YP_001318540.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948353|gb|ABR46881.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED+    +L RD +E + +       G E L+ A  H  D+II+DI L    G
Sbjct: 1   MKKILILEDDISIAELQRDYLEINQFDVDIEARGDEGLQRALNHDYDLIILDIMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+I+     +  P++ V+A     D+ R    G + Y++KP S +  +  ++ +I 
Sbjct: 61  FEICKEIR---LTKNTPILLVSAKKEDIDKVRGLGLGADDYMTKPFSPNELVARVRAHIA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 227

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 223

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae V51]
 gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae V51]
          Length = 1331

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLDHADFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003]
          Length = 243

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++    + PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGI--DAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|117926618|ref|YP_867235.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610374|gb|ABK45829.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 800

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDN +N ++    +   G+     ++G++AL L ++   D+I+MD+++ ++ GLE 
Sbjct: 676 ILVAEDNLVNQQIAAGYLTRLGHRYQFAKDGIQALNLVQKGGFDLILMDVRMPDMDGLEA 735

Query: 65  TKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+ I+   +   +IP++A+TA   + D +  R+ G + ++ KP+ LS   + ++ ++
Sbjct: 736 TRHIRALPKPWCDIPIVALTANVFEQDRQNCREAGMDGFLPKPLDLSQLEQALRTHL 792


>gi|313204586|ref|YP_004043243.1| two component transcriptional regulator, arac family [Paludibacter
            propionicigenes WB4]
 gi|312443902|gb|ADQ80258.1| two component transcriptional regulator, AraC family [Paludibacter
            propionicigenes WB4]
          Length = 1140

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IV+DNE   +    +     Y  L+  +G  A +L  +  PD++I D+ +  + G E+ 
Sbjct: 893  LIVDDNEDFREFISSMF-IENYRILKAEDGKIAYQLILEKMPDLVISDVMMPNMDGFELC 951

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +K+D  +  IP+I +TA   + ++    + G E YI KP ++ +    +KK +  
Sbjct: 952  RLMKQDIRISHIPIILLTAKDGEENKYHGLESGAEDYIPKPFNMEMLSLKVKKIVDR 1008


>gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 228

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + LEL R+ +PD++++D+ L  I G E+ 
Sbjct: 8   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 68  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121


>gi|262197751|ref|YP_003268960.1| histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262081098|gb|ACY17067.1| histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 678

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN ++ ++ + +++  G       +G+EALE A + + D+I+MD Q+  + G+
Sbjct: 559 ARVLLVEDNMVSRRIAQRMLQKVGCDVTLAGHGVEALERAAEARFDIILMDCQMPVMDGI 618

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+++++       PVIA+TA A +   +R  + G + Y+ KP+        I +Y+
Sbjct: 619 TATRELRKREHEHHTPVIALTADAHEDSRKRCLEAGMDDYLRKPVGKDSLCRAIDRYL 676


>gi|196231317|ref|ZP_03130176.1| response regulator receiver protein [Chthoniobacter flavus
           Ellin428]
 gi|196224653|gb|EDY19164.1| response regulator receiver protein [Chthoniobacter flavus
           Ellin428]
          Length = 127

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 71/120 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++ EDN  N  L   L+E +GY  +  +NG EAL LA   +PD+++MD+Q+ E+ 
Sbjct: 1   MSAKILLAEDNAANRYLETFLLEKAGYTVIHAQNGAEALRLALADQPDLVLMDLQMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  ++I  +  L E P++AVT+FAM  D E+  + G   YI KPI    F   I +++
Sbjct: 61  GYESARRIHAEPRLAETPIVAVTSFAMTRDREKALQFGFAGYIEKPIRPQTFAAEISQFL 120


>gi|167764205|ref|ZP_02436332.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183]
 gi|167698321|gb|EDS14900.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183]
          Length = 1317

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VED +   +L  D++    Y    TR+G+EAL     + PD+II DI +  + GL +
Sbjct: 1071 VLVVEDEKNICELLCDILFE--YTVRVTRDGIEALSEIEHNHPDIIISDIMMPNMDGLTL 1128

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++K + +   IP+I V+A A   D+    K G +AYI+KP      + TI+  +  
Sbjct: 1129 INKLKSELKTSYIPIIGVSAKASVEDQINAFKHGADAYITKPFHPKQIISTIENLLSR 1186


>gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|218778401|ref|YP_002429719.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759785|gb|ACL02251.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 319

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           +++IV+D   N+K+ +D +    Y  +  + G +ALE AR +H PD+I++DI + E+ G 
Sbjct: 6   RILIVDDERQNIKVLKDFLRDD-YKIMAAKTGEQALEAARSEHPPDLILLDIVMPEMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++ + +KED +   IP+I VT      DE +  + G   YI+KP    I    IK +I
Sbjct: 65  DLCRILKEDEKTMHIPIIFVTGLGSTNDEAKGFELGAVDYITKPFRPVIVKARIKTHI 122


>gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E        L+   G+ A     G  ALE   ++  D++++D+ L  +SG
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCRSLRSRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|312131429|ref|YP_003998769.1| transcriptional regulator, crp/fnr family [Leadbetterella
           byssophila DSM 17132]
 gi|311907975|gb|ADQ18416.1| transcriptional regulator, Crp/Fnr family [Leadbetterella
           byssophila DSM 17132]
          Length = 345

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN+   +   +++E  G+  +   NG E L+LAR+  PD+I+ DI +  + G  
Sbjct: 2   RILLIEDNQEIRENICEILELDGFDVITAANGKEGLDLARESVPDLIVCDIMMPVMDGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +   + ++ +  +IP I +TA A + D  +  + G + YI+KP      +  I+  +
Sbjct: 62  VLYFLSKEPKTADIPFIFLTAKAERLDFRKGMEMGADDYITKPFEDVELINAIRSRL 118


>gi|307824890|ref|ZP_07655112.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307733937|gb|EFO04792.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 860

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 70/118 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV+IV+D   N  +  DL+   G+  ++  +G+EALELA+   PD+I+MDI + ++ G 
Sbjct: 655 RKVLIVDDVASNRAVLVDLLSPLGFGIIEACDGIEALELAQAAIPDLILMDIVMPKMDGE 714

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+T  +++   L ++P+IA++A A   DE +  + G  A++ KP+     +  +   +
Sbjct: 715 EVTHLLRQLPALAQVPIIALSASASNADETKCLQAGANAFLPKPVDQDELLAQMAALM 772


>gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  +++    A     G E L+  ++ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|298485836|ref|ZP_07003914.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159660|gb|EFI00703.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 705

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G   L +     PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K       IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED        R  +    Y      +G EAL     ++ D++++DI L +++G+ +
Sbjct: 3   ILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIMLPKVNGIAV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K ++E S     P++ +TA     D+      G + Y++KP S       I+     
Sbjct: 63  CKALREKS--SSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRR 118


>gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1406

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60
            +KV+IV+D+  N+     ++E  G   L   NG E +E+  QH  D+  ++MDI + E+ 
Sbjct: 1285 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHD-DLSVVLMDIMMPEMD 1343

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G   T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++
Sbjct: 1344 GYATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWM 1403

Query: 121  G 121
             
Sbjct: 1404 R 1404


>gi|284037861|ref|YP_003387791.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283817154|gb|ADB38992.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1311

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN        + +  S Y  L  RNG E  E  R   PDV+I DI + ++ G  +
Sbjct: 1067 ILVVEDNIELRDFIANELSQS-YRVLTARNGQEGWEQVRSELPDVVISDIMMPDLDGYAL 1125

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T+Q+K ++    I VI +TA A +         G + Y++KP S+S   + I   +  
Sbjct: 1126 TRQLKTNTLTNHIAVILLTARASQESRMNGLMQGADDYLTKPFSISELKQRICNLLTR 1183


>gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEIHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|150866454|ref|XP_001386063.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054]
 gi|149387710|gb|ABN68034.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054]
          Length = 1118

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++ EDN +N KL   ++E  G+      NG+EA E  R+ K DV++MD+Q+  + G
Sbjct: 864 SYKILLAEDNLVNQKLAVRILEKQGHQVEVVENGLEAYEAIRKKKYDVVLMDVQMPVMGG 923

Query: 62  LEITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            E T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M
Sbjct: 924 FEATEKIRQWEKKSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLM 983

Query: 114 ETIKKYI 120
           +TI K I
Sbjct: 984 QTINKCI 990


>gi|126658801|ref|ZP_01729945.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126619899|gb|EAZ90624.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 594

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   ++  +GY      +G  AL  A+   PD+I++DI++ +I G ++
Sbjct: 13  ILIVDDKPPNLRILSTMLVKAGYKVRAVTSGNMALTAAKTMPPDIILLDIKMPDIDGYQV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K+  E  EIPVI ++A     D+ +  + G   YI KP         +  ++
Sbjct: 73  CQELKQFPETAEIPVIFLSALQDVEDKVKAFEAGGVDYIIKPFQFEEVRARVSLHL 128


>gi|325954800|ref|YP_004238460.1| two component transcriptional regulator, winged helix family
           [Weeksella virosa DSM 16922]
 gi|323437418|gb|ADX67882.1| two component transcriptional regulator, winged helix family
           [Weeksella virosa DSM 16922]
          Length = 225

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  K+++V+D    ++     +E  G+      NG+E ++ A+  KP +I+MD+ + ++
Sbjct: 1   MKHYKILLVDDEPDILEFVTYNLEKEGFEVETATNGLEGIKKAKVFKPHLILMDVMMPQM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E   ++++    ++  ++ ++A      +      G   YI KPI   I +  +K  
Sbjct: 61  DGVEACGELRKLDAFKDTLIVFLSARGEDFSQLAAYDAGANDYIVKPIKPKILVSKLKAL 120

Query: 120 I 120
           +
Sbjct: 121 L 121


>gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 245

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGIGA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 3/116 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +      +  +   GY      +G EALE     + D+I++DI +  ++G+E
Sbjct: 5   RILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMIPNLNGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + ++I++      +P+I +TA +   D+      G   Y+SKP ++   +  I+ Y
Sbjct: 65  VCRRIRQ---FSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVY 117


>gi|322417782|ref|YP_004197005.1| response regulator receiver protein [Geobacter sp. M18]
 gi|320124169|gb|ADW11729.1| response regulator receiver protein [Geobacter sp. M18]
          Length = 121

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++ V+D    +     +++  GY     R+G EALE+A + +PD+I++D+ +    G
Sbjct: 1   MKTILAVDDEPNILMSIEFILQMEGYQVHTARDGDEALEVAERVRPDLILLDVNMPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ + ++E  +L    VI +TA     + ++  + G + Y++KP +    +  ++  +
Sbjct: 61  YEVCRILRERRDLAATKVILLTAKGQALERKKGIEMGADDYVTKPFATEELLGAVRAQL 119


>gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGIT--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|219851955|ref|YP_002466387.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
           palustris E1-9c]
 gi|219546214|gb|ACL16664.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
           palustris E1-9c]
          Length = 576

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 66/117 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IVED+    +  R ++E  GY      NG +AL+L  + +PD++I D+ +  ++G +
Sbjct: 13  KVVIVEDSPTQQEYLRYILEKHGYTVFAATNGQQALDLIGEVRPDLLISDVIMPVMNGYD 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + IK D   QEIPVI +TA +   D     + G + +I+KP +    +  I++ +
Sbjct: 73  LCRAIKSDPASQEIPVILLTALSDTKDVALALQSGADNFITKPYNEEYLILRIRQIL 129


>gi|320158700|ref|YP_004191078.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319934012|gb|ADV88875.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 1370

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 74/119 (62%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV++V+D+  N+     ++E  G   +  R+G+E+L+  +++   DV++MDI + ++ G
Sbjct: 1251 KKVLLVDDDMRNVFALSSILEDKGMDIVIARDGVESLDKLKENPDIDVVLMDIMMPKMDG 1310

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I++    +++PVIA+TA AMKGD  +  + G   Y++KP++    +  ++ ++
Sbjct: 1311 YEAMEEIRKQKVYEKLPVIALTAKAMKGDRSKCIEAGASDYLAKPVNTDKLLSMLRVWL 1369



 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++I+ED+     + RD     G+  +    G   L  A+ +KP  II+DI L  I G 
Sbjct: 983  RTLLIIEDDRAFASVMRDFGRERGFKCIVAETGETGLHFAQYYKPSAIILDIGLPGIDGW 1042

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             + +++KE+ E + IPV  ++A     D     + G   Y++KP+ +    + 
Sbjct: 1043 TVMERLKENPETRHIPVHFMSANDANLD---ALRMGAIGYLTKPVDMKKLEKA 1092



 Score = 91.3 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VED+ +  +  R LI       +    G +ALE    ++ D +++D+ L++++G 
Sbjct: 1105 KRLLVVEDDAIQQESIRQLIGEDDIHIVAVPTGEKALEELESNRYDCMVLDLGLEDMTGF 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ ++I+       +P+I  T   +  +EER      E+ I K + S    ++
Sbjct: 1165 ELLERIRRSETAARVPIIVYTGRELSKEEERELNRYAESIIIKGVKSPERLLD 1217


>gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED+    KL +D +E   +  L   +G EAL L ++ + D+I++D+ L + S
Sbjct: 1   MQKRILLVEDDREINKLIKDHLEQENFKVLTAFDGEEALSLFKKEEFDLILLDLMLPKFS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I K+++E S L   PV+ ++A     D+      G + YISKPIS+      +   I
Sbjct: 61  GMDILKKVREKSLL---PVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAI 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++I+ED      + R  +E +GY      +G+E +E  R+  PD++++D+ L +I 
Sbjct: 1   MAKTILIIEDEIAIQNIVRAFLEDAGYTVYSAGDGLEGIETFRRCDPDLVLLDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + ++++S     P+I +TA      + +      + YI KP S+ + +  I+  +
Sbjct: 61  GFAVCEILRKESRT---PIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|253571534|ref|ZP_04848940.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 1_1_6]
 gi|251838742|gb|EES66827.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 1_1_6]
          Length = 1353

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN    +   + +    +  L+  NG EALE  + ++ DVI+ D+ +  + G++
Sbjct: 1104 TILIVEDNNEIRRYLNNGLADL-FNTLEAGNGEEALEKLKDNEVDVIVTDVMMPVMDGIK 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A     D+    + G + YI KP SL+I    I+  + 
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220


>gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
           29473]
 gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
           29473]
          Length = 224

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+       +  +   G+      +G+EA  L +  K  ++++D+ L  ++GLE
Sbjct: 2   RILLVEDHPELSHWLQKALTHVGFAVDVANDGIEADHLLQHEKYALVVLDVALPRLNGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++  +   +PV+ +TA     D  +    G + Y++KP  L      I+  +  +
Sbjct: 62  LLARLRKRGQT--LPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALLRRS 119


>gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|167753811|ref|ZP_02425938.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216]
 gi|167658436|gb|EDS02566.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216]
          Length = 225

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++V+D E   ++ +  +E  GY      +  +AL +    +  ++++D+ + EI
Sbjct: 1   MGKYKILVVDDEESLCEILKFNLELEGYEVDVAYSAEQALAM-HPERYSLLLLDVMMGEI 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG ++ + +K   E   +P+I  TA   + D       G + YISKP S+      ++  
Sbjct: 60  SGFKMARMLKSSPETAAVPIIFCTAKDTEDDTVAGLNLGADDYISKPFSMREVTARVRSV 119

Query: 120 IGEA 123
           +  +
Sbjct: 120 LRRS 123


>gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 234

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED+       R+ +E  G   +   +G   L+ A   + DV+++D+ L    GLE+ 
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           ++++  S   ++PVI +TA   + D     + G + Y++KP S    +  I+  +  A
Sbjct: 70  RELRSRS---DVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRA 124


>gi|153938900|ref|YP_001390952.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934796|gb|ABS40294.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319014|gb|ADF99391.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +   +     ++  G    + ++G++AL L   H   +IIMDI + ++ G++
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+E+   + IP+I ++A +   D+      G + Y++KP ++   +  +K  +  
Sbjct: 65  ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L]
 gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|34580736|ref|ZP_00142216.1| regulatory components of sensory transduction system [Rickettsia
           sibirica 246]
 gi|28262121|gb|EAA25625.1| regulatory components of sensory transduction system [Rickettsia
           sibirica 246]
          Length = 450

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 66/118 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D ELN+KL    +    Y  L   +G EAL + ++ K D+I++D+ + E+ G
Sbjct: 1   MTTILVVDDIELNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D E   IPV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  CEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 67.8 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIKKMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270


>gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 228

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED     +  +  +E  G+ A    NG  A E   Q K D++++D+ L  + G+E
Sbjct: 6   RVLIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVMLPGMDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++E   +  +P+I +TA     D       G + Y++KP ++   +  +   +  
Sbjct: 66  ICRRVRE---ISNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRR 121


>gi|294054186|ref|YP_003547844.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613519|gb|ADE53674.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 380

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 63/117 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D   N++L  +++   G   +   NG EAL ++R+ +P +I++DI +  + GL 
Sbjct: 17  RILIVDDETKNLQLVGEILRRVGMPFIFAINGEEALTVSREQQPALILLDIMMPGVDGLT 76

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + KQ+KED +   IPVI +TA     D       G   YI KP      +  ++ ++
Sbjct: 77  VCKQLKEDPQTAHIPVIFLTAATELTDVVSGFAAGGVDYIKKPFIKEELLARVRTHL 133


>gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 918

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 65/117 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN  N ++  +++   G       NG +AL+   +   DV++MD+Q+  + GL 
Sbjct: 671 RVLLVEDNAFNQQVMGEMLRDVGLQFDLAENGQDALDQLARSHYDVVLMDLQMPVMDGLT 730

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++++ +   Q +PVIA+TA   + D++R  + G   ++SKP+        + ++I
Sbjct: 731 ACERLRSNPAYQNMPVIALTANVDQSDKDRCIQAGMSDHLSKPVVPEQLYSALLRWI 787



 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   V++V+DN +N+ L   L+    G   +   + M+A+     + PD++++D  +  +
Sbjct: 1   MQFTVLVVDDNAINLSLIAQLLLKIDGVSPVSFTDAMQAIIWCESNAPDLLLVDYMMPVL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE  K+ +       +PVI VTA   +  + R  +     +I+KP+    F   ++  
Sbjct: 61  DGLEFIKRFRALPGKMMVPVIMVTAAIEREVKLRALELHANDFINKPLDTVEFTARVRNM 120

Query: 120 I 120
           +
Sbjct: 121 L 121


>gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
 gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+  ++   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
 gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
          Length = 1356

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++V+DNE N  +   ++E +  + +   NG EA++ A+ H  D+I+MD+Q+  + G+
Sbjct: 1111 KKILVVDDNEFNRLVATTILEQNEMLTITANNGEEAIQAAKDHSLDLILMDVQMPVMDGM 1170

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              TK I++D +  +IP+IA+TAFAMKGD E+    G + +++KP      +  I + +
Sbjct: 1171 MATKVIRDDLQ-SKIPIIALTAFAMKGDREKYLSHGMDDFLAKPFQEKDLLNMISRLL 1227


>gi|121603888|ref|YP_981217.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120592857|gb|ABM36296.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 336

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ SGY  L   +G  AL+ ARQ  PD++++D  +  + G E+
Sbjct: 18  VLIVDDVPDNLAVLHDALDESGYTVLVATSGEAALQRARQAVPDIVLLDAMMPGMDGFEV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121
            +++K   E   IP+I +T            + G   Y++KPI     M  +  ++    
Sbjct: 78  ARRLKAMPETAHIPIIFMTGLTETEHLVAALQAGGVDYVTKPIKPKEVMARMGVHLQGAR 137

Query: 122 EA 123
            A
Sbjct: 138 RA 139


>gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 232

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 230

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED +   +    L++  G+      +G  AL+       D+I++D+ L  +SG
Sbjct: 1   MTSVLIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAEDIDIILLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++      +PVI VTA   + D+    + G + Y++KP      +  I+  + 
Sbjct: 61  TEVCRQLRQ---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 228

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I++D+    +L  D + T G       NG +    A +H  D++I+D+ L  ++G
Sbjct: 1   MEKILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDGARQAVEH-YDLVILDVMLPGMNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +Q+++ SE   +PV+ +TA     D     + G + Y+ KP +    +  I+    
Sbjct: 60  FDVLRQVRQSSE---VPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 225

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED         D +   GY     R+G+ A    R+   D+I++D+ L    G
Sbjct: 1   MIRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++      + P++ +TA A + ++    + G + Y++KP         IK  + 
Sbjct: 61  LEVCRELRRAGL--KTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 237

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +   +     ++  GY  +   NG +AL+ A     D I++D+ L +++G
Sbjct: 1   MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +++++    +  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  LEIARRVRQS---KATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
 gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
          Length = 242

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+   ++     +E  G+      NG EALE+   +   + I+D+ + ++ G+E+
Sbjct: 16  ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E   L   P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREKYSL---PIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+    KL    ++   Y  L   NG  A+  A  H PD++++D+ L ++ G+EI
Sbjct: 6   ILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHNPDIVLLDLGLPDMDGVEI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            ++I+       +P+I ++A +   D+      G + Y++KP S+   +  ++
Sbjct: 66  IRKIRA---WSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLR 115


>gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 245

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGIGA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|91774040|ref|YP_566732.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713055|gb|ABE52982.1| Multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 492

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D  LN++L    +    Y  +    G+E LE       D+I++DI + ++SG E
Sbjct: 8   KILVVDDEPLNVELMEIYLSPD-YEIISAYGGVEGLEKVATENVDLILLDIMMPDVSGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +K D   Q IP+I VTA + K D+ R  + G + ++SKP+        ++  + 
Sbjct: 67  VCESLKADPRYQLIPIIMVTALSGKDDKIRSIEAGADDFLSKPVDRLELATRVRSLLR 124


>gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 982

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN  N ++   +I+  G       NG EAL+L      D+++MD+Q+  + G E
Sbjct: 726 RILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLATTPYDLVLMDVQMPVMDGFE 785

Query: 64  ITKQIK--EDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+      L   IPVIA+TA AMKGD  +    G   Y++KPI      E + K++
Sbjct: 786 ATRHIRDVRSPVLNHEIPVIALTAHAMKGDRRKCLDAGMNDYLAKPIFPDALAEMLVKWL 845

Query: 121 GE 122
             
Sbjct: 846 PR 847


>gi|154247782|ref|YP_001418740.1| response regulator receiver protein [Xanthobacter autotrophicus
           Py2]
 gi|154161867|gb|ABS69083.1| response regulator receiver protein [Xanthobacter autotrophicus
           Py2]
          Length = 124

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/121 (67%), Positives = 106/121 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K VMIVEDNELNMKLF DL+E  GY  ++TR+G+EA+ELAR H+PD+IIMDIQL EIS
Sbjct: 3   MAKTVMIVEDNELNMKLFHDLLEAHGYRTVETRSGVEAVELARAHRPDLIIMDIQLPEIS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T+++K D EL+ IPV+AVTAFAMKGDEERIR GGCEAY+SKPIS++ F++T++++ 
Sbjct: 63  GLDVTRKLKADPELKAIPVVAVTAFAMKGDEERIRAGGCEAYLSKPISVAKFLQTVRQFA 122

Query: 121 G 121
           G
Sbjct: 123 G 123


>gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E   +    +++  GY A     G E ++   +   D++++D+ L  +SG
Sbjct: 1   MTRILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGADLVLLDVMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ ++++  S    +P+I +TA   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  VDVCRELRSRS---SVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|300867936|ref|ZP_07112576.1| response regulator receiver modulated serine phosphatase
           [Oscillatoria sp. PCC 6506]
 gi|300334073|emb|CBN57754.1| response regulator receiver modulated serine phosphatase
           [Oscillatoria sp. PCC 6506]
          Length = 377

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 59/117 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D+    +L R  ++  GY      NG + +  A+Q +P +II D  +  ++G+E+
Sbjct: 4   ILVIDDDTAVQELLRRTLKKQGYEVTVASNGEDGITQAQQLRPALIICDWIMPRLTGIEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +++K + +L       +T+     D  +    G + +ISKPI L+     ++  + 
Sbjct: 64  CRRVKANPDLSTTQFFLLTSLGSVADRVKGLDAGADDFISKPIELNELQARVRAGLR 120


>gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8]
 gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8]
          Length = 224

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+    +L    ++ +GY      +G+EAL++  +   D+II DI +  + G E+
Sbjct: 4   ILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTNIDLIISDIMMPNMDGYEL 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           T+Q++      +IP+I VTA     D++     G + Y+ KPI ++  +  +   +  +
Sbjct: 64  TRQLRNADF--QIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKRS 120


>gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 228

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++I+ED +   +  +  +E  GY      +G E L  A     D+II+D+ L  + 
Sbjct: 1   MGENILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENYDLIILDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I++ S    IPVI ++A     D+      G + Y++KP S+   M  I+  +
Sbjct: 61  GFSVLKEIRKKS---SIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNAL 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1162

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +K+++ +D+  N+     L+   G   +   +G EALE   +H    +++MDI + E+ G
Sbjct: 1043 QKILLADDDMRNVFSLSALLGEQGIDVITAADGKEALERLEEHNDIRLVLMDIMMPEMDG 1102

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+     + +PVIA+TA AM GD E+    G   YI+KPI  S  +  ++ ++
Sbjct: 1103 YEAMRRIRAIGRYKSLPVIALTAKAMAGDREKCIAAGASDYIAKPIDSSKLLSLMRVWM 1161



 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 21/130 (16%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I+ED+     + RD     GY  +   NG + L  AR++ P  I++D+ L  I G  I
Sbjct: 780 VLIIEDDISFATILRDFAREKGYKTIVALNGNDGLFFARKYLPAAILLDMTLPLIDGNSI 839

Query: 65  TKQIKEDSELQEIPVIAVTA---FAMKGDEERIRKGGCEAYISKPISL-----------S 110
            K +K + +LQ I +  ++A        D+          Y  KP+ +            
Sbjct: 840 LKILKSNEDLQHILIHVISAGEISLQVRDKVEG-------YTQKPLQVTDMESVFTGISD 892

Query: 111 IFMETIKKYI 120
                 KK +
Sbjct: 893 RLQARFKKVL 902


>gi|256424531|ref|YP_003125184.1| Crp/Fnr family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039439|gb|ACU62983.1| transcriptional regulator, Crp/Fnr family [Chitinophaga pinensis
           DSM 2588]
          Length = 352

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 69/122 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++++EDN+   +   +++E + Y  L   NG   +E+A +  PD+I+ DI +  + G
Sbjct: 1   MKTILLIEDNDDIRENTAEILELANYRVLTAENGKTGVEMALEELPDLIVCDIMMPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +   +++  E+++ P I +TA + +GD  +  + G + YI+KP S +  +  ++  + 
Sbjct: 61  YGVLHLLQKHPEVEDTPFIFLTAKSERGDFRKGMEMGADDYITKPFSGTDLLNAVESRLK 120

Query: 122 EA 123
           ++
Sbjct: 121 KS 122


>gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
          Length = 234

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED     +  +  +++  Y  ++  NG E LE  + +   + I+DI +  + 
Sbjct: 1   MKHTLLLVEDELGIRETVKIFLKSQNYEVIEAENGKEGLEALKHNDIHLAIVDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL +T +++E   + +IPVI +TA     D+      G + YI+KP      +  +   +
Sbjct: 61  GLTMTMKLRE---VSDIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|239817228|ref|YP_002946138.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239803805|gb|ACS20872.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED      + +D +  +GY      +G  AL+      P++ ++DI L  + G
Sbjct: 1   MTRIVIVEDELDIASVVQDYLRHAGYETTHFADGQSALDHLIATPPELTLLDIMLPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++ +E +     P+I +TA   + D     + G + Y+ KP S    +  ++  + 
Sbjct: 61  IEVLRRAREHTSH---PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|153933899|ref|YP_001383953.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937109|ref|YP_001387498.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226948941|ref|YP_002804032.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152929943|gb|ABS35443.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933023|gb|ABS38522.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226842658|gb|ACO85324.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +   +     ++  G    + ++G++AL L   H   +IIMDI + ++ G++
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+E+   + IP+I ++A +   D+      G + Y++KP ++   +  +K  +  
Sbjct: 65  ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|149277598|ref|ZP_01883739.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Pedobacter sp. BAL39]
 gi|149231831|gb|EDM37209.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Pedobacter sp. BAL39]
          Length = 1363

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVED      L R+++    YI  +  NG  AL+  ++  P +II D+ + ++ GLE+
Sbjct: 1108 VLIVEDEPELRFLIRNVL-KEHYIIYEAGNGRAALQFLQKTVPSLIISDVMMPDMDGLEL 1166

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K+   L +IP + ++A   +  +    + G +AYI KP  ++     I+K +
Sbjct: 1167 CRAVKQTPALAQIPFVILSARGTEDHKTEGYEVGADAYIPKPFQINYLQVRIRKLL 1222


>gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
 gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
          Length = 228

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    ++   Y   +     EAL    +   D+ I+DI +  I G  +
Sbjct: 3   ILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGLDLAILDIMMPHIDGFTV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E       PVI +TA   + D+      G + YI+KP      +  +K  +  
Sbjct: 63  LQKIRE---TYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRR 117


>gi|27366816|ref|NP_762343.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27358383|gb|AAO07333.1|AE016809_95 Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 1370

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 74/119 (62%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV++V+D+  N+     ++E  G   +  R+G+E+L+  +++   DV++MDI + ++ G
Sbjct: 1251 KKVLLVDDDMRNVFALSSILEDKGMDIVIARDGVESLDKLKENPDIDVVLMDIMMPKMDG 1310

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I++    +++PVIA+TA AMKGD  +  + G   Y++KP++    +  ++ ++
Sbjct: 1311 YEAMEEIRKQKVYEKLPVIALTAKAMKGDRSKCIEAGASDYLAKPVNTDKLLSMLRVWL 1369



 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++I+ED+     + RD     G+  +    G   L  A+ +KP  II+DI L  I G 
Sbjct: 983  RTLLIIEDDRAFASVMRDFGRERGFKCIVAETGETGLHFAQYYKPSAIILDIGLPGIDGW 1042

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             + +++KE+ E + IPV  ++A     D     + G   Y++KP+ +    + 
Sbjct: 1043 TVMERLKENPETRHIPVHFMSANDANLD---ALRMGAIGYLTKPVDMKKLEKA 1092



 Score = 91.3 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VED+ +  +  R LI       +    G +ALE    ++ D +++D+ L++++G 
Sbjct: 1105 KRLLVVEDDAIQQESIRQLIGEDDIHIVAVPTGEKALEELESNRYDCMVLDLGLEDMTGF 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ ++I+       +P+I  T   +  +EER      E+ I K + S    ++
Sbjct: 1165 ELLERIRRSETAARVPIIVYTGRELSKEEERELNRYAESIIIKGVKSPERLLD 1217


>gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
 gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
          Length = 247

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +   G+      +G  A+        D +++D+ L  I G E
Sbjct: 18  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++        PV+ +TA     D      GG + Y++KP +L      ++     
Sbjct: 78  VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 134


>gi|83310939|ref|YP_421203.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945780|dbj|BAE50644.1| Response regulator containing a CheY-like receiver domain and an
           HD-GYP domain [Magnetospirillum magneticum AMB-1]
          Length = 393

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 10/129 (7%)

Query: 1   ML--------KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVII 51
           M+          +++V+D   N+ +   L++   Y      +G +AL++A  +  PD+I+
Sbjct: 1   MMDASDVIERATILVVDDTPDNLAVLSSLLKDE-YRVKVASSGEKALKVAMAETSPDLIL 59

Query: 52  MDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           +DI +  + G E+ +++K +     IPVI +TA A    E+     G   YI+KPIS  I
Sbjct: 60  LDIMMPGLDGYEVCRRLKAEPRTHHIPVIFLTAKAEVDAEKTGLDLGAVDYITKPISPPI 119

Query: 112 FMETIKKYI 120
            +  +K ++
Sbjct: 120 VLARVKTHL 128


>gi|302554553|ref|ZP_07306895.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302472171|gb|EFL35264.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1824

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G
Sbjct: 1703 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1762

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  + +++ 
Sbjct: 1763 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMDQWMR 1822


>gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I ED++  + L +  +E   +  L   NG EALE+   ++  + I+DI + +++
Sbjct: 1   MNYKILIAEDDKDIIDLLKLYLENEKFQVLSAINGEEALEIVENNEIHLAILDIMMPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+TK+I+E   +  +P++ ++A  +  D+      G + Y++KP +    +  +K  I
Sbjct: 61  GFELTKKIRE---ISNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|261368040|ref|ZP_05980923.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
           15176]
 gi|282570028|gb|EFB75563.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
           15176]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60
           +K+V++VED     ++    ++ +G+  L+  +   ALEL  + +P D  ++DI L  + 
Sbjct: 1   MKRVLVVEDEASIREMVALNLKMAGWEVLEAPSAERALELMHKSEPCDAALLDIMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+ D    +I +I V+A   + D+ R    G + YI+KP S+S  +  ++   
Sbjct: 61  GLSLCETIRRDDN--DIGIIIVSAKGQESDKIRGLSIGADDYITKPFSVSELVARLEALT 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41]
 gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    ++   Y   +  +  EAL    +   D+ I+DI + EI G  I
Sbjct: 15  ILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGLDLAILDIMMPEIDGFTI 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E       PVI +TA   + D+      G + YI+KP      +  +K  +  
Sbjct: 75  LQKIRE---TYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRR 129


>gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D+     L +  ++  GY       G E L+  R  +P ++I+D+ L ++SG
Sbjct: 1   MLRILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVILDLNLPDVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +Q+++++    + V+ +T+     D+ +  + G + Y++KP SL      ++  + 
Sbjct: 61  YDLCQQMQKETG---VYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|15614110|ref|NP_242413.1| hypothetical protein BH1547 [Bacillus halodurans C-125]
 gi|10174164|dbj|BAB05266.1| BH1547 [Bacillus halodurans C-125]
          Length = 661

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 64/116 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D  +N+K+   ++    Y      +G EA+ +    + D+++ D+ + ++SG E
Sbjct: 331 RILVVDDEPVNLKVIASILANEAYEVKTVISGEEAIAVLDTKEWDLVVADVMMPKMSGYE 390

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +TK I++   L E+P++ +TA +   D E   + G   Y++KP++L      IK  
Sbjct: 391 LTKNIRQRFTLTELPILLITARSRPEDIENGFRAGANDYLTKPVNLLELRARIKAL 446


>gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1305

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VED  +N K+   L++  GY A    NG+EALE  ++   DVI MD+Q+ E+ GLE
Sbjct: 1024 RILLVEDIAVNQKIALQLLQRLGYRADVANNGLEALEALQRQVYDVIFMDVQMPEMDGLE 1083

Query: 64   ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T+ I++D +L   P +IA+TA A   D +     G   YISKP+ L    + +++Y
Sbjct: 1084 TTQHIRQDLQLSTQPWIIAMTAHARAEDRQACLHIGMNDYISKPLRLETLRQVLEQY 1140



 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 11  NELNMKLFRDLIETSGYIALQTRNGMEAL-ELARQHKPDVIIMDIQLQEISGLEITKQIK 69
           N    +     ++  G            L EL RQ+  D+ I+DI L      ++  QI 
Sbjct: 877 NASLRRSLTLQMQGLGLQVQTADGVGTVLHELHRQNHFDLAILDIDLPGFQPAQLASQIH 936

Query: 70  EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
              +   +P++ ++A      E +       A+++KP+       T+
Sbjct: 937 GIPDHCCLPLVMLSAKGKSALEIKQVSTEFSAFLNKPVRHYQLTNTL 983


>gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 250

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-------KPDVIIMDIQL 56
           +++IVED E+   +    +E  GY AL   +G  ALEL +         + D++++D+ L
Sbjct: 20  RILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +ISGL+I + ++    +  IP++ ++A A + D     + G + Y++KP S+   +   
Sbjct: 80  PQISGLDICRLLRYHGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  I  
Sbjct: 138 RALIRR 143


>gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ykoG
 gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis]
 gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 228

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED E   ++ +  +E  GY      NG E L+ A +    ++++D+ L  +SGLE
Sbjct: 5   HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++     + PVI +TA     D+      G   Y++KP  +   +  I+  + +
Sbjct: 65  VLRRLRKTD--SQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ 121


>gi|256829422|ref|YP_003158150.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
 gi|256578598|gb|ACU89734.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
          Length = 1131

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 4/124 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED+E+ +   R L+  +GY     R G EA+ L R+    +++MD+Q+  + G+E
Sbjct: 1005 RILLAEDDEVTIFATRALLTRAGYEVSVARTGHEAVSLLREQDFGLVLMDVQMPGMDGVE 1064

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ I+ D  L   + IP+IA+TAFAM G++E     G + Y++KP+ +      I   +
Sbjct: 1065 ATRIIRSDPGLGDKRSIPIIALTAFAMDGEKEIFLAAGMDGYVAKPVGMKDLTRAIDAVL 1124

Query: 121  -GEA 123
             G A
Sbjct: 1125 SGRA 1128


>gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 957

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ ED  +N      +I   G+  +   NG + L L  + + D I+MDIQ+  + G E
Sbjct: 832 RVLLAEDEPINALAASRMINRDGHEVIVAENGRQVLNLLEEREFDCILMDIQMPVMDGEE 891

Query: 64  ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T+ I+   +    IP+IA+TA++M GD E+    G   Y+SKP  +     T ++
Sbjct: 892 TTRAIRSSGKAYASIPIIALTAYSMSGDREKFLTAGMNDYLSKPFKIEELRRTFRR 947


>gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLE 63
           + +VED+    +L    ++++G+ A    NG E L+      KP+++++DI L    G+ 
Sbjct: 2   IFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I  ++++ S  +++P+I +TA   + D+      G + YI+KP  +   +  +K  +  +
Sbjct: 62  ILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRRS 121


>gi|121593459|ref|YP_985355.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax sp. JS42]
 gi|120605539|gb|ABM41279.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax sp. JS42]
          Length = 377

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
             V++V+D   N+ L   L++   Y      +G +AL +A+    PD++++DI +  I G
Sbjct: 20  ATVLVVDDTPDNLTLMAGLLQGL-YRVKVAASGEKALVIAQSDAPPDLLLLDIMMPGIDG 78

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++K +   + IPVI +TA +   DE      G   YI+KPIS SI +  +  ++
Sbjct: 79  YEVCRRLKANEATRHIPVIFLTARSDPDDEREGLALGAVDYITKPISPSILLARVATHL 137


>gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1238

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL+       D ++MDIQ+  + GL  
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E     ++P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1174 ARALRERFSADDLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229



 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  L+    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 968  RTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMIPEMDGSD 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  L + P +I +TA+A +  +  +      A + KP   S   + I
Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084


>gi|319442833|ref|ZP_07991989.1| two-component system response regulator MtrA [Corynebacterium
           variabile DSM 44702]
          Length = 224

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   +++  G+  +   +G EA+E AR   PD+I++D+ L  ++
Sbjct: 1   MAAKILVVDDDPAISEMLTMVLQGEGFSTVTVGDGAEAVEAARTQHPDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           G+++ + ++   +   +P++ +TA     D     + G + Y+ KP     
Sbjct: 61  GVDVCRAVR---DFSAVPIVMLTAKTDTVDVVLGLESGADDYVPKPFKPKE 108


>gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101]
          Length = 234

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED++   +   + +E  G+      NG  A +L  +   D++++D+ L  I+G
Sbjct: 10  MARLLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSYDLVVLDLMLPGING 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ +Q+++ S      ++ V+A   + D     + G + Y+ KP  +   +   +  + 
Sbjct: 70  LDLCRQLRQGSTPPL--ILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRALLR 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M ++  +++V+D     +     +  +G+      N  EA      +  D++I+DI +  
Sbjct: 1   MSERPHLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARMRLNANAIDLVILDIMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL + + I+E     EIPVI +TA + + D     + G + Y+ KP S    +  IK 
Sbjct: 61  EDGLSLCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKV 117

Query: 119 YIGE 122
               
Sbjct: 118 IFRR 121


>gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 318

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 61/119 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ SG+I L   +G+ ALE      PD+I++D  +  I G E 
Sbjct: 11  VLIVDDMPDNLAMLSDALDDSGHIVLVATDGLSALERLDHITPDLILLDAMMPGIDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++IK+   +  +PV+ +T  +      R  + G   Y++KPI     +  I  +I  A
Sbjct: 71  CRRIKQVRRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIRTA 129


>gi|291571152|dbj|BAI93424.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 917

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 64/118 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E N +L    +   G+   +  NG EA+ +  Q +P +I MD+++  + G E
Sbjct: 710 RILVVDDRESNRQLLVKFLSPLGFEVQEAENGQEAIAIWNQWEPHLIWMDMRMPVMDGYE 769

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T QIK   + Q   +IA+TA A + +   +   GC+ ++ KP    I  E + K++G
Sbjct: 770 ATTQIKSYLKGQATVIIALTASAFEEERAVVLSAGCDDFVRKPFEEQILFEKMAKHLG 827


>gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +   KL    ++  GY  LQ  +G E L +  +++  ++++DI + ++ G+ 
Sbjct: 11  TILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEVHLVVLDIMMPKVDGIH 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 71  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 126


>gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 66  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123


>gi|220906815|ref|YP_002482126.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219863426|gb|ACL43765.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
          Length = 584

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I++D+  N  +    +   GY      +G  A+    + KPD+I++D+ + +++G
Sbjct: 13  MSSILIIDDDPDNFDVIDTFLAQQGYHLYYASSGRTAIADLDKFKPDLILLDVMMPDMTG 72

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + IK   E Q +P+I VTA A K +       G + +I KP+     +  ++  + 
Sbjct: 73  IEVCRWIKTMPEWQAVPIIMVTALATKKNLAECFAAGADDFICKPLDSLELIARVRSMLR 132


>gi|167755291|ref|ZP_02427418.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402]
 gi|167704230|gb|EDS18809.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402]
          Length = 228

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +   +L +  +  +GY      +G  A+EL   ++ D+I++DI L EI+G
Sbjct: 11  MNKILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYNQFDLILLDIMLPEING 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+       IPVI +TA     D  +  K G E YI KP  +   +  ++  + 
Sbjct: 71  YELMEYIRPLE----IPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVLR 126

Query: 122 E 122
            
Sbjct: 127 R 127


>gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
 gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
          Length = 227

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED E   +     +   GY  ++  +G   L+LA     D+I++D+ L  ++
Sbjct: 1   MSRKILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHADLIVLDVMLPRLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+++     +P++ +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  GLEVLRRIRKEGN--NVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVAL 118

Query: 121 GE 122
             
Sbjct: 119 KR 120


>gi|148240129|ref|YP_001225516.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848668|emb|CAK24219.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 235

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IV+D+   ++   + +   G +      G EAL L RQ + D++++D  L + +G+EI 
Sbjct: 10  LIVDDDPKLLQFLLEELSQDGIVCQGANCGAEALLLLRQQRFDLVVLDWNLPDFNGIEIC 69

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           ++++   +    PV+ +TA     D  +    G + YI+KP  L      ++  +  +
Sbjct: 70  RRLRSSGDT--TPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRS 125


>gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1829

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1709 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1768

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++ 
Sbjct: 1769 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWMR 1827


>gi|120555598|ref|YP_959949.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120325447|gb|ABM19762.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 784

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  L R L+E  G   +   +G  A  L + H+ DV+ MD  +  + G E
Sbjct: 659 RVLLVEDNPVNRTLTRRLLEKLGCEVMTANDGQAASSLWQWHQFDVVFMDCVMPRMDGYE 718

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+Q++    +     +PV+A+TA AM+ DEER R+ G +++++KP++L +    +++Y
Sbjct: 719 ATRQLRAWETNHGRSRVPVVALTASAMEEDEERCRQAGMDSFVAKPVNLEMLRAVLEQY 777



 Score = 80.2 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57
           ++V++V+  EL+ K+  +++          R+  EAL   RQ        D  I+D  + 
Sbjct: 502 RRVLVVDSYELSRKITLEMLSRYDVHIDAVRSAGEALTALRQAFDAGIPYDATILDGFVP 561

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++    + +Q++ + +  E+ ++ +++   +GD E  R+ G +A++SK +  S  +  + 
Sbjct: 562 DMDADLLCRQVRSNPQWAEMRLLILSSNPQRGDAEHFRQAGADAFLSKSLRESYLIPILN 621

Query: 118 KY 119
           + 
Sbjct: 622 QL 623


>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1135

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++++ ED+  N KL   L+E  G+  +   NG+EA+E  R    D+I+MD+Q+ E+ G
Sbjct: 818 SRRILLAEDSLANQKLALGLLERWGHRVVVASNGIEAIERYRSESFDLILMDVQMPELDG 877

Query: 62  LEITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E T  I+E      + IP++A+TA A++GD E+  K G + Y+ KPI      + I++ 
Sbjct: 878 NEATMAIREIERRTGEHIPIVAMTAHALQGDREQCLKAGMDDYLMKPIRARQLFQMIEQV 937



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           +V+IV+DN+ N ++  +L    G         +EA    +          +II D Q+  
Sbjct: 675 RVLIVDDNQTNRRILEELTLLWGMRPRIAAGAIEARRELQHAIDQGEPIRLIITDAQMPG 734

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G  +T  I+    +  + ++ +T+     D  R ++ G   Y+ KP+  S    +I  
Sbjct: 735 EDGFSLTASIRSLENMPAVEILMLTSGDRLEDLSRCQQLGIAGYLIKPVKQSELYNSIVG 794

Query: 119 YIGEA 123
            +G+A
Sbjct: 795 IMGQA 799



 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVE      +  R  +  +GY      +  + L  A Q +P ++++  +      
Sbjct: 1   MPRILIVEPRPSFREGLRQTLVDAGYEIET-LDIDQDLPAAIQIRPALVVLGCEA----- 54

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE 100
           +E    IK       +PV+ +      G   +   G  +
Sbjct: 55  IEFLPLIKSQ-CTPPVPVLLLIKAGELGLILKAVDGAAD 92


>gi|261418620|ref|YP_003252302.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765436|ref|YP_004130937.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375077|gb|ACX77820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110302|gb|ADU92794.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 232

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+E      +  +E   Y      +G EAL++      D+II+DI ++ I G+
Sbjct: 4   KKILVVDDDEDICLTIKQYLELHHYQVETVHSGAEALKMI-SGDVDLIILDIMMEGIDGM 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I++     + P++ V+A  ++ D+ +    G + YI+KP SL      I  ++  
Sbjct: 63  ELCRMIRDRV---DCPILFVSAKTLEEDKVQALSIGGDDYITKPFSLKELKARIDSHLRR 119


>gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 221

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D         D ++ SGY  +   NG +ALE+  +++P ++I DI + E+ 
Sbjct: 1   MPLTILIVDDEPGISLSVSDYLQLSGYSVVTAANGKQALEMLNRYQPHLLITDIVMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +Q+++    + +PVI +T      +  R  + GC+ Y+SKP  L      ++  +
Sbjct: 61  GYDLVRQVRQQPAFRLLPVIFLTGRNKTKERIRGYQSGCDVYLSKPFELEELGAVVRNLL 120

Query: 121 GE 122
             
Sbjct: 121 DR 122


>gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 220

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     ++ RD +    Y      +G  AL   R  + D+II+D+ L ++ GL +
Sbjct: 3   ILIVEDEIDLGEILRDYLNAENYTTELVGDGESALARIRNGQWDLIILDLMLPKLDGLSV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++++ S+   +P+I  TA   + D     + G + YI KP S    +  +K  +  +
Sbjct: 63  CREVRKQSQ---VPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREVVARVKAVLRRS 118


>gi|218437187|ref|YP_002375516.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218169915|gb|ACK68648.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 322

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 68/116 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L  ++++  GY      +G +ALE  +   PD+I++D+ + E++GL++
Sbjct: 18  ILIVDDISKNLQLVVEILDEVGYATTFAISGKQALERVKIAHPDLILLDLMMPEMNGLQV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D+   EIP+I +TA   + D  +  K G   Y++KP      +  +K ++
Sbjct: 78  CEKLKSDANYAEIPIIFLTASDEQEDLLQAFKMGAVDYVTKPFKSGELLARVKTHL 133


>gi|153870044|ref|ZP_01999525.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073489|gb|EDN70474.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 225

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 68/116 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   ++   GY    T +G  AL+  +   PD+I++DIQ+ E++G E+
Sbjct: 20  ILIVDDMPANLQILNQILTEQGYKVRPTVSGKMALKSVQSVIPDLILLDIQMPEMNGYEV 79

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D+++ EIPVI ++A +   D+ +    G   YI+KP      +  +K ++
Sbjct: 80  CEKLKADNKIAEIPVIFISALSDVFDKVKAFSVGGVDYITKPFQAEEVLARVKTHL 135


>gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1622

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 65/117 (55%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDNELN  +  +L+  +G+I     +G  AL+     + DV++MD+Q+  + G   
Sbjct: 1267 VLLVEDNELNQLVAVELLRGAGFIVDVAAHGQAALDCVAHTEYDVVLMDMQMPVMDGETA 1326

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T++++ D     +P+IA+TA AM+ D  R    G   ++ KPI   +    + +++ 
Sbjct: 1327 TRRLRADPRHARLPIIAMTANAMEADRRRCFDAGMNDHVPKPIEPGVLWRALARWVR 1383



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
            +V+IV+DN     +  +++ + G+   ++  G +AL++ R          ++++D ++  
Sbjct: 1118 RVLIVDDNHTAAAVLSEMLRSMGFETRESHAGAQALDMLRDAAADGEPYGLLLIDWRMPG 1177

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            + G+E+ ++I E    Q   ++ VTA+         R+ G E  + KP+S S+  +T+ +
Sbjct: 1178 MDGIELARRIHELGLDQAPQMLMVTAYGRDEIMPAAREQGIETVLVKPVSASLLYDTLAQ 1237


>gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
 gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
          Length = 251

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + K+++V+D      L    +  +GY  +   NG  A+      +PD+IIMD+ L ++
Sbjct: 25  MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 84

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG   TK+++E       PVI ++A     D+      G + Y++KP SL   +  +   
Sbjct: 85  SGFAATKRLREAGF--RCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAI 142

Query: 120 IGE 122
           +  
Sbjct: 143 LRR 145


>gi|148257503|ref|YP_001242088.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146409676|gb|ABQ38182.1| putative sensor histidine kinase with multiple PAS/PAC and a
           response regulator receiver domain [Bradyrhizobium sp.
           BTAi1]
          Length = 1202

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN       R L+E   Y      +G  AL    + KPD+++ D+ +  I G+
Sbjct: 612 ARILLADDNADMRDYVRRLLEAR-YEVETVGDGEAALAAMARAKPDLVLSDVMMPRIDGM 670

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++  +++ D ++  +P+I ++A A +       + G + Y+ KP S S  +  ++ ++
Sbjct: 671 QLLARVRADPKVSTVPIILLSARAGEESRVEGMQAGADDYLIKPFSASELLARVEAHL 728


>gi|332285264|ref|YP_004417175.1| two component response regulator [Pusillimonas sp. T7-7]
 gi|330429217|gb|AEC20551.1| two component response regulator [Pusillimonas sp. T7-7]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+    +L  D +    Y  L   +  +     +++ PD+I++D  + +  G E
Sbjct: 7   KVLVVDDDPALRQLLADYLNRHNYDTLLAPDASDLPARIQRYSPDLIVLDRMMPDGDGAE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++++  E  +IPVI +TA     D     + G + Y+ KP      +  I+  +  
Sbjct: 67  ACRRLRQQGE--DIPVILLTARDETVDRVIGLEAGADDYLGKPFDPRELLARIEAVLRR 123


>gi|329896463|ref|ZP_08271541.1| putative two-component response regulatory protein [gamma
           proteobacterium IMCC3088]
 gi|328921781|gb|EGG29153.1| putative two-component response regulatory protein [gamma
           proteobacterium IMCC3088]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + I+ED+    +L  D +  +G+      +G EAL LA     D+ ++D+ L +  G
Sbjct: 1   MSSIAIIEDDPKIARLLADYLTQAGFDTATAHSGQEALSLATSQHFDLFLLDVMLPDGDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + KQ++        P++ +TA   + D     + G + YI KP S    +  +K  + 
Sbjct: 61  FSVCKQLR---LFSSAPILFLTARIAEEDRLLGLELGGDDYIVKPFSPREVVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 248

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D ++   L    +   G+       G+ A+  A++  PDVI++DI L +  GLE
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++    L  +PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 78  VMRRVR--GHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135


>gi|317475905|ref|ZP_07935161.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316907938|gb|EFV29636.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1362

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VED +      +  +    Y      NG EA +L  +  PD++I D+ + E+ GL 
Sbjct: 1111 RVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDTPDLVISDVMMPEMDGLT 1169

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK+++ +  +PVI +TA +   D     + G +AY+ KP +  +  +TI   I
Sbjct: 1170 LCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKTIANLI 1226


>gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 982

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN  N ++   +I+  G       NG EAL+L      D+++MD+Q+  + G E
Sbjct: 726 RILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLATTPYDLVLMDVQMPVMDGFE 785

Query: 64  ITKQIK--EDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+      L   IPVIA+TA AMKGD  +    G   Y++KPI      E + K++
Sbjct: 786 ATRHIRDVRSPVLNHEIPVIALTAHAMKGDRRKCLDAGMNDYLAKPIFPDALAEMLVKWL 845

Query: 121 GE 122
             
Sbjct: 846 PR 847


>gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY     ++G  AL+   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++       IP++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRAGGHT--IPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|229543484|ref|ZP_04432544.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
 gi|229327904|gb|EEN93579.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
          Length = 921

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           K V+I +D+  N+   +  +   G   L ++NG E L++   HK  D+++MDI +  + G
Sbjct: 800 KTVLICDDDNRNIYALKKALSKEGMKVLVSQNGFECLDMLDLHKEVDIVLMDIMMPGMDG 859

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  ++I+++    ++P+IA+TA AMKGD ++    G   YISKP+ +   +  ++ ++
Sbjct: 860 YETMQRIRKNDAFADLPIIALTAKAMKGDRQKCLDAGATDYISKPLKMDQLLSVMRVWL 918


>gi|29346142|ref|NP_809645.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338037|gb|AAO75839.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 231

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K    V++VED      + +D +E +G+      +G E L L  + +PDV++ D+ + 
Sbjct: 1   MSKNDITVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFFELRPDVLVADVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ G E+ ++I++    ++ PV+ +TA +   D     + G   Y+ KP  +   +  IK
Sbjct: 61  KMDGFEMVRRIRQTD--KQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIK 118

Query: 118 KYIGEA 123
             +G+A
Sbjct: 119 ALMGKA 124


>gi|150391003|ref|YP_001321052.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Alkaliphilus metalliredigens QYMF]
 gi|149950865|gb|ABR49393.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Alkaliphilus metalliredigens QYMF]
          Length = 449

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D +      +  ++T  Y   +  NG E +E  ++ +PD++++D+++  + G
Sbjct: 1   MNKILIVDDEKNMRWAMKKALKTEDYQVFEAANGQEGVEKFQELQPDLVLLDLKMPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE  +++K   E   IPVI +TA           K G   YISKP  +      I K +
Sbjct: 61  LEALQKMKGIDE--HIPVIMITAHGTTESAVEAMKLGAIDYISKPFDIEELKIVIHKAL 117


>gi|326800045|ref|YP_004317864.1| AraC family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326550809|gb|ADZ79194.1| two component transcriptional regulator, AraC family
            [Sphingobacterium sp. 21]
          Length = 1349

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++V+D+    +  R  +  + Y+     NG +A +      PD++I D+ +  + G+
Sbjct: 1097 KRILVVDDDIDIREFLRRELSPA-YLVNTYANGEDAYKSMLNAVPDLVISDVMMPIMDGM 1155

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K+I+E+     +P++ +TA      + +    G + YI KP ++ +  E IK  + 
Sbjct: 1156 ILCKKIRENPLTHHVPIVLLTAKGEDNHQLQGLGLGADLYIVKPFNMDVLTENIKSLLR 1214


>gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  A+  AR  +PD +I+D+ L ++ GL 
Sbjct: 21  RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVMLPDMDGLA 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   EL ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 81  VLGRLRR--ELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 138


>gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 242

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|182416578|ref|ZP_02947999.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667380|ref|ZP_04527364.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379575|gb|EDT77058.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655728|gb|EEP53284.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 232

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED++   +L +D +E +G+ A     G+  LE A   + D+I++D+ L    G
Sbjct: 1   MKKILIVEDDKSIAELEQDYLEINGFKAEIALTGVSGLEKAINKEYDLILLDVMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++I++   ++EIP++ VTA        R    G + YI KP S S  +  +  ++ 
Sbjct: 61  FEICQEIRK---VKEIPILLVTAKKDDIYIIRGLGIGADDYIVKPFSPSELVARVTAHMN 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  IK     
Sbjct: 61  LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARR 117


>gi|150003189|ref|YP_001297933.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|254882475|ref|ZP_05255185.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319640424|ref|ZP_07995146.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|149931613|gb|ABR38311.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|254835268|gb|EET15577.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317387911|gb|EFV68768.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1386

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   L+    Y  L+  NG EALE+  + + D+I+ D+ + E+ G+E
Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++K   E   IP+I +TA     D     + G + YI KP+ LS+    I   +  
Sbjct: 1195 LCRRVKTQFETCHIPLILLTAKTSDEDHVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253


>gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
 gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    +    ++   Y   +  NG +AL+     K D+ I+DI L +I G +I
Sbjct: 7   ILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIMLPDIDGFQI 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            KQI++       PVI +TA     D+      G + YI KP +    +  +K  +  
Sbjct: 67  LKQIRQKYTF---PVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 121


>gi|160901173|ref|YP_001566755.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366757|gb|ABX38370.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 342

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ ED      +    +  S    +   +G +ALEL    KPD++++D+Q+  + G ++
Sbjct: 116 ILVAEDEPEIADILCAYLARSDLRTVHAADGQQALELHHHLKPDLVLLDVQMPRLDGWQV 175

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+      + PVI +TA     D+    + G + Y+ KP + +  +  ++  +  
Sbjct: 176 LSEIRRRG---DTPVIMLTALNQDVDKLIGLRIGADDYVGKPFNAAEVVARVQAVLRR 230


>gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei
           TW08/27]
 gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma
           whipplei TW08/27]
          Length = 227

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + K+++V+D      L    +  +GY  +   NG  A+      +PD+IIMD+ L ++
Sbjct: 1   MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG   TK+++E       PVI ++A     D+      G + Y++KP SL   +  +   
Sbjct: 61  SGFAATKRLREAGF--RCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAI 118

Query: 120 IGE 122
           +  
Sbjct: 119 LRR 121


>gi|17227925|ref|NP_484473.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17129774|dbj|BAB72387.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 276

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ED+ +   L+   ++  G+  +   NG+  ++ A++H PD+II DI + ++ G  
Sbjct: 7   TILVIEDDTVTRNLYLKGLKIEGFNVIGAENGVVGVQKAQEHLPDIIICDIMMPQMDGYS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +++DS    IP I +TA  M+GD  +  + G + YI+KP +L   ++ I   + +
Sbjct: 67  VLTILRQDSLTAGIPFIFLTASDMRGDLRKGMELGADDYITKPSTLDELLKAIATRLRK 125


>gi|325109884|ref|YP_004270952.1| response regulator receiver protein [Planctomyces brasiliensis DSM
           5305]
 gi|324970152|gb|ADY60930.1| response regulator receiver protein [Planctomyces brasiliensis DSM
           5305]
          Length = 153

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 61/118 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I +DN+ N +L    +    Y+     +G   L      +PD+I++DI + ++SG E
Sbjct: 14  RILIADDNQQNRELVEAYLSDEDYVIEMAHDGQHTLAQVESFQPDLILLDIMMPKMSGFE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +Q+K+    Q IPV+ +TA     D E+    G + ++SKP++       ++  + 
Sbjct: 74  VCQQLKQQEATQSIPVLMITALRETADIEKAVDAGADDFLSKPVNRVELKTRVRSLLR 131


>gi|237726839|ref|ZP_04557320.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435365|gb|EEO45442.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1339

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDN+            + Y  +  +NG E   +A ++ PD+II DI + E +G+E+
Sbjct: 1086 ILIVEDNDDIRNYIATSFIDN-YRTVTAKNGKEGWSMALKYIPDIIISDIMMPEKNGIEL 1144

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IKED     IPVI +TA     D+E   + G ++Y++KP S  +    I   +
Sbjct: 1145 CKLIKEDMRTCHIPVILLTAKDSILDKEEGYQSGADSYLTKPFSAKLLSSRINNLL 1200


>gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D    + +  D+     Y  L+  NG +AL+  +    D++I+DI + ++ 
Sbjct: 1   MNGTILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKTQ-VDLVILDIMMPKMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K ++E  +    P++ ++A   + D+ +    G + YI+KP  +   +  ++ ++
Sbjct: 60  GFEFCKVVREQIK---CPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE 58
           M  K+V+IVED+     L R  +   GY      +G   L L  Q  P D +++D+ L  
Sbjct: 1   MSTKRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GL++ ++ +  +    +P+I ++A   +       + G + Y++KP S+   +  ++ 
Sbjct: 61  VDGLQVCQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRA 118

Query: 119 YIGEA 123
            +  A
Sbjct: 119 LLRRA 123


>gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      + PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALR---TAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|37676593|ref|NP_936989.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37201136|dbj|BAC96959.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 1381

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 74/119 (62%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV++V+D+  N+     ++E  G   +  R+G+E+L+  +++   DV++MDI + ++ G
Sbjct: 1262 KKVLLVDDDMRNVFALSSILEDKGMDIVIARDGLESLDKLKENPDIDVVLMDIMMPKMDG 1321

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I++    +++PVIA+TA AMKGD  +  + G   Y++KP++    +  ++ ++
Sbjct: 1322 YEAMEEIRKQKVYEKLPVIALTAKAMKGDRSKCIEAGASDYLAKPVNTDKLLSMLRVWL 1380



 Score =  114 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++I+ED+     + RD     G+  +    G   L  A+ +KP  II+DI L  I G 
Sbjct: 994  RTLLIIEDDRAFASVMRDFGRERGFKCIVAETGETGLHFAQYYKPSAIILDIGLPGIDGW 1053

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             + +++KE+ E + IPV  ++A     D     + G   Y++KP+ +    + 
Sbjct: 1054 TVMERLKENPETRHIPVHFMSANDANLD---ALRMGAIGYLTKPVDMKKLEKA 1103



 Score = 91.0 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VED+ +  +  R LI       +    G +ALE    ++ D +++D+ L++++G 
Sbjct: 1116 KRLLVVEDDAIQQESIRQLIGEDDIHIVAVPTGEKALEELESNRYDCMVLDLGLEDMTGF 1175

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ ++I+       +P+I  T   +  +EER      E+ I K + S    ++
Sbjct: 1176 ELLERIRRSETAARVPIIVYTGRELSKEEERELNRYAESIIIKGVKSPERLLD 1228


>gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 234

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    +L    +E  G+   +  +G++AL+   Q K D++I+DI +  + G ++
Sbjct: 14  ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++     +IP++ +TA      + +    G + Y+ KP      +  +K  +  
Sbjct: 74  CFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128


>gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 245

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I +D++  +      + + GY  ++  NG EAL    Q+   +I+MDI + E+ G
Sbjct: 15  MHTILICDDDKDIVSALDIYLSSEGYKTVKAYNGNEALRAVEQNDIHLILMDIMMPELDG 74

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +++E      +P+I +TA +   D+      G + YI+KP +    +  +K  + 
Sbjct: 75  IRATAKLRE---GSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLR 131

Query: 122 E 122
            
Sbjct: 132 R 132


>gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    +L    +E +GY       G    E AR   PD++I+D+ L  + G
Sbjct: 1   MPNILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + ++ DS    +P++ +TA     D+    + G + Y++KP    + +  ++  + 
Sbjct: 61  LQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|320329810|gb|EFW85798.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 705

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G   L +     PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K       IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|297156766|gb|ADI06478.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1814

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    +++MDI + E+ G 
Sbjct: 1694 KVLIVDDDIRNVFALTSVLEQHGLQVLYAENGREGIEVLEQHDDVVLVLMDIMMPEMDGY 1753

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++G
Sbjct: 1754 ATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIQAGASDYVTKPVDTDHLLAVMEQWMG 1812


>gi|241957485|ref|XP_002421462.1| histidine kinase, putative; nuclear response regulator and
            transcription factor, putative [Candida dubliniensis
            CD36]
 gi|223644806|emb|CAX40799.1| histidine kinase, putative [Candida dubliniensis CD36]
          Length = 1070

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++ EDN +N KL   ++E  G+      NG+EA E  +++K DV++MD+Q+  + G E
Sbjct: 878  KILLAEDNLVNQKLAVRILEKQGHQVEVVENGLEAFEAIKKNKYDVVLMDVQMPVMGGFE 937

Query: 64   ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M+T
Sbjct: 938  ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 997

Query: 116  IKKYI 120
            I K I
Sbjct: 998  INKCI 1002


>gi|253699010|ref|YP_003020199.1| response regulator receiver protein [Geobacter sp. M21]
 gi|251773860|gb|ACT16441.1| response regulator receiver protein [Geobacter sp. M21]
          Length = 204

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 70/118 (59%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D   N+ +   ++    Y  L   +G EAL    ++ PD+I++D+ + E+ GL
Sbjct: 4   KKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEALLALAENLPDLILLDVMMPEMDGL 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ + +K+DS  ++IPVI +TA + + DE R  + G   Y+SKP++  I    +  ++
Sbjct: 63  EVCRILKDDSRYRDIPVIFITALSDEVDESRGFEAGAVDYLSKPVNPVILSHRVAVHL 120


>gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 277

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 42  KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 101

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +     +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 102 EICR--RARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 159


>gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
 gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 62/118 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +  VED+    +L    +ET+G+ A    +G E LE      P++I++DI L  + GLE+
Sbjct: 2   IFCVEDDSNIRELVIYTLETTGFKARGFEDGKEFLEALALETPELILLDIMLPGMDGLEL 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++K   + ++IPVI +TA   + D+ +    G + Y++KP  +   +  IK  +  
Sbjct: 62  LSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLRR 119


>gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|77359900|ref|YP_339475.1| response regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874811|emb|CAI86032.1| putative response regulator [Pseudoalteromonas haloplanktis TAC125]
          Length = 549

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 1/121 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  +++V+D  LN  L + L+   GY      NG+ AL++  Q   D++++D+ +  + 
Sbjct: 1   MM-HILVVDDQALNRILLQRLLTQEGYTVSLAYNGVAALKILSQTPIDIVLLDVVMPIMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K IK+      +P+I +TA       ER    G + +I KP    I    IK + 
Sbjct: 60  GFETAKIIKQRFNDIHLPIIFITALDDHASFERCLAVGGDDFIQKPFEKVILHAKIKAHC 119

Query: 121 G 121
            
Sbjct: 120 R 120


>gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 223

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++++D+     + +  +   GY      +G + + +A+++ P+++I+DI L  + 
Sbjct: 1   MGARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI ++ ++D+     P++ ++A      + +    G + Y+ KP +L   +  ++  +
Sbjct: 61  GWEICQRFRKDNFT---PILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella
            amazonensis SB2B]
 gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella
            amazonensis SB2B]
          Length = 1287

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 70/118 (59%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VEDN  N  +   L+   G   ++  +G +AL+L  + + D+++MDIQ+  + G 
Sbjct: 924  RRLLLVEDNATNRLVATSLLGQLGAEVIEAVDGFQALKLLSRQQFDLVLMDIQMPGMDGY 983

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T++I+ +  L ++P+IA+TA AM  D++  R  G   +ISKP  +      + +Y+
Sbjct: 984  QTTRKIRNELMLTDLPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEVATKLLQYL 1041



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEIS 60
           +V++VEDN  +  +F +L+   G       NG+ A++   +  P   DV++ D QL  + 
Sbjct: 779 RVLLVEDNHTSRLVFSELLRDLGCEVTALNNGLTAMKTIERMAPDSFDVLLADWQLPGLD 838

Query: 61  GLEITKQIKEDSELQEIP-VIAVTAF--AMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           GLE+   I+    L   P +I VTAF  AM   + + R+   +A + KP++  +    ++
Sbjct: 839 GLELASWIRHLDSLSRQPGIIIVTAFSQAMLEAQLKHREEEFDATLIKPVTREMVSRCLQ 898

Query: 118 KYIGE 122
             +  
Sbjct: 899 SVLER 903


>gi|332883803|gb|EGK04083.1| hypothetical protein HMPREF9456_01111 [Dysgonomonas mossii DSM 22836]
          Length = 1396

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IV+DNE   +    L     Y  +   +G E   +     PD+I+ D+ + ++ G E  
Sbjct: 1149 LIVDDNEDFCEFITSLFIDD-YRTVIANDGEEGYSIVLDQLPDIILCDVMMPKMDGYEFC 1207

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +K D     IP+I +TA + +  +    + G + YISKP ++ +    I K I  
Sbjct: 1208 RHVKGDIRTSHIPIILLTAKSSEESKYSGIEAGADDYISKPFNIDMLKLKIAKIIER 1264


>gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 257

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    +     +   GY      +G+ ALEL  + +PD+ ++D+ +  + GLE
Sbjct: 12  RVLVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRERPDIAVLDVMMPRMDGLE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
             +Q++   +  ++PV+ +TA     D       G + Y+ KP +L    
Sbjct: 72  ACRQLRARGD--DLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELF 119


>gi|237654345|ref|YP_002890659.1| response regulator receiver protein [Thauera sp. MZ1T]
 gi|237625592|gb|ACR02282.1| response regulator receiver protein [Thauera sp. MZ1T]
          Length = 121

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 64/116 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+D+ +     ++++  +GY  L   NG +A+  +R   PD+I+MD+ +  ++G 
Sbjct: 4   RKILVVDDSPVERLALQEVLGRNGYQVLTAENGEQAIARSRSDHPDLILMDVVMPGMNGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + T+ I  D E ++IP+I  T+   + D+    + G   Y+ KP+     +  I+ 
Sbjct: 64  QATRTISRDDETRDIPIIMCTSKGQETDKIWGMRQGALDYLVKPVDHDELLARIRA 119


>gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++VED+ L  +   D  +   +   +  NG  ALEL  +   D+I++DI + E+ 
Sbjct: 1   MKRSILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+E S   ++P+I +TA A   D+    + G + Y++KP+S  + +      +
Sbjct: 61  GWSVCRRIREKS---DVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALM 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 235

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++++D+E        ++E  G+ A+Q  +G +  E A   KPD++++D++L  +SG
Sbjct: 12  MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSG 71

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQ++        P+I ++A   + D+  + + G + Y+ KP         I+  + 
Sbjct: 72  TEICKQLRA--ARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLR 129

Query: 122 EA 123
            A
Sbjct: 130 RA 131


>gi|91778395|ref|YP_553603.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91691055|gb|ABE34253.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 361

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ L  D ++ +GY  L   +G  AL+   +  PD +++D  +  + G E 
Sbjct: 23  VLIVDDTPDNLALLSDTLQAAGYAVLVALDGQSALQRLARITPDAVLLDALMPGLDGFET 82

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++IK D   + +PVI +TA        +  + G   Y++KP+  S     I  ++  +
Sbjct: 83  CRRIKADPRNRHLPVIFMTALTDSEHVVQGFRVGGIDYVTKPVKPSEVSARIAAHVQRS 141


>gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
 gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
          Length = 243

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIERLQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGIT--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|297559295|ref|YP_003678269.1| response regulator receiver protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843743|gb|ADH65763.1| response regulator receiver protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 138

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 66/119 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED+++  +L R  +E  G+      +G + L+ A    P V+ MD+ +  + G  
Sbjct: 17  RVLVVEDDDVIRELIRLNLELEGFEVFTAVDGQDCLDRAAHIDPHVVTMDVMMPRVDGWT 76

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++ D+  ++ P+I VTA   + D +R R+ G +AY++KP    + ++ I+  +  
Sbjct: 77  AVERLRADARTRDRPIIMVTARTQETDHQRGRRVGMDAYLTKPFDPDVLIDIIRSLVDR 135


>gi|326319281|ref|YP_004236953.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376117|gb|ADX48386.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 248

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D+    +L  D +  +G       +G    +   +H  D++++D+ L    GL
Sbjct: 10  ARILVVDDDPEIRELLCDYLRAAGLRPAAVADGEAMWQWLARHTADLVVLDLMLPGTDGL 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++E      IPV+ +TA     D     + G + Y+ KP      +  I   +  
Sbjct: 70  ALCRALRE---CTHIPVVMLTARGALLDRILGLEMGADDYLPKPFDPRELLARINVVLRR 126

Query: 123 A 123
           A
Sbjct: 127 A 127


>gi|166366489|ref|YP_001658762.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
 gi|166088862|dbj|BAG03570.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
          Length = 368

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N++L   ++   GY   +  NG  AL   R   PD+I++DI + +++G ++
Sbjct: 10  VLIVDDLPNNVRLLSIMLTEKGYQVRKAINGQMALNTVRSLIPDLILLDINMPDLNGYQV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K D + +EIPVI ++A     D+ +  + G   YISKP      M  I+  +
Sbjct: 70  CEQLKADEKTREIPVIFISALDDVLDKVKAFQVGGVDYISKPFQGEEVMARIENQL 125


>gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 230

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK++I+ED +   +     +E  GY      NG   LE A     D+I++D+ L E+ G
Sbjct: 3   SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++++   ++ P+I +TA     D       G + YI+KP ++   +  ++ +  
Sbjct: 63  FEVARRLRKE---KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|163849322|ref|YP_001637366.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527316|ref|YP_002571787.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl]
 gi|163670611|gb|ABY36977.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222451195|gb|ACM55461.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl]
          Length = 390

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   ++IV+D++   ++   ++  +GY   +  +G EAL+   ++ PD +I D+ L  I
Sbjct: 1   MKPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K++++    + +P++ +TA      +    + G   Y++KP      +  +K  
Sbjct: 61  DGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNI 120

Query: 120 IGE 122
           +  
Sbjct: 121 LAR 123


>gi|315607847|ref|ZP_07882840.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
 gi|315250316|gb|EFU30312.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
          Length = 869

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 1   MLKKV-----------MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV 49
           M +K+           ++++DN         L+  + Y   Q  +G E L  A +  PD+
Sbjct: 611 MTEKITRPGEKEKPSLLVIDDNPDIRSYVMTLL-GNDYNVEQAADGREGLHKAMRDVPDL 669

Query: 50  IIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109
           II D+ +  + GLE  +++K D     IPV+ +TA  ++         G +AY++KP S 
Sbjct: 670 IICDVMMPVMDGLEFCRRVKHDVITSHIPVLLLTARTLEEQRVEGYDYGADAYLTKPFSG 729

Query: 110 SIFMETIKKYI 120
            +    ++  +
Sbjct: 730 EVLKSRVRNLL 740


>gi|260910360|ref|ZP_05917033.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635543|gb|EEX53560.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 858

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++  +DN+   ++ R L+ T  Y  L   NG  AL+LA  + PD+++ D+ + ++ GLE
Sbjct: 611 TILFADDNDDVCQMVRTLLATR-YRVLTAPNGEVALQLAELNIPDLVVSDVMMPQMDGLE 669

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K+ +    IPVI +TA  +        + G +AYI+KP S  + +  I   +
Sbjct: 670 LCRRLKQTTATSHIPVILLTARTLDEQRIAGYEHGADAYITKPFSAPLLLARIHNLL 726


>gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii
            CIP 102972]
 gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii
            CIP 102972]
          Length = 1268

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 64/112 (57%)

Query: 8    VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
            VEDN  N  +  +L+   G   ++  +G+EAL    Q +  +++MD+Q+ ++ G E T++
Sbjct: 930  VEDNPTNRLVATELLSQQGATIVEAESGVEALAALDQQEFSLVLMDVQMPDMDGYETTRR 989

Query: 68   IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            I++ +   ++P++A+TA AM  D+      G   +I+KP  +   +E I +Y
Sbjct: 990  IRQMAHFADLPILAMTANAMPEDKVACLNAGMNDHIAKPFHIGEVVEKILQY 1041



 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59
           V+IVEDN     +F DL++  G       +   AL+   Q        D++ +D +L  +
Sbjct: 779 VLIVEDNNTARLIFDDLLQRLGCHVTAVADAEHALDTIEQADANGQPFDLLFIDWKLPGM 838

Query: 60  SGLEITKQIKEDSELQEIP-VIAVTAFAMK------GDEERIRKGGCEAYISKPISLSIF 112
            GL +T+ ++    L + P V+  TAF  +       + + +     +A + KP++  + 
Sbjct: 839 DGLSLTQSVRHGMALSKTPLVVMATAFGRELLDEHLEETQSLL----DALLVKPVTPDMV 894

Query: 113 METI 116
             T+
Sbjct: 895 KNTL 898


>gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 268

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR 157


>gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
 gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IVED      L    ++   Y   +     EALE   ++  D+ I+DI L ++S
Sbjct: 1   MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I++       P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLTICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345]
 gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 241

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQTGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|94264441|ref|ZP_01288230.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455131|gb|EAT05353.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 409

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
             +++V+D  +N+ + +  ++   +  L   +G +ALELAR   +PD+I++DI +  + G
Sbjct: 14  ATILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDIMMPGMDG 72

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +Q+K D E ++IPVI VTA      E++  + G   Y+SKPI   I    ++ +I
Sbjct: 73  HEVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKPEILRVRVRNHI 131


>gi|330892053|gb|EGH24714.1| two-component response regulator transcription regulator protein
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 236

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++++D+    K+    +   G+  L   +G EA+  +   + +++++DI +  +SG
Sbjct: 1   MPKVLLIDDDVELTKILSQYLSNEGFDVLAIHDGEEAISRSANERFEIVVLDIMMPRLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++I+ +S    +P++ +TA     D+      G + Y+SKP + +  +  I+  + 
Sbjct: 61  LQVLQRIRINS---SVPILMLTARGDDVDKVTGLNLGADDYVSKPCTPAELVARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|289623551|ref|ZP_06456505.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649158|ref|ZP_06480501.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867854|gb|EGH02563.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 705

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G   L +     PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K       IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 279

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 53  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGLPELDGLE 112

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 113 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 168


>gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
 gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
          Length = 224

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +    +    ++ + +      NG EALE       D+I++DI L +++G E
Sbjct: 2   RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTYDLIVLDIMLPKVNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++E+    E  V+ +TA     D+ +    G + Y+ KP      +  I+  +  
Sbjct: 62  VIKKLRENKN--ETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRR 118


>gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|298489751|ref|YP_003719928.1| response regulator receiver modulated serine phosphatase ['Nostoc
           azollae' 0708]
 gi|298231669|gb|ADI62805.1| response regulator receiver modulated serine phosphatase ['Nostoc
           azollae' 0708]
          Length = 378

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 54/117 (46%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D+       + ++E  GY  +   NG E +  A    P +II D  +  ++G+E+
Sbjct: 4   ILVIDDDYSIQIFLKRMLEKQGYEVITASNGQEGILQALACPPALIICDWIMPGLTGIEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              IK+D  L     I +T+     D  +    G + +ISKPI  +     ++  + 
Sbjct: 64  CDHIKKDPNLSTTFFILLTSLDSVADRVKGLDAGADDFISKPIEQNELQARVRAGLR 120


>gi|224369670|ref|YP_002603834.1| two-component response receiver and regulator protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692387|gb|ACN15670.1| two-component response receiver and regulator protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 222

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N+++   +++  GY       G  AL       P++I++DI +  ++G E+
Sbjct: 8   IIIVDDNPHNLRVLSTILKKEGYEIRPATGGQTALAAIDAKPPELILLDIMMPAMNGYEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK--YIGE 122
            + +K++   + IPVI +TA     D+ +    GC  YISKP      +  +K   ++G 
Sbjct: 68  CECLKKNEGTRNIPVIFITALDDVKDKIKAFAMGCTDYISKPFQEEEILARVKTQIHMGR 127


>gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLLREQRPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA     D     + G + Y+ KPI   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1238

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL+       D ++MDIQ+  + GL  
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E     ++P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1174 ARALRERFSADDLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229



 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  L+    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 968  RTLVVDDNPTALQIYSSLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSD 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  L + P +I +TA+A +  +  +      A + KP   S   + I
Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084


>gi|94264856|ref|ZP_01288631.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454677|gb|EAT04942.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 409

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
             +++V+D  +N+ + +  ++   +  L   +G +ALELAR   +PD+I++DI +  + G
Sbjct: 14  ATILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDIMMPGMDG 72

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +Q+K D E ++IPVI VTA      E++  + G   Y+SKPI   I    ++ +I
Sbjct: 73  HEVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKPEILRVRVRNHI 131


>gi|150016009|ref|YP_001308263.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902474|gb|ABR33307.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 71/119 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E  ++L    +  +GY  L   NG++A+++A+  KP ++++D+ L  + G +
Sbjct: 5   KILIVDDEEHIVELLHFNLVNAGYEVLSANNGIDAVKIAKAEKPSLLLLDLMLPGMDGFD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+IK DSE+++  +I +TA   + D+    + G + YI+KP S+   +  +K  +  
Sbjct: 65  VCKEIKRDSEMKKTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123


>gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
 gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
          Length = 241

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    ++    +   G+      +G   ++   +   D++I+DI + ++ 
Sbjct: 12  MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 71

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+      +K  I
Sbjct: 72  GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 128

Query: 121 GEA 123
             +
Sbjct: 129 RRS 131


>gi|298385504|ref|ZP_06995062.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14]
 gi|298261645|gb|EFI04511.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14]
          Length = 231

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K    V++VED      + +D +E +G+      +G E L L  + +PDV++ D+ + 
Sbjct: 1   MSKNDITVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFFELRPDVLVADVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ G E+ ++I++    ++ PV+ +TA +   D     + G   Y+ KP  +   +  IK
Sbjct: 61  KMDGFEMVRRIRQTD--KQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIK 118

Query: 118 KYIGEA 123
             +G+A
Sbjct: 119 ALMGKA 124


>gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K V++VED +    +    ++  G+  L+   G  ALE+ R    D++I+D+ L ++ G
Sbjct: 1   MKTVLVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLVDLVILDLMLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   I++      IP++ ++A     +  +    G + Y+ KP      +  ++  + 
Sbjct: 61  EQVCVSIRK---TNSIPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42]
 gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42]
          Length = 227

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN     +        G+ A    +G+E  +   +   D++I+DI L  + G+ 
Sbjct: 2   KILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGVT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+E      +P+I +TA   + D+    + G + Y++KP S    +  IK  I  
Sbjct: 62  ICRKIRE---TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117


>gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium
           diphtheriae]
          Length = 240

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 74  VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129


>gi|17230613|ref|NP_487161.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132216|dbj|BAB74820.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 382

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 59/117 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D   N  +   L+    Y      +G EA+      +PD+I++D+ +  + G+E+
Sbjct: 6   ILVIDDLPDNFDVIETLLSEQDYTLHYVASGQEAIASLNLFQPDLILLDVMMPGMDGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++IK   + Q +P+I VTA   K D  R  + G + +ISKPI+       +   + 
Sbjct: 66  CQRIKAMPQWQPVPIIMVTALTAKEDLARCLQSGADDFISKPINALELRARLHSMLR 122


>gi|332527152|ref|ZP_08403227.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Rubrivivax benzoatilyticus JA2]
 gi|332111578|gb|EGJ11560.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Rubrivivax benzoatilyticus JA2]
          Length = 392

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            ++IV+D   N+K+   ++   GY  +   NG  AL LA +   P +I++D+ + ++SG+
Sbjct: 13  TILIVDDEPANLKILATILGDKGYRVIAASNGETALRLAERPPLPSLILLDVMMPDMSGM 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E+   + IPV+ VTA   + DEE   K G   YI KP S  I +  ++  +  
Sbjct: 73  VVLEKLRENPATRAIPVVMVTALGKERDEETGLKAGASDYIKKPFSPLILLARVRSQLDA 132

Query: 123 A 123
           A
Sbjct: 133 A 133


>gi|325277539|ref|ZP_08143134.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324097320|gb|EGB95571.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 456

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           +KV++V+D+  N+      +E  G I    RNG EA+E   QH   D+++MD+ + E+ G
Sbjct: 332 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 391

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+ I++    +++P+IAVTA AMK D+ R  + G   Y++KPI L      I+ ++ 
Sbjct: 392 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQHRCLQAGANDYLAKPIDLDRLFSLIRVWLP 451

Query: 122 E 122
           +
Sbjct: 452 Q 452



 Score = 97.1 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E  ELA +  PD I++D++L + SGL +
Sbjct: 66  ILVIEDEPNFARILFDLAHELGYSCLVAHAADEGFELAARFIPDAILLDMRLPDHSGLTV 125

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE ++ + IPV  ++      D        G   Y  KP S     E   + 
Sbjct: 126 LQRLKEQADTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 177



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED++L  +    LI              EAL L R++  D +I+D++L ++ G 
Sbjct: 186 KHILLVEDDDLQRESIARLIGDDDVEITAVGMAQEALALLRENIYDCMIIDLKLPDMLGN 245

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92
           E+ K++  +      PVI  T   +  +EE
Sbjct: 246 ELLKRMTAEDIRAFPPVIVYTGRNLTREEE 275


>gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 243

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 63/120 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     +     +   GY   ++ NG EALELA  +  D+I++DI L  ++
Sbjct: 1   MGAHILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNHFDLILLDIMLPGLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++ ++ E+   PVI +TA     D+      G   YI+KP ++   +  I+  +
Sbjct: 61  GLEVLRRLNKEQEMNPTPVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARIRVAL 120


>gi|309775020|ref|ZP_07670035.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917238|gb|EFP62963.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D E    + R   E  G+   +  +GM+A+E  +Q   D+IIMDI +  + G
Sbjct: 1   MSRLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAAYDLIIMDIMMPNLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+I++D      PVI ++A   + D     + G + Y+ KP S    M  +   + 
Sbjct: 61  FSAVKEIRKD---ASTPVIMLSARGEEYDRIHGFEIGIDDYVVKPFSPKELMMRVSAILK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|170695744|ref|ZP_02886886.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170139349|gb|EDT07535.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 247

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D+ +  +L    +E  G+      +GM      +  +P ++++DI + E+ 
Sbjct: 1   MNQSILVVDDDPVVRELVSQYLEGRGFKVATLEHGMALQRKLQDERPALVVLDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++      +IPVI +TA A   D     + G + Y+ KP   S  +  I+  +
Sbjct: 61  GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 305

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 60/119 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +      +E SG   L   +G  AL +A +  PD+++MD  + E+ G E 
Sbjct: 11  VLVVDDSPETLGFLTQALERSGVTVLVATSGQAALSVAERVTPDMVLMDAVMPEMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++IK    LQ +PVI +T  +         + G   +++KPI++      I+ ++  A
Sbjct: 71  CRRIKTRPALQHVPVIFMTGLSETEHVVHALESGGVDFLTKPINIDELQARIRVHLANA 129


>gi|325924825|ref|ZP_08186260.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|325544755|gb|EGD16103.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 1057

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ D+++MDI + E+ G+
Sbjct: 937  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 996

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D ER  + G   YI+KPI +   +   + +   
Sbjct: 997  TAMRQIRTNRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1056



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    +   +L     +  +   N  EAL LA + +P  I++DI L + SGL +
Sbjct: 671 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAEMRPSGILLDIGLPDASGLSV 730

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + +PV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 731 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 782



 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+       + L+       +   +  EA++   +   D ++ D+ L + SG 
Sbjct: 791 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDQLARSTFDCMVTDLALPDGSGY 850

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 851 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 910

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 911 SVEASLPSDQQRLLREA 927


>gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
 gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +  R  +   GY  L+   G EAL+ A    PD++I+D+ L +I G+E
Sbjct: 7   RILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGLPDIDGVE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + ++I+E      +P++ ++    + D+      G + Y++KP  +   +  I+  I 
Sbjct: 67  VVRRIRE---WSNVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIR 121


>gi|320334816|ref|YP_004171527.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
 gi|319756105|gb|ADV67862.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
          Length = 1838

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K+V++V+D+  N+     ++E          NG +A+ +       DVI+MD+ + E+ G
Sbjct: 1718 KRVLVVDDDIRNIFALTAVLERHHMTVFTAENGRDAINMLESTPDIDVILMDVMMPELDG 1777

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T+ I+++ + + +P+I++TA AM GD E+    G   YISKP+     +  ++ ++
Sbjct: 1778 YETTRLIRQNRKFKNLPIISLTAKAMPGDREKSIASGASDYISKPVHSEKLLSLLRVWL 1836



 Score = 90.2 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + V+IVED+     +  DL    G++AL    G +A+ LA+ ++P  I +D+ L + SG 
Sbjct: 1450 RTVLIVEDDATFAGILLDLAHERGFMALIASRGEQAITLAQTYRPSAITLDLSLPDTSGW 1509

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKY 119
             +   +K D   + IPV  ++    +      RK G   +++K    +   +    ++ +
Sbjct: 1510 AVLDHLKHDPVTRHIPVHIISG---EEATLLGRKLGALDHVTKSGDRAALHQAFENLESF 1566

Query: 120  IGE 122
            I  
Sbjct: 1567 IAR 1569



 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++VED+    +   DLI           +G EAL        D I++D++L ++SG 
Sbjct: 1572 KNLLVVEDDLTQRENIVDLIGNGDVKTTAVSSGAEALGALATTAFDCIVLDLKLPDMSGF 1631

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME------- 114
            ++   ++++   + IP+I  TA  +   +E   +   ++ I K + S    ++       
Sbjct: 1632 DLITTLQKNPAFRAIPIIVYTAQDLTRQQETQLRKAAKSIILKDVRSPERLLDEVTLFLH 1691

Query: 115  TIKKYIGEA 123
             ++  + EA
Sbjct: 1692 RVEANLPEA 1700


>gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|148256093|ref|YP_001240678.1| response regulator PleD [Bradyrhizobium sp. BTAi1]
 gi|146408266|gb|ABQ36772.1| response regulator receiver modulated diguanylate cyclase
           [Bradyrhizobium sp. BTAi1]
          Length = 466

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 61/114 (53%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           V+D   N+KL    +    +  L   NG EAL++ ++ + D+I++D+ + ++ G E+ ++
Sbjct: 2   VDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAECDIILLDVMMPDMDGFEVCRR 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +K +     IPV+ VTA     D  R  + G + +++KP+S  + +  ++    
Sbjct: 62  LKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTR 115



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   + +    ++    +      N  EA+  A +   D++I+ + L +  GL 
Sbjct: 151 RILLVDDRPSSYERLGPMLAAE-HSVDVEPNPSEAVFNAAEGNYDLVIVSLDLDDFDGLR 209

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q++     + +P++A+ A A       R  + G   Y+ +P+  +  M   +  I +
Sbjct: 210 LCSQLRSLERTRHVPILAI-AEAENNTRLLRGLEIGVNDYLLRPVDKNELMARARTQIRK 268


>gi|89954507|gb|ABD83655.1| response regulator protein-like [Rickettsia honei]
          Length = 450

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 65/118 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D+I++D+ + E+ G
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK + E   IPV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  CEVCKTIKTNPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 68.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSGE-LDIINEYTPDLVIISSTLENDDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 211 RISGILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270


>gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM
           22836]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++VED     +L +  +E  GYI     +G     L   H  D+II D+ L  I+G
Sbjct: 1   MKKILVVEDELRIAELLKKGLEEFGYIVTLAFDGEMGKRLVNNHIYDLIITDVILPHING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+      EIP+I +TA     D+      G + Y+ KP  L      I   + 
Sbjct: 61  FELCKEIRA--VHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|313673726|ref|YP_004051837.1| response regulator receiver protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940482|gb|ADR19674.1| response regulator receiver protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 121

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 68/118 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++ +D     K+    ++ +G+  ++  NG +A+ELA+ H P++I++D+ + E+ G+ 
Sbjct: 2   KVLLADDELRLRKVVVLHLKKAGFDVIEASNGKQAVELAKIHNPEIIVLDVMMPEMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             K+ ++  E  + P+I +TA A   D E  +  G   Y++KP S    +E I++ +G
Sbjct: 62  ACKEFRKSPEFAKTPIIMLTAKATSDDIEVGKSAGASEYLTKPFSPKELIEKIQELMG 119


>gi|228477380|ref|ZP_04062016.1| response regulator SaeR [Streptococcus salivarius SK126]
 gi|228250815|gb|EEK10003.1| response regulator SaeR [Streptococcus salivarius SK126]
          Length = 232

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + +    +  +GY  L   +G E LEL R+   D+II DI +  + 
Sbjct: 1   MKKTILLVDDEINILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++         P +  TA   + D+      G + +I KP S    +  +   +
Sbjct: 61  GYDFISEV--QYIAPNQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
 gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
          Length = 1367

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 76/121 (62%), Gaps = 1/121 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++IV+DN +N K+  +++  +G I     +G +AL+  + H  D+I MDIQ+  + G+E
Sbjct: 1107 RILIVDDNIVNRKVASEILNNAGCIISLAESGYQALDKVQAHSYDLIFMDIQMPGMDGVE 1166

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-IGE 122
             T+ IK     Q  P++A+TA++MK D ER  + G + Y+SKP+     ++ +++Y +G+
Sbjct: 1167 TTRAIKGLGIEQLPPIVAMTAYSMKEDRERFMEEGLDDYVSKPVKAQTLIQKVQEYILGK 1226

Query: 123  A 123
            +
Sbjct: 1227 S 1227


>gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis]
          Length = 220

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED++      R  +  +GY      +G EA     ++   ++I+DI L  ++
Sbjct: 1   MSIRILLVEDDDHICNTVRGFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++ +  +   + P++ +TA +   ++ R      + Y++KP  + I ++ ++  +
Sbjct: 61  GHELLREFRAKN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 230

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++++ED+    ++    +   G+      +G E +        D+II+DI + ++ 
Sbjct: 1   MSRHILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGVAKFFHGSFDLIILDIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I+E S    +P++ ++A     D+      G + YI KP S+       K  I
Sbjct: 61  GLEVVRIIREKSA---VPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300855125|ref|YP_003780109.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435240|gb|ADK15007.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +  + +    ++  GY+  +  +G EAL       P ++I+D+ L  ++
Sbjct: 1   MNEKILLVDDEKSILDVLTYALKREGYLVERAYDGEEALHKVDIFNPHIVILDLMLPVMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I K++    E + I +I +TA     D+    + G + Y++KP  +   +  IK  +
Sbjct: 61  GYDICKKL----ENKNIGIIMLTAKEDIVDKILGLEFGADDYMTKPFDIRELLARIKSLV 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|237717953|ref|ZP_04548434.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229452755|gb|EEO58546.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1511

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALKYLPDIIISDVMMPEKDGIEMT 1296

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351


>gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
 gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
          Length = 1331

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGISAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|323341209|ref|ZP_08081456.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091403|gb|EFZ34028.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 243

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 70/123 (56%), Gaps = 5/123 (4%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++VED+    +  R L+E+  Y  ++  NG+  L+L  +   D++I+DI + ++
Sbjct: 6   MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDE-TIDLVILDIMMPKL 64

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +GL++ ++I++      +PV+ +TA + + D+      G + Y++KP S +  +  +K  
Sbjct: 65  NGLKVCEEIRK---TSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKAL 121

Query: 120 IGE 122
           +  
Sbjct: 122 LRR 124


>gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L    +E + +     R+G E  +        ++++D+ L   SGLE
Sbjct: 6   HILIVDDDREIRDLLARFLERNQFRVTTARDGRETRKAWLAGHYQIVVLDLMLPGESGLE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++       +P+I +TA   + D     + G + Y+ KP +    +  I+  +  +
Sbjct: 66  LARWLRGQ---ANVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRS 122


>gi|153870478|ref|ZP_01999872.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073055|gb|EDN70127.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 402

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 65/113 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+++   ++   GY    T +G  AL+ A+   PD++++DIQ+ E++G E+
Sbjct: 8   ILLVDDIPTNLQVLTQMLTEHGYKIRPTTSGQLALKSAQFTLPDLVLLDIQMPEMNGYEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            +++K D +  +IPVI ++A +   D+ +    G   Y++KP      +  ++
Sbjct: 68  CEKLKADEKTCDIPVIFISALSEVFDKVKAFSVGGVDYVTKPFQAEEVLARVE 120


>gi|88860786|ref|ZP_01135423.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           tunicata D2]
 gi|88817381|gb|EAR27199.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           tunicata D2]
          Length = 919

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 69/116 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N  +  ++++T    +    NG EALEL + +  D+++MD Q+  + G E
Sbjct: 802 RILVAEDNPINQIVITEMLKTLSIESTLANNGAEALELLKTNNFDLVLMDCQMPVLDGYE 861

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            TKQI+  ++ Q +PVIA+TA  M  D+    + G  A+++KP+ L    + + ++
Sbjct: 862 ATKQIRAQAQWQHLPVIALTANVMPEDKAYALEVGFNAHLAKPLDLKKLTQCLAQF 917


>gi|127511048|ref|YP_001092245.1| response regulator receiver protein [Shewanella loihica PV-4]
 gi|126636343|gb|ABO21986.1| response regulator receiver protein [Shewanella loihica PV-4]
          Length = 120

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 60/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++ V+D+    ++    ++T+G+   +  NG EAL  A+    D++I D+ +  + G
Sbjct: 1   MKKILAVDDSASMRQMVGFTLKTAGFDVTEACNGDEALTQAKSQDYDLVISDVNMPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + + ++     +  P++ +T  +    ++  R  G   +I KP +    + T+ K + 
Sbjct: 61  ITLIRNLRSLPNYKFTPLLMLTTESGSEKKQEGRSAGATGWIVKPFNPDQLLATVNKVLR 120


>gi|69244455|ref|ZP_00602871.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257879039|ref|ZP_05658692.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881663|ref|ZP_05661316.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257890891|ref|ZP_05670544.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|258615327|ref|ZP_05713097.1| two component transcriptional regulator [Enterococcus faecium DO]
 gi|260558562|ref|ZP_05830758.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|293562842|ref|ZP_06677314.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293568418|ref|ZP_06679738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294623349|ref|ZP_06702209.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68196396|gb|EAN10824.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257813267|gb|EEV42025.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817321|gb|EEV44649.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257827251|gb|EEV53877.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260075736|gb|EEW64042.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|291588754|gb|EFF20582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291597243|gb|EFF28434.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291605166|gb|EFF34628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
          Length = 222

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+     L+R ++E +G+  +   NG +AL+     + ++II DI + ++ G
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  S   + PV+ +TA A   D++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 61  YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|307711284|ref|ZP_07647705.1| response regulator [Streptococcus mitis SK321]
 gi|307616935|gb|EFN96114.1| response regulator [Streptococcus mitis SK321]
          Length = 232

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALE+ ++   D+II DI +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKAIDLIITDIMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++    +  + P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|299148418|ref|ZP_07041480.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298513179|gb|EFI37066.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1511

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALKYLPDIIISDVMMPEKDGIEMT 1296

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351


>gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1]
 gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +    +++T+ Y      +G   L+ A     D+II+DI L +++G +
Sbjct: 2   RILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIYDLIILDIMLPKLNGFD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K  ++D    + P++ +TA     D+ R    G + Y++KP +    +  I+  +  
Sbjct: 62  ILKMCRQDKI--KTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRR 118


>gi|323527540|ref|YP_004229693.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384542|gb|ADX56633.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 247

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D+ +  +L    +E  G+      +GM      +  +P ++++DI + E+ 
Sbjct: 1   MNQSILVVDDDPVVRELVSQYLEGRGFKVATLEHGMALQRKLQDERPALVVLDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++      +IPVI +TA A   D     + G + Y+ KP   S  +  I+  +
Sbjct: 61  GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|261416187|ref|YP_003249870.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372643|gb|ACX75388.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326964|gb|ADL26165.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
            subsp. succinogenes S85]
          Length = 1211

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 75/124 (60%), Gaps = 5/124 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59
            KK+++VEDNELN ++ + ++   G+      +G  AL +  + KP   D+I+MD+Q+  +
Sbjct: 1088 KKILLVEDNELNREIAQSVLGEMGFGVDCAEDGRVALNVLEKAKPGAYDLILMDMQMPVM 1147

Query: 60   SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             GLE T++I+   D   +++P++A+TA A + D +     G   +++KPI +    + ++
Sbjct: 1148 DGLEATRRIRAMRDDYFKKVPIVAMTANAFEEDRKAALDAGMNEHVAKPIDVEKLKKVLR 1207

Query: 118  KYIG 121
            K++G
Sbjct: 1208 KFLG 1211



 Score = 57.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
             + ++V  +        +L+   G  A  T  G EA+  A++         VII+D  L 
Sbjct: 947  ARALVVASDYNACSSATNLLRRLGMRAEWTMYGREAVLRAKEAVDRHECYSVIILDDLLL 1006

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            ++  +E  +Q++        P+I + ++     E+  R+ G  A+ISKP+ L+   + + 
Sbjct: 1007 DMESVEAVEQLRMIPGSDN-PIIVMASYDCANIEKSAREAGVTAFISKPLFLTEMHDVLA 1065

Query: 118  KYIG 121
            + IG
Sbjct: 1066 RAIG 1069


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 1240

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VEDN +N ++   ++E  G       NG EAL+       ++++MD  + ++ G 
Sbjct: 662 RRILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAIANKVYELVLMDCHMPQMDGY 721

Query: 63  EITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E T++I+  ++  +++P+IA+TA   KGD ++    G   Y+ KP+ LS+  + ++ ++G
Sbjct: 722 EATRRIRVREAGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWLG 781

Query: 122 EA 123
            +
Sbjct: 782 TS 783



 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 59/117 (50%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V+IV+D+       R+++E  GY   +  NG +ALE  +Q  PD+++MD  +  + G  
Sbjct: 925  RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQMPDLVLMDAVMPVLDGFN 984

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               QI++  + +  PV+ +TA       E     G   YI KP+  S+  + + + +
Sbjct: 985  ACAQIRDLPDSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRKRVARLL 1041



 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           +++IV+++  + +         G     + +G +AL + R         D++++D  + +
Sbjct: 519 RLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSAAVEGRAYDLVLVDENMLD 578

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G  +  +I EDS +  + +I +               G   Y++KP+  S     I
Sbjct: 579 LKGFNLAHKITEDSLIAPVKIILMGHQHHPASSISSLP-GVVNYVAKPVQQSSLYNVI 635


>gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550]
 gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
 gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +   +L    ++   Y      +G EAL+       D +++DI +  + GL 
Sbjct: 2   RILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIMMPVLDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K +++  +  + PV+ +TA     D  R    G   Y+ KP +    +  I+  + +
Sbjct: 62  VLKTMRQ--KGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRK 118


>gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638]
 gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 238

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+     L R  +E  GY+     +G +AL L  Q + D +I+D+ L  + GL
Sbjct: 5   KQILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLMLPHVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++I++    + +P+I ++A + + D     + G + Y++KP S+   +  IK     
Sbjct: 65  EICRRIRQL--TRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRR 122


>gi|78046888|ref|YP_363063.1| two-component system sensor/response regulator fusionprotein
            [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035318|emb|CAJ22963.1| two-component system sensor/response regulator fusionprotein
            [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 1068

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ D+++MDI + E+ G+
Sbjct: 948  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 1007

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D ER  + G   YI+KPI +   +   + +   
Sbjct: 1008 TAMRQIRTNRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1067



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    +   +L     +  +   N  EAL LA + +P  I++DI L + SGL +
Sbjct: 682 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAEMRPSGILLDIGLPDASGLSV 741

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + +PV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 742 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 793



 Score = 72.9 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+       + L+       +   +  EA++       D ++ D+ L + SG 
Sbjct: 802 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDQLAGSTFDCMVTDLALPDGSGY 861

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 862 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 921

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 922 SVEASLPSDQQRLLREA 938


>gi|66822471|ref|XP_644590.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74860532|sp|Q86AT9|DHKI_DICDI RecName: Full=Hybrid signal transduction histidine kinase I
 gi|60472742|gb|EAL70692.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1736

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 7/125 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57
            +KV++ EDN +N KL + L+   G+     ++G +AL+   + K      D I+MDIQ+ 
Sbjct: 1550 QKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSILYDCILMDIQMP 1609

Query: 58   EISGLEITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             +SGLE T  I+E    E   IP+IAVTA AMKGD+E+  + G + Y++KPI+  +  E 
Sbjct: 1610 ILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINPKLLYEV 1669

Query: 116  IKKYI 120
            I   I
Sbjct: 1670 INTQI 1674


>gi|330829011|ref|YP_004391963.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328804147|gb|AEB49346.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 242

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I ED      +    ++  G  +L   +G EAL + +  KPD++++D+Q+ ++ G ++
Sbjct: 16  VLIAEDEAEIADILAAYLQRHGLRSLHAADGREALAMHQAFKPDLLLLDVQMPQLDGWQV 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+      + PVI +TA     D+    + G + Y+ KP + +  +  ++  +  
Sbjct: 76  LSEIRARG---DTPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRR 130


>gi|320008929|gb|ADW03779.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 228

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + LEL R+ +PD++++D+ L  I G E+ 
Sbjct: 8   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 68  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121


>gi|257487365|ref|ZP_05641406.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009036|gb|EGH89092.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 705

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G   L +     PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K       IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|254282648|ref|ZP_04957616.1| response regulator receiver modulated metal dependent
           phosphohydrolase [gamma proteobacterium NOR51-B]
 gi|219678851|gb|EED35200.1| response regulator receiver modulated metal dependent
           phosphohydrolase [gamma proteobacterium NOR51-B]
          Length = 342

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V+ V+D   N+ +    ++   Y      NG +A++LAR+ +PD+I++DI +  I G 
Sbjct: 9   QTVLAVDDTPENIDVLVGTLKDE-YRVRAAINGEKAIKLARETQPDIILLDIMMPGIDGY 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +Q+K D   + IP+I +TA    GDE    + G   YI+KP S  +    +  ++
Sbjct: 68  EVCRQLKADYTTRHIPIIFITAKNQLGDELHGLELGAVDYITKPFSPPVVKARLATHL 125


>gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 223

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
 gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
          Length = 228

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED      L  + +E +GY  +   +G+  L L + H  D++I DI L ++ G
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++ +    IP++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELAKEIRKTN--PHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 232

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E        L+   G+  +   +G  AL    +++ D++++D+ L  +SG
Sbjct: 1   MTRILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+++    +  +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKELRS---VSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 511

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D   N+ L   ++   GY       G   L  A    PD+I++D+ + E++G E+
Sbjct: 13  ILVIDDTPENLNLLSAMLTEQGYKVRSVTKGSTGLRGANAVPPDLILLDVNMPEMNGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K     ++IPVI ++A     D+ +    G   YI+KP  L   +  I+ ++
Sbjct: 73  CEHLKASDRTRKIPVIFISALGDVLDKVKAFAVGGVDYITKPFQLEEVLARIENHL 128


>gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens
           TA208]
 gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN     +        G+ A    +G+E  +   +   D++I+DI L  + G+ 
Sbjct: 2   KILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGVT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+E      +P+I +TA   + D+    + G + Y++KP S    +  IK  I  
Sbjct: 62  ICRKIRE---TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117


>gi|293572888|ref|ZP_06683838.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291607016|gb|EFF36388.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 222

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED+     L+R ++E +G+  +   NG +AL+     + ++II DI + ++ G
Sbjct: 1   MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLETTRIELIITDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  S   + PV+ +TA A   D++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 61  YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 226

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|255280977|ref|ZP_05345532.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bryantella formatexigens DSM 14469]
 gi|255268425|gb|EET61630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bryantella formatexigens DSM 14469]
          Length = 224

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++VED+    ++  D  E+ G+    T +G E LE  + +   +I++D+ L   +
Sbjct: 1   MDQKLLVVEDDRRLQEIISDYFESKGWQVRVTDDGEEVLEKIQTNSYQLILLDVMLPGEN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I ++I+E   + ++PVI +TA   + DE      G + Y++KP SL +    +   I
Sbjct: 61  GFTICRKIRE---ISDVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALI 117

Query: 121 GE 122
           G 
Sbjct: 118 GR 119


>gi|226327576|ref|ZP_03803094.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
 gi|225204102|gb|EEG86456.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
          Length = 240

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KV+IV+D+     L    +   G+      N  +   L  +    +I++D+ L    G
Sbjct: 4   SYKVLIVDDDLRLRSLLERYLTEQGFQIRTAANADQMDRLLTRESIHLIVLDLMLPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++  +    IP+I VTA   + D     + G + YISKP +    +  I+  + 
Sbjct: 64  LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|187925552|ref|YP_001897194.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716746|gb|ACD17970.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 242

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++V+D+ +  +L    ++  G+     +NG+      +  +P +I++DI + E+ 
Sbjct: 1   MNQSILVVDDDPVVRELVSGYLQGRGFKVDTLQNGLALQRRLQDERPALIVLDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++      +IPVI +TA +   D     + G + Y+ KP   S  +  I+  +
Sbjct: 61  GISALRALR--VAGDDIPVILLTARSDPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 224

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           ++KV+++ED E    + +  +E +GY  L   NG   LE    +K   +I++DI L +IS
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+E S+   +PV+ +TA   + D+    + G + Y+ KP S    +  +K  +
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 SR 119


>gi|227543768|ref|ZP_03973817.1| two component response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908835|ref|ZP_07126298.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
 gi|77745289|gb|ABB02545.1| response regulator [Lactobacillus reuteri]
 gi|227186267|gb|EEI66338.1| two component response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894242|gb|EFK87600.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
          Length = 221

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +    +    +  SGY      NG EA+E A+++  DVII+DI +   SGLE
Sbjct: 2   RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K+I+         ++ +TA   + D+      G + Y++KP SL   +  ++     
Sbjct: 62  ALKEIRATGN--RTYIMMLTAMGEEDDKVTGLDAGADDYLTKPFSLKELLARLRSRQRR 118


>gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis 638R]
          Length = 228

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED +    L R  +E +GY  L   +G   L + R +  D++I DI L ++ G
Sbjct: 1   MYSILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+       IP++ +TA     D+      G + Y+ KP         I+  + 
Sbjct: 61  FELCKEIRA--ANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A]
 gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 243

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGI--NAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 224

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED     K+    +    Y      +G  AL+     + DV+I+DI + +  GL 
Sbjct: 2   RILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ +  + +PV+ +TA     D  R    G   Y+ KP +    +  I+  +  
Sbjct: 62  VLREIRQKN--KHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118


>gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 239

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    G
Sbjct: 4   SHKILVVDDDARLRSLLERYLSEQGFHVRSVANGEQMDRLLTRETFHLMVLDLMLPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++  +    +P++ +TA   + D     + G + Y+ KP +    +  IK  + 
Sbjct: 64  LSICRRLRHVNNT--LPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1238

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL+       D ++MDIQ+  + GL  
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E     ++P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1174 ARALRERFSADDLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229



 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  L+    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 968  RTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSD 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  L + P +I +TA+A +  +  +      A + KP   S   + I
Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084


>gi|294776315|ref|ZP_06741797.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
 gi|294449832|gb|EFG18350.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
          Length = 1329

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VED++   +     +  + Y      NG EAL++  + KPD+++ DI + E+ G 
Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK +     IPVI +TA   + +     + G + Y+ KP ++ I   +I   +  
Sbjct: 1130 ELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILTN 1189

Query: 122  EA 123
             A
Sbjct: 1190 RA 1191


>gi|282899741|ref|ZP_06307704.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195356|gb|EFA70290.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 368

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D   N+ L + L+E+ GY      +G  AL+   Q  PD+I++D+ + E+ G 
Sbjct: 10  ARILVVDDRRDNLILVQTLLESEGYAIDSVSDGATALQKTVQSPPDLILLDVMMPEMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+T+ I+  + +  IP++ +TAF  +         G + +I KP   +  +  ++  + 
Sbjct: 70  EVTRTIRSYTNIDYIPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLR 127


>gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 240

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++  R+  PDV+++D+ L E+ GLE
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 74  VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129


>gi|254885151|ref|ZP_05257861.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319641338|ref|ZP_07996033.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254837944|gb|EET18253.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317387019|gb|EFV67903.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1329

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VED++   +     +  + Y      NG EAL++  + KPD+++ DI + E+ G 
Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK +     IPVI +TA   + +     + G + Y+ KP ++ I   +I   +  
Sbjct: 1130 ELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILTN 1189

Query: 122  EA 123
             A
Sbjct: 1190 RA 1191


>gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 223

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRR 117


>gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
 gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
          Length = 254

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + IV+D+E    L  D +  +G+      N  E LE+ R+    +I+MDI L  ++GLE
Sbjct: 6   TICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGLE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ +S    +PVI +TA     D     + G + Y+SKP      +  I+  +  
Sbjct: 66  LFRNLRAES---TVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRR 121


>gi|189467816|ref|ZP_03016601.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM
            17393]
 gi|189436080|gb|EDV05065.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM
            17393]
          Length = 1331

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VED+E   K     + +  +   +  NG EAL L  + +PD+II DI + E+ GL 
Sbjct: 1072 HVLVVEDDEEIRKYICRELASD-FHMHECANGKEALTLILKKEPDLIISDIMMPEMDGLT 1130

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            + K+IK++  +  IP+I +TA + + D       G +AYI KP S+ I  +T
Sbjct: 1131 LCKKIKQNVTINHIPIILLTAKSREEDNLEGLNMGADAYIVKPFSIEILRKT 1182


>gi|150006322|ref|YP_001301066.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149934746|gb|ABR41444.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1329

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VED++   +     +  + Y      NG EAL++  + KPD+++ DI + E+ G 
Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK +     IPVI +TA   + +     + G + Y+ KP ++ I   +I   +  
Sbjct: 1130 ELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILTN 1189

Query: 122  EA 123
             A
Sbjct: 1190 RA 1191


>gi|330988050|gb|EGH86153.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 705

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G   L +     PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K       IP+I ++A           + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEHSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124


>gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 248

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D ++   L    +   G+      +G+ A+  A++  PDVI++DI L +  GLE
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++  S    +PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 78  VMRRVRGHS--PNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135


>gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 243

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++ED     +L    +   G+      +G    E A +   D+I++D+ L  ++
Sbjct: 1   MGQRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I  +++        P+I +TA   + +  +  K G + YI+KP  +S  +  +   +
Sbjct: 61  GLDILSRLRHQGLT--TPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 228

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I +D           ++  G++     +G +ALE  R   PDV+I+D+ + ++ 
Sbjct: 1   MDKKILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++      + I ++ +TA     D+    + G + ++SKP  L   +  IK  +
Sbjct: 61  GYEVCRRL---ESRKGIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALV 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|284050134|ref|ZP_06380344.1| response regulator receiver Signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
          Length = 372

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++ V+D+  N+ L   ++   GY      +G  AL+   +  P ++++D+ +  I G E
Sbjct: 14  HILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T++I+ +  L  IP++ +TA             G + +I KP+ +   +  ++  + 
Sbjct: 74  VTRRIRNNPNLPFIPILLITAHDQSS-VVEGLDAGADDFIRKPVEIDELLARVRSLLR 130


>gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 226

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   ++ T G+  +   +G  AL   R  +PD++++D+ L    
Sbjct: 1   MKSRVLVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVMLPGKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+ +S    +P+I +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GTQVAREIRAESG---VPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254796867|ref|YP_003081704.1| Response regulator/GGDEF domain protein PleD [Neorickettsia
           risticii str. Illinois]
 gi|254590103|gb|ACT69465.1| Response regulator/GGDEF domain protein PleD [Neorickettsia
           risticii str. Illinois]
          Length = 457

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D   N+K+    +    Y  +   +G+ A+ELARQH+PDVI++D+ + E+ 
Sbjct: 1   MTALILVVDDIPSNIKILEIKLTAKYYQVITASSGVAAIELARQHQPDVILLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  +++K D     IPVI VTA     ++      G + ++ KP         IK  +
Sbjct: 61  GFETCRRLKSDYSTMHIPVIIVTALNDIENKVEGLSSGADDFLVKPAKDFTLFIRIKSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 50.5 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 42  ARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGG 98
           A     DV+I++I L +   L +   IK   + + IP+IA+     + DE     I + G
Sbjct: 191 AEYTTFDVLIVNISLSK-DLLRLCSAIKSQLKTRSIPIIAI--VDDEDDESLITEITELG 247

Query: 99  CEAYISKPISLSIFMETIKKYIGE 122
              YI  P++ S F+  +   +  
Sbjct: 248 INDYICVPVNKSEFIARVTTQVKR 271


>gi|254409902|ref|ZP_05023682.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182938|gb|EDX77922.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1258

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 7/122 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N ++   L++  GY A    NG+E LE  ++   DV+ MD+Q+ E+ GLE
Sbjct: 962  RILLAEDNPVNQQVALHLLQRMGYRADVAGNGLEVLEALQRQPYDVVFMDVQMPEMDGLE 1021

Query: 64   ITKQIKED-------SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             +++I ++       ++ Q   +IA+TA AM GD E   + G + YISKPI +   +E +
Sbjct: 1022 ASRRICQEWCDLDGKTQSQRPRIIAMTANAMVGDREMCIEAGMDDYISKPIRIEELVEAL 1081

Query: 117  KK 118
            KK
Sbjct: 1082 KK 1083



 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 65/123 (52%), Gaps = 9/123 (7%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
           ++++IV+DN+ N K+     +  G      ++G++AL+   Q  + D+ I+D+Q+ E+ G
Sbjct: 816 QRLLIVDDNDTNRKILMRQAQVWGMECYAAQSGVQALDWLHQGERFDLAILDMQMPEMDG 875

Query: 62  LEITKQIKEDSELQEIPVIAVTAFA----MKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + + ++I++    Q +P++ +++         D ++        +++KPI  S   + + 
Sbjct: 876 VTLAQKIRKLPGCQTLPLVMLSSLGELQVDTPDVKQTFA----GFLTKPIKQSQLCDVLM 931

Query: 118 KYI 120
           + +
Sbjct: 932 QAM 934


>gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+I+ED +  +K+ +  +E  GY    + +G+  LEL ++  PD++++D+ L  +SG E
Sbjct: 9   TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+++   QE P++ +TA   + ++      G + Y+ KP S    +  +K  +  
Sbjct: 69  IARKIRKE---QETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRR 124


>gi|162450210|ref|YP_001612577.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161160792|emb|CAN92097.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 561

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+DN  N+ L  D +  SG+      +G  AL LAR+  PD+I++D+++  + G E
Sbjct: 8   TILIVDDNPRNLGLLSDTLTGSGFEVAVAVDGARALRLAREGMPDLILLDVKMDGMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAM-KGDEERIRKGGCEAYISKPISLSIFMETIKKY--I 120
             +++K D     IPVI +TA      D  +    G   Y++KP      +  ++ +  +
Sbjct: 68  TCRRLKGDPATAAIPVIFMTASTDLSADRVKGLNLGAVDYLAKPFLDEELLARVRVHTKL 127

Query: 121 GE 122
             
Sbjct: 128 RR 129


>gi|77360093|ref|YP_339668.1| response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875004|emb|CAI86225.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 331

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D   N+K+ R+++    Y     ++G  A+ L  +  P +I++DI + +++G E
Sbjct: 9   RILIVDDEPANLKVMREVLGNQ-YRMSFAKSGAAAIALLEKELPKLILLDIMMPDMNGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K +     IP+I VTA + + DE +  + G   YI+KPIS +I    +K ++
Sbjct: 68  VCQIVKANPATSHIPIIFVTALSDESDEFKGFELGAVDYITKPISPAIVRARVKTHL 124


>gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 224

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           ++KV+++ED E    + +  +E +GY  L   NG   LE    +K   +I++DI L +IS
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+E S+   +PV+ +TA   + D+    + G + Y+ KP S    +  +K  +
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 SR 119


>gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 227

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED+     + +  +    +      NG++ L+     KPD+II+DI L  ++G
Sbjct: 1   MKKILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHFWKPDLIILDIMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++  +I+E     ++P++ +TA     +       G + Y+ KP         ++  + 
Sbjct: 61  IQVCSKIRE---TSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes
           (paired with YvrG) [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 248

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++IV+D +  + + + ++E  GY  L    +  EA+ + + +K D+I++D+ +  +SG E
Sbjct: 17  ILIVDDEKAIVDMIKRVLEKEGYRNLLDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 76

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               I+E     + P+  +TA +   D+      G + YI+KP +       I+ ++  
Sbjct: 77  ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 132


>gi|296187341|ref|ZP_06855736.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|296047863|gb|EFG87302.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D E  ++  +  +E  G+I     +G EA+ LA++  P +II+DI L  I+G E
Sbjct: 10  HILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGYE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +IK+        +I +TA     D  +    G + Y+ KP S    +  I   +  +
Sbjct: 70  VCSEIKKWVNAS---IIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNS 126


>gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 1236

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 72/117 (61%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN++N K+ R  +   GY A    +G EAL+  +    D+++ D+ + E+ G E+
Sbjct: 981  ILVAEDNDINQKVIRQQLNLLGYAADIASDGKEALKRWQTGDYDLLLTDLHMPEMDGFEL 1040

Query: 65   TKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+      + IP++A+TA A+KG++ER  + G + Y+SKP+ L      ++KY+
Sbjct: 1041 TREIRTIEANQKRIPIVALTANALKGEKERCLQTGMDDYLSKPVQLEDLRAMLEKYL 1097


>gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 253

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           + ++V+D      +    +E   +      NG++AL LAR+  PDV+++D+ L  + G+E
Sbjct: 19  RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGLPGMDGIE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      +  V+ +TA + + D       G + Y++KP S    +  I+  +  
Sbjct: 79  VCRELR---TFSDAYVVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 134


>gi|225853711|ref|YP_002735223.1| response regulator SaeR [Streptococcus pneumoniae JJA]
 gi|225724034|gb|ACO19887.1| response regulator SaeR [Streptococcus pneumoniae JJA]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALEL ++   D+II D+ +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++       E P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 234

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     ++  GY  L+  +G EALE+ ++++  ++IMD+ +  + G
Sbjct: 5   MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E+S    IP+I ++A     D+      G + Y+ KP +    +  +K  + 
Sbjct: 65  IRATLKIREES---SIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|168483613|ref|ZP_02708565.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00]
 gi|172042917|gb|EDT50963.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00]
 gi|332205113|gb|EGJ19176.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALEL ++   D+II D+ +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++       E P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYLSPEQPFLFITAKTSEQDKIYGLNLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 235

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D +    L    +++ G+  +   +G+EA+ L R +  D+II+D+ +  ++G+E
Sbjct: 5   TILIVDDEKEIRDLVDIYLKSDGFNTINACDGLEAINLVRDNDIDLIILDVMMPNLNGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I+E   ++E+P+I ++A +   D+      G + Y++KP +    +  +K  +  
Sbjct: 65  TCLKIRE---IKEMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLRR 120


>gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED     K+    +    Y      +G  AL+     + DV+I+DI + +  GL 
Sbjct: 2   RILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ +  + +PV+ +TA     D  R    G   Y+ KP +    +  I+  +  
Sbjct: 62  VLREIRQKN--KHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118


>gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    ++   Y       G +AL+  R    D+ I+D+ L ++ G  I
Sbjct: 5   ILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSYDLAILDVMLPDMDGFSI 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I+++      P+I +TA     D+      G + Y++KP      +  +K  +  
Sbjct: 65  CRTIRQNYTW---PIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRR 119


>gi|299066501|emb|CBJ37691.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CMR15]
          Length = 230

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 57/114 (50%)

Query: 9   EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68
           ED     +L    ++ +G+  ++  N  +AL L     PD++++D  L   SG+   K++
Sbjct: 2   EDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMFAKEL 61

Query: 69  KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +   ++IP+I +TA + + D+      G + Y++KP S    +  IK  +  
Sbjct: 62  RANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRR 115


>gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  ++     A     G E L+  ++ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKENSL---PILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 66  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123


>gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K+++V+D++  ++L    I   GY  +   +G EAL     + PD  +II+D+ + E+ G
Sbjct: 2   KILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTN-PDIGLIILDLMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ KQ+++DS   +IP++ ++A     D+ +    G + Y++KP +    M  +K  + 
Sbjct: 61  MQVIKQVRKDS---DIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 628

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+         ++ +  Y      +G +  E  +    D++++DI+L  + G+ 
Sbjct: 2   RILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  Q++  +   ++P++ +TA   + D+ +    G + Y+ KP+ ++     I+  +  +
Sbjct: 62  LCHQLRSHNF--QVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRS 119



 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +VMIV+D+   +   + L++  G   +   +  +  +      PD++++DI++  ++G+E
Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ D   + +PV+ VTA   +   E++ + G + Y++KP + S     I   +  
Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKR 615



 Score = 35.9 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 19/46 (41%)

Query: 77  IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           IP +  T          + + G  A++ KP+++   +  ++    +
Sbjct: 445 IPTVVFTTQGDISKRVEVVRLGGSAFLEKPVTIERAIAVVRDVFRQ 490


>gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 240

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           KK++I++D E  +KL   +++  G+       +G     L ++  PD+I++DI L +  G
Sbjct: 8   KKILIIDDEEDILKLLSMVLKKEGFENIYTAEDGEGGFTLFKRISPDIILLDIMLPDEEG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++ S    +P++ ++A   + D       G + YI+KP S       IK  + 
Sbjct: 68  YEVCKKIRKSS---NVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILR 124

Query: 122 EA 123
            +
Sbjct: 125 RS 126


>gi|113477434|ref|YP_723495.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110168482|gb|ABG53022.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 351

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN+ N  L    ++  G++     +G +ALE+ R H  D++++DI + +++G ++
Sbjct: 8   VLVVDDNQFNRDLLARRVKRQGHMISSASDGFQALEMVRNHSFDLVLLDIMMPQMNGYQV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K D  L+ IPVI ++A        R  + G E Y+SKP +  +    I   +
Sbjct: 68  LETLKADPALRHIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPILLKARINACL 123


>gi|293370383|ref|ZP_06616937.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292634531|gb|EFF53066.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1470

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1197 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALKYLPDIIISDVMMPEKDGIEMT 1255

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1256 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1310


>gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
 gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K+++VED +    L    +    +  +   +G EA     Q+   + I+D+ L +I+G
Sbjct: 1   MEKILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVMLPDITG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I++       P+I +TA + + D+      G + YI+KP      +  +K  I 
Sbjct: 61  FDLCKIIRKKHHY---PIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 223

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEIS 60
           ++KV+++ED E    + +  +E +GY  L   NG   LE    +    +I++DI L +IS
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+E S+   +PV+ +TA   + D+    + G + Y+ KP S    +  +K  +
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 AR 119


>gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium
            autotrophicum HRM2]
 gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium
            autotrophicum HRM2]
          Length = 1272

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 71/121 (58%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +V++VEDNE+N ++  +++   G       NG EA++    +  D ++MD+Q+  + G 
Sbjct: 907  ARVLLVEDNEINQEVAMEILAAGGVTVSLAANGREAVDAVGMNHFDAVLMDLQMPVMDGY 966

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              T+ I++D   +++P+IA+TA AM  D ++ R  G  A+I+KPI   +   T+ ++I  
Sbjct: 967  TATRTIRQDVRFKDLPIIAMTAHAMADDPDKSRHAGMNAHITKPIDPEVLYSTLAEWISA 1026

Query: 123  A 123
            A
Sbjct: 1027 A 1027



 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 69/124 (55%), Gaps = 5/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQEI 59
           K ++V+DN  + ++F+ ++E   +      +G E LE   +       D+++MD +L  I
Sbjct: 757 KALVVDDNATSREIFQSMLECFSFDVTLAASGEEGLEEIGKSVGGRPYDIVVMDWKLPGI 816

Query: 60  SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            G+E +K+IK+++ L  IP VI V+A+A +    R    G + ++ KPI+ S+  +TI  
Sbjct: 817 DGIEASKRIKKNTGLTRIPLVILVSAYAREEIMWRAEAAGLDGFLIKPINASVMFDTIMN 876

Query: 119 YIGE 122
            + +
Sbjct: 877 ALAK 880


>gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
 gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
          Length = 222

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++      +  + ++G+      +G  A +L +     ++++D+ L  +SGLE
Sbjct: 2   RILLVEDHDELSLWLQKALSSTGFAVDIASDGAIADQLLQTESYSLVVLDVSLPRLSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  Q+++    QEIPV+ +TA +   D  +    G + Y++KP  L+     I+  +  +
Sbjct: 62  VLAQMRK--RGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALLRRS 119


>gi|168180268|ref|ZP_02614932.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182668736|gb|EDT80714.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +   +     ++  G    + ++G++AL L   H   +IIMDI + ++ G++
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+E+   + IP+I ++A +   D+      G + Y++KP ++   +  +K  +  
Sbjct: 65  ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|229586486|ref|YP_002844987.1| response regulator PleD [Rickettsia africae ESF-5]
 gi|228021536|gb|ACP53244.1| Regulatory components of sensory transduction system [Rickettsia
           africae ESF-5]
          Length = 450

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 65/118 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D+I++D+ + E+ G
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D E   IPV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  CEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIKKMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 211 RISVILRGKAEINGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270


>gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+    ++   L+E+ GY      NG   + L R   PD++++D+ L  + G+ 
Sbjct: 2   RILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVMLPGLDGVS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++E+S   ++P+I ++A     D     + G + Y++KP   S+ +  +K  +  
Sbjct: 62  VCRLLREES---DVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRR 117


>gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
 gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
          Length = 222

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++      +  + +SG+      +G  A +L +  + +++++D+ L  +SGLE
Sbjct: 2   RILLVEDHDELSLWLQKALSSSGFAVDLASDGAIADQLLQTERYELVVLDVSLPRMSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  Q+++    QE PV+ +TA +   D  +    G + Y++KP  ++     ++  +  +
Sbjct: 62  VLAQMRK--RHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALLRRS 119


>gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
          Length = 243

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGIT--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 859

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN        D++ ++G+  +   NG EALE     +P+VI+ D+ + E+ G E
Sbjct: 474 RVLVVEDNPDMRSYLADIL-SAGHEIVLATNGREALESIAAKRPNVIVSDVMMPEMDGFE 532

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IG 121
           + +++K D  L++IPV+ +TA A   +       G + Y+SKP         ++    + 
Sbjct: 533 LVRRLKGDPALRDIPVLLLTARASGAEAVGGLDVGADEYMSKPFDPLELRARVRAAERLH 592

Query: 122 EA 123
            A
Sbjct: 593 RA 594


>gi|153870039|ref|ZP_01999521.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152073492|gb|EDN70476.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 268

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           KKV++V+D+  N       +E+     +   NG EAL    +H   D+++MDI + E+ G
Sbjct: 148 KKVLLVDDDVRNTFALMTFLESKNMEVIVAENGKEALAALEEHPNIDIVLMDIMMPEMDG 207

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E   +I+E     ++P+IA+TA AMKGD+ +  + G   Y++KP+     +  I+ ++
Sbjct: 208 YEAIHEIREQPRFHKLPIIAITAKAMKGDKVKCIEAGASDYLAKPVDTDKLVSLIRVWL 266



 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 44/83 (53%)

Query: 2  LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
          +K +++V DNE + +    ++++             AL+  +    D +I+D+ +++ SG
Sbjct: 1  MKDLLVVADNEEHQQNILKVVKSEQVKTQVITTLERALQEVQLADFDCLILDVDIEQQSG 60

Query: 62 LEITKQIKEDSELQEIPVIAVTA 84
          ++  +Q+++   L +IP+I  T 
Sbjct: 61 IKFLEQLQQQEHLSQIPIIIYTG 83


>gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568209|ref|ZP_04845620.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251842282|gb|EES70362.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1472

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1216 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1274

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + +GE
Sbjct: 1275 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLGE 1333


>gi|320101577|ref|YP_004177168.1| winged helix family two component transcriptional regulator
           [Isosphaera pallida ATCC 43644]
 gi|319748859|gb|ADV60619.1| two component transcriptional regulator, winged helix family
           [Isosphaera pallida ATCC 43644]
          Length = 236

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++++D    +++    +E  G+  +   +G + L  A+   PD+I++D+ L   
Sbjct: 1   MSKPRILVIDDERSLVEVLAINLEREGFEVMTAFDGQDGLRQAQVKLPDLIVLDLMLPVK 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ ++++ DS  +++PVI +TA   + DE      G + Y+SKP  + + ++ IK  
Sbjct: 61  PGLEVCRELRADSRTRDVPVIMLTAKTEETDELVGFAMGADDYVSKPYRMKVLIQRIKTQ 120

Query: 120 IGE 122
           +  
Sbjct: 121 LNR 123


>gi|309811181|ref|ZP_07704976.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
 gi|308434867|gb|EFP58704.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V+IV+D+    ++   ++   GY      +G  AL   R  KPD++++D+ L   +
Sbjct: 1   MMNRVLIVDDDPALAEMLGIVLRGEGYHVTHCGDGTSALATFRDAKPDLVLLDVMLPGKN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           G+E+ + I+ +S   ++P++ +TA     D     + G + Y++KP   + 
Sbjct: 61  GVEVCRAIRAES---DVPIVMLTARTDTLDVVAGLEAGADDYVNKPFKPAE 108


>gi|298291963|ref|YP_003693902.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296928474|gb|ADH89283.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 239

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + IV+D+     L    ++  GY      N      L  ++  D++++DI +    GL 
Sbjct: 6   HIAIVDDHRDIRDLVGKYLQKHGYRTSLAENAAAFRRLLDRNAIDLVVLDIMMPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++E S    +PVI +TA   + D     + G + Y++KP +    +  IK  +  
Sbjct: 66  LCRYLRESS---TVPVIMLTAMTEETDRIVGLELGADDYLAKPFNPRELLARIKAVLRR 121


>gi|237734182|ref|ZP_04564663.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|229382742|gb|EEO32833.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 218

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED +   +L +  +  +GY      +G  A+EL   ++ D+I++DI L EI+G
Sbjct: 1   MNKILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYNQFDLILLDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+       IPVI +TA     D  +  K G E YI KP  +   +  ++  + 
Sbjct: 61  YELMEYIRPLE----IPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 66  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123


>gi|219854352|ref|YP_002471474.1| hypothetical protein CKR_1009 [Clostridium kluyveri NBRC 12016]
 gi|219568076|dbj|BAH06060.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 657

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/120 (40%), Positives = 79/120 (65%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IVEDNE+NM++   +++  GY  L   NG +AL++      D+I+MDIQ+ E++GL
Sbjct: 538 KNILIVEDNEINMQIACGMLKKLGYNFLSAYNGNQALKILETMSVDLILMDIQMPELNGL 597

Query: 63  EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E TK I+++   E   +P+IA+TA+AM GD E   +GG + YISKP  + I    +++++
Sbjct: 598 ETTKIIRKNELHEKCHMPIIAMTAYAMPGDRELCIEGGMDDYISKPFDIYILKNILQRFL 657


>gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
 gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 652

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED+ +   +    +    YI     +G    + A+    D+I+MD+ L +  G+ 
Sbjct: 2   KILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      ++P++ +TA   K D       G + Y++KP+ L+     ++  +  
Sbjct: 62  LCRRLRAQG--SQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRR 118



 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 64/118 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+ + ++    L++  G       N +E   +    +PD++I+D+++ + SG+E+
Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++ D E Q +P+I +TA   +   +++   G + +++KP+ +   +  I   +  
Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLER 499


>gi|170741015|ref|YP_001769670.1| response regulator receiver protein [Methylobacterium sp. 4-46]
 gi|168195289|gb|ACA17236.1| response regulator receiver protein [Methylobacterium sp. 4-46]
          Length = 128

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 70/122 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VEDNELN  +    ++ SG+  L   +G +A++ A    PD+I+MD+ L  + G
Sbjct: 1   MTRVLLVEDNELNRDMLSRRLKRSGFEVLFAEDGQQAVDTAAAEMPDLILMDLSLPTMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+ ++ + +   + VIA+T+ AM GD ER    GC+ Y +KP+ L   +  +   + 
Sbjct: 61  FEATRALRANEKTAGLRVIALTSHAMSGDRERALAAGCDDYDTKPVDLPRLLGKMHALLD 120

Query: 122 EA 123
            A
Sbjct: 121 PA 122


>gi|153953733|ref|YP_001394498.1| sensor protein [Clostridium kluyveri DSM 555]
 gi|146346614|gb|EDK33150.1| Predicted sensor protein [Clostridium kluyveri DSM 555]
          Length = 652

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/120 (40%), Positives = 79/120 (65%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IVEDNE+NM++   +++  GY  L   NG +AL++      D+I+MDIQ+ E++GL
Sbjct: 533 KNILIVEDNEINMQIACGMLKKLGYNFLSAYNGNQALKILETMSVDLILMDIQMPELNGL 592

Query: 63  EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E TK I+++   E   +P+IA+TA+AM GD E   +GG + YISKP  + I    +++++
Sbjct: 593 ETTKIIRKNELHEKCHMPIIAMTAYAMPGDRELCIEGGMDDYISKPFDIYILKNILQRFL 652


>gi|306828529|ref|ZP_07461724.1| response regulator [Streptococcus mitis ATCC 6249]
 gi|304429328|gb|EFM32413.1| response regulator [Streptococcus mitis ATCC 6249]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + +    +  +GY  L   +G E LEL R+   D+II DI +  + 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++       + P +  TA   + D+      G + +I KP S    +  +   +
Sbjct: 61  GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 237

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+    +L +  +   GY      +G + + +  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I ++A + +       + G + Y++KP S+   +  +K     
Sbjct: 65  EICR--RARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRR 122


>gi|260171767|ref|ZP_05758179.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
 gi|315920080|ref|ZP_07916320.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693955|gb|EFS30790.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1511

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGASKALKYLPDIIISDVMMPEKDGIEMT 1296

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351


>gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
 gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E      +  ++  G+    + +G +   LA  +  D+II+D+ L + +GL 
Sbjct: 2   KILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLMLPKKNGLV 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        PV+ +TA     D+ R    G + Y++KP +    +  ++  +  
Sbjct: 62  VCRELRASGV--STPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRR 118


>gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium]
 gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium]
 gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium]
 gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium]
 gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis]
 gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis]
 gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium]
 gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR
 gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium]
 gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium]
 gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium]
 gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium]
 gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus]
 gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis]
 gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium]
 gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium]
 gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium]
 gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium]
 gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium]
 gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium]
 gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium]
 gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium]
 gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis]
 gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis]
 gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis]
 gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis]
 gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium]
 gi|383762|prf||1904198A vanR gene
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D      L    ++   Y   +     EALE   + + D+ I+DI L   S
Sbjct: 1   MSDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I++       P+I +T    + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLTICQKIRDKHTY---PIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
            48]
 gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
            48]
          Length = 1152

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 73/126 (57%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQL 56
            +++++VED+  N+    ++ E  G +    RNG EAL+         +   D+++MD+ +
Sbjct: 1027 RRLLVVEDDVRNVYAVTNIFEPLGAVVQIARNGREALDALEVAQASAETAIDLVLMDVMM 1086

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ GL  T++I++  E +++PVI +TA AMK D+ER  + G   Y++KP+ +   +  +
Sbjct: 1087 PEMDGLTATREIRKRPEWKKLPVIMLTAKAMKDDQERCLEAGANDYMAKPLDVEKLVSLV 1146

Query: 117  KKYIGE 122
            + ++  
Sbjct: 1147 RVWVPR 1152



 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 3   KKVMI-VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           K++++ VED+    ++  +L +  G+  L      +A+ + RQ+ P  +++D+ L + SG
Sbjct: 758 KRLLLAVEDDPSFARILYELAQDLGFQCLIASTAEDAMLMVRQYVPSAVVLDLGLPDHSG 817

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME------- 114
           L +  ++K D + + IPV  V+A             G   Y+ KP+     +E       
Sbjct: 818 LSVLDRLKRDPKTRHIPVHVVSAND---YMHAALSMGAIGYMLKPVKRDELVEAFTQLET 874

Query: 115 TIKKYIGE 122
            ++K +  
Sbjct: 875 RLEKRMRR 882



 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++V+IVED+ +       L++T     +      E L   +    D +++D+ L + SG
Sbjct: 880 MRRVLIVEDDAVQRDSVMALLKTQDVETVAVGTAAECLAELKAQTYDCMVLDLSLPDASG 939

Query: 62  LEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRK 96
             + + +  + +    PVI  T       DE+++R+
Sbjct: 940 YSLLETLSTEQDYAFPPVIVYTGRDISAADEQKLRR 975


>gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  D+ ++D+ L  I G
Sbjct: 4   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDLALLDVMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 64  FQVCKSIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 233

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|209528218|ref|ZP_03276685.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209491340|gb|EDZ91728.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 372

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+D+  N+ L   ++   GY      +G  AL+   +  P ++++D+ +  I G E+
Sbjct: 15  ILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+ +  L  IP++ +TA             G + +I KP+ +   +  ++  + 
Sbjct: 75  TRRIRNNPNLPFIPILLITAHDQSS-VVEGLDAGADDFIRKPVEIDELLARVRSLLR 130


>gi|254464929|ref|ZP_05078340.1| response regulator receiver modulated serine phosphatase
           [Rhodobacterales bacterium Y4I]
 gi|206685837|gb|EDZ46319.1| response regulator receiver modulated serine phosphatase
           [Rhodobacterales bacterium Y4I]
          Length = 417

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D+ L  ++    ++  G+  ++  +G  A+E+ +   PD+I+ D  +  ++GL
Sbjct: 13  RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICQAETPDLILSDWMMPGMNGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119
           E  +  +  S       I +T+ + K +       G + +++KP+S       I   ++ 
Sbjct: 73  EFCRAFRSRSSEDYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 132

Query: 120 IG 121
           + 
Sbjct: 133 LR 134


>gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 234

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+   ++  R  +  +GY+     +G   +E A     D+I++D+ L E+ GL 
Sbjct: 2   RILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLLPELDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   +  + PV+ +TA     D  +    G + Y+ KP   +  +  ++  +  
Sbjct: 62  VLRQLR--GQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRR 118


>gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  V+IV+D +    L   ++  S        +G EA ++  + K D++++D+ +    
Sbjct: 1   MMTTVLIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREKIDLVLLDVMMPHED 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+  S    +P+I +TA     D+ +    G + YI KP +       I   +
Sbjct: 61  GFVVCQSIRAMS---NVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|167622661|ref|YP_001672955.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella halifaxensis HAW-EB4]
 gi|167352683|gb|ABZ75296.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella halifaxensis HAW-EB4]
          Length = 339

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   N+ +   ++    Y      +G +AL LA +  PD+I++D+ +  ++G 
Sbjct: 4   ATILVVDDTPENIDILVGILGGD-YRVKVAIDGPKALALASKTTPDLILLDVMMPGMNGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K++K++     IPVI VTA +   DE +  + G   YI+KP+S  +    +K ++
Sbjct: 63  EVCKRLKQEPLTCHIPVIFVTALSDVADETQGFELGAVDYITKPVSAPVVKARVKTHL 120


>gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae AM-19226]
 gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae AM-19226]
          Length = 1331

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 68/115 (59%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +     +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|257888948|ref|ZP_05668601.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257893831|ref|ZP_05673484.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|293378616|ref|ZP_06624776.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|257825004|gb|EEV51934.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257830210|gb|EEV56817.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|292642747|gb|EFF60897.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 222

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED+     L+R ++E +G+  +   NG +AL+     + ++II DI + ++ G
Sbjct: 1   MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  S   + PV+ +TA A   D++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 61  YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 224

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           ++KV+++ED E    + +  +E +GY  L   NG   LE    +K   +I++DI L +IS
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+E S+   +PV+ +TA   + D+    + G + Y+ KP S    +  +K  +
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 SR 119


>gi|238792322|ref|ZP_04635956.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           intermedia ATCC 29909]
 gi|238728248|gb|EEQ19768.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           intermedia ATCC 29909]
          Length = 309

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+ +N+++      +  Y      NG +AL++     PD+I++DI++  +SG E
Sbjct: 12  KILIVDDHPINIQMLYQAFSSD-YHVCMATNGKQALDVCISQHPDLILLDIEMPGMSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  ++K   + Q+IPVI VTA   +  E R    G   +ISKPI+ +     +K ++
Sbjct: 71  VCARLKASPDTQDIPVIFVTAHIDEETETRCFSEGAVDFISKPINRNTVRARVKTHL 127


>gi|255280860|ref|ZP_05345415.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
 gi|255268797|gb|EET62002.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++++ED+E   K+ ++ +  +GY  +   +G+E +    +H  D++++D+ L +I G
Sbjct: 1   MYQILVIEDDEDIQKILKNYLCGNGYGVVLAGDGVEGIHKFHEHTCDLVLLDVMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+ +SE   +PV+ +TA   +  + R      + YI+KP S+ + +  I   + 
Sbjct: 61  FGVLELIRRESE---VPVMMLTALEEEEYQIRGLDLKADDYITKPFSVQVLLRKIAAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|116253196|ref|YP_769034.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257844|emb|CAK08942.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 233

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D+     L    +  +G+      +G EA         D+IIMD+ +   SG+
Sbjct: 12  AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T+ ++    ++ +P+I +TA A  G+     + G + Y+SKP      +  I   +  
Sbjct: 72  EVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 223

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED         + ++  GY     R+G + L LA +   DVI++D+ + ++ G E+
Sbjct: 3   ILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLALEFDFDVIVLDVMMPKMDGWEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++++   + PV+ +TA     D  +  + G + Y+ KP S +  +  ++     
Sbjct: 63  LRRLRKET---DTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRR 117


>gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O1 biovar El Tor str. N16961]
 gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae B33]
 gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MO10]
 gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
 gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae O1 biovar El Tor str. N16961]
 gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae B33]
 gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae MO10]
 gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
          Length = 1331

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 68/115 (59%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +     +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109



 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + +     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLD-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 260

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  ALE   Q   D++++D+ L  + G
Sbjct: 36  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDG 95

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 96  LEVARRLRAEGL--PVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 153

Query: 122 E 122
            
Sbjct: 154 R 154


>gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 260

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  ALE   Q   D++++D+ L  + G
Sbjct: 36  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDG 95

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 96  LEVARRLRAEGL--PVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 153

Query: 122 E 122
            
Sbjct: 154 R 154


>gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family)
           [NC10 bacterium 'Dutch sediment']
          Length = 244

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L  D +   G       +G +  E A   +  ++++D+ L  ISG
Sbjct: 1   MHRILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEHALVVLDVMLPGISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+       +PV+ +TA     D     + G + Y+SKP +    +  I+    
Sbjct: 61  FEVLRRIRA---GSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAIQR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 237

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+ VED+++  +  +  +E  G+      +G+E LE  R  +PD+ ++D+ +  + G+ 
Sbjct: 5   HVLFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRADRPDIALLDVMVPGLDGVS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S    +PVI ++A A   D     + G + Y++KP   ++ +  I+  +  
Sbjct: 65  LCRRIRDES---TVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120


>gi|209525668|ref|ZP_03274205.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209493837|gb|EDZ94155.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 592

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ L  +++   GY   +  NG  AL   +  +PD+I++DI +  + G ++
Sbjct: 8   ILVVDDKPENLHLLSEILMLEGYNVRKAVNGKMALMAVKTVQPDLILLDIMMPGMDGYQV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++K +  L ++PVI ++A     D+ +    G   YI+KP  +   +  ++ ++
Sbjct: 68  CKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDYITKPFQMEEVLVRVQNHL 123


>gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+       D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     IP++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRAEGHT--IPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|183597003|ref|ZP_02958496.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
 gi|188023658|gb|EDU61698.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
          Length = 239

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KV++V+D+     L    +   G+      N  +   +  +    +I++D+ L    G
Sbjct: 4   SYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++  +    IP+I VTA   + D     + G + YI KP +    +  I+  + 
Sbjct: 64  LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|148379575|ref|YP_001254116.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289059|emb|CAL83149.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +   +     ++  G    + ++G++AL L   H   +IIMDI + ++ G+ 
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIN 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+E+   + IP+I ++A +   D+      G + Y++KP ++   +  +K  +  
Sbjct: 65  ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|15900027|ref|NP_344631.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111656923|ref|ZP_01407745.1| hypothetical protein SpneT_02001832 [Streptococcus pneumoniae
           TIGR4]
 gi|116516719|ref|YP_815548.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148985429|ref|ZP_01818634.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148987813|ref|ZP_01819276.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148993923|ref|ZP_01823306.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148996490|ref|ZP_01824208.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149001833|ref|ZP_01826806.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007940|ref|ZP_01831518.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149017756|ref|ZP_01834215.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168486666|ref|ZP_02711174.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00]
 gi|168489445|ref|ZP_02713644.1| response regulator SaeR [Streptococcus pneumoniae SP195]
 gi|168492607|ref|ZP_02716750.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04]
 gi|168493781|ref|ZP_02717924.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06]
 gi|168577082|ref|ZP_02722911.1| response regulator SaeR [Streptococcus pneumoniae MLV-016]
 gi|169834091|ref|YP_001693605.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6]
 gi|182683051|ref|YP_001834798.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|194397353|ref|YP_002036799.1| response regulator [Streptococcus pneumoniae G54]
 gi|221231023|ref|YP_002510175.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225855866|ref|YP_002737377.1| response regulator SaeR [Streptococcus pneumoniae P1031]
 gi|225860118|ref|YP_002741627.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649600|ref|ZP_04523852.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974]
 gi|237821536|ref|ZP_04597381.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230008|ref|ZP_06963689.1| response regulator SaeR [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254523|ref|ZP_06978109.1| response regulator SaeR [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501871|ref|YP_003723811.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303254821|ref|ZP_07340921.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303259126|ref|ZP_07345104.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303260883|ref|ZP_07346832.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263210|ref|ZP_07349133.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|303267317|ref|ZP_07353178.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303269588|ref|ZP_07355349.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|307066757|ref|YP_003875723.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307126308|ref|YP_003878339.1| response regulator SaeR [Streptococcus pneumoniae 670-6B]
 gi|5830538|emb|CAB54578.1| response regulator [Streptococcus pneumoniae]
 gi|14971549|gb|AAK74271.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|116077295|gb|ABJ55015.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147757065|gb|EDK64104.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147760291|gb|EDK67280.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147760563|gb|EDK67538.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147922387|gb|EDK73507.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147926277|gb|EDK77350.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147927630|gb|EDK78656.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147931320|gb|EDK82298.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168996593|gb|ACA37205.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6]
 gi|182628385|gb|ACB89333.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|183570301|gb|EDT90829.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00]
 gi|183572088|gb|EDT92616.1| response regulator SaeR [Streptococcus pneumoniae SP195]
 gi|183573247|gb|EDT93775.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04]
 gi|183576175|gb|EDT96703.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06]
 gi|183577322|gb|EDT97850.1| response regulator SaeR [Streptococcus pneumoniae MLV-016]
 gi|194357020|gb|ACF55468.1| response regulator TCS08 [Streptococcus pneumoniae G54]
 gi|220673483|emb|CAR67954.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225725157|gb|ACO21009.1| response regulator SaeR [Streptococcus pneumoniae P1031]
 gi|225727262|gb|ACO23113.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237466|gb|ADI68597.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301793386|emb|CBW35751.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301799255|emb|CBW31775.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801044|emb|CBW33711.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598258|gb|EFL65304.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302637720|gb|EFL68206.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639544|gb|EFL70001.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302640862|gb|EFL71248.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302643168|gb|EFL73454.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|302646983|gb|EFL77207.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|306408294|gb|ADM83721.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306483370|gb|ADM90239.1| response regulator SaeR [Streptococcus pneumoniae 670-6B]
 gi|327390491|gb|EGE88831.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332075745|gb|EGI86212.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332076537|gb|EGI86999.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332077390|gb|EGI87851.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332202007|gb|EGJ16076.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332204102|gb|EGJ18167.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALEL ++   D+II D+ +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++       E P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 236

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    ++L    ++  G+  +   +G E L++AR+ +PD  I+D+ +  + G E
Sbjct: 10  KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++ +    + PV+ +TA     +       G + Y++KP SL   +  ++  +  
Sbjct: 70  LLTKLRAEGL--DGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126


>gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 224

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED     +L    +E  GY      +G EAL        D  I+DI +   +G E
Sbjct: 2   RILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRRNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++     +E PV+ +TA     D       G + Y+ KP      +  I+    +
Sbjct: 62  VLKRLRSLG--KETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRK 118


>gi|224367373|ref|YP_002601536.1| putative two-component response regulator receiver protein
           (phosphoserine phosphatase) [Desulfobacterium
           autotrophicum HRM2]
 gi|223690089|gb|ACN13372.1| putative two-component response regulator receiver protein
           (phosphoserine phosphatase) [Desulfobacterium
           autotrophicum HRM2]
          Length = 373

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 56/117 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+DN +N+K     +   GY  +   NG  A  +A   KPD+I++DIQ+    G E
Sbjct: 8   TILVVDDNLVNLKFMEMTLSKEGYRVITADNGTSAKTIAVAEKPDLILLDIQMPGGDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +KE      IPVI +T       + +    G   Y++KP      +  +  ++
Sbjct: 68  VIRFLKETPGTCTIPVIFLTNMTDVDSKLKGFDLGAVDYVTKPFHPLEVLARVATHL 124


>gi|119488980|ref|ZP_01621915.1| Putative diguanylate phosphodiesterase (EAL domain) with Response
           Regulator Receiver modulation [Lyngbya sp. PCC 8106]
 gi|119454936|gb|EAW36079.1| Putative diguanylate phosphodiesterase (EAL domain) with Response
           Regulator Receiver modulation [Lyngbya sp. PCC 8106]
          Length = 234

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 66/119 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED+E       +L+    Y  +   +G + LELA++ +PD+II DI +    G
Sbjct: 1   MKKILVIEDDEPIRMSILELLMIEQYQGIGAEDGYQGLELAKEVQPDLIICDIMMPGFDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +  +++++S    IP I +TA   + D+    + G + YI+KP + +  +E +K  +
Sbjct: 61  YAVLNELQQESGTANIPFIFLTAKTERHDQRMGMELGADDYITKPFTTTELLEAVKTRL 119


>gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++I++D+    K+ RD      +      +G + LE     + D+II+D+ L + +GL
Sbjct: 4   KKILIIDDDLQITKILRDYFNYENFEVFVAHDGQKGLEKINNLEIDIIILDLMLPKKNGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I +Q+K      +IP+I ++A   + D  +  + G + Y++KP S    +  +K  +  
Sbjct: 64  DICRQLK---PHNKIPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLKR 120


>gi|299136566|ref|ZP_07029749.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
 gi|298601081|gb|EFI57236.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
          Length = 931

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 2/115 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDN +N KL + L+E  G+      NG EAL    +   D+++MD+Q+ E+ GLE 
Sbjct: 684 ILLAEDNAINQKLAKRLLEKRGHKVSVAENGKEALAALEKSSFDLVLMDVQMPEMDGLEA 743

Query: 65  TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           T+ ++E  +L     PV+A+TA AMKGD+ER  + G + Y+SKPIS       ++
Sbjct: 744 TRTLREREKLTGFHCPVVAMTALAMKGDQERCLEAGMDGYLSKPISSQALDAMLE 798



 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
           KV+IV+DN  N ++   L+   G +      G EAL             D+++ D+Q+  
Sbjct: 533 KVLIVDDNRTNRRILEGLLTRWGMVPTVVSGGEEALAKLHAAVQSGVPYDLVLTDMQMPN 592

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G  + + IK+ +++    ++ +T+ + +GD  R  + G  AY+ KP+      + I +
Sbjct: 593 MDGFGLVENIKQKADISTATIMMLTSGSKRGDTARCAELGIAAYLLKPVRQVELRQAILR 652

Query: 119 YI 120
            +
Sbjct: 653 VL 654


>gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei
           87.22]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|218261685|ref|ZP_03476420.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM
            18315]
 gi|218223865|gb|EEC96515.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM
            18315]
          Length = 1304

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 57/117 (48%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             VMIVED        +D +  S        +G +ALE+ +   PD+++ D+ +  ++G E
Sbjct: 1055 TVMIVEDEPELRNYLKDELSGSFKEVYVAEDGRQALEMIQAKLPDLVVSDVMMPYMNGFE 1114

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK D  +  IPVI +TA        +  K G + Y+ KP  L   +  ++  +
Sbjct: 1115 LCRRIKSDVGISHIPVILLTARTDNESTVQGYKLGADMYVPKPFDLGFLLAVLRNQL 1171


>gi|160886890|ref|ZP_02067893.1| hypothetical protein BACOVA_04904 [Bacteroides ovatus ATCC 8483]
 gi|156107301|gb|EDO09046.1| hypothetical protein BACOVA_04904 [Bacteroides ovatus ATCC 8483]
          Length = 1511

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGASKALKYLPDIIISDVMMPEKDGIEMT 1296

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351


>gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis H37Rv]
 gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 02_1987]
 gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T92]
 gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis 210]
 gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium tuberculosis H37Rv]
 gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis W-148]
 gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 253

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +   G+      +G  A+        D +++D+ L  I G E
Sbjct: 24  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++        PV+ +TA     D      GG + Y++KP +L      ++     
Sbjct: 84  VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D+    ++   +++  G       +G +A+   R  +PD++++D+ L    
Sbjct: 1   MRGRVLVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLMLPGTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +QI+ +S    +P++ +TA +   D     + G + Y+ KP      +  ++  +
Sbjct: 61  GMEVCRQIRAESG---VPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARL 117

Query: 121 GEA 123
             A
Sbjct: 118 RSA 120


>gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 233

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+ VED+++  +  +  +E  G+      +G+  L+  R  +PD+ ++D+ L  + G+ 
Sbjct: 5   HVLFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQRPDIALLDVMLPGMDGVS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S    +PVI ++A A   D     + G + Y++KP   S+ M  I+  +  
Sbjct: 65  LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLRR 120


>gi|323136350|ref|ZP_08071432.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322398424|gb|EFY00944.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 256

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D++    L    +   GY+     N  EA E  R    D+I++D+ +   SG 
Sbjct: 21  AHILVVDDDKRIRTLLSRYLANEGYLVSSAANAQEASERLRDLAFDLIVLDVMMPGESGK 80

Query: 63  EITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   +++E  E Q   P++ +TA A   D     + G + Y++KP         I   + 
Sbjct: 81  QFAARLRESGEPQASAPILMLTALAETADRVEGLEAGVDDYLAKPFDPRELSLRIASILR 140

Query: 122 EA 123
            +
Sbjct: 141 RS 142


>gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii
            NCTC 11218]
          Length = 1268

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 64/112 (57%)

Query: 8    VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
            VEDN  N  +  +L+   G   ++  +G+EAL    Q +  +++MD+Q+ ++ G E T++
Sbjct: 930  VEDNPTNRLVATELLSQQGATIVEAESGVEALAALDQQEFSLVLMDVQMPDMDGYETTRR 989

Query: 68   IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            I++ +   ++P++A+TA AM  D+      G   +I+KP  +   +E I +Y
Sbjct: 990  IRQMAHFADLPILAMTANAMPEDKVACLNAGMNDHIAKPFHIGEVVEKILQY 1041



 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59
           V+IVEDN     +F DL++  G       +   AL+   Q        D++ +D +L  +
Sbjct: 779 VLIVEDNNTARLIFDDLLQRLGCHVTAVADAEHALDTIEQADANGQPFDLLFIDWKLPGM 838

Query: 60  SGLEITKQIKEDSELQEIP-VIAVTAFAMK------GDEERIRKGGCEAYISKPISLSIF 112
            GL +T+ ++    L + P V+  TAF  +       + + +     +A + KP++  + 
Sbjct: 839 DGLSLTQSVRHGMALSKTPLVVMATAFGRELLDEHLEETQSLL----DALLVKPVTPDMV 894

Query: 113 METI 116
             T+
Sbjct: 895 KNTL 898


>gi|325104431|ref|YP_004274085.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324973279|gb|ADY52263.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1146

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            K V++V+D+  N+     +++  G       +G+EALE   +  K D+++MDI +  + G
Sbjct: 1027 KTVLLVDDDMRNIFSISAVLDQCGLKVEIANDGVEALERLEELQKVDIVLMDIMMPRMDG 1086

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  + I+++ E + +P+IA+TA AMK D E+    G   YI+KPI     +  +K +I
Sbjct: 1087 YETMENIRKNIEWKNLPIIALTAKAMKDDREKCISAGANDYITKPIDNDQLISIMKIWI 1145



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IVED+ +   L +D  E  G+  +Q  +G   +     H PD I++D+ L  I G  + 
Sbjct: 762 LIVEDDVVFNDLLKDYAEKGGFDTVQYYSGEGVVHEIENHLPDAILLDVMLPGIDGWHVL 821

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K+IK +  +  IPV  ++A     D+ + +K G  +++ KP+  S   +  K Y+  
Sbjct: 822 KEIKNNQNIAHIPVHIMSA-GDFSDK-KAQKEGAISFLKKPLDYSELDKIFKNYLNR 876



 Score = 86.7 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV++VED +      + L +      +Q  +G EAL        D +I+D+ L +I+G+
Sbjct: 883 RKVLLVEDQKDQSDALKALFKDKNIDVVQALSGKEALSALNNESFDCVILDLNLPDINGM 942

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           ++  QIKE    +++PVI  TA  ++ D+ +
Sbjct: 943 DLLAQIKEKD--KKVPVIINTAMELEPDKLK 971


>gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 226

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED     +    ++   G+       G +AL    +   D++++D+ L  +SG
Sbjct: 1   MTRVLVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGADIVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++      +P+I V+A   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCRQLRQ---TSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|297563588|ref|YP_003682562.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848036|gb|ADH70056.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 234

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++ ED+     L R  +E  G+      +G  A+    + +PD++++D+ +  +S
Sbjct: 1   MCAHVLVAEDDVNQADLIRRYLEHEGHFVRVVHDGRAAVAAHHRDRPDLVVLDVMMPVMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+  + ++ +S   ++ V+ +TA + + D       G + Y++KP S    M  ++  +
Sbjct: 61  GLDACRALRAES---DVAVLMLTARSTEEDLLTGLDLGADDYVTKPYSPRELMARVRTLL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 236

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+
Sbjct: 11  MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATYDLIVLDIMIPGIN 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 71  GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
 gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           K+M+V+D     KL +D ++   +  ++  +G EAL++  +     +II D+ + +I+G 
Sbjct: 5   KIMVVDDESRMRKLVKDFLKKKDFEVIEAADGEEALDIFFKDKSISLIICDVMMPKINGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+I++     ++P+I +TA   + DE      G + YISKP S  I +  ++  +  
Sbjct: 65  DVVKEIRQ---YSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|190344318|gb|EDK35970.2| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 665

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++ EDN +N KL   ++E  G+      NG+EA E  ++ K DV++MD+Q+  + G
Sbjct: 409 SYKILLAEDNLVNQKLAVRILEKQGHRVEVVENGLEAFEAIQKSKYDVVLMDVQMPVMGG 468

Query: 62  LEITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            E T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M
Sbjct: 469 FEATEKIRQWEKRSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLM 528

Query: 114 ETIKKYI 120
           +TI K I
Sbjct: 529 QTISKCI 535


>gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E        L+   G+  +   +G  AL    +++ D++++D+ L  +SG
Sbjct: 1   MTRILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+++    +  +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKELRS---VSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+      +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRTRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|157825448|ref|YP_001493168.1| response regulator PleD [Rickettsia akari str. Hartford]
 gi|157799406|gb|ABV74660.1| response regulator PleD [Rickettsia akari str. Hartford]
          Length = 450

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 64/118 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D +++D+ + E+ G
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDTVLLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK + E   +PV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  FEVCKTIKTNPETTHVPVVMVTALSDVDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVIQAKNIKQMLLKITQNVKVISNSDE-LDIINEYTPDLVIISSTLENEDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++   E++ + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 211 RISVILRGKEEIRGVVIILQIDEDGMPLVVKGIELGVNDYFVYPIEESELLARIRTQLRR 270


>gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   GYI L+  +G EAL++   +K   +I++D+ + ++ G 
Sbjct: 5   KILVVDDEARMRKLVKDFLSIKGYIVLEAEDGEEALKVFDTNKDIKLILLDVMMPKMDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I++     ++PV+ +TA + + DE    K G + YI+KP S  I +  ++  +  
Sbjct: 65  EVLEAIRQ---YSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLRR 121


>gi|295116020|emb|CBL36867.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 208

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++  ED     ++    ++  G+     R+G EAL+       DV+I+DI +  I GL 
Sbjct: 2   RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++        PV+ +TA     D       G + Y++KP   +     I+  +  
Sbjct: 62  VLRTLRSRGNTA--PVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118


>gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601]
 gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I +D++  + L +  ++  GY   Q  NG EA E+ +   P ++I+D+ + E+ G
Sbjct: 1   MTSILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKMPSLVILDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+++ ++ L   P++ ++A A   D+      G + Y+ KP +       +K  + 
Sbjct: 61  LEVCKKMRNENIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|224538289|ref|ZP_03678828.1| hypothetical protein BACCELL_03180 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520074|gb|EEF89179.1| hypothetical protein BACCELL_03180 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1438

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN        D++  + Y   +  NG E LE A Q+ PD II D+ +  + GL++
Sbjct: 1177 VLVVEDNTELRNFLNDILSGT-YKVFEATNGQEGLEQALQYVPDFIISDVMMPVMDGLDM 1235

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IK   ++  IP+I ++A +   D     + G + YI+KP S +     IK  +
Sbjct: 1236 VKAIKAHRDVCHIPIILLSAKSSLDDRISGLEQGIDDYITKPFSSTYLKTRIKSLL 1291


>gi|222149565|ref|YP_002550522.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736547|gb|ACM37510.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 312

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+   +    D +E SG+  L   +G  AL +  +  PD+I++D  +  + G E 
Sbjct: 11  ILLVDDSPEALGFLTDALEQSGFSVLIATSGQGALGIVERISPDLILLDAVMPGMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +QIK +  + ++PVI +T  +         + G   Y++KPI++      I+ ++  A
Sbjct: 71  CRQIKANPAVAQVPVIFMTGLSETEHVVHALEVGGVDYLTKPINIDELRARIRVHLANA 129


>gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 226

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED   + +     ++ +GY+     +G E L+  R    D+I++D+ L    G  
Sbjct: 2   RILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVMLPVRDGWH 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++  +E  E PV+ +TA     D  R  + G + Y+ KP + + F+  ++  +  +
Sbjct: 62  VLEHLR--TEGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRRS 119


>gi|108758870|ref|YP_628999.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|58803053|gb|AAW82652.1| RodK [Myxococcus xanthus DK 1622]
 gi|108462750|gb|ABF87935.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 981

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++ VED+  N  + R  +    +  ++  +G   LE A +  PD+I+MD+ L  + G 
Sbjct: 860 ARILYVEDSAQNRDIVRRYLNGH-FEVIEAEDGEHGLERAIRDAPDLILMDLSLPRLDGW 918

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T++++       +PVIAVTA A +  +++    GC AY++KP+     +E I+K++G 
Sbjct: 919 EVTRRLRALPAAANVPVIAVTAHAGREYQDKAHAAGCTAYLTKPLDRDQLLEMIRKHLGR 978



 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+ L  +L    +E +G+  +   +G+ AL+ AR+ +P  I++DI L ++ G  
Sbjct: 608 TVLVVDDDPLIQQLVAGQLEPAGFKVVVAEDGIAALKRARELRPQAILLDIHLPKLDGWS 667

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  Q+K +  L  IPVI ++   ++    R    G   Y+ KP+     +E +++ + ++
Sbjct: 668 VLSQLKSEPSLAGIPVILIS---VEEQRARGFSLGACEYLVKPVEPDRLVEVVQRSLHQS 724



 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+    +L    +  +G+   + R+G +AL  AR   P ++++D+ +  + G E+
Sbjct: 734 VLVVDDDSATRELVSRNLRRAGFSTSEARSGEDALLKARVSPPALVVLDLMMPNLDGFEV 793

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            ++++ +    ++PV+ +T   +  +EE + + G   ++ K
Sbjct: 794 LRRLRAEKL--QVPVVVLTGKTLSAEEEALLRDGFAGFVKK 832


>gi|323138820|ref|ZP_08073884.1| response regulator receiver protein [Methylocystis sp. ATCC 49242]
 gi|322395968|gb|EFX98505.1| response regulator receiver protein [Methylocystis sp. ATCC 49242]
          Length = 124

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 77/122 (63%), Positives = 107/122 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E +G+  L+T++G+EA+ LAR+H PD+I+MDIQL E+S
Sbjct: 1   MTKTVLIVEDNELNMKLFNDLLEANGHATLRTKSGVEAIALAREHHPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ +K+D EL++IPVIA+TAFAMKGDEE+IR+GGCEAY+SKPIS++ F+ET+  ++
Sbjct: 61  GLEVTRWLKDDEELRDIPVIAITAFAMKGDEEKIRQGGCEAYLSKPISVAKFLETVNSFL 120

Query: 121 GE 122
            +
Sbjct: 121 AD 122


>gi|317473767|ref|ZP_07933048.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316910024|gb|EFV31697.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1359

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VEDN+   +  R  +    Y      NG  AL + +++ PD+II DI + E+ G E
Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSALYIIKEYFPDLIISDIMMPEMRGDE 1154

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-E 122
            + + +K D     IP+I +TA     +     + G + YI KP ++ I   TI   +   
Sbjct: 1155 LCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLANR 1214

Query: 123  A 123
            A
Sbjct: 1215 A 1215


>gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + LEL R+ +PD++++D+ L  I G E+ 
Sbjct: 5   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 64

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 65  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118


>gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4]
 gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 241

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQMGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED+    KL RD +E  G+      +G+E L+  + +  D++I+DI L ++ G
Sbjct: 1   MKKILIVEDDLTIAKLQRDYLEVKGFEVDIATDGVEGLDKIKNNSYDLVILDIMLPKLHG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + K I+++   ++ PV+ V+A   + D+ +    G + YI+KP S    +  ++ +I
Sbjct: 61  YNVMKSIQDE---KDFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHI 116


>gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + LEL R+ +PD++++D+ L  I G E+ 
Sbjct: 8   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 68  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121


>gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273]
 gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273]
          Length = 247

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+   ++     +E  G+      NG EALE+   +   + I+D+ + ++ G+E+
Sbjct: 21  ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E   L   P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 81  CRRIREKYSL---PIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135


>gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 235

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    +K     +   GY     R+G+EA+  AR+  P V I+D+ +    G E
Sbjct: 16  RVLVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKARESMPHVCILDVMMPGPDGFE 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +K       + VI +TA     D  +   GG + Y+ KP S    +  I   + 
Sbjct: 76  VCRMLKSMG---NVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHARVR 130


>gi|163759327|ref|ZP_02166413.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283731|gb|EDQ34016.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 123

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 92/123 (74%), Positives = 111/123 (90%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+VMIVEDNELNMKLFRDLIE SGY  +QTRNGM+A++LARQH+PD+I+MDIQL E+S
Sbjct: 1   MTKQVMIVEDNELNMKLFRDLIEASGYKTVQTRNGMDAMDLARQHRPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D +L  IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK ++
Sbjct: 61  GLEVTKWLKQDDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPKFIETIKSFL 120

Query: 121 GEA 123
           G+A
Sbjct: 121 GDA 123


>gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 1238

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++V+D+  N+     L++  G      ++G+EA+   ++   D+I+MD+ +  + G 
Sbjct: 1109 KRILLVDDDVRNVYALTALLDEVGLCVSSAKDGLEAIASYQRDPFDLILMDMAMPNMDGY 1168

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T+ +K+      IP+IA+TA AMKGD E+    G + Y++KPI     +  +++++G
Sbjct: 1169 TATRLLKQ-EHGCVIPIIALTAHAMKGDREKCITAGADDYMAKPIKRDELLALLERWLG 1226



 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+     +  +     G+ ++  R G++AL L +Q   + +I+DI L ++SG ++ 
Sbjct: 855 LIIEDDVNFASVIAEEAHAHGFSSVHCRTGLQALGLLQQESFNAVILDILLPDLSGWQLF 914

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMET 115
           ++++     +  PV  ++              G       Y+ KPI      + 
Sbjct: 915 RRLRAQPTHRHTPVHIISCVPQP--------VGWNDDGTRYLVKPIGRDDLEQV 960



 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VED E+  + +R  +   G+  +   +G +A     Q +   +++D+ L +  G  +
Sbjct: 974  VLLVEDVEVEREHYRKQLTELGFQVVACADGEQARAAYAQGQFCALVIDLDLPDQDGFAL 1033

Query: 65   TKQIKEDSELQEIPVIAVTAFA 86
               + +   LQ   V+  T   
Sbjct: 1034 LDSLNQLRPLQGTRVVINTGVD 1055


>gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
 gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
          Length = 243

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++    + PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGI--DAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E        L+   G+      NG++A+    +   D++++D+QL   SG
Sbjct: 1   MSRILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGADLVLLDLQLPGQSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++  S     PVI +TA   + D+    + G + Y++KP S    +  ++  + 
Sbjct: 61  TEVCRQLRARSSA---PVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|160892046|ref|ZP_02073049.1| hypothetical protein BACUNI_04506 [Bacteroides uniformis ATCC 8492]
 gi|156858524|gb|EDO51955.1| hypothetical protein BACUNI_04506 [Bacteroides uniformis ATCC 8492]
          Length = 1355

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN    +   + ++ + Y  LQ  NG E L LA ++ P++I+ DI + E+ G+ + 
Sbjct: 1095 LVVEDNADIREYIANELQDT-YKILQANNGKEGLILALRYTPNIIVSDIMMPEMDGIAMC 1153

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K IKE+     IPVI +TA     D+E     G ++Y++KP S  +    IK  +
Sbjct: 1154 KGIKENMNTSHIPVILLTAKDSIQDKEEGYDSGADSYLTKPFSAKLLRSRIKNLL 1208


>gi|150004703|ref|YP_001299447.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149933127|gb|ABR39825.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1355

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN    +   + ++ + Y  LQ  NG E L LA ++ P++I+ DI + E+ G+ + 
Sbjct: 1095 LVVEDNADIREYIANELQDT-YKILQANNGKEGLILALRYTPNIIVSDIMMPEMDGIAMC 1153

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K IKE+     IPVI +TA     D+E     G ++Y++KP S  +    IK  +
Sbjct: 1154 KGIKENMNTSHIPVILLTAKDSIQDKEEGYDSGADSYLTKPFSAKLLRSRIKNLL 1208


>gi|86607342|ref|YP_476105.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555884|gb|ABD00842.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 128

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 69/121 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+DN   ++    L+  SG       +G+EA+++ RQ KPDV+++DI +  ++G
Sbjct: 1   MSKVLVVDDNRTYLEAISSLLSESGLEVSTAMDGVEAMDIIRQQKPDVVVLDIVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K+D   + I ++  +      D E  ++   +AY++KP      + TIK+ + 
Sbjct: 61  YEVCREVKKDESTKHIRIVVCSTKDQVFDIEWAKRNQADAYVTKPFKPQELLATIKQQLR 120

Query: 122 E 122
           E
Sbjct: 121 E 121


>gi|83643693|ref|YP_432128.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631736|gb|ABC27703.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 1263

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 8/128 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD----VIIMDIQLQEI 59
            ++++VEDN++N ++ + ++E  G  A    NG+EAL   +    D    +++MD Q+ E+
Sbjct: 994  RLLLVEDNQINQEVAQLMLEEMGLPADVAGNGLEALAALQSAPEDAPYNLVLMDCQMPEM 1053

Query: 60   SGLEITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             G E T+QI+        + IP+IA+TA AMKGD E+    G + Y+SKPI+     E +
Sbjct: 1054 DGYEATRQIRAGKAGERNRHIPIIAMTANAMKGDREKCLAAGMDDYLSKPINAGGLEEKL 1113

Query: 117  KKYI-GEA 123
            K ++   +
Sbjct: 1114 KLWLFRRS 1121



 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----------HKPDVIIMDIQ 55
           ++V+DN  N ++    +   G   L+T +G EAL +                D+ I+D+ 
Sbjct: 825 LVVDDNAANREVLCGQLRMWGAHVLETASGEEALAMCEAKINGSPAAFGRPFDIAILDMH 884

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           + ++ G  + +++K     + + ++ +T+   +GD     + G  AY+ KP+S++     
Sbjct: 885 MPQMDGAMLGRELKAKPAYRSMALVMMTSIGHRGDARYFAELGFSAYLPKPVSVAELSAV 944

Query: 116 IKKY------IGEA 123
           +         + +A
Sbjct: 945 LSVVAEGGDALRQA 958


>gi|71905886|ref|YP_283473.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71845507|gb|AAZ45003.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 1066

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 65/118 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++VED  +N ++  +L+  +G +     NG EA+E  R     +++MD+Q+  + GL
Sbjct: 946  RRVLLVEDEPINQEVAAELLSLAGLVVEVAVNGAEAVERVRHGTYALVLMDMQMPVMGGL 1005

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+ I++      +PV+A+TA A   D +     G   +I KP+   +   ++ +++
Sbjct: 1006 EATRLIRQLPGKAVLPVLAMTANAFDEDRQACLDAGMNDHIGKPVDPDLLYASLLRWL 1063


>gi|300868057|ref|ZP_07112695.1| response regulator receiver protein [Oscillatoria sp. PCC 6506]
 gi|300333977|emb|CBN57873.1| response regulator receiver protein [Oscillatoria sp. PCC 6506]
          Length = 141

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 69/119 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE+N  +    +   G+  L   +G E +E+AR   PD+I+MD+ L  + G
Sbjct: 17  MAKILLVEDNEMNRDMLSRRLARKGHEVLIAVDGAEGVEMARSKVPDLILMDMSLPVLDG 76

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+QIK   E   IPVIA+TA AM GD E+    GC+ Y +KP+     +  I+  +
Sbjct: 77  WQATQQIKATPETNTIPVIALTAHAMAGDREKCLAAGCDDYDTKPVEFPRLLGKIEMLL 135


>gi|237727119|ref|ZP_04557600.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1467

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVEDN+    + +  +E   +      +G+E L+    + PD+++ D  +  + G+E
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++D ++  IPVI +TA      + +    G  AYI KP S    +  I++ + E
Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329


>gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
 gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
          Length = 243

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+   ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 77  CRRIREK---YSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131


>gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
 gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
          Length = 240

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++  R+  PDV+++D+ L E+ GLE
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDETRRFSPDVVVLDLGLPELDGLE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 74  VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129


>gi|88797749|ref|ZP_01113337.1| PAS [Reinekea sp. MED297]
 gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297]
          Length = 1593

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62
            +++VED+ +N  +   ++  +G   +   NG +A++    H    D I+MD+Q+  I GL
Sbjct: 1250 ILVVEDSPINQLVVSQILSRNGASVVVKDNGEDAIDYLSNHPEAFDAILMDVQMPGIDGL 1309

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E T++I+    + +IP+IA+TA A+  + ++    G   +++KPI     ++T++ ++G+
Sbjct: 1310 ETTQRIRNHLNMTDIPIIALTAGALVEERKKALDAGMNDFLTKPIEPERLIQTLRHHVGD 1369



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 17/128 (13%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHK----PDVIIMDIQLQE 58
            +MI ED++ + +  + +    G+ +    NG++ L     R  +    PD +++D  + E
Sbjct: 1099 IMIAEDSKDDAQQLQKITRALGWRSSVVNNGVDMLADIRLRAEQNLRLPDAVLVDWNMPE 1158

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMKG-----DEERIRKGGCEAYISKPISLSIF 112
            + G E  ++++E     ++P VI V+A+         DE+ I     +A++ KPI  S  
Sbjct: 1159 LDGFETIRKMREMISKADLPAVIMVSAYEQLDPENPTDEKLI-----DAFLQKPIEPSAL 1213

Query: 113  METIKKYI 120
               +   +
Sbjct: 1214 FNVVNTAV 1221


>gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1467

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVEDN+    + +  +E   +      +G+E L+    + PD+++ D  +  + G+E
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++D ++  IPVI +TA      + +    G  AYI KP S    +  I++ + E
Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329


>gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 226

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|189464923|ref|ZP_03013708.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM
            17393]
 gi|189437197|gb|EDV06182.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM
            17393]
          Length = 1341

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VEDN   +      + +  Y  +   NG EALE   ++  ++++ D+ +  + G E
Sbjct: 1096 TVLVVEDNPEMLAFIERQLSSQ-YAVVTATNGREALEALDRNFVNLVVSDVVMPLMDGFE 1154

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K IK +     IPVI +TA      +    + G ++YI KP S    +  +   I
Sbjct: 1155 LCKTIKSNVGYSHIPVILLTAKTNIQSKIEGMELGADSYIEKPFSPEYLLAVVSNLI 1211


>gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus]
 gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus]
 gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10]
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +   +L    +   G+      +G  AL    +   DV ++D+ L +I 
Sbjct: 1   MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +QI++       PV+ +TA     D+      G + Y++KP +    +  +K  +
Sbjct: 61  GFQLLQQIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|58617050|ref|YP_196249.1| response regulator PleD [Ehrlichia ruminantium str. Gardel]
 gi|58416662|emb|CAI27775.1| Putative regulatory component of sensory transduction system
           [Ehrlichia ruminantium str. Gardel]
          Length = 461

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IV+D   N+KL +  +    Y  L   NGM+A+++A++  PD+I++D+ + E+ 
Sbjct: 1   MTAKVLIVDDLAANIKLLQAKLVNEYYNVLTATNGMDAIQIAQEKHPDIILLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  K++K D     IPV+ VTA     D        G + +++KPI+       I+  
Sbjct: 61  GFETCKRLKSDPTTIHIPVVMVTALDNTSDNRATGLSHGADDFLTKPINDIALFARIRSL 120

Query: 120 IG 121
             
Sbjct: 121 TR 122



 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +++ L  +   ++++ S    + + N  + L L+     D+II+D++     GL +
Sbjct: 159 ILIADEDTLRSEHINNILQQSFQQTVVSHNIEQVLNLSNIENYDLIIIDLEFSG-DGLRL 217

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGD---EERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              ++   E +  P++ +       D     +    G   YI+ P+  +  +  +   + 
Sbjct: 218 CSHLRNKIETRYTPILVL--LDENEDTKLLTKAFDIGIHDYITTPVDSNELIARVNVQVK 275

Query: 122 E 122
            
Sbjct: 276 R 276


>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
 gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
          Length = 993

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 75/122 (61%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+E+N  +   +++  GY A   +NG EAL    +   D+++MD Q+ E+ G E
Sbjct: 731 RILLVEDSEVNQLVLLSMLQKEGYEADVVQNGTEALVALAKVHYDLVLMDCQMPEMDGYE 790

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+    +    E+P++A+TA AM GD ER  + G + Y++KP+ +S F   ++KY 
Sbjct: 791 ATRCIRRGQGNVMNPEVPIVAITANAMTGDRERCLQAGMDDYMAKPVRMSDFTAMLEKYS 850

Query: 121 GE 122
           GE
Sbjct: 851 GE 852



 Score = 40.1 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 27/133 (20%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQEI 59
           V+++E  + + KL +           +  +    ++  ++       PD+++  I L E 
Sbjct: 584 VLLIEPCQASRKLIKIFFSLWNSCFEEASDWESGVKKLQKAAESGVLPDIVL--IALPEE 641

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE----------AYISKPISL 109
              E+ ++ +    L+ + VI +T+             G +          A + KPI  
Sbjct: 642 RRDEVFEKFRTGDLLENVIVIGLTSAGR----------GADFQPDPLGKPDACLEKPIRG 691

Query: 110 SIFMETIKKYIGE 122
                 +   +  
Sbjct: 692 KELYACVADLLKR 704


>gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 226

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + ++++VED      L  D +  + + A    +G+  + L R+   D++I+D+ L   
Sbjct: 1   MSQGRILVVEDEPKLAALIGDYLRAADFQAETLADGLRVIPLLRRQPHDLVILDLMLPGR 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL+I ++++       +PVI VTA   + D     + G + Y+ KP S    +  +K  
Sbjct: 61  DGLDICRELR---GFSRVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARVKAV 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LRRS 121


>gi|311893921|dbj|BAJ26329.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1412

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63
            V++V+D++ N+     ++E  G   LQ  NG  ALE    +   DVI+MD+ + E+ G  
Sbjct: 1293 VLVVDDDDRNLYAITGILELHGMRVLQAENGRAALETLAANPGIDVILMDVMMPEMDGYT 1352

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T  I+   +   +P+IAVTA AM GD E+    G   Y++KP+     +  I+  +
Sbjct: 1353 ATAAIRAMPQHAALPIIAVTAKAMLGDREKSLGSGASDYVTKPVDAGELISRIEAQL 1409


>gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 11  LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 70

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 71  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124


>gi|284050982|ref|ZP_06381192.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
          Length = 592

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ L  +++   GY   +  NG  AL   +  +PD+I++DI +  + G ++
Sbjct: 8   ILVVDDKPENLHLLSEILMLEGYNVRKAVNGKMALMAVKTVQPDLILLDIMMPGMDGYQV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++K +  L ++PVI ++A     D+ +    G   YI+KP  +   +  ++ ++
Sbjct: 68  CKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDYITKPFQMEEVLVRVQNHL 123


>gi|241766028|ref|ZP_04763947.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363977|gb|EER59246.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 247

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED      L  D +  +GY A +  +G E     R  +PD++++DI L    G 
Sbjct: 21  AHILVVEDEPKMAALLIDYLHAAGYRADRLADGREVAAFVRGRQPDLVLLDIMLPGRDGF 80

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK-PISLSIFMETIKKYIG 121
           E+ ++++      ++P+I +TA A + D       G + YI K P S    +  +K  + 
Sbjct: 81  EVCRELR---GFSDVPIIMLTARADEADRLAGLDLGADDYICKTPFSPREIVARVKAILR 137

Query: 122 EA 123
            +
Sbjct: 138 RS 139


>gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1467

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVEDN+    + +  +E   +      +G+E L+    + PD+++ D  +  + G+E
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++D ++  IPVI +TA      + +    G  AYI KP S    +  I++ + E
Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329


>gi|224538238|ref|ZP_03678777.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520170|gb|EEF89275.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1472

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN+      R +     +  ++  NG   LE ++ + PD+II D+ + E  G+E
Sbjct: 1211 TILIVEDNQELRFFIRTIFAQY-FNVIEAENGNIGLEKSKLYMPDIIISDVMMPEKDGIE 1269

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++++     IP++ +TA +    +    K G + YI+KP S +     I   + +
Sbjct: 1270 MVRELRDEMTTSHIPIVMLTAKSTIESKIEGMKLGADDYITKPFSAAYLKARIFNLLEQ 1328


>gi|189464856|ref|ZP_03013641.1| hypothetical protein BACINT_01200 [Bacteroides intestinalis DSM
            17393]
 gi|189437130|gb|EDV06115.1| hypothetical protein BACINT_01200 [Bacteroides intestinalis DSM
            17393]
          Length = 1347

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+++ IVEDN+       +      +      NG + +E A    PD+++ D+ +  ++G
Sbjct: 1091 KRILLIVEDNQDICNYIAESFSDD-FEVKTAANGQQGMEQALSCIPDIVVSDVMMPIMNG 1149

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + K +KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1150 ITMCKMLKEDVRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRINNLL 1208


>gi|325298739|ref|YP_004258656.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
 gi|324318292|gb|ADY36183.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
          Length = 1377

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN   + L   ++    Y     +NG E L   R+H  D+I+ D+ +  + G+   
Sbjct: 1128 LLVEDNGELLGLMARILSKD-YTVYTAKNGEEGLGCTRKHDIDLIVSDVMMPVMDGITFC 1186

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++IK D +   IP + +TA  ++ D     + G +A+I+KP SL++    I   +
Sbjct: 1187 RKIKGDFDTSHIPFLLLTAKNLEEDRVEAYESGADAFITKPFSLTLLQARIANLL 1241


>gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378]
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + E++
Sbjct: 1   MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++++  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 61  GLEVCRLMRKNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|300785437|ref|YP_003765728.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794951|gb|ADJ45326.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ ED+    +L R  +    +  L   +G EA++ A    PD++++D+ +  + GLE+
Sbjct: 5   VLVAEDDVKQAELLRRYLRREAHSVLVVHDGREAVDQAALRHPDLLVLDVMMPGLDGLEV 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + ++ +S   ++PV+ VTA +   D+      G + Y++KP      M  ++  +  A
Sbjct: 65  VRALRRES---DVPVLLVTARSTAEDKLAGFDLGADDYVTKPYDPRELMARVRSLLRRA 120


>gi|226354940|ref|YP_002784680.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226316930|gb|ACO44926.1| putative response regulator, CheY, Guanylate cyclase, GGDEF domain
           with PAS/PAC sensor and Response Regulator Receiver
           modulation [Deinococcus deserti VCD115]
          Length = 448

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 4/124 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++EDN     + +  +E +GY  +   +G   L  A +++PD++I+D+ L + S
Sbjct: 1   MTPNILLIEDNPDITNVVKYDLEQAGYQVMTAEDGSSGLTSAWENQPDLVILDLGLPDFS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++      ++PVI +TA      +  + + G   YI KP      +  ++  +
Sbjct: 61  GEEVARRLRA---TSDVPVIILTAMDAVEQKVSLLRAGANDYIVKPFYPEELLARVEVQL 117

Query: 121 G-EA 123
              A
Sbjct: 118 RARA 121


>gi|224536597|ref|ZP_03677136.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521853|gb|EEF90958.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1364

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVI--IMDIQLQEIS 60
            KK+++VEDNE  +K+  D +    Y  ++  NG EA+E   + K D++  I D+ +  ++
Sbjct: 1115 KKLLLVEDNEELLKVMADSLSRE-YHIIKATNGKEAIEQLEKTK-DIVVVISDVMMPVMN 1172

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G+E+   +K+  E   IP+I +TA + + D     + G + YI+KP  L++ +  IK  +
Sbjct: 1173 GIELCHYMKKQDEWLHIPIILLTAKSSESDIIEGYEAGADDYITKPFQLTLLLVKIKSLL 1232


>gi|218130279|ref|ZP_03459083.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697]
 gi|217987563|gb|EEC53891.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697]
          Length = 1359

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VEDN+   +  R  +    Y      NG  AL + +++ PD+II DI + E+ G E
Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSALYIIKEYFPDLIISDIMMPEMRGDE 1154

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-E 122
            + + +K D     IP+I +TA     +     + G + YI KP ++ I   TI   +   
Sbjct: 1155 LCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLANR 1214

Query: 123  A 123
            A
Sbjct: 1215 A 1215


>gi|254391838|ref|ZP_05007033.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294815467|ref|ZP_06774110.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|197705520|gb|EDY51332.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294328066|gb|EFG09709.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 1804

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1684 KVLIVDDDIRNVFALTSVLEQQGLTVLYAENGREGIEVLEQHDDVQVVLMDIMMPEMDGY 1743

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P++A+TA AMKGD E+  + G   Y++KP+     +  +++++ 
Sbjct: 1744 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWVR 1802


>gi|182413658|ref|YP_001818724.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840872|gb|ACB75124.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 216

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+   +      +   GY       G E L  A     D I++D+ L E+ G  
Sbjct: 2   RLLVVEDDPDLLANLLKALGEEGYAVDGADTGPEGLFKAESWDYDAIVLDVMLPELDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     +  PV+ +TA     D  R    G + Y++KP  L      ++  I  +
Sbjct: 62  LLQRLR---RTKRTPVLMLTARDATQDRVRGLDIGADDYLTKPFDLPELCARLRALIRRS 118


>gi|167588835|ref|ZP_02381223.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 246

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L  D +E +G       NG E   +     PD+I++D+ +    GL 
Sbjct: 6   HVLIVDDDRGIRELIADYLEKNGMRVSLAANGREMRGVLDSGAPDLIVLDLMMPGEDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + + +PV+ +TA   + D     + G + Y++KP ++   +  I+  +  
Sbjct: 66  LCRELR-VGKFRAVPVLMLTARGEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRR 123


>gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 246

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E LE+   ++  ++++DI + +I G+ 
Sbjct: 18  TILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEVHLVVLDIMMPKIDGIH 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  +K  +  
Sbjct: 78  MCMKVREQ---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRR 133


>gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1123

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N ++   L+   G+ A    +G EAL   +Q   D+++MD+Q+  + GL 
Sbjct: 871 RILVAEDNAINQQVAVGLLTKLGHRADVAHDGAEALIQVQQGDYDLVLMDMQMPNMDGLT 930

Query: 64  ITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + I+  D  +  I +IA+TA AM  D       G   YISKPI        + ++ G 
Sbjct: 931 AARAIRALDGSISAITIIAMTANAMDEDRNACLAAGMNDYISKPIDRQRLAALLSRWQGR 990



 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 13/102 (12%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59
           +++V  +E         +   G    Q  + +  L +AR      +  +VI+++  +  +
Sbjct: 732 ILVVAADEELRASLDAPLTDWGAGVGQASDALSGLTVARDAMQDGNPFNVILIEAGMSGM 791

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA 101
           SG ++   ++ DS L  + ++  +              G + 
Sbjct: 792 SGRDLASILRADSALSGLRILMFSRNPQ--------DFGADD 825


>gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905]
 gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905]
          Length = 224

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L    +   G+  ++  +G EAL +      D++++DI +  + G
Sbjct: 1   MTTILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPVDLVVLDIMMPTMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K+++      EIP++ +TA     ++ +  + G + Y++KP         +K  + 
Sbjct: 61  WTLCKELRR--ANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|87302949|ref|ZP_01085753.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87282445|gb|EAQ74404.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 298

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + +V+D+    +L    +   GY      +G + +      +PD++++D+ L    GL 
Sbjct: 63  TIWVVDDDPELRQLLGTYLTDQGYEVRCLTDGRQLMARLEFQRPDLVVLDLMLPGDDGLT 122

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++ S+  ++PV+ +TA     D     + G + Y++KP      M  I+  +  
Sbjct: 123 LLRRLRDSSD--DLPVVMLTARGEAVDRIIGLEQGADDYLAKPFLPRELMARIEAVLRR 179


>gi|293364634|ref|ZP_06611355.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307702891|ref|ZP_07639839.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291316892|gb|EFE57324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623571|gb|EFO02560.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + +    +  +GY  L   +G E LEL R+   D+II DI +  + 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++       + P +  TA   + D+      G + +I KP S    +  +   +
Sbjct: 61  GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|262279093|ref|ZP_06056878.1| AdeR [Acinetobacter calcoaceticus RUH2202]
 gi|262259444|gb|EEY78177.1| AdeR [Acinetobacter calcoaceticus RUH2202]
          Length = 243

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED      +    ++  G   ++  NG +A+E+      D++I+DI++ E++G E+
Sbjct: 15  ILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHATQPIDLVILDIKMPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++ +     PVI +TA   + D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQKAAT---PVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|261207330|ref|ZP_05922017.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289566529|ref|ZP_06446952.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|294616551|ref|ZP_06696329.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|260078390|gb|EEW66094.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289161683|gb|EFD09560.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|291291671|gb|ADD91669.1| DdcR [Enterococcus faecium]
 gi|291590598|gb|EFF22329.1| regulatory protein VanR [Enterococcus faecium E1636]
          Length = 233

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +    L    ++  GY   +   G EAL+   +   D+ ++D+ L +I 
Sbjct: 1   MPDKILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E+      PVI +TA     D+      G + YI+KP +    +  IK  +
Sbjct: 61  GFKIVQKIRENHFF---PVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 233

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L L  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
 gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
            18053]
 gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
            18053]
          Length = 1287

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 73/119 (61%), Gaps = 2/119 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETS--GYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KV+I ED+++NM L + ++         ++  NG EA+E  R ++PD++ MDIQ+ E++G
Sbjct: 1166 KVLIAEDHKINMLLVKSMLAKILVNSELIEAANGREAIEAFRANRPDIVFMDIQMPEMNG 1225

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T++I+       +P+IA+TA  + G+ E+  + G + Y++KP+       +I+K++
Sbjct: 1226 YEATREIRRAEGRSRVPIIALTAGTVVGEREKCIEAGMDDYLTKPVLKDTLEASIRKWL 1284



 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 18/126 (14%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            K++IV+DN    ++ +D++      +    +G EA  L    K  DV+++D Q+    G+
Sbjct: 1019 KILIVDDNAHAGQILKDMLGNKRIASDYIPSGEEAYALLSSGKKYDVVLIDGQMPGWDGI 1078

Query: 63   EITKQIKEDSELQEIPVI---------AVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            E T++I++ S+  + P+I         A+TAF  + +           ++ KP+ +    
Sbjct: 1079 ETTRKIRKLSQGNKQPIILLNDSFDDEALTAFGNELNIRH--------FLVKPVKIQQLF 1130

Query: 114  ETIKKY 119
              +   
Sbjct: 1131 HVLADL 1136


>gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
 gi|212662488|gb|EEB23062.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
          Length = 1444

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVEDN+    + +  +E   +      +G+E L+    + PD+++ D  +  + G+E
Sbjct: 1189 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1247

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++D ++  IPVI +TA      + +    G  AYI KP S    +  I++ + E
Sbjct: 1248 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1306


>gi|153875655|ref|ZP_02003359.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152067881|gb|EDN66641.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 335

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D   N+ L    +  + +  L  ++G  AL+ A   KPD+I++D+ +  ++G
Sbjct: 1   MDTLLVVDDVPANVNLLLKFLTQANFKVLVAKDGESALKKAAYAKPDLILLDVMMPGLTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ K +K  ++ Q IP+I +TA +   D+ +    G   YI+KP+     +  I  ++
Sbjct: 61  FEVCKILKSQTQTQNIPIIFMTALSETVDKVKGFSLGAVDYITKPVQHEEILVRINTHV 119


>gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED     +L +D +E SG+       G + L  A      +II+D+ L  + G
Sbjct: 1   MDKILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLMLPNVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI K+++E+   + IPVI V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICKRVREE---KNIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|86749084|ref|YP_485580.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86572112|gb|ABD06669.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 240

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+     L    +  +    +  ++G E        + D++++D+ L    GL 
Sbjct: 7   HILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRVDLVVLDVMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  S L   P+I +TA     D     + G + Y++KP +    +  I+  +  
Sbjct: 67  LCRRVRASSPL---PIIMLTARGEDVDRILGLEMGADDYLAKPFNPRELLARIRSVLRR 122


>gi|327396459|dbj|BAK13880.1| transcriptional regulator BaeR [Pantoea ananatis AJ13355]
          Length = 230

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+V+I+ED+     +    ++  GY  +   NGM  LE   + +PD+I++D+ L  ++G
Sbjct: 3   TKRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEQVGRWQPDLILLDVMLPVMNG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   I+      + PVI VTA     D     + G + Y+ KP      +  ++  + 
Sbjct: 63  TEVLAAIRRSG---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119

Query: 122 EA 123
            A
Sbjct: 120 RA 121


>gi|238650401|ref|YP_002916253.1| response regulator PleD [Rickettsia peacockii str. Rustic]
 gi|238624499|gb|ACR47205.1| response regulator PleD [Rickettsia peacockii str. Rustic]
          Length = 450

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 65/118 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D+I++D+ + E+ G
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D E   IPV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  CEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 67.8 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270


>gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 240

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 15  MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74
            ++ R  +   G+  L+  +G   L L R H PD+I++D+ L  + GL++ ++++     
Sbjct: 16  REVLRRYLTRDGHDVLEAADGPTGLRLVRSHHPDLIVLDLMLPGMDGLQVCREVR---RT 72

Query: 75  QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +PVI +TA   + D     + G + Y+ KP S       + + +  +
Sbjct: 73  STVPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQRS 121


>gi|256829655|ref|YP_003158383.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578831|gb|ACU89967.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 979

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 72/120 (60%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61
           +V++V+DN  N ++   ++E  G +     NG+EAL+   +     DV++MD+ +  + G
Sbjct: 852 RVLLVDDNLFNQEVACAILEDVGAVTAVAFNGLEALQRLEEAKDPYDVVLMDMAMPVMDG 911

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE +++I+   + +++P+IA+TA AMKGD E     G   +++KPI ++ F   +++ + 
Sbjct: 912 LEASRRIRSMEKYRDLPIIAMTANAMKGDREACLAAGMSDHLAKPIDITEFYAVLRRCVR 971



 Score = 83.6 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQE 58
           M + V++V+DN   ++     +   G+      +G +AL    +   +  ++I+D  + E
Sbjct: 703 MGRAVLVVDDNPAALQSLVLCVTRLGFACEAVGSGQQALTAMLRDPGRFSLVILDWDMPE 762

Query: 59  ISGLEITKQIKEDSELQEIPVI--AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G     +++      ++PV+  A++        E IR  G    + KP++    ++ I
Sbjct: 763 LDGPTTLSRLRATGLPDDVPVLLAALSCHEDPQGRE-IRDIGAAGQLIKPVTTFGLLDAI 821


>gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D    ++  +  +   GY      NG +AL LA  + PDV+++D+ L +I G
Sbjct: 1   MKRILVVDDEPQLLRAMQINLRAEGYAVSVAANGTDALHLAASNPPDVLVLDLGLPDIEG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + I+      ++P++ ++A     D+      G + Y++KP  L   +  ++    
Sbjct: 61  ADVIRGIRA---WSDLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAVER 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|160932361|ref|ZP_02079752.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
 gi|156868963|gb|EDO62335.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
          Length = 233

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D      L    ++   Y   +    MEALE       D+ I+DI L +IS
Sbjct: 1   MSEKILIVDDEVEIADLIEVYLKNENYTVFKFYTAMEALECIDTTTLDLAILDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+E       PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GFTLCQKIRERYTY---PVIMLTAKDTETDKITGLTLGADDYITKPFRPLEMVARVKSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1253

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+DN         L+    +      NG +AL       PD+++ D+ +  + G  
Sbjct: 647 RILIVDDNHDMRDYLVRLLNPY-FTIDTALNGQDALLKIGAQMPDLVLSDVMMPVMDGKA 705

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++I+ +     +PVI ++A A +       + G + Y+ KP S +  +  ++  I
Sbjct: 706 MLERIRSNENTLRLPVIFLSARAGEEARIDGLEMGADDYLVKPFSAAELLTKVRAQI 762


>gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 239

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D+     L +  ++  GY       G E L+  R  +P ++I+D+ L ++SG
Sbjct: 1   MSRILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRAFQPALVILDLNLPDVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +Q+++++    + V+ +T+     D+    + G + Y++KP SL      ++  + 
Sbjct: 61  YDLCQQMQKETG---VYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 11  RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 70  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 127


>gi|88706906|ref|ZP_01104605.1| two-component response regulator [Congregibacter litoralis KT71]
 gi|88698828|gb|EAQ95948.1| two-component response regulator [Congregibacter litoralis KT71]
          Length = 128

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 68/115 (59%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VEDNELN  +    ++ +G+ AL   +G +AL+      PD++++D+ L  I G  + 
Sbjct: 7   LLVEDNELNRDMLSRRLKRAGFDALIAEDGAKALDCIESEHPDLVLLDMNLPLIDGWTVC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           K+++ +S L   P+IA+TA AM  D ++    GC+ Y +KPI     +E IK+ +
Sbjct: 67  KRVRANSALAGTPIIALTAHAMPEDRDKAIAAGCDDYATKPIDFPALLEKIKRLL 121


>gi|315127117|ref|YP_004069120.1| signal transduction histidine kinase two-component system with
           Protein-glutamate methylesterase domain
           [Pseudoalteromonas sp. SM9913]
 gi|315015631|gb|ADT68969.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas sp. SM9913]
          Length = 918

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VEDN +N ++   ++E +        +G++ALE+ +    D+I+MD Q+  + G 
Sbjct: 798 KRILLVEDNAINRQVIAKMLEPTKASLTMAEDGLKALEVLKSQSFDLILMDCQMPNMDGY 857

Query: 63  EITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+ I+  E      +P++A+TA A + D++R    G + +I+KPI+       I   +
Sbjct: 858 ECTRAIRTTEIKTGLRVPIVAITANAYEEDKQRCLIVGMDDFIAKPINSDDLYTVIGNIL 917


>gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 268

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 25  KRILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 84

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 85  EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 142


>gi|282165251|ref|YP_003357636.1| putative response regulator [Methanocella paludicola SANAE]
 gi|282157565|dbj|BAI62653.1| putative response regulator [Methanocella paludicola SANAE]
          Length = 128

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 70/122 (57%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+M+V+D    +++ + ++E+ GY  +   +G EAL+   +  PD++++DI +  + G
Sbjct: 1   MTKIMVVDDEPDLLEVVKLILESDGYQVVTANSGQEALDKIEKEMPDLVLLDIIMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK-GGCEAYISKPISLSIFMETIKKYI 120
            E+  +IK +++  +IPVI +TA   + D+         + YI+KP   +  +E IK+ +
Sbjct: 61  WEVFSRIKGNTKTHDIPVIMLTAKDQRIDKLIGLHVVRVDDYITKPFGRAELLERIKRVL 120

Query: 121 GE 122
            E
Sbjct: 121 EE 122


>gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
          Length = 230

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D+     L +  ++     A     G + L+  ++ +  ++++D+ +  + G
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEYQLVVLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++I++++ L   P++  T+      + R  + G + Y++KP  +   +  I   I 
Sbjct: 61  FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 250

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56
           ++++VED ++   +    +E  GY      +G  ALEL +       +   D++++D+ L
Sbjct: 20  RILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             ++GL+I + I+       IP++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 80  PSVNGLDICRLIRYQGNT--IPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  +  
Sbjct: 138 RALLRR 143


>gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 226

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      + PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALR---TAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
 gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++       +  +G EAL        D+ I+DI L +IS
Sbjct: 1   MSEKILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I + ++E  +    P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLSICQIMRE--KGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|150003331|ref|YP_001298075.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931755|gb|ABR38453.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1345

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2    LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
            +K   +++VEDNE       + +E   +      NG EAL++ R +  D++I DI +  +
Sbjct: 1078 MKGYTLLLVEDNESMRSFIFERLEAL-FTVETAVNGQEALDILRSNHIDLVISDIMMPVM 1136

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +G E+ K+IK D +L  IPVI +TA      +    K G EAY+ KP S +     I   
Sbjct: 1137 NGYELCKEIKADIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKTQILSL 1196

Query: 120  I 120
            +
Sbjct: 1197 L 1197


>gi|94500213|ref|ZP_01306747.1| two component system response regulatory protein [Oceanobacter sp.
           RED65]
 gi|94427786|gb|EAT12762.1| two component system response regulatory protein [Oceanobacter sp.
           RED65]
          Length = 227

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D++    L  + +   G+  +   +G +AL+   Q  PD++++D+ + E++G
Sbjct: 1   MSRLLLVDDDQALNSLLTEYLSQEGFEVINAYDGKQALDSLTQE-PDLMVLDVMMPELNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ KQ+++     ++P++ +TA     D     + G + Y++KP +    +  I   + 
Sbjct: 60  IEVLKQLRQKDI--QLPILMLTAKGDDLDRILGLELGADDYLAKPCNPRELLARINAILR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 237

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 65/116 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED+     L +  +E  G+       G  A+EL RQ +PD+I++DI L +  G
Sbjct: 6   MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           L+I K I++D +L  IPVI +TA A + D     + G   Y+ KP  +   +  IK
Sbjct: 66  LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIK 121


>gi|332306725|ref|YP_004434576.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174054|gb|AEE23308.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 331

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV+IV+D   N+++ + ++    Y     ++G EAL L  +  PD+I++D+ +  ++G 
Sbjct: 9   QKVLIVDDEPANLRVLKKILGDL-YRLTFAKSGEEALRLVERELPDLILLDVMMPGMTGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++ + +K++   + IPV+ VTA +   DE +    G   YI+KP+S ++    ++ ++
Sbjct: 68  DVCQALKQNPLSKGIPVMFVTALSDDVDEAKGFDVGAVDYITKPVSPAVVKARVRTHL 125


>gi|329939932|ref|ZP_08289214.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
 gi|329300758|gb|EGG44654.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
          Length = 646

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 526 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDGY 585

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T  I+   +   +P++A+TA AMKGD E+  + G   Y++KP+     +  + +++ E
Sbjct: 586 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMNQWMRE 645


>gi|302383483|ref|YP_003819306.1| response regulator receiver protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194111|gb|ADL01683.1| response regulator receiver protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 127

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/121 (69%), Positives = 105/121 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL+++ GY   QTR G++A+ LARQ+ PD+I+MDIQL EIS
Sbjct: 1   MSKKVLIVEDNELNMKLFHDLLDSQGYQTFQTREGLQAMALARQYMPDLILMDIQLPEIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D EL  IP+IAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ET++K++
Sbjct: 61  GLEVTKWLKDDEELAHIPIIAVTAFAMKGDEERIRQGGCEAYISKPISVMPFLETVRKHL 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|241762806|ref|ZP_04760870.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax delafieldii 2AN]
 gi|241368225|gb|EER62417.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax delafieldii 2AN]
          Length = 367

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++V+D E N+KL   L++  GYI +   +G +AL  A  + PD+I++DI + ++ G
Sbjct: 6   SATILVVDDEERNVKLLETLLQADGYITMSASSGRDALAQASANPPDLILLDIMMPDLDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T  +K D   Q +P+I +T+   +  + R  + G E ++SKPI  +     ++  + 
Sbjct: 66  FDTTVLLKADPRTQAVPIIVITSLDDRQSKLRALEAGAEEFLSKPIDRADLKVRVRNLLR 125


>gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 209

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 14  NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73
             +L    ++  GY   +  NG EAL+    +  D +++DI + E+ G  + K+I++   
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGHSVCKEIRK--- 57

Query: 74  LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 58  TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106


>gi|239617405|ref|YP_002940727.1| response regulator receiver protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506236|gb|ACR79723.1| response regulator receiver protein [Kosmotoga olearia TBF 19.5.1]
          Length = 134

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/120 (41%), Positives = 79/120 (65%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++++DNE N+ L   L+E+ GY  +   +G++ ++ A + KPD+I++DIQL E+ 
Sbjct: 1   MKKKVLVIDDNEQNLYLITFLLESKGYEVITAIDGIKGIKKAIEKKPDLILLDIQLPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+IK   E+  IP++AVT++AM  DEE+    GC  YI KP     F+  I+KY+
Sbjct: 61  GYEVAKRIKSIDEISHIPIVAVTSYAMPADEEKALAIGCVGYIKKPFFPENFIPEIEKYL 120


>gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
 gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
          Length = 853

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 59/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D+     + R  +E  GY  ++  +G  ALE   Q +PD+++MD+ +  + G  +
Sbjct: 8   ILVADDDPAMRFMLRRALEKDGYAVIEAEDGAAALEAYEQAEPDIVLMDVLMPVLDGFAL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             Q++     +  PV+ +T        E+  + G   YI+KPI  ++  + +++ +
Sbjct: 68  CAQLQTLPRHRRAPVLMITGLDDDASVEKAYQSGATDYITKPIQWAVLRQRVRRLL 123


>gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 235

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 62/129 (48%), Gaps = 10/129 (7%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--------QHKPDVIIMD 53
           + ++++VED E   +     +++ GY  +   +G  AL++ +            D+II+D
Sbjct: 1   MGQILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILD 60

Query: 54  IQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
           I L  I+G+++ + I+ +     +PV+ ++A   + D     + G + Y++KP  +   +
Sbjct: 61  IMLPGINGIDLCRFIRREGST--VPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELI 118

Query: 114 ETIKKYIGE 122
              +  +  
Sbjct: 119 ARCRALLRR 127


>gi|146421491|ref|XP_001486691.1| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 665

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++ EDN +N KL   ++E  G+      NG+EA E  ++ K DV++MD+Q+  + G
Sbjct: 409 SYKILLAEDNLVNQKLAVRILEKQGHRVEVVENGLEAFEAIQKSKYDVVLMDVQMPVMGG 468

Query: 62  LEITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            E T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M
Sbjct: 469 FEATEKIRQWEKRSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLM 528

Query: 114 ETIKKYI 120
           +TI K I
Sbjct: 529 QTISKCI 535


>gi|124007931|ref|ZP_01692632.1| two-component system response regulator [Microscilla marina ATCC
           23134]
 gi|123986693|gb|EAY26483.1| two-component system response regulator [Microscilla marina ATCC
           23134]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 5/124 (4%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   K+++VED+    +L ++ ++  GY     R+G   L+       D+ I+D+ L +
Sbjct: 1   MKDEIKILLVEDDNNLGQLLQEYLQIKGYPTTLRRDGEAGLDTFHTAGFDLCILDVMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G  + ++I+E +  +++P+I +TA +MK D  +  K G + YI KP S+   +  I+ 
Sbjct: 61  MDGFTLAEKIREQN--KKVPIIFLTAKSMKEDAIKGFKAGADDYIHKPFSMEELLLRIEA 118

Query: 119 YIGE 122
            +  
Sbjct: 119 IMRR 122


>gi|312879224|ref|ZP_07739024.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310782515|gb|EFQ22913.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 241

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+D+    +L R  +E  G+  L   +G   L  A   + D+ I+D+ L E SG 
Sbjct: 6   KRILVVDDDGELGELLRTYLEREGFACLHVTDGETGLREALSGRQDLAILDVMLPEKSGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+  S   ++PV+ +TA     D     + G + YI KP         ++  +  
Sbjct: 66  DVLREIRARS---DLPVLMLTARGDPVDRVVGLELGADDYIPKPFLPRELAARVRAVLRR 122


>gi|326317892|ref|YP_004235564.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374728|gb|ADX46997.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 375

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
             V++V+D   N+ L   L+    Y+     +G +AL +A+    PD+I++DI +  + G
Sbjct: 18  ATVLVVDDTPDNLALMATLLRDH-YLVKVANHGEKALRIAQSDAPPDLILLDIMMPGLDG 76

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +Q+K     ++IPVI +TA +   DE R    G   YI+KPIS  I +  +  ++
Sbjct: 77  YEVCRQLKAHPAARDIPVIFLTARSTPEDERRGLSVGAVDYITKPISPPILLARVHTHL 135


>gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
 gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+      +G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 11  LLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 70

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA     D     + G + Y+ KP+   +    I+  +  
Sbjct: 71  RRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124


>gi|238756867|ref|ZP_04618055.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           aldovae ATCC 35236]
 gi|238704697|gb|EEP97226.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           aldovae ATCC 35236]
          Length = 309

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+ +N+++      ++ +      +G +AL++    +PD+I++DI++ +++G E
Sbjct: 9   KILIVDDHPINIQVLYQAF-SADHNVCMATSGKQALDVCHSQQPDLILLDIEMPDMNGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  ++K  +E  +IPVI VTA   +  E R    G   +ISKPI+ +     +K ++
Sbjct: 68  VCAKLKACTETSDIPVIFVTAHIDEETETRCFSAGAVDFISKPINRNTVRARVKTHL 124


>gi|224536547|ref|ZP_03677086.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521803|gb|EEF90908.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1356

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VEDN    +  +  + T  Y      NG EALE+  + + D++I D+ +  + G+
Sbjct: 1109 RTLLVVEDNNEIRQYLKSKLATI-YNVFDCDNGHEALEIIHRREIDLVISDVMMPVMDGI 1167

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ K IK + E+  IPVI +TA       +     G   Y+ KP +  + +  I+  +
Sbjct: 1168 ELCKAIKSNIEINHIPVILLTAHVSDTHVKDGLSSGANDYVFKPFNFDLLLARIQNLL 1225


>gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 233

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   V++V+D +         ++   Y   +  +G  ALE  +Q + D+ I+D+ L +I
Sbjct: 1   MKQSNVLVVDDEKEIADFIELYLKNENYEVFKYYSGAGALECVKQEQIDLAILDVMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G EI K+I++D      PVI +TA     D+      G + YI KP      M  +K  
Sbjct: 61  DGFEILKEIRKDHNF---PVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|110346937|ref|YP_665755.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110283048|gb|ABG61108.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 242

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D++    L   L+   GY      +G +      +   D++++D+ L    GL 
Sbjct: 9   HILVVDDHQDIRDLVAGLLAKEGYRVSAAADGRQMRRQLIESSVDLVVLDLMLPGEDGLT 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++  +    IPV+ +TA   + D     + G + Y++KP      +  I+  +  
Sbjct: 69  LCRDLRAST---NIPVVMLTAKGDEFDRVLGLEMGADDYLTKPFGGRELVARIRAVLRR 124


>gi|307824938|ref|ZP_07655160.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307733985|gb|EFO04840.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 1572

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 67/119 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+D  +N+ +  + +E  GY  L  ++G E L+ A   KPD+I++D+ +  + G
Sbjct: 10  MPTILIVDDTPVNLGVVVESLENRGYRLLIAQDGTEGLKRAAFVKPDLILLDVLMPGLDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++K D++  +IPVI +TA      +    K G   Y+SKP+ +   +  +  ++
Sbjct: 70  FEVCRRLKGDADTADIPVIFMTALGDSDHKITGFKVGGVDYLSKPMQIDEVIARVGAHL 128


>gi|291566666|dbj|BAI88938.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 592

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ L  +++   GY   +  NG  AL   +   PD+I++DI +  + G ++
Sbjct: 8   ILVVDDKPENLHLLSEILMMEGYNVRKAVNGKMALMAVKTVPPDLILLDIMMPGMDGYQV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++K +  L ++PVI ++A     D+ +    G   YI+KP  +   +  ++ ++
Sbjct: 68  CKELKNNQNLAKVPVIFLSALNDVFDKVKAFGSGGVDYITKPFQMEEVLVRVENHL 123


>gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++ ++D E  + + +  +E  GY      NG  A+   +  KPD++I+D+ L  +SG E
Sbjct: 2   KILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTFKSLKPDLVILDLMLPGLSGEE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I  +I+  S+   +P++ +TA   + D+      G + Y++KP S       +K  +  
Sbjct: 62  ICSKIRAISK---VPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAILRR 117


>gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
 gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
          Length = 242

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|298481664|ref|ZP_06999855.1| sensor histidine kinase/response regulator [Bacteroides sp. D22]
 gi|298272205|gb|EFI13775.1| sensor histidine kinase/response regulator [Bacteroides sp. D22]
          Length = 1348

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVED+E              +  +++RNG EALE   +  PD++I DI + E+ G  
Sbjct: 1093 HVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGFT 1151

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++  L  IPVI +TA   + D       G +AYI KP ++ I  +T++  I
Sbjct: 1152 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1208


>gi|291533552|emb|CBL06665.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 223

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED +        +++ SGY      +G  A+E A ++  D +I DI + ++SG+E
Sbjct: 2   KILLAEDEKDMSSALTAILQHSGYDVDSVYDGQAAMEKALENVYDCLIFDIMMPKMSGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K I++   L   PVI +TA +   D       G + Y+ KP S+   +  I+     
Sbjct: 62  ALKIIRQKGNLS--PVIMLTAKSEIDDRITGLDAGADDYLMKPFSVGELLARIRSLTRR 118


>gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
 gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
          Length = 228

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED +   +     ++  GY      NG   LE A     D I++D+ L EI+G
Sbjct: 1   MSKILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+ +   +  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVCRRIRRE---KITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117

Query: 122 E 122
           +
Sbjct: 118 Q 118


>gi|225869229|ref|YP_002745177.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702505|emb|CAX00433.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D    + +    ++ +GY      +G +ALEL  + + D+II D+ +  + 
Sbjct: 1   MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIITDVMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++    E  + P + +TA   + D+      G + +ISKP S    +  +K  +
Sbjct: 61  GYDFIGEV--LLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNIL 118

Query: 121 GE 122
             
Sbjct: 119 NR 120


>gi|108761373|ref|YP_630825.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
 gi|108465253|gb|ABF90438.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
          Length = 970

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++M+VED+         L+    Y  ++  NG +  + A + +PD+I+ D+ +  +SG
Sbjct: 597 SPRIMVVEDDPEIRSFLARLLAQH-YRVMEAINGDDGRQRALRERPDLILSDVMMPVMSG 655

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++   ++ D +  +IPVI +TA      +      G   Y+ KP S +  +  I+  + 
Sbjct: 656 LQMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPFSPNELLARIETQLR 715


>gi|113477574|ref|YP_723635.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
 gi|110168622|gb|ABG53162.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
          Length = 440

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 57/116 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ +  + +  + +      +G  A+  A+   P +I++D+ +  I G E 
Sbjct: 7   ILVVDDTPANLAVLSEALSDADFEVAIATDGELAITQAKLSLPSLILLDVMMPGIDGFET 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ K  +  + IP+I +TA +   D+ +    G   Y++KP   +  +  +K  +
Sbjct: 67  CRRFKACNITKNIPIIFMTALSDCIDKVKGLSLGAVDYVTKPFQEAELIARVKTQL 122


>gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681]
 gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681]
          Length = 1039

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 66/118 (55%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           KV+ V+D+E+N+++  +L+ T+G   +   +  EAL +   + + D++I D  + E+SG+
Sbjct: 706 KVLAVDDDEVNLRVLEELLYTTGCSVVAVDHAEEALHMLNGRTRFDLVITDWMMPEMSGI 765

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++I+E   L E+PV+ +TA  + GD       G   ++ KP+        ++  +
Sbjct: 766 ELCRRIRERYSLSELPVLLLTARDLPGDIRAGFMAGANDFLRKPVDAEELKARVRTLL 823


>gi|298682184|gb|ADI95252.1| winged helix family two compontent transcriptional regulator
           [Pseudomonas putida]
          Length = 246

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L  + ++ +G       +G +       +  D+I++DI +    GL 
Sbjct: 6   HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + +  PV+ +TA   + D     + G + Y++KP S    +  I   +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123


>gi|262275440|ref|ZP_06053250.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886]
 gi|262220685|gb|EEY72000.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886]
          Length = 1306

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++ ED+ +N +L   ++   G       NG  A E    ++ D+I MD Q+  + G E 
Sbjct: 1037 VLVAEDHPVNQELITTILTKLGCKTTVANNGALAFERFMSNRYDMIFMDCQMPVMDGFEA 1096

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T +I++   ++ L  +P++A+TA  M GD+E+    G   YI+KP   +  +  + K +
Sbjct: 1097 THKIRQLESENSLPAVPIVAMTANVMSGDKEKCLDVGMTEYIAKPFKQAELIAVMNKLL 1155


>gi|153808543|ref|ZP_01961211.1| hypothetical protein BACCAC_02838 [Bacteroides caccae ATCC 43185]
 gi|149128865|gb|EDM20082.1| hypothetical protein BACCAC_02838 [Bacteroides caccae ATCC 43185]
          Length = 1315

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 64/116 (55%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN       +  +       +   +G+EAL+L + H PD+I+ D+ +  ++G E+
Sbjct: 1060 ILVVDDNSDLTDFLKKSLGEYFKRIVIAADGVEALQLIKSHTPDIIVSDVMMPRMNGYEL 1119

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K IKED  +  IP+I +TA   K  +    K G +AY++KP  + + ME I+  +
Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMELIRNRL 1175


>gi|27377396|ref|NP_768925.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27350540|dbj|BAC47550.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 127

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 71/119 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE+N  +    +   GY  +   +G   + +A   +PD+I+MD+ L  I G
Sbjct: 1   MPKILLVEDNEMNRDMLSRRLVRGGYEVIIAEDGARGVAIATSDRPDLILMDMSLPVIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+QIK   EL++IP+IA+TA AM  D ++  K GC+ Y +KPI L   +  I+  +
Sbjct: 61  WEATRQIKATPELRKIPIIALTAHAMATDRDKALKAGCDDYDTKPIELQRLLGKIETLL 119


>gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 226

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IVED+    +L R  +   GY      +G E +    +   D +++D+ L  I GL
Sbjct: 5   RRVLIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLEEGGWDALVLDLMLPGIDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI K  +  +  +  P+I  +A + +       + G + Y++KP S+   +  ++  +  
Sbjct: 65  EICK--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRR 122


>gi|326202207|ref|ZP_08192077.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988002|gb|EGD48828.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + +++I+ED+    +  R L+E+  Y  ++  NGM  LE       D++I+DI +  +
Sbjct: 1   MSRGRILIIEDDYDIREGIRILLESENYEVIEAENGMTGLEKLDTLM-DLVILDIMMPGM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGL   ++I++   +  +PV+ +TA A + D+      G + Y++KP + +  +  +K  
Sbjct: 60  SGLRTCEEIRK---VSFLPVLFLTAKAQESDKLIGLMAGGDDYLTKPFTYAELLGRVKAL 116

Query: 120 IGE 122
           +  
Sbjct: 117 VRR 119


>gi|206889649|ref|YP_002248032.1| response regulator receiver [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741587|gb|ACI20644.1| response regulator receiver [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 125

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/120 (45%), Positives = 80/120 (66%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I EDNE N KL  D+ +  GY      NG E +E+A++ KPD+I+MD+Q+  + 
Sbjct: 1   MPYKILICEDNEKNRKLMEDIFKYHGYEVYLAANGKEGIEMAKRIKPDLILMDMQMPVLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K+I++DSE++ I +IAVT++AM GD+ER+ + G + YI+KPI      E IKK I
Sbjct: 61  GFEAIKKIRQDSEIKHIKIIAVTSYAMSGDKERVLQAGADYYIAKPIDTRALPEIIKKII 120


>gi|170757144|ref|YP_001781246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122356|gb|ACA46192.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +         +   G    + ++G++AL L       +IIMDI + ++ G++
Sbjct: 5   KVLIVDDEDEIRDAIEIYLRNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+E+   + IP+I ++A +   D+      G + Y++KP ++   +  +K  +  
Sbjct: 65  ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 240

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+++ED+ +   +    +   GY   Q   G E L + ++  PDV+++D+ L ++ G
Sbjct: 1   MYKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +   I+E S    +P++ ++  +   +  +  K G + Y+ KP S+      ++  I 
Sbjct: 61  MGVCASIRERS---HVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 242

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE- 58
           M KK +MIVED+    ++    +   GY  +   +  EAL+   +   D  I+DI L   
Sbjct: 1   MAKKSIMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGS 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G ++ + +K   + +  PV+ ++A     D+    + G + Y++KP ++   +  IK 
Sbjct: 61  MDGFDLIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKS 120

Query: 119 YIGE 122
               
Sbjct: 121 IFRR 124


>gi|85860640|ref|YP_462842.1| response regulator receiver domain-containing protein [Syntrophus
           aciditrophicus SB]
 gi|85723731|gb|ABC78674.1| response regulator receiver domain [Syntrophus aciditrophicus SB]
          Length = 135

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 72/119 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVEDNE+N  +    +E  G+  +   +G+E + +AR   PD+I+MD+ L  + G
Sbjct: 8   MAKLLIVEDNEMNRDMLTRRLERKGFTTVVAVDGVEGIAMARSEAPDLILMDMSLPVLDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+++K   E + IP+IA+TA AM+ D ER  + GC+ Y SKPI     +E I   +
Sbjct: 68  WEATRRLKAAQETRTIPIIALTAHAMESDRERALRAGCDEYDSKPIEFPRLLEKIAALL 126


>gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 864

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N    R  +E  G+      +G EALE   ++   +++MD Q+  + G E 
Sbjct: 607 VLLVEDNRVNQLAVRMQLEKMGFEVHLAAHGREALEKLEKNTYALVLMDCQMPVMDGYEA 666

Query: 65  TKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T+ I+         +P+IA+TA AM+ D E+    G + +++KP+   +    ++++
Sbjct: 667 TRAIRAKECGTDNHLPIIALTANAMEQDREKCLAAGMDGHLTKPVRPELLQPVLEQF 723



 Score = 35.1 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58
           +V+++E N     +  + +         T    +AL+        Q    V+I+  QL  
Sbjct: 456 RVLVIEKNAQYQNVLGEYLRAWKMECTITATRQQALQSLITTGKSQRPFHVVILSAQLAG 515

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-SKPISLSIFMETI 116
             G  I++ +   +  ++  ++ +T F              +  I S PIS       +
Sbjct: 516 -DGAWISQML---ALHRQCRLVLLTPFGGSNGLPMGLDPNMDTCILSHPISSIKLWRAL 570


>gi|283850943|ref|ZP_06368228.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573589|gb|EFC21564.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 814

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 67/116 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N ++ RD ++  G      R+G EA+E+ +    D ++MD+Q+  + GL  
Sbjct: 310 ILLVEDNAINRQVARDTLQRFGASVDVARHGGEAVEMVKVAFYDAVLMDVQMPVMDGLTA 369

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+ I+      ++P++A+TA A+  D +R  + G   Y++KPI     +  + ++I
Sbjct: 370 TRLIRALPGGPDLPIVALTAHALAEDRDRCLEAGMNDYLTKPIDTGRLLNALGQWI 425



 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 12/130 (9%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58
           ++++V+D +LN  +F  ++ ++G+      NG EA      E A     D+I+MDI++ E
Sbjct: 581 RILLVDDAKLNRAIFSQILRSAGHDVATAANGKEACRALFGEKATGRPYDLILMDIEMPE 640

Query: 59  ISGLEITKQIKED-------SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           + G   T+ I+              IP++A+T+    G+  R  + G +  + K      
Sbjct: 641 MDGPAATRVIRGLLSASASPPCPPGIPIVALTSHDADGERARCLEAGMDECLPKLFEHDA 700

Query: 112 FMETIKKYIG 121
            ++++ + + 
Sbjct: 701 LLDSLAQVMR 710


>gi|257900011|ref|ZP_05679664.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837923|gb|EEV62997.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 222

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED+     L+R ++E +G+  +   NG +AL+     + ++II DI + ++ G
Sbjct: 1   MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  S   + PV+ +TA A   D++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 61  YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|257885040|ref|ZP_05664693.1| response regulator [Enterococcus faecium 1,231,501]
 gi|257820892|gb|EEV48026.1| response regulator [Enterococcus faecium 1,231,501]
          Length = 233

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +    L    ++  GY   +   G EAL+   +   D+ ++D+ L +I 
Sbjct: 1   MPDKILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDCIERESFDLAVLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E+      PVI +TA     D+      G + YI+KP +    +  IK  +
Sbjct: 61  GFKIVQKIRENHFF---PVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|291326977|ref|ZP_06574149.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
           1131]
 gi|291312096|gb|EFE52549.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
           1131]
          Length = 249

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KV++V+D+     L    +   G+      N  +   +  +    +I++D+ L    G
Sbjct: 14  SYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDG 73

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++  +    IP+I VTA   + D     + G + YI KP +    +  I+  + 
Sbjct: 74  LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 131

Query: 122 E 122
            
Sbjct: 132 R 132


>gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 250

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56
           ++++VED ++   +    +E  GY      +G  ALEL +       +   D++++D+ L
Sbjct: 20  RILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +++GL+I + ++       IP++ ++A   + D     + G + Y++KP S+   +   
Sbjct: 80  PQVNGLDICRLLRYQGNT--IPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  +  
Sbjct: 138 RALLRR 143


>gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 261

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 7/126 (5%)

Query: 1   ML----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M+      V++V+D +         ++  G   L+ ++G+EAL +  + +  +IIMDI +
Sbjct: 1   MMIMEEYSVLVVDDEDEIRDAIGIYLKNEGIKVLKAKDGIEALMVLEEEEVHLIIMDIMM 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             + G++ T +I+E    ++IP+I ++A +   D+      G + Y++KP +    +  +
Sbjct: 61  PRMDGIKATFKIRES---KKIPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELIARV 117

Query: 117 KKYIGE 122
           K  +  
Sbjct: 118 KSQLRR 123


>gi|53713422|ref|YP_099414.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60681669|ref|YP_211813.1| putative two component system histidine kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|253565409|ref|ZP_04842864.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265763688|ref|ZP_06092256.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|52216287|dbj|BAD48880.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60493103|emb|CAH07884.1| putative two component system histidine kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|251945688|gb|EES86095.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263256296|gb|EEZ27642.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301163212|emb|CBW22762.1| putative two component system histidine kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 375

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +  +   NG +AL+  ++  PD+I++D+ + ++SG E
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFNIVTASNGNQALDQVKKENPDLILLDVMMPDMSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++++K D E   IP+I +TA     D  +  + G   +ISKP +    +  +   I
Sbjct: 71  VSQKLKADPEAAHIPIIFLTALNSTADIVKGFQVGGNDFISKPFNKEELIIRVSHQI 127


>gi|118578946|ref|YP_900196.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118501656|gb|ABK98138.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 236

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +M+VED     +     +E  G        G +ALE  +    D+II+D+ L  + G +
Sbjct: 9   HIMLVEDEIHLARGICFNLEEDGCRISHFATGEKALEALQFEHFDLIILDVMLPGMDGFQ 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++       +P++ +TA + + D     + G + Y++KP +L  F+  +K  +  +
Sbjct: 69  VCQSVRRMDG--RVPILMLTARSEESDRVHGLETGADDYLTKPFNLVEFLLRVKGMLRRS 126


>gi|311696852|gb|ADP99725.1| two-component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 241

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++V+D+     L    ++  G   L    G       RQH  D++++DI +    G
Sbjct: 4   SPTILVVDDHRDIRDLVGRYLQEHGLRVLLADGGDAMKRQLRQHSVDLVVLDIMMPGDDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++E +EL   PVI +TA + + D     + G + Y++KP +    +  IK  + 
Sbjct: 64  LTLCRYLREHTEL---PVILLTAMSEETDRIVGLEMGADDYLTKPFNPRELLARIKAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|39997317|ref|NP_953268.1| response regulator [Geobacter sulfurreducens PCA]
 gi|39984208|gb|AAR35595.1| response regulator [Geobacter sulfurreducens PCA]
 gi|298506254|gb|ADI84977.1| chemotaxis protein CheY [Geobacter sulfurreducens KN400]
          Length = 123

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED E  +KL   L+ + GY      +G  AL+      PD+II+DI L  + G 
Sbjct: 4   KRILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPPDLIILDIMLPGMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ + IK D   + IPV+ +TA     D ++  + G  AY++KP   +  +E I+  +
Sbjct: 64  EVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKSARIIEIIQGLL 121


>gi|254884267|ref|ZP_05256977.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1467

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVEDN+    + +  +E   +      +G+E L+    + PD+++ D  +  + G+E
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++D ++  IPVI +TA      + +    G  AYI KP S    +  I++ + E
Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329


>gi|307152868|ref|YP_003888252.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
 gi|306983096|gb|ADN14977.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
          Length = 125

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 69/119 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IV+D+    ++  +L++  G   L+  +GMEA E  ++  PD++I D+ + +++G
Sbjct: 1   MITVLIVDDSPSLRQILIELLQKRGINVLEAASGMEAQEQIQKEVPDLVITDLIMPQMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ + IK +   Q++PV+  +  + + D     K G +AYI+KP   +  ++TIK  +
Sbjct: 61  YELCRWIKNNPSTQDVPVLICSTKSEEFDRYWGMKQGADAYITKPFQPAEMLQTIKFLL 119


>gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 233

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D +         ++   Y   +  NG +AL        D+ I+D+ L +I G E
Sbjct: 5   TVLVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVMLPDIDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I KQI+        PVI +TA     D+      G + YI KP      M  +K  +  
Sbjct: 65  ILKQIR---LTHNFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRR 120


>gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
          Length = 232

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED +   +  R  +    Y     ++G E L  A ++  D+ I+D+ L EISG+ 
Sbjct: 2   RILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGLPEISGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++E+   ++ P++ +TA +   D+    + G + Y+ KP  +      I   +  +
Sbjct: 62  LIKELREND--KQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRS 119


>gi|71281676|ref|YP_267431.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71147416|gb|AAZ27889.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 246

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 63/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+        + +   G+       G   +++ +++  D++++D+ L  ++G
Sbjct: 1   MYNILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKKNTTDIVLLDVMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +E+ + I++  + +++P+I +TA A + DE    + G + Y+ KP+     +  I + +
Sbjct: 61  IEVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRALLARINRQL 119


>gi|21228982|ref|NP_634904.1| response regulator [Methanosarcina mazei Go1]
 gi|20907523|gb|AAM32576.1| Response regulator [Methanosarcina mazei Go1]
          Length = 137

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/120 (43%), Positives = 81/120 (67%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++VED+ + M+L R L+ T GY + + R+G EAL++ ++++ D+I++DIQL  + G
Sbjct: 13  MKNILVVEDSAIIMELIRFLLTTFGYESKEARDGFEALKIVKENRFDLILLDIQLPGLDG 72

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K+IK   E+   PVIA+TA AM+GDE+R  K GC  YISKPI +      +   IG
Sbjct: 73  LEVLKEIKNLPEICRTPVIALTAHAMQGDEDRFLKAGCNGYISKPIEIERLKSMLDSCIG 132


>gi|57239049|ref|YP_180185.1| response regulator PleD [Ehrlichia ruminantium str. Welgevonden]
 gi|58578992|ref|YP_197204.1| response regulator PleD [Ehrlichia ruminantium str. Welgevonden]
 gi|57161128|emb|CAH58041.1| putative response regulator component of a two-component regulatory
           system [Ehrlichia ruminantium str. Welgevonden]
 gi|58417618|emb|CAI26822.1| Putative regulatory component of sensory transduction system
           [Ehrlichia ruminantium str. Welgevonden]
          Length = 461

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IV+D   N+KL +  +    Y  L   NGM+A+++A++  PD+I++D+ + E+ 
Sbjct: 1   MTAKVLIVDDLAANIKLLQAKLVNEYYNVLTATNGMDAIQIAQEKHPDIILLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E  K++K D     IPV+ VTA     D        G + +++KPI+       I+  
Sbjct: 61  GFETCKRLKSDPTTIHIPVVMVTALDNTSDNRATGLSHGADDFLTKPINDIALFARIRSL 120

Query: 120 IG 121
             
Sbjct: 121 TR 122



 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +++ L  +   ++++ S    + + N  + L L+     D+II+D++     GL +
Sbjct: 159 ILIADEDTLRSEHINNILQQSFQQTVVSHNIEQVLNLSNIENYDLIIIDLEFSG-DGLRL 217

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGD---EERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              ++   E +  P++ +       D     +    G   YI+ P+  +  +  +   + 
Sbjct: 218 CSHLRNKIETRYTPILVL--LDENEDTKLLTKAFDIGIHDYITTPVDSNELIARVNVQVK 275

Query: 122 E 122
            
Sbjct: 276 R 276


>gi|325275465|ref|ZP_08141393.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099396|gb|EGB97314.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 240

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D++   +L  D +  +GY  L+  +G +      +H  D++++D+ L    
Sbjct: 1   MSTTLLVVDDDDEIRELLCDYLADAGYNVLEAADGEQMRAQMARHTVDLVVLDLMLPGED 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +Q++    L    VI ++A     D     + G + Y++KP      +  IK  +
Sbjct: 61  GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 222

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED +   +     ++   Y       G + LE A   + D+I++D+ L  I+G
Sbjct: 1   MKKILLIEDEKNLARFIELELKHESYEVTVEYEGRKGLESALSEEWDIILLDLMLPGING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I++    ++ P+I +TA     D+      G + YI KP ++   +  ++  + 
Sbjct: 61  IEVCRRIRK---TKQTPIIMLTARDGVMDKVMGLDSGADDYIPKPFAIEELLARMRSLLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|300725194|ref|YP_003714522.1| response regulator in two-component regulatory system with EnvZ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631739|emb|CBJ92458.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 239

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    +II+D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQMDRLLTRESIQLIILDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  +    IP+I ++A   + D     + G + Y+SKP +    +  ++  +  
Sbjct: 66  VCRRLRSQNNA--IPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRAVLRR 122


>gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268]
 gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268]
          Length = 237

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K+++ +D++  ++     +   GY  ++  +G + L++  +   D+II+D+ +  + G
Sbjct: 1   MQKILVCDDDKQIVEAISIYLTGEGYQVIKAFDGYDVLKILEKENVDLIILDVMMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E S    IP+I ++A     D+      G + YI+KP +    +  +K  + 
Sbjct: 61  IRTTLKIREKS---SIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|166031682|ref|ZP_02234511.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC
           27755]
 gi|166028659|gb|EDR47416.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC
           27755]
          Length = 946

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 75/122 (61%), Gaps = 5/122 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEI 59
           K++++VEDNELN ++ + ++E +G+   +  NG  A++  +       DV++MDIQ+  +
Sbjct: 824 KRILVVEDNELNREIVKAVLEETGFEVEEAENGAVAVDKIKTAGALYYDVVLMDIQMPVM 883

Query: 60  SGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G   TK+I+  EDS+L  IP+IA++A A + D +     G   +++KP+++S  ++ + 
Sbjct: 884 DGYMATKKIRNLEDSDLANIPIIALSANAFEEDRKASADAGMNGHLAKPVNVSELLKMLC 943

Query: 118 KY 119
           K 
Sbjct: 944 KL 945


>gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 224

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +    +    ++ + +      +G EALE       DVII+D+ + +++G E
Sbjct: 2   KILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVMMPKMNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++ +    E  V+ +TA     ++ +    G + Y+ KP      +  I+  +  
Sbjct: 62  VVKNLRANKN--ETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR 118


>gi|332798879|ref|YP_004460378.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696614|gb|AEE91071.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 224

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D    + + +   E   Y  L   +G+EA++   + +PD+I++DI + ++ 
Sbjct: 1   MRTKILIVDDEADIVAMLKGFFENRNYDVLTATDGIEAIKQ-SERQPDIILLDINMPQLD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++I+   +    P++ +TA     D+ +    G + YI KP S+      +  ++
Sbjct: 60  GLSVCRRIR---DYVSCPILFLTARIEDADKVKGFSVGGDDYILKPFSIIELEARVAAHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1051

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 78/121 (64%), Gaps = 1/121 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++ EDN++N  L R+L+   G+ A     G+EAL+  RQ + D+++MDI++ +++GL+
Sbjct: 929  RVLVAEDNQINQVLIRELLGMQGHTASIVGTGLEALQALRQAEYDLVLMDIRMPDMNGLQ 988

Query: 64   ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+     + +IPVIA+TA+A++GD +R    G + Y++KPI +  F   ++   G 
Sbjct: 989  AVQRIRAGEAGKTDIPVIALTAYALEGDRKRFLAAGMDGYLAKPIRIEEFNTVLRDVAGR 1048

Query: 123  A 123
            A
Sbjct: 1049 A 1049


>gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 234

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59
           +KKV++ ED +   +     +  SGY  +    G +AL+   +++   DV ++DI +  I
Sbjct: 1   MKKVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGAFDVALLDIMMPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+++ K+I+E +      +I ++A + + D+      G + YI+KP S+S  +  +   
Sbjct: 61  DGMQVCKKIREKNSGMG--IIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAV 118

Query: 120 IGE 122
              
Sbjct: 119 CRR 121


>gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 231

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           K++++V+D    +++ + +   +G+   L   +G  AL++  + +PD++I+D+ +  + G
Sbjct: 4   KRILVVDDETDLLEMVKSIFTRAGFTQVLTASSGEAALKMCEEQEPDMMILDVMMPGMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K++++     +IPV+ +TA     D+    + G + Y+ KP      +  ++  + 
Sbjct: 64  FAALKELRK---TSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILK 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 247

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    +  SG+       G +AL  A +  PD++++D+ L +  G 
Sbjct: 15  ARVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGF 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E  +L  +PV+ +TA     D       G + Y++KP SL   +  ++  +  
Sbjct: 75  SVARRLREGGDL--VPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRR 132


>gi|42782234|ref|NP_979481.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
 gi|42738159|gb|AAS42089.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
          Length = 226

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQLQEI 59
           +KKV+I+ED ++  +         GY  +   +G   LEL  A  H+  +II+DI L  +
Sbjct: 1   MKKVLIIEDEKIIRETVAHYFSHDGYDVITAEDGQIGLELFAAHDHEVSLIILDIMLPVM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  I ++I++ S    +P+I +TA + + D     + G + Y++KP   +I +   K+ 
Sbjct: 61  DGWSICRRIRKSS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRL 117


>gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++V++VED  +  +   D +   GY  ++  +G  A+    +  PD++++D+ L    G
Sbjct: 4   TRRVLVVEDEPVINQAVSDRLTAEGYDVVRAWDGPGAVSCFEETSPDLVVLDVMLPGYDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+    ++ +PV+ +TA   + D       G + Y++KP      +  +   + 
Sbjct: 64  LEVCRRIQA---VRPVPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 241

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++I++D+     L    +E  GY       G   L    + +  ++I+D+ L E+S
Sbjct: 7   MRERILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVMLPEMS 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  +  ++++    + IPV+ +TA   + D+ +  K G + Y++KP S++ FM  ++  I
Sbjct: 67  GFAVLSELRK---TKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLI 123

Query: 121 GE 122
             
Sbjct: 124 RR 125


>gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 249

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEI 59
           M  +++I +D+   +++  D +   G+  ++  NG + LE     KP D+ I+DI + E+
Sbjct: 23  MQNRILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEM 82

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE  + I+E +   + PV+ ++A   + D+    + G + Y+SKP S+   M  +  +
Sbjct: 83  DGLETLRHIRERT---DAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAH 139

Query: 120 IGE 122
           +  
Sbjct: 140 LRR 142


>gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1055

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED  L     + ++   G+      NG EAL L  +    +++MD+Q+  + GLE T
Sbjct: 923  LLVEDEALARLAIQGMLRREGHDVRTVENGREALTLLAREPFALVLMDVQMPAMDGLEAT 982

Query: 66   KQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++I+           P++A+TA+AM+GD+ER    G + Y++KP+ L   +  I + +
Sbjct: 983  RRIRSGEAGLAAARTPIVAMTAYAMQGDKERFLAAGMDGYVTKPVELGELLAVIDQVL 1040


>gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
 gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
          Length = 1522

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 70/121 (57%), Gaps = 2/121 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
            +++IVEDN  N ++ R+L+E  G +     +G EA+E+   +    D+++MD+Q+  + G
Sbjct: 1173 RLLIVEDNLNNQQIARELLEDEGAVVSMANHGKEAIEILEHNPSLFDLVLMDLQMPVMDG 1232

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T+ I++   L+ +P+IA+TA AM  D +     G   +I KP  L+  +  I+KY G
Sbjct: 1233 FNATQYIRKSIGLKNLPIIAMTANAMVSDRDACLAAGMNDHIGKPFDLNNLIHIIRKYTG 1292

Query: 122  E 122
            +
Sbjct: 1293 Q 1293



 Score = 98.7 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 8/121 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
            +V++V+DN    +L + + E+  +I     NG +AL+  +Q          + +D ++  
Sbjct: 1025 RVLVVDDNPTACELIKQMGESLKWIVDVATNGSDALQRIKQQYDNGVAYGALFIDWKMPG 1084

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115
            + G + +K ++E   +  +P ++ VTA   +   +R  +     + Y+ KPI+ S+ +++
Sbjct: 1085 LDGWQTSKYVREMMPVGNLPMIVMVTAHDREMLLQRSEEEQALLDGYLVKPITASMLLDS 1144

Query: 116  I 116
            +
Sbjct: 1145 V 1145


>gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1029

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ EDN++N ++    +   G       +G EALE  RQ +  +++ D+ +  + G 
Sbjct: 766 RRILVAEDNDINRRVIARQLALLGLQCDTAEDGFEALERWRQGQYSLLLTDLHMPGMDGY 825

Query: 63  EITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+T +I+ E++  +  P++AVTA A++G++ER    G + +I KP+ ++   E + +++
Sbjct: 826 ELTARIRSEEAPGRRTPIVAVTANALRGEKERCIDAGMDDFILKPVQVAALQEVLARWL 884


>gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family
           [Halothiobacillus neapolitanus c2]
          Length = 292

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N+++  D ++  GY  L + +G  AL+  +   PDVII+D ++  I G E
Sbjct: 10  TILLVDDAPDNLRVLHDALQQQGYRVLVSTDGQSALDSVQLMPPDVIILDARMPGIDGFE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             K++K D   ++IPVI +T  +      +  + G   Y++KP+ +   +  I  ++  A
Sbjct: 70  TCKRLKNDLTTRDIPVIFMTGLSDTEYIVQGFQAGGVDYVTKPVVIEELLVRITTHMQRA 129


>gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 652

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED ++N    +  +E  G+      NG + L+       D+++MD+Q+  I+G+E
Sbjct: 523 RILVAEDEKINRLYTKQYLEQQGFTVETVANGQQVLDKLFYEDFDLVLMDVQMPIINGIE 582

Query: 64  ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK-- 118
            TK I++         IP+IA+TA+AM+GD E+  + G   YI+KP+      +TI +  
Sbjct: 583 ATKAIRKGEAGAHNKRIPIIAITAYAMQGDREQFIEQGMNDYIAKPVIKEELYKTITRTI 642

Query: 119 YIGEA 123
           ++ ++
Sbjct: 643 HLNQS 647


>gi|223936999|ref|ZP_03628907.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894280|gb|EEF60733.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 217

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED     +    ++    Y  L   NG   LELA + KPD+I+ D+ + E+ G
Sbjct: 1   MKKILVIEDEPEMRRNLVTILRLEQYQPLGAENGRLGLELAAKEKPDLILCDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K ++E++  + IP I ++A   K D+      G + Y++KP++ +  +E I     
Sbjct: 61  YGVLKALRENAATESIPFIFLSAKGEKIDQRNGMNLGADDYLTKPVARAELLEAIVARFR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|172036052|ref|YP_001802553.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC
           51142]
 gi|171697506|gb|ACB50487.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC
           51142]
          Length = 594

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   ++  +GY      +G  AL  A+   PD+I++DI++ ++ G E+
Sbjct: 13  ILIVDDKPSNLRILSTMLVKAGYKVRAVTSGNMALTAAKTMPPDIILLDIKMPDMDGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+++  E  EIPVI ++A     D+ +  + G   YI KP      +  +  ++
Sbjct: 73  CEQLQQFPETTEIPVIFLSALQDVEDKVKAFEVGGVDYIIKPFQFQEVLARVSLHL 128


>gi|160885643|ref|ZP_02066646.1| hypothetical protein BACOVA_03646 [Bacteroides ovatus ATCC 8483]
 gi|156109265|gb|EDO11010.1| hypothetical protein BACOVA_03646 [Bacteroides ovatus ATCC 8483]
          Length = 1368

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVEDNE   +  R L  +  Y   +  NG E + +A++  PD+II D+ +    G 
Sbjct: 1114 KSLLIVEDNEDVREYIRSLFISK-YTVYEAGNGEEGVRMAKEKLPDLIISDVMMPVKDGF 1172

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               ++I+   E   IP + +TA A   D  +  + G + Y+ KP +  I    +   I
Sbjct: 1173 TCCREIRTQQETAHIPFLMLTAKAEDVDVLQGSRSGADDYMMKPFNPEILKAKVDNLI 1230


>gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 232

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED++    +  + +   G+      NG EAL++    K +VI++D+ L +I 
Sbjct: 1   MGYKILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLMLPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  + I+  S    +PV+ ++A     D+      G + YISKP S+   +  IK  I
Sbjct: 61  GMECLRMIRSKSM---VPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|154490294|ref|ZP_02030555.1| hypothetical protein PARMER_00526 [Parabacteroides merdae ATCC 43184]
 gi|154088905|gb|EDN87949.1| hypothetical protein PARMER_00526 [Parabacteroides merdae ATCC 43184]
          Length = 1361

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+++ED++      + L++   Y      NG E L+L ++ KPD+I+ D+ +  + G E+
Sbjct: 1113 VLVIEDDQDLRDSLQRLLQ-EKYTISMAANGEEGLKLVQEIKPDLILSDVMMPIMDGFEL 1171

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             KQ+K   E   IP+I +TA     D       G +AYI+KP + ++    I   I
Sbjct: 1172 CKQLKRKKETSCIPIILLTAKINDKDYLEGLNCGADAYITKPFNFNVLQANIDMVI 1227


>gi|146308781|ref|YP_001189246.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145576982|gb|ABP86514.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 802

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 59/117 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVEDN +N  + R ++   GY      NG EAL+L R    D +++D Q+  + G  
Sbjct: 672 TVLIVEDNAINQLVTRGMLLKLGYRVRTADNGAEALDLLRSETVDAVLLDCQMPVMDGFA 731

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++      E+PV+A+TA +  GD ER    G   Y++KP+        +  ++
Sbjct: 732 TCRALRALPGCAEVPVLAITAHSHSGDRERCLAAGMSDYLAKPMKFEELRVLLHDWV 788


>gi|71279016|ref|YP_268481.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea
           34H]
 gi|71144756|gb|AAZ25229.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea
           34H]
          Length = 242

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K +++++D+    +L  + +E+  +      +G   L  A     D+I++D+ +  ++G
Sbjct: 8   TKHILLIDDDAELSELLTEYLESENFKVTSCLDGASGLAKAFDDSFDLILLDVMMPILNG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K +       + P++ +TA     D     + G + Y++KP      +  IK  + 
Sbjct: 68  FEVLKAL---GGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 239

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M ++  +++V+D     +     +  +G+      N  EA      +  D++I+DI +  
Sbjct: 1   MSERPHLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNANAIDLVILDIMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL + + I+E     EIPVI +TA + + D     + G + Y+ KP S    +  IK 
Sbjct: 61  EDGLSLCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKV 117

Query: 119 YIGE 122
               
Sbjct: 118 IFRR 121


>gi|288959997|ref|YP_003450337.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912305|dbj|BAI73793.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1522

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++ +DN         L+  +GY  +   +G  A+   R  +PD+++ D+ +  + G  
Sbjct: 742 TVLLADDNADMRGYVERLLAGAGYRVVAVEDGRSAVTAVRAIRPDLVLSDVMMPHLDGFG 801

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +   ++ + + +E+P+I ++A A +       + G + Y++KP S    +  ++  +  A
Sbjct: 802 VIDALRRNPDTRELPIILLSARAGEESAIDGFQAGADDYVAKPFSARELIARVEGTLRLA 861



 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61
             V++VED+E        ++    Y  LQ R+   AL +     P D++  D+ +   +  
Sbjct: 1266 TVLVVEDDEEVRHTVVAMLTDLDYRVLQARDAQSALAILESGVPIDLLFTDVVMPGPLRS 1325

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++ +  K       + V+  + +         R       +SKP S  I    I++ +
Sbjct: 1326 PDLAR--KAQERFPNLAVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREILARKIRQVL 1382



 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
             +++VED+ L      D++   G+  L+  +  EAL +A  +H  D++  D+ L +  G 
Sbjct: 1405 TILLVEDDALIRMAVADMVAELGHRVLEAGSVREALHIAGSEHAIDLLFTDLTLPDGRGE 1464

Query: 63   EITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++  ++ +    L   PV+  +      + +    GG   ++ KP  L+     I   +
Sbjct: 1465 DLAAELVRRMPGL---PVVFASGRMGPDELDAASFGGKTVHLRKPYDLAGLERAILAAL 1520


>gi|255525277|ref|ZP_05392218.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187784|ref|ZP_06856178.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255511042|gb|EET87341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047741|gb|EFG87181.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I +DNE   ++ R L+E+ GY  ++  NG +A+    ++  D+II+DI +   SG
Sbjct: 1   MKNILIADDNEEIREIVRVLLESEGYNVMEAVNGEDAVIKVDKN-IDLIILDIMMPIKSG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   +I+E +     P++ +TA     D+      GC+ Y+SKP S +  +  +K  + 
Sbjct: 60  FKACVEIREKTSA---PILFLTAKTQDSDKCMGFSSGCDDYLSKPFSYTELVSRVKALLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
 gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
          Length = 262

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  + +      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 28  IVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 87

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 88  TRRIRQEGI--NAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 143


>gi|168703281|ref|ZP_02735558.1| putative response regulator [Gemmata obscuriglobus UQM 2246]
          Length = 143

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I +DN  N  L    ++ SG+      NG +AL  AR+  PD+I++D+ + ++SG
Sbjct: 1   MPRILIADDNPSNADLLDAHLDGSGFETKLVHNGADALAAAREWNPDLILLDVMMPKMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ ++++ D     + V+ VTA     D E     G + +I+KPI+ +  +  ++  +
Sbjct: 61  FEVCRRLRADPATAGVAVLMVTALDQPNDVETAVDAGTDDFITKPINKTELLLRVRAML 119


>gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1467

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVEDN+    + +  +E   +      +G+E L+    + PD+++ D  +  + G+E
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++D ++  IPVI +TA      + +    G  AYI KP S    +  I++ + E
Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329


>gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314]
 gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    ++L    ++  G+  +   +G E L++AR+ +PD  I+D+ +  + G E
Sbjct: 14  KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++ +    + PV+ +TA     +       G + Y++KP SL   +  ++  +  
Sbjct: 74  LLTKLRAEGL--DGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 130


>gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 246

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IVED+    +L +D +E +G+      +G+   +  ++   D++I+DI L  + GL
Sbjct: 16  KKILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESYDLLIIDIMLPGLDGL 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           EI +++ E+   ++IPV+ V+A   + D+ +    G + YI+KP S    +  +K ++
Sbjct: 76  EILRRMNEE---KDIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHL 130


>gi|300864270|ref|ZP_07109150.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506]
 gi|300337735|emb|CBN54296.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506]
          Length = 1945

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV+IV+D+  N+     ++E      +   NG + + + +     D+++MD+ + E+ G
Sbjct: 1825 KKVLIVDDDVRNIFALTSMLERHQMQVMYAENGRDGITVLQNSPEIDIVLMDVMMPEMDG 1884

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  + I+   +   +P+IA+TA AMKGD E+    G   YI+KP+     +  ++ ++
Sbjct: 1885 YETMQAIRNIPQFSSLPMIALTAKAMKGDREKCIDAGASDYITKPVDTEQLISLLRVWL 1943



 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED+    ++  D+    G+  L        L +AR+ KP  I++D+ L  + G  + 
Sbjct: 1560 LIIEDDVNFARILLDMAREHGFKGLVALRSDIGLVMAREFKPTAIMLDLNLPVMDGWTVL 1619

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             ++K D   + IPV  V+   ++   +R  + G  AY+ KP+S     + +
Sbjct: 1620 DRLKHDPNTRHIPVHIVS---VEEGRQRGLQLGAIAYLQKPVSSEALSKAL 1667



 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K +++VED+E       DLI            G EAL +      D I+MD+ L ++SG 
Sbjct: 1679 KSLLVVEDDETQRFSIIDLIGNHDVYTTAVGTGAEALTILNSGHFDCIVMDLGLPDMSGF 1738

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+ + IK+D+ L+ +P+I  T   +   EE   K   E  I K + S    ++
Sbjct: 1739 ELIELIKQDANLKSLPIIIYTGKELSRAEEIQLKRMAETIIIKDVRSPERLLD 1791


>gi|284050274|ref|ZP_06380484.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
 gi|291568236|dbj|BAI90508.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 579

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 65/115 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED  L  +   +L+    +  L+  +G+  ++LA Q  PD+I+ D+ +  + G
Sbjct: 1   MKKILIIEDERLVRENLVELLTFENFQVLEATDGLRGVKLAEQEHPDLILCDVMMPILDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             +  Q++++ +   IP I +TA A + +  +  + G + YI+KP S +  M +I
Sbjct: 61  YGVLAQLRQNPKTAIIPFIFMTALADRMNTRKAMELGADDYITKPCSAAELMRSI 115


>gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
 gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 1452

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 3/120 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED+ L+    + ++E SGY      +G EAL+   ++  D+I+MD+Q+  + G+E
Sbjct: 1330 RILLAEDDSLSSLTCKRMLEKSGYSVTAANDGQEALQRLTENDFDLILMDVQMPIMDGVE 1389

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             TK I++ S L     IP++A+TA+AM GD+E     G   YI+K +      E I++ +
Sbjct: 1390 ATKAIRKASNLGAKSSIPIVAMTAYAMTGDKESFLAAGMNDYIAKSVDKRALFEAIERVL 1449


>gi|237713754|ref|ZP_04544235.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|229446201|gb|EEO51992.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
          Length = 926

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 681 VLVIDDNADIRSYVRRLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 739

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 740 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 795


>gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 239

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+    ++   ++   G+      +G  AL   R   PD++++D+ L    G+ 
Sbjct: 15  HVLVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRAVNPDLVLLDVMLPGKDGMS 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+ +S    +P+I +TA     D     + G + Y+ KP      +   +  +  
Sbjct: 75  VCREIRAESG---VPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRR 130


>gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED           +   G+     R+G+ A++ A + +PD +++D+ L  I GL
Sbjct: 16  ATILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVMLPGIDGL 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+T++I+ D      P++ +TA   + D       G + Y++KP S+   +  +K  +  
Sbjct: 76  EVTRRIQADHPT---PILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRR 132


>gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G  ALE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|254415898|ref|ZP_05029655.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177325|gb|EDX72332.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 364

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED E   +   +L+    +  L   NG   ++LA+Q +PD+II DI + E+ G
Sbjct: 1   MNTILIIEDEEGIRENIYELLSAEDFEVLLAENGKTGIQLAQQQRPDLIICDIMMPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             +  Q++++   + IP I +TA + K D  +  + G + Y+SKP +    +  I  
Sbjct: 61  YGVLTQLRQNLSTEAIPFIFLTAKSAKADLRQGMESGADDYLSKPFTREALLRAIAA 117


>gi|148652854|ref|YP_001279947.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571938|gb|ABQ93997.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 231

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+EDN   +       E  GY      NG   L LA ++  DVI++D+ L  + G
Sbjct: 1   MHKILIIEDNPDIVANVYAFFEPKGYQLDNAHNGPSGLTLAAENTYDVILLDVMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K ++E    +  PV+ +TA     D+      G + Y+ KP SL      ++  I 
Sbjct: 61  TQLCKALREKLHNK-TPVLMLTARDTLSDKVAGFDSGADDYLVKPFSLVELEVRVRALIR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+      +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRSRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 227

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I+ED E   +     +E  GY      NG E LE   +   D++++DI L  +SG+EI
Sbjct: 6   VLIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAIIEGDFDLVLLDIMLPGLSGMEI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++++SE   IP+I +TA     D+      G   YI+KP ++   +  ++  +  
Sbjct: 66  CRRVRKESE---IPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRR 120


>gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+      +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRAKS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|265765508|ref|ZP_06093783.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
 gi|263254892|gb|EEZ26326.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
          Length = 1361

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVEDN    +  R L  T  Y  L+  +G E + +A    PD+II D+ +    G 
Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1171

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               ++I+E  E   IP++ +TA A   D  +    G + Y+ KP +  +    ++  I
Sbjct: 1172 VCCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229


>gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 226

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED E    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 1   MLMRVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMIPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQRLRADNNT--TPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|160895063|ref|ZP_02075837.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
 gi|156863494|gb|EDO56925.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
          Length = 239

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D +  + +        GY       G  AL+   + KPD+I++D+ + +I 
Sbjct: 16  MAQSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEK-KPDIILLDVNMPDID 74

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+   +    P+I +TA     D+ +    G + Y+ KP S+      I  ++
Sbjct: 75  GFTVCERIR---DYVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHL 131

Query: 121 GE 122
             
Sbjct: 132 RR 133


>gi|144898960|emb|CAM75824.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 388

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62
            +++V+D   N+ +   L++   Y      +G +AL+  A  + PD+I++DI +  + G 
Sbjct: 11  TILVVDDTPDNLAVLSSLLKDE-YRVKVASSGEKALKVAAAANPPDLILLDIMMPGLDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K D   ++IPVI +TA +    E    + G   YISKPIS  I +  ++ ++
Sbjct: 70  EVCQRLKLDPATRDIPVIFLTAKSDVDSERHGLELGAVDYISKPISPPIVLARVRTHL 127


>gi|91203276|emb|CAJ72915.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 123

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/118 (50%), Positives = 82/118 (69%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K VM+VEDNE N KL R +++  GY  ++   G EAL L ++  PD+I+MDIQL  I GL
Sbjct: 4   KNVMVVEDNEKNRKLIRVVLKAKGYNVIEATTGEEALSLLKEQIPDIILMDIQLPGIDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +QIK D+  ++IP+IAVTA AMKGD+++I   GC+AY+SKPI       TI+KY+
Sbjct: 64  TLIRQIKADAGKKDIPIIAVTAHAMKGDQQKILDTGCDAYMSKPIDTRELPLTIEKYL 121


>gi|16329450|ref|NP_440178.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1651932|dbj|BAA16858.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 840

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 58/114 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V  ++D+ LN+K+ +  +E  G+      +G+ A+    Q +PD+I++DI +  I G E
Sbjct: 8   TVFAIDDSPLNLKILQRFLEKQGWKVFIAEDGLTAITEINQVQPDIIVLDIMMPGIDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + +++K      EIP+I ++A   +    +  + G   YI KP      +  ++
Sbjct: 68  VCRRLKAAPATAEIPIIFLSALTDQKSIVKGLELGAVDYIHKPFQQEEIITRLQ 121


>gi|186681435|ref|YP_001864631.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186463887|gb|ACC79688.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 364

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++ V+D   N+ +   ++E  GY      +   AL +  +  PD+I++D+ + EI G E
Sbjct: 11  KILAVDDVFDNLLVLEAVLEDEGYEISLVEDSKIALAMVEESPPDIILLDVMMPEIDGYE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T++I+++  L  IP++ +TA             G + +I KP         ++  + 
Sbjct: 71  FTRRIRQNPALPFIPILLLTAHYQSS-VVEGLDAGADDFIRKPFDPDELHARVRSLLR 127


>gi|312959933|ref|ZP_07774448.1| putative two component response regulator transcription regulator
           protein [Pseudomonas fluorescens WH6]
 gi|311285880|gb|EFQ64446.1| putative two component response regulator transcription regulator
           protein [Pseudomonas fluorescens WH6]
          Length = 263

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I ED      +    ++ +G+     ++G  ALEL +  KPD++++D+ + ++ G  +
Sbjct: 36  VLIAEDEPEIADILTAYLKRAGFRTAHAQDGRRALELHQLLKPDLVLLDVMMPKLDGWMV 95

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++         VI +TA     D+    + G + YI KP + +  +  I+  +  
Sbjct: 96  LAELRHRGNTA---VIMLTAHDQDMDKLMGLRIGADDYIVKPFNPAEVIARIQAVLRR 150


>gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+ +D    ++     +   GY      NG +AL+LAR+ +P V ++D+ + E++G E+ 
Sbjct: 1   MLADDEPHILQFLELGLINEGYEVRTAENGSDALDLAREFRPHVAVLDVMMPEMNGFEVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +KE  +   I VI +TA     D  +  K G + YI KP S +  +  I+  + 
Sbjct: 61  QSLKETED--NIAVIMLTAKDDVDDRVKGLKLGADDYIVKPFSFNELLARIEARLR 114


>gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 240

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    ++   ++     N  +      +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQMDRFLERENYHLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +    IP+I +TA   + D     + G + Y++KP +    +  I+  +  
Sbjct: 67  ICRRLRSQNN--PIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRR 123


>gi|242280761|ref|YP_002992890.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio salexigens DSM 2638]
 gi|242123655|gb|ACS81351.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio salexigens DSM 2638]
          Length = 303

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            K++IV+D  LN+ +  DL+    Y  +  +NG +AL+     + PD++++D+ + E+ G
Sbjct: 5   AKILIVDDERLNLNVLSDLLRQD-YKVVLAKNGNQALDRVNSDNPPDLVLLDVLMPEMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ ++IK   + ++IPV+ +TA   + DE R  + G   YI KP    I    IK ++
Sbjct: 64  YEVLRKIKTSDKSKDIPVVFITALDSEHDEARGLEMGAVDYIRKPFHPPIVKARIKNHL 122


>gi|171060214|ref|YP_001792563.1| response regulator receiver modulated diguanylate cyclase
           [Leptothrix cholodnii SP-6]
 gi|170777659|gb|ACB35798.1| response regulator receiver modulated diguanylate cyclase
           [Leptothrix cholodnii SP-6]
          Length = 322

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D  +N++    +   + +      +G +AL L    +PD++++D+ +  + G 
Sbjct: 23  RRLLIVDDQPINIQALYQVF-AADHQVFMATSGPQALALCLSKQPDLVLLDVMMPGMDGF 81

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K D    +IPVI VTA + +  E      G   +ISKPI+ +I    ++ ++
Sbjct: 82  EVCRRLKADPATADIPVIFVTAHSDEAAETLGLDVGAVDFISKPINPNIVRARVRTHV 139


>gi|119485560|ref|ZP_01619835.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp.
           PCC 8106]
 gi|119456885|gb|EAW38012.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp.
           PCC 8106]
          Length = 501

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 65/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++D+  N+++   L+   GY     R+G  ALE  +   PD+I++DI++ ++SG E+
Sbjct: 8   ILIIDDHLNNLRMLSTLLRQRGYQVRNARSGSIALETVKVSLPDLILLDIKMPDMSGYEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K   E  EIPVI ++A     D+ +  K G   YI+KP      +  ++  +
Sbjct: 68  CRQLKASPETCEIPVIFISALETTFDKVKSFKVGGNDYITKPFQADEVLARVENQL 123


>gi|56966618|pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-Digmp
 gi|56966619|pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-Digmp
 gi|158430933|pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
           And Gtp-Alpha-S
 gi|158430934|pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
           And Gtp-Alpha-S
          Length = 459

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 62/120 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++V+D E N++L    +    Y      +G  AL +A +  PD+I++D+ +  + G
Sbjct: 1   SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + +++K+D   + IPV+ +TA   +GD  +  + G   +++KPI   +    ++    
Sbjct: 61  FTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120



 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+DNE   +     +    +  +   +  +A +++     D++I++   +   GL 
Sbjct: 154 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA-KISAGGPVDLVIVNAAAKNFDGLR 211

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T  ++ +   +++PV+A+     +G   +  + G    +S+PI        +K  I  
Sbjct: 212 FTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 270


>gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D++    +    +   G       NG+EAL++ +  K D+II+DI + ++ G++ 
Sbjct: 6   ILVVDDDKDIRDMINIYLVNQGMNVYTAANGIEALDILKNIKVDLIILDIMMPKMDGIKA 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+E      +P+I ++A   + D+      G + Y+ KP S    +  IK  +  
Sbjct: 66  CMKIREML---NVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRR 120


>gi|322376033|ref|ZP_08050543.1| DNA-binding response regulator SaeR [Streptococcus sp. C300]
 gi|331265516|ref|YP_004325146.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|321278983|gb|EFX56026.1| DNA-binding response regulator SaeR [Streptococcus sp. C300]
 gi|326682188|emb|CBY99804.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 232

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + +    +  +GY  L   +G E LEL R+   D+II DI +  + 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++       + P +  TA   + D+      G + +I KP S    +  +   +
Sbjct: 61  GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|262409339|ref|ZP_06085882.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_22]
 gi|262352791|gb|EEZ01888.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_22]
          Length = 941

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 696 VLVIDDNADIRSYVRRLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 754

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 755 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 810


>gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W]
 gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W]
          Length = 242

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+  ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|222099179|ref|YP_002533747.1| Response regulator [Thermotoga neapolitana DSM 4359]
 gi|221571569|gb|ACM22381.1| Response regulator [Thermotoga neapolitana DSM 4359]
          Length = 122

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 70/122 (57%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV++V+D+ +  K+    ++ +G   ++  NG  ALE   +  PD+I++DI +  + 
Sbjct: 1   MSKKVLLVDDSAVLRKIVSFNLKKAGCEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++E  E ++IPVI +TA   + DE      G +  + KP S S F+E +K+ +
Sbjct: 61  GFTVLKKLQEKEEWKKIPVIVLTAKGGEDDETIALSLGAKKVMRKPFSPSQFIEEVKRLL 120

Query: 121 GE 122
            E
Sbjct: 121 NE 122


>gi|218246324|ref|YP_002371695.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|257059371|ref|YP_003137259.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
 gi|218166802|gb|ACK65539.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|256589537|gb|ACV00424.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
          Length = 374

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 65/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L   ++   GY   +  NG +AL  A+   PD+I++DI++ ++ G ++
Sbjct: 11  ILIVDDIPENLQLLFTMLTEQGYEVRRVLNGKQALNAAKIEPPDIILLDIKMPDLDGYQV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K     ++IPVI ++A     D+ +  + G   YI+KP  L   +  ++  +
Sbjct: 71  CEKLKSTETTRDIPVIFLSALNDAFDKVKAFEVGGVDYITKPFQLQEVIIRVENQL 126


>gi|153808459|ref|ZP_01961127.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185]
 gi|149128781|gb|EDM19998.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185]
          Length = 1339

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y      NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 1075 RRILIVEDNDELRNYLLQTLSEE-YTVQTCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1133

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+ K++K + E   IPVI +TA   + D     K G + YI KP ++ I   T+   +  
Sbjct: 1134 ELCKELKNNIETSHIPVILLTALNNEKDILSGLKIGADEYILKPFNIGILKATVDNLLTN 1193

Query: 122  EA 123
             A
Sbjct: 1194 RA 1195


>gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 252

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 11/128 (8%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---------PDVIIMDI 54
           ++++VED ++   +    +E  GY      NG  AL L ++            D++I+D+
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDL 79

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            L +++GL+I + ++    +  IP++ ++A A + D     + G + Y++KP S+   + 
Sbjct: 80  MLPQVNGLDICRLLRYQGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137

Query: 115 TIKKYIGE 122
             +  I  
Sbjct: 138 RCRALIRR 145


>gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA     D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|67459442|ref|YP_247066.1| response regulator PleD [Rickettsia felis URRWXCal2]
 gi|67004975|gb|AAY61901.1| Regulatory components of sensory transduction system [Rickettsia
           felis URRWXCal2]
          Length = 450

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 63/118 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D I++D+ + E+ G
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDTILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D E   IPV+ VTA +   D  +  + G + +++KPI+       +K  
Sbjct: 61  FEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDIALFVRLKSL 118



 Score = 65.5 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD +I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDIINEYTPDFVIISSTLENEDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270


>gi|323482946|ref|ZP_08088344.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323691625|ref|ZP_08105888.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323403726|gb|EGA96026.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323504351|gb|EGB20150.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED+E   +  R L+E+  Y   +  +G E L L      D++I+DI +  ISGL+ 
Sbjct: 6   ILIIEDDEDIREGIRILLESEDYQITEAADGWEGLRLLSDDT-DLVILDIMMPGISGLKT 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++      +PV+ +TA A + D+      G + Y++KP S +  +  +K  +  
Sbjct: 65  CEEIRK---TSFVPVLFLTAKAQESDKLIGLMAGGDDYLTKPFSYAELLGRVKAQLRR 119


>gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI]
 gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 232

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|296271045|ref|YP_003653677.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296093832|gb|ADG89784.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 224

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+          +   G+       G EAL+  R  +P+++I+D+ L  I G+E+
Sbjct: 4   ILLVEDDPSVRTGLELALTRQGHSVTSCATGEEALDHVRTRRPEIVILDVMLPGIDGIEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++   L   PVI +TA     D     + G + Y+ KP+   +    I+  +  
Sbjct: 64  CRRIRKIDSL---PVILLTALGDDLDVVVGLEAGADDYVVKPVQPRVLDARIRAILRR 118


>gi|289673815|ref|ZP_06494705.1| response regulator receiver:GAF:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal:CHASE3
           [Pseudomonas syringae pv. syringae FF5]
          Length = 569

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
           +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 445 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 504

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 505 FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 564

Query: 122 E 122
           +
Sbjct: 565 K 565



 Score = 90.2 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      +   LA ++ PD I++D++L + SGL +
Sbjct: 179 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 238

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++   ++  +E     G   Y  KP +     +   K 
Sbjct: 239 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 290



 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R H  D +I+D++L ++ G 
Sbjct: 299 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 358

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 359 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 389


>gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 228

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           +VEDNE+   L    +   GY  +   +G EA E   Q+ P  +I+D+ L ++SG E+ +
Sbjct: 9   VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            I+      EI +I +TA      +    + G + Y+ KP S    M  ++  +  +
Sbjct: 69  WIRSQKR-NEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRS 124


>gi|285017115|ref|YP_003374826.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472333|emb|CBA14839.1| hypothetical two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 838

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +NM + + L+E  GY A    NG  AL    Q   D+++MD Q+  + G  
Sbjct: 533 RLLLVEDNPVNMMVAQRLLEALGYRADTVENGAAALTQLAQQAYDLVLMDCQMPVLDGYA 592

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+Q ++         +P++A+TA AM GD +R    G + Y+SKPI  +     +++++
Sbjct: 593 ATRQWRQSEANATQARLPIVAMTANAMAGDRQRCLDAGMDDYLSKPIDQTRLKACLQRWL 652


>gi|225872108|ref|YP_002753563.1| two-component osmotic transcriptional regulator kdpE, winged helix
           family [Acidobacterium capsulatum ATCC 51196]
 gi|225794265|gb|ACO34355.1| two-component osmotic transcriptional regulator kdpE, winged helix
           family [Acidobacterium capsulatum ATCC 51196]
          Length = 231

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D    +++ R  ++++ Y      NG EAL++  +  P ++I D+ + E+ G+ 
Sbjct: 2   RILVVDDEPQIVRVLRAALQSNDYEIFTASNGAEALQVYLEVNPALVITDLAMPEMDGVA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +T++I++       PVI V+    + ++ R    G + YI+KP ++   +  ++  +  A
Sbjct: 62  LTREIRQR---ASTPVIVVSVRNQEREKIRALDEGADDYITKPFAIQELLARVRVQLRRA 118


>gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1]
 gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1]
          Length = 1689

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 64/115 (55%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN LN +L  +L+  +G      ++G EAL L  Q   D ++MD Q+  + G E T
Sbjct: 1340 LLVEDNYLNQELAVELLRQAGARVTVAQHGQEALTLLAQQSFDCVLMDGQMPVMDGYEAT 1399

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+   +  ++P+IA+TA AM  D ER    G  A I+KP  +     TI +++
Sbjct: 1400 RLIRAQPQFADLPIIAMTANAMDSDRERALAAGMNAQINKPFQVQQLYSTIAQHV 1454


>gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
 gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 240

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK++IVED+    +L    +   GY      +G   +    +   D +I+D+ L  + G
Sbjct: 4   TKKILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGWDALILDLMLPGVDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +  +  +  +  P+I ++A + +       + G + Y++KP S+   +  +K    
Sbjct: 64  LEICR--RARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++ED     +L    +   G+      +G    E A +   D+I++D+ L  ++
Sbjct: 1   MGQRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I  +++        P+I +TA   + +  +  K G + YI+KP  +S  +  +   +
Sbjct: 61  GLDILSRLRHQGLT--TPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     L R  ++  GY  +   +G  AL L  +   D +I+D+ L  + GL
Sbjct: 5   KKILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLMLPHVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++I++ +    +PVI ++A   +       + G + Y+ KP S+   +  +K     
Sbjct: 65  EICRRIRQMARY--LPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRR 122


>gi|298246790|ref|ZP_06970595.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549449|gb|EFH83315.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 236

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED     +  +  +E   Y      +G  AL +  + +PD++I+D  L E+ G
Sbjct: 1   MTSILLVEDAPELARAIKQELEAQDYWVFHVGDGKSALSMHNKERPDLVILDWMLPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++   +   PV+ +TA + + D     + G + Y++KP S+   +  ++  + 
Sbjct: 61  LEVLRRMRQ---VAPTPVLMLTARSEEIDRVIGLEVGADDYLTKPFSMRELLARVRAMLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 248

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  A+  AR  +PD +++D+ L ++ GL 
Sbjct: 22  RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLA 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   E  ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 82  VLGRLRR--EYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 139


>gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 222

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL LA Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDAAISEPLARALRREGYEVTVRADGPGAL-LAGQSGVDLVVLDLGLPGMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ D      PV+ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 60  LEVCRRLRADGHT--FPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254476369|ref|ZP_05089755.1| response regulator receiver modulated serine phosphatase [Ruegeria
           sp. R11]
 gi|214030612|gb|EEB71447.1| response regulator receiver modulated serine phosphatase [Ruegeria
           sp. R11]
          Length = 423

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D+ L  ++    ++  G+  ++  +G  A+E+     PD+I+ D  +  ++GL
Sbjct: 19  RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICLADPPDLILSDWMMPGMNGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119
           E  +  +E S+      I +T+ + K +       G + +++KP+S       I   ++ 
Sbjct: 79  EFCRAFREQSKDNYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 138

Query: 120 IG 121
           + 
Sbjct: 139 LR 140


>gi|154497232|ref|ZP_02035928.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC
           29799]
 gi|150273631|gb|EDN00759.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+     L  D +  +GY  +   NG+EALE+      D+II+DI + ++ G
Sbjct: 1   MFRILVVEDDNGIRMLMEDALADAGYEPVLACNGLEALEVLESKHIDLIILDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+E     ++PV+ VTA     D+++    G + Y+ KP      +  +   + 
Sbjct: 61  YELLRQIRESGM--DMPVLLVTAKQTLSDKKKGFLLGADDYMVKPFEEEEMLLRVAALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|94500324|ref|ZP_01306857.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94427623|gb|EAT12600.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 896

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 6/124 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---PDVIIMDIQLQEI 59
           K V++VEDN +N  + +D +E  G I    +NG EA+   ++H+     +I MD Q+  +
Sbjct: 770 KHVLLVEDNPINQLVAQDTLEELGLIVDIAQNGQEAISRLQEHRSKGYSLIFMDCQMPVM 829

Query: 60  SGLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            G E ++ I+      E ++ P+IA+TA AMK D +   + G + +ISKP+ + +   TI
Sbjct: 830 DGYEASRAIRNGEAGDEHRKTPIIALTANAMKEDRDHCIEAGMDDFISKPMDIEVLKTTI 889

Query: 117 KKYI 120
           K ++
Sbjct: 890 KTWL 893



 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA------RQHKPDVIIMDIQLQE 58
           +++V+DN++N ++    + T G   +Q  +   A ++       ++   DV ++D+Q+  
Sbjct: 607 ILVVDDNKINREVLSQQLTTWGASVVQADSAEMAWKVMDSHFTEKKQAFDVALLDMQMPH 666

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            SG E+ ++I+ D   + + ++ +T+  +  D + I K G   Y SKP++       I  
Sbjct: 667 TSGTELGQKIQADPRYKGVRLVLMTSMLLNSDHKAIAKMGFCGYFSKPVTTDDLF-MILN 725

Query: 119 YIGE 122
            IG+
Sbjct: 726 VIGD 729


>gi|289166996|ref|YP_003445263.1| response regulator [Streptococcus mitis B6]
 gi|288906561|emb|CBJ21394.1| response regulator [Streptococcus mitis B6]
          Length = 232

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALEL ++   D+II D+ +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++       E P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLIGEV--QYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|237722086|ref|ZP_04552567.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_2_4]
 gi|229448955|gb|EEO54746.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_2_4]
          Length = 1317

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVED +    L +D++    Y+  + ++G+EAL+    + PD+II DI +  + GL +
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++K + +   IP+I ++A A   D+      G +AYI KP      + TI+  +  
Sbjct: 1129 INKLKSELKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186


>gi|326443818|ref|ZP_08218552.1| putative two-component system sensor kinase [Streptomyces
            clavuligerus ATCC 27064]
          Length = 1763

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1643 KVLIVDDDIRNVFALTSVLEQQGLTVLYAENGREGIEVLEQHDDVQVVLMDIMMPEMDGY 1702

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P++A+TA AMKGD E+  + G   Y++KP+     +  +++++ 
Sbjct: 1703 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWVR 1761


>gi|209525938|ref|ZP_03274472.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209493615|gb|EDZ93936.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 369

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 60/116 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+++ED E   +   +L+E   +  +   NG   +E A +H PD+I+ D+ + E+ G
Sbjct: 1   MAKVLVIEDEETIRENLVELLEIEDFDVISAENGKLGVEQAHKHLPDLILCDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             + K+++   E   IP I +TA A + D       G + Y++KP S+   +  I 
Sbjct: 61  YGVLKELRSHMETATIPFIFLTAKADRDDLREGMNLGADDYLTKPCSMEELLTAIA 116


>gi|183179350|ref|ZP_02957561.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|183012761|gb|EDT88061.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
          Length = 502

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 166 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGISAT 225

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 226 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 280



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 23  KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 82

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 83  ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 136


>gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 252

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 11/128 (8%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---------PDVIIMDI 54
           ++++VED ++   +    +E  GY      +G  AL L +Q            D++++D+
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDL 79

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            L +++GL+I + ++    +  IP++ ++A A + D     + G + Y++KP S+   + 
Sbjct: 80  MLPQVNGLDICRLLRYQGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137

Query: 115 TIKKYIGE 122
             +  I  
Sbjct: 138 RCRALIRR 145


>gi|170744479|ref|YP_001773134.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168198753|gb|ACA20700.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1937

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            ++++V+D+  N+      +E  G   L   NG + + L + +   D +++DI + E+ G 
Sbjct: 1795 RILLVDDDVRNIFSLTSALELHGLDVLFAENGRDGIALLKANPSIDAMLVDIMMPEMDGY 1854

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  ++I+ D   + +P+IAVTA AMKGD E+  + G   Y+SKP+ L   +  ++  + +
Sbjct: 1855 ETMREIRRDERFRALPLIAVTAKAMKGDREKCMEAGASDYVSKPVDLDQLLAVLRVQLEQ 1914



 Score =  113 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVED+ +   +  +L    G+  L  ++G  AL LA ++KP  I +DI L ++ G  +
Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAAALALAHRYKPHAITLDIGLPDMDGWAL 1589

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
               +K D   + IP+  ++       ++R  + G   ++ KP+     +  +++
Sbjct: 1590 LDHLKNDVRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVDREGLLRALER 1640



 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED++        L+               ALE     + D  I+D+ L ++ G E+ 
Sbjct: 1653 LLVEDDDNQRASITALLSEEDVKVFSVSTAAAALEAVAGGRFDCAIVDLGLPDLGGSELI 1712

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            +QI+   + +E+P+I  T   +   EE+  K      I K
Sbjct: 1713 EQIRATPDGEELPIIVYTGRELTEAEEQQLKQTASTIILK 1752


>gi|160896955|ref|YP_001562537.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160362539|gb|ABX34152.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1303

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 72/119 (60%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++V+DN LN ++  +L+E +G      ++G++AL+L      D ++MD+ +  + GL
Sbjct: 931  RRVLVVDDNVLNREVATELLEQAGISVQTAQDGLQALQLLDSQPFDAVLMDVHMPGMDGL 990

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T+ ++  S L+ +PVIA+TA A   +  RI   G  A+++KP+   +  ET+++ + 
Sbjct: 991  SATRALRTRSALRHLPVIALTAQAYVEERARIEAAGMNAHLTKPVDDVLLYETLQRCLR 1049



 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEI 59
           V+IV+DN    +    ++   G       +GM+AL +      ++    + ++D ++  +
Sbjct: 783 VLIVDDNASAREALAAMVRKLGMRCDTAADGMQALRMLQEAARQESPYGLALLDWRMPGM 842

Query: 60  SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            GLE+ ++++E  +L + P  + VTAF     + R  + G    + KP++ S    +I++
Sbjct: 843 DGLELARRMRERQDLVKTPAALMVTAFGRDEVQLRAAQFGLRGLLIKPLTASALRSSIRE 902

Query: 119 YIGE 122
            + +
Sbjct: 903 ALRD 906


>gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei]
 gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED+ L  +     +   G+       G + L   R   P+++++D+ L  I G
Sbjct: 1   MAAILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+       +PVI +TA     D       G + Y+ KP   ++    I+  + 
Sbjct: 61  FEVCRGIRAAGP---VPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      L R  +   G+      +G   L+  R+  P  +++D+ L  + G+E+
Sbjct: 5   VLVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRRLAPVAVVLDVGLPGLDGVEV 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++   +    PV+ VTA   + D     + G + Y++KP S    +  ++  +  +
Sbjct: 65  CRRLRAADDW--TPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRRS 121


>gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1]
 gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1]
          Length = 226

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D +    L    ++  G+   +   G EAL+       D+ I+DI L +ISGLE
Sbjct: 2   KVLVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIMLPDISGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + I+E+      P+I +TA   + D+      G + Y++KP      M  +K  +  
Sbjct: 62  ICQTIRENYNF---PIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRR 117


>gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 244

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  +   NG + L    Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++ +  +     P+I ++A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICRRARAMARY--TPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRR 122


>gi|237799880|ref|ZP_04588341.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022735|gb|EGI02792.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 464

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D+     L   L+    Y  L   +G +AL +  +  PD+I++DI +  + G 
Sbjct: 6   ATILIVDDDVHVRDLLEVLLRNQHYETLTAESGEQALAMIDERAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K       IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKARKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVESAELWLRVRNLLR 124


>gi|256425321|ref|YP_003125974.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256040229|gb|ACU63773.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1366

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + V+++EDNE      ++ ++   Y  ++  +G+   +      PD+++ D+ +  ++G+
Sbjct: 1118 QTVLLIEDNEDFRFYLKENLKDC-YHIIEGADGIAGWQKTLSGHPDLVMSDVNMSGMNGI 1176

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++ ++IK D   + IPVI VTA A + ++ R  + G   Y+ KP +  I +  ++  +  
Sbjct: 1177 DLCRKIKNDPRTKHIPVILVTAAAGEQEQLRGLEAGAADYLVKPFNFEIMLSRVRNLLAR 1236


>gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 242

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     +L  D ++ + Y      NG + +E  RQH P +I++D+ L    
Sbjct: 9   MASPILIVEDEPKLGQLLVDYLQAADYATYWLPNGNDVVEWVRQHSPSLILLDLMLPGCD 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I++      +P+I VTA + + D     + G + YI KP S    +  ++  +
Sbjct: 69  GLTLCRTIRQ---FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 277

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 43  KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 102

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++ +  +     P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 103 EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 160


>gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 233

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D+    +L +  +   GY  L   NG EA+EL  +    ++I+D+ + E++GLE+
Sbjct: 6   ILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESVQLMILDVMMPEMNGLEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + ++ +     IP++ ++A A   D+      G + Y+ KP +    +  +K  +  +
Sbjct: 66  VRAVRAEYG---IPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRS 121


>gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
 gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
          Length = 240

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 2035

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 2/118 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             KV++VEDN +N ++ ++++E  G   +   +G EALE   +   D ++MD Q+  + G 
Sbjct: 1706 AKVLLVEDNIINQEIAKEILEREGMDIVVANHGKEALEWIEKESFDGVLMDCQMPVMDGF 1765

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+ ++E      +P++A+TA AM+GD+ER    G   +ISKPI ++    T+ K+I
Sbjct: 1766 EATRLMREGGHT--LPILAMTANAMEGDKERCLACGMNDHISKPIDMAKLFITMAKWI 1821



 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 67/125 (53%), Gaps = 6/125 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
            +++IV+DN    ++  +++ +  +      +G  AL L ++        +++++D  + +
Sbjct: 1557 RILIVDDNASAREILENILRSFHFNVHSVCDGHHALSLLKEAQKEPQPYNLVLIDWMMPQ 1616

Query: 59   ISGLEITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            ++G+E  ++I+E+    Q +  I +TA++ +  ++ + +   +  + KPIS S  + TI 
Sbjct: 1617 LNGIETIRKIREEIVSDQPLMFIMITAYSKEELQKELEELFVDGILIKPISPSTLLNTIL 1676

Query: 118  KYIGE 122
              +G+
Sbjct: 1677 NVLGK 1681


>gi|37524232|ref|NP_927576.1| osmolarity response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783655|emb|CAE12507.1| Two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 239

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    +I++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESVSLIVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  VCQRLRNQSN--PVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
 gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
          Length = 837

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ EDN +N KL   L+E  G++     +G +A+E  ++   D+++MD+Q+  + G+
Sbjct: 564 RRILLAEDNLVNQKLAVLLLEKRGHLVTVASDGKQAVEAWKEGGFDLVLMDVQMPILDGM 623

Query: 63  EITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T +I+         IP+IA+TA AMKGD ER  + G + Y++KPI+     + I + +
Sbjct: 624 AATTEIRRHETRTALRIPIIAMTAHAMKGDRERCLEAGMDGYVTKPINAQALYDAIDEAL 683



 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH----KPDVIIMDIQLQEIS 60
           V+IV+DN+   ++  +++   G         +EA+ L  +     K  ++I+D Q+  + 
Sbjct: 421 VLIVDDNDTCGEIIAEMLANWGMQPTVIGGAVEAISLYAEEVTSPKFQLLIIDQQMPVLE 480

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++         I +T      +     +   +A +SKPI  S   +T+   +
Sbjct: 481 GTELLERIQKSPRGAAAKSILLTTGTFDKEPTNPLQARVDAILSKPIKQSDLFDTLMNVM 540

Query: 121 G 121
           G
Sbjct: 541 G 541


>gi|331086531|ref|ZP_08335610.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410589|gb|EGG90017.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 223

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+   + + +D +   GY  +   +G  AL   +   PD+I++D+ + ++ G
Sbjct: 1   MYKILVVDDDIDMITMVQDYLYLKGYEIMSAFDGEMALNKIK-FAPDIILLDVNMPQMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+  +I+E   L   P+I +TA   + D  +  + G + YI KP SL      IK ++ 
Sbjct: 60  FEVCMKIRE---LVSCPIIFLTAREEEEDRIKGLEIGGDDYILKPFSLKELEARIKAHLN 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|294620680|ref|ZP_06699887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291599660|gb|EFF30670.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
          Length = 218

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDN    KL    +E +GY       G EA ++  Q + D+ ++DI L EI G E
Sbjct: 2   KILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++E     ++PVI +TA     D     + G E YI+KP  L   +  ++  +  
Sbjct: 62  VFAYMRE----YDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 116


>gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 223

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+    ++   +++T G+  +   +G  A+ + R   PD++++D+ L    G E+ 
Sbjct: 2   LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVMLPGKDGTEVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +QI+ +S    +PVI +TA +   D  +  + G + YISKP      +  I+  +  
Sbjct: 62  RQIRAESG---VPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRR 115


>gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733]
 gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733]
          Length = 218

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDN    KL    +E +GY       G EA ++  Q + D++++DI L EI G E
Sbjct: 2   KILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLVLLDIMLPEIDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +       ++PVI +TA     D     + G E YI+KP  L   +  ++  +  
Sbjct: 62  VFAYM----WEYDLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 116


>gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
 gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
          Length = 241

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED +    +  + +   G+      +G++AL + + +  D++I+D+ +  + G
Sbjct: 20  MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K  +E S    +P+I +TA   + D+ +  + G + Y++KP S  + +      + 
Sbjct: 80  FSVCKLAREMS---NMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLR 136

Query: 122 EA 123
            +
Sbjct: 137 RS 138


>gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
 gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
          Length = 233

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D+   ++     +   GY  L+  +G EAL++ +  K D++I+D+ +  + G
Sbjct: 3   MSKILVCDDDREIVEAIDIYLTQEGYEVLKAYDGEEALKVLQSEKVDLLIIDVMMPRLDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E +    +P+I ++A +   D+      G + Y++KP +    +  +K  + 
Sbjct: 63  IRATLKIREQN---NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|194476803|ref|YP_002048982.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
 gi|171191810|gb|ACB42772.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
          Length = 254

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 50/109 (45%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D        +  +E  G+      +G E  E A++  PD++I D+ +    G +
Sbjct: 30  RLLLVDDEPGLRSAVQAYLEDEGFQITTASDGQEGWEKAQEILPDLVISDVMMPRCDGYK 89

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           + K ++ D  L   PVI +TA  M  D     + G + YI KP      
Sbjct: 90  LLKLLRTDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDEL 138


>gi|170749613|ref|YP_001755873.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
 gi|170656135|gb|ACB25190.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
          Length = 1936

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            +V++V+D+  N+      +E  G   L   NG + + L + +   D +++DI +  + G 
Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDGIALLQTNPNIDAMLIDIMMPGMDGY 1854

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + I+  S  + +P+IAVTA AMKGD E+    G   Y+SKPI +   +  ++  +  
Sbjct: 1855 ETMRAIRAQSAFRSLPLIAVTAKAMKGDREKCLDAGASDYVSKPIDMDQLLAVLRVQLAR 1914



 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVED+ +   +  +L    G+  L  ++G  AL LA + KP  I +DI L ++ G  +
Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHRFKPHAITLDIGLPDMDGWAL 1589

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
               +K D+  + IP+  ++       ++R  + G   ++ KP+     M  +++
Sbjct: 1590 LDLLKNDARTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640



 Score = 70.5 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VED+E        L++              ALE     + D  I+D+ L +I G 
Sbjct: 1650 RNLLLVEDDENQRASITALLDEEDVKIFGVGTATAALEALTGGRFDCAIIDLGLPDIGGS 1709

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            E+ ++I+   E +E+P+I  T   +   EE+  K      I K
Sbjct: 1710 ELIERIRATQEGEELPIIVYTGRELTAPEEQQLKHSASTIILK 1752


>gi|163813849|ref|ZP_02205243.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
 gi|158450719|gb|EDP27714.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
          Length = 223

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IV+D    + +      +  Y  L    G EAL+   +  PD+I++DI + +I 
Sbjct: 1   MKQRLLIVDDEPGIVDMMASYFSSQ-YEVLTAYCGNEALQKLARQ-PDLILLDINMPDID 58

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++I+E   L   P++ +TA     D+    + G + YI KP  L      +  ++
Sbjct: 59  GLTLCQKIRE---LITCPILFLTARVESADKIIGFQAGADDYIIKPFDLDELGARVAAHL 115

Query: 121 GE 122
             
Sbjct: 116 RR 117


>gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein
           [Campylobacter concisus 13826]
 gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus
           13826]
          Length = 219

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED      +    ++ +GY      NG EA++       D+I++D+ +  + GL 
Sbjct: 2   KILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++ +    +   PV+ +TA     D  +    G + Y+ KP      +  ++  I  
Sbjct: 62  FLQRSRAAKLV--TPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRR 118


>gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 239

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E      +  +E   Y  +   +G +AL+L  Q KP +I++D  L    G+ 
Sbjct: 7   KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S   ++P+I +TA     D       G + Y++KP  +   +  I+  +  
Sbjct: 67  VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122


>gi|254881220|ref|ZP_05253930.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_3_47FAA]
 gi|254834013|gb|EET14322.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_3_47FAA]
          Length = 311

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+       R L   + Y  +   NG E + +AR+  PD++I D+ +  ++G E
Sbjct: 51  KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNGFE 109

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +KED +   IP+I +TA     +  +  + G + YI KP +  I    +K+ I
Sbjct: 110 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 166


>gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED    +   R  +  +GY      +G   L++A ++   +II+D+ L  ++G+ 
Sbjct: 2   KLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGIA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K +++       P++ +TA     +       G + Y+ KP   +  +  I+  +  
Sbjct: 62  VCKALRQQQLT--TPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRR 118


>gi|212691246|ref|ZP_03299374.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|237712324|ref|ZP_04542805.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237726460|ref|ZP_04556941.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752033|ref|ZP_06087826.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212666478|gb|EEB27050.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|229434986|gb|EEO45063.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229453645|gb|EEO59366.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263236825|gb|EEZ22295.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++    + D++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM-ELTQYDLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K++     IP+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|219847372|ref|YP_002461805.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
 gi|219541631|gb|ACL23369.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
          Length = 441

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ ED     KL  D++  +GY      NG + +  A+   PD+II D+ +  I GL
Sbjct: 5   ARILVAEDEADVGKLLHDILTGAGYEVELVPNGDQLVRRAQAQPPDLIIADLLMPLIDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  +Q++ D+    +P++ +TA           + G + YI+KP +    +  ++ ++  
Sbjct: 65  EAIRQLRNDTRTAHLPMLILTAIGDSSRIVEGFENGADDYITKPYNRDELLARVRSHLRR 124

Query: 123 A 123
           A
Sbjct: 125 A 125


>gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
 gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
          Length = 219

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED++   +  R+ +E  GY+  +  +G E   L      D I++D+ L  + G+ 
Sbjct: 2   RVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGLPVMDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++ + D   +++PV+ +TA     D+      G + Y++KP  +   +  ++  I  A
Sbjct: 62  VLERWRRDQ--KKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRA 119


>gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 223

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGLFLASQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           KV++V+D     KL +D +    +  L+  +G +A+++        ++I+D+ + ++ G 
Sbjct: 5   KVLVVDDESRMRKLVKDFLVKKDFTVLEAEDGAQAVDVFFSTKDIALVILDVMMPKMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++I+    +  +P+I +TA A + DE    + G + YISKP S  I +  ++  +  
Sbjct: 65  QVCREIR---GVSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|218128661|ref|ZP_03457465.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697]
 gi|217989116|gb|EEC55431.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697]
          Length = 1348

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++V+DN+   +     + +  +  L+  NG +AL++ +  + D++I D+ +  + G++
Sbjct: 1100 KILVVDDNQELRQYLVSGLSSD-FNLLEADNGQKALDILKGQEVDLVITDVMMPVMDGVK 1158

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K IK++     IPV  ++A A    +    + G + YI KP S+ I    I+  + 
Sbjct: 1159 LCKAIKQNIRTCHIPVYMLSAKADTKYQLEGLQVGADDYIPKPFSMPILKTKIQNVLR 1216


>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus]
          Length = 1177

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++VEDN +N K+   ++   G +     NG  ALEL  +   D+++MD Q+  + G 
Sbjct: 908  RRVLVVEDNRVNQKVIVAMLGKFGIVPDVADNGQAALELLARSSYDLVLMDCQMPVLGGY 967

Query: 63   EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E T +++        +  PV+A+TA A  G+ E+    G + Y+SKPIS     E ++++
Sbjct: 968  EATGELRAREMSAGGRRTPVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERW 1027

Query: 120  IG 121
            +G
Sbjct: 1028 LG 1029



 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
           ++V++V+DN  N  +    +   G    +   G  AL   R         D++++D+ + 
Sbjct: 763 RRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDLHMP 822

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G E+ + +  +  L++ P + +++  + G+ E +R  G    + KP+  S+    I 
Sbjct: 823 YMDGHELARAMNAEPGLKDTPRLLLSSGGLTGEAE-LRALGIARSLLKPVRQSLLFNAIA 881

Query: 118 KYI 120
           + +
Sbjct: 882 EVL 884


>gi|24372449|ref|NP_716491.1| response regulator [Shewanella oneidensis MR-1]
 gi|24346432|gb|AAN53936.1|AE015531_2 response regulator [Shewanella oneidensis MR-1]
          Length = 339

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M+    +++V+D   N+ +   ++    Y      +G  AL L  +  PD+I++D+ +  
Sbjct: 1   MMDKATILVVDDTPENIDILVGIL-GEDYKVKVAIDGPRALALVTKTLPDLILLDVMMPG 59

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G E+ K +K++     IPVI VTA +   DE +    G   YI+KP+S  +    +K 
Sbjct: 60  MNGYEVCKLLKQEPLTCHIPVIFVTALSEVADEAQGFALGAVDYITKPVSAPVVKARVKT 119

Query: 119 YI 120
           ++
Sbjct: 120 HL 121


>gi|78046368|ref|YP_362543.1| two-component system response regulator KdpE [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78034798|emb|CAJ22443.1| two-component system response regulator KdpE [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 238

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+IV+D     +     +   GY  LQ   G E L L      +++++DI L +  G 
Sbjct: 11  ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGH 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++      +PVI +T  A + ++      G   Y++KP  +   M  I+  + +
Sbjct: 71  EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127

Query: 123 A 123
           A
Sbjct: 128 A 128


>gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 226

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED+   +      +   GY      NG++ L LAR  +PD++I+D  L  +S
Sbjct: 1   MNNHILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPTLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++I  +++      + P+I +TA     D       G + Y++KP S+   +  +K  +
Sbjct: 61  GVDICLRLRSTGV--QTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 244

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L R  +   G+  L   +      +  +   D+I++D+ L    GL 
Sbjct: 11  RIVVVDDDARIRDLLRRYLSQEGFEVLLAEDAKALNRVLTRDTVDLIVLDLMLPGEDGLS 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +++   P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 71  ICRRLRAANDI--TPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRR 127


>gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 222

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++EDN    ++ +  +E +GY AL   +G+  L LAR+  PD++I+D+ L ++ 
Sbjct: 1   MEQRILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGLPDLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++++S    +P+I +TA      +  + + G + Y++KP      +  +K  +
Sbjct: 61  GAEVTRRLRKNS---SMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|315223450|ref|ZP_07865307.1| two component system sensor histidine kinase regulator
            [Capnocytophaga ochracea F0287]
 gi|314946623|gb|EFS98614.1| two component system sensor histidine kinase regulator
            [Capnocytophaga ochracea F0287]
          Length = 1296

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 66/119 (55%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +  V++V+DN   +    D +       L+  NG EAL L + H+PD+II D+ +  ++G
Sbjct: 1044 MYSVLLVDDNPDFLNYLYDELRPLFKSVLKAVNGEEALLLLKTHQPDIIISDVMMPVMNG 1103

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++ K++KE  ++  IPVI +TA +    ++   K G +AY+SKP  + + +  I   +
Sbjct: 1104 YQLCKEVKEHLQISHIPVILLTAKSDTESQKIGYKLGADAYLSKPFDIDLLLSVIGNLL 1162


>gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1444

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVEDN+    + +  +E   +      +G+E L+    + PD+++ D  +  + G+E
Sbjct: 1189 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1247

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I++D ++  IPVI +TA      + +    G  AYI KP S    +  I++ + E
Sbjct: 1248 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1306


>gi|298490188|ref|YP_003720365.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298232106|gb|ADI63242.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 227

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 65/123 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+        D +E SGY  +   +G EAL +  ++ PD+I+ DI +  ++
Sbjct: 1   MALKILVVDDDLGTRLSISDYLELSGYSVIMADDGQEALAMVEENNPDLIVTDIVMPRLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++++ +E + +PVI +T      +     + GC+ Y+ KP  L      I+  +
Sbjct: 61  GYELVRRVRQKAEFRLLPVILLTERTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 120

Query: 121 GEA 123
             +
Sbjct: 121 ERS 123


>gi|218256845|ref|ZP_03474359.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225919|gb|EEC98569.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
          Length = 255

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E   ++ +  +E  GY      +  EAL++       ++++D+ + EISG
Sbjct: 30  MPKILVVDDEEDLCEILKFNLEIEGYEVDTAFSAEEALKM-DIASYQLLLLDVMMGEISG 88

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++++ +  +IP+I +TA   + D       G + YISKP S+   +  +K  + 
Sbjct: 89  FKMASILRKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVLR 148

Query: 122 E 122
            
Sbjct: 149 R 149


>gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
 gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
          Length = 242

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+IV+D +  + L    +E  GY      +G+E  E+A  H  D II+D+ L  + G
Sbjct: 1   MKKVLIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAYDFIILDLMLPSMGG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++I K+++++    + P++ +TA   + ++    + G + Y++KP S    +  +K  + 
Sbjct: 61  MDICKKLRQEKI--DAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37]
 gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 968

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+ +N +    ++   G       NG+EAL+  ++   D+++MD Q+  + G  
Sbjct: 691 KILLVEDHPVNQEFAMQILSGLGVDLHLAGNGVEALKQLKEQNYDLVLMDCQMPVMDGYR 750

Query: 64  ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I++  +      +P+IA+TA AM  D +R    G + Y+SKP + +  +  +++++
Sbjct: 751 ATELIRQKEQENGSPRLPIIALTANAMIEDRQRCISAGMDDYLSKPFNKAQIVVLLQRWL 810


>gi|15892244|ref|NP_359958.1| response regulator PleD [Rickettsia conorii str. Malish 7]
 gi|15619381|gb|AAL02859.1| regulatory components of sensory transduction system [Rickettsia
           conorii str. Malish 7]
          Length = 450

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 65/118 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D+I++D+ + E+ G
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D E   IPV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  CEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 67.8 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270


>gi|113968826|ref|YP_732619.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883510|gb|ABI37562.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1681

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 67/116 (57%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN+LN +L  +L+  +G       +G+EA++   Q   D ++MD Q+  + G E 
Sbjct: 1345 VLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIDRIEQQYFDCVLMDCQMPVLDGYEA 1404

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+E  +   +P++A+TA AM GD E+    G    I+KP+ +      + ++I
Sbjct: 1405 TRRIRELPQFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMARWI 1460


>gi|313159142|gb|EFR58517.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 392

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 62/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++ V+D   N+ L + ++  + Y  +    G EA+E A +  PD+I++DI + ++ G E
Sbjct: 12  TILAVDDIATNIMLLKAVLSRAKYKIVTASGGYEAIEKASKEAPDLILLDIMMPDLDGYE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + K +K D   Q+IPVI +TA     D  +  K G   Y+SKP +    +  +  +I
Sbjct: 72  VIKHLKADPATQDIPVIFLTALHNPEDIVKGFKLGASDYVSKPFNHEELITRVTHHI 128


>gi|239833976|ref|ZP_04682304.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822039|gb|EEQ93608.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 461

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + DV+++DI + ++ 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVTAHSGPEAIEICLGGQIDVVLLDILMPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K+D     IPV+ VT+     D+ R  + G + ++ KP+S    M  +K   
Sbjct: 61  GFEVCRRLKDDPRTSNIPVVIVTSLDGAEDKIRGLEAGADDFLFKPVSDLQLMSRVKSLA 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 80.9 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IV+++EL     R ++  + Y      +   AL  A     D I++         L
Sbjct: 160 ARILIVDEDELAAARLRLILGET-YRVDVASDANTALIRAIDTDYDSIVVSANFTYYDPL 218

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  Q++     + +P+I V          R  + G   Y+ +P+        ++  I  
Sbjct: 219 RLCSQLRTIERTRLVPIILVVREDEGALVVRALELGVNDYLMRPLEKLELFARLRTQIKR 278


>gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 7   RLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 66  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123


>gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
 gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
          Length = 964

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++I ED E N  + R ++   G    +  NG+EAL+  ++ +PD+++MD+ + E+ GL
Sbjct: 718 AKILIAEDIETNRFILRSMLIKLGMSVFEAHNGLEALDQLQRERPDLVLMDVSMPEMDGL 777

Query: 63  EITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+QI++  D+ L   P+IA TA  +  D ++ ++ G + +++KP   +   + ++  +
Sbjct: 778 EATRQIRKLADTALASTPIIATTAHVIGVDADKCKEAGMDGFLAKPFEQAELHQILRSVL 837


>gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1]
 gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S    +  +K  +  
Sbjct: 66  CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRR 120


>gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
            HD100]
 gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
            HD100]
          Length = 1132

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++I +D E N  LF   ++   +  ++  NG++A++  +  + D++ MD+Q+ E+ G  
Sbjct: 1012 KILIADDTEDNRTLFTHYLKNEPFEIIEAENGLQAIDQIKSGEFDIVFMDVQMPEMDGYA 1071

Query: 64   ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T +I+E  +      +P+IA+TA A+  D ++  + GC  +I+KP      +  I KY
Sbjct: 1072 ATDRIREWEKESHKPPVPIIALTAHALAEDRQKSLRAGCNDHIAKPFKKDTLLGVINKY 1130


>gi|186683397|ref|YP_001866593.1| AraC family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465849|gb|ACC81650.1| two component transcriptional regulator, AraC family [Nostoc
           punctiforme PCC 73102]
          Length = 272

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I+ED +L  ++  D +E+ G+  +  +NG   ++   +H+PD+ I DI + E+ G
Sbjct: 1   MIKVLIIEDEQLTREMLLDYLESEGFETMSAKNGRIGVQKVHEHRPDLAICDIMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + K + ++     IP I +T  + K +  +    G   Y+ KP +    +  I   +
Sbjct: 61  YGVLKTLHQNPTTAVIPFIFLTGKSNKAEIRQGMALGASDYLIKPFTPEELLGAIAAQL 119


>gi|332701531|ref|ZP_08421619.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551680|gb|EGJ48724.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 840

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++ ED+++N  L   L+E  G+      NG EA+E  ++   D+++MD ++ E+ G 
Sbjct: 710 RKILLAEDDQINQILAMSLLERRGHKVTAVENGREAIEALQRECFDLVLMDARMPEMDGE 769

Query: 63  EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T+ I+E +     + IP+IA+TA+A+KGD ER    G + YI+KP+ L    + + K 
Sbjct: 770 EATRIIRESTPPGVDKNIPIIALTAYALKGDRERFLAAGMDDYIAKPLDLEELDKVLAKV 829


>gi|320156983|ref|YP_004189362.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
 gi|319932295|gb|ADV87159.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
          Length = 242

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHKPDVIIMDIQLQEISG 61
           ++++V+D+    +L  + +  +GY      +G + L+  LA    P+++++DI L    G
Sbjct: 6   RILVVDDDSEIRELLDEYLSRNGYQVATVADGHQ-LKHYLAENGYPELVLLDIMLPGEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++ +S    +P+I +TA + + D+    + G + YI+KP +    +  IK  + 
Sbjct: 65  FSLCQFMRRES---TVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|229524692|ref|ZP_04414097.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
 gi|229338273|gb|EEO03290.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
          Length = 240

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     ++  GY  L+  NG   +E+A + + D++++DI L EI+G
Sbjct: 1   MIKILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++I+  S   +IPVI +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRIRRSS---DIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|192359662|ref|YP_001981685.1| response regulator receiver domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190685827|gb|ACE83505.1| Response regulator receiver domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 1061

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 72/117 (61%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN LN ++ + L++T G       NG EAL LA Q  PD+++MDIQL  + GLE
Sbjct: 774 RVLVVEDNSLNQEIAQTLLQTWGCAVTLADNGSEALALAAQALPDLVLMDIQLPGMDGLE 833

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++++      +P++A+TA A+ GD E     G + YI+KPI        +++++
Sbjct: 834 TSRRLRQLPGAARLPIVALTANALPGDREAYLAAGMDDYIAKPIDPRQLYLLLQRWL 890


>gi|149010945|ref|ZP_01832250.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147764581|gb|EDK71511.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
          Length = 232

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY  L   +G+EALEL ++   D+II D+ +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++       E P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 225

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED++         +   G+       G + L   R+ +PD+I++D+ L  I G
Sbjct: 1   MPSLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
 gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
          Length = 248

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D ++   L    +   G+       G+ A+  A++  PDVI++DI L +  GLE
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       +PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 78  VMRRVR--GHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135


>gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     ++  GY  L+  +G EALE+ ++++  ++IMD+ +  + G
Sbjct: 5   MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEVLKENEVHLLIMDVMMPRLDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E+S    IP+I ++A     D+      G + Y+ KP +    +  +K  + 
Sbjct: 65  IRATLKIREES---SIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 245

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   +      +   G++     +G  A++ A   +PD++I+DI L    GL
Sbjct: 19  RRVLVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 79  EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135


>gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 226

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|254474205|ref|ZP_05087596.1| two component response regulator [Pseudovibrio sp. JE062]
 gi|211956735|gb|EEA91944.1| two component response regulator [Pseudovibrio sp. JE062]
          Length = 123

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 90/120 (75%), Positives = 104/120 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E  GY  LQ+RNGMEALELAR HKPD+I+MDIQL E+S
Sbjct: 1   MQKTVLIVEDNELNMKLFNDLLEAHGYATLQSRNGMEALELARAHKPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK IKED EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ET+  ++
Sbjct: 61  GLEVTKWIKEDDELKIIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVGNFLETVSGFL 120


>gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1838

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1718 KVLIVDDDVRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1777

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P+IA+TA AMKGD E+    G   Y++KP+     +  +++++ 
Sbjct: 1778 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVEPDYLLSVMEQWMR 1836


>gi|68536723|ref|YP_251428.1| two-component system response regulator MtrA [Corynebacterium
           jeikeium K411]
 gi|68264322|emb|CAI37810.1| two-component system response regulator MtrA [Corynebacterium
           jeikeium K411]
          Length = 225

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   +++  G+  +   +G+EA++ A +H PD+I++D+ L  ++
Sbjct: 1   METKILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           G+++ K I+E      +P++ +TA     D     + G + Y+ KP     
Sbjct: 61  GIDVCKAIRE---TSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKE 108


>gi|332708874|ref|ZP_08428845.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya
           majuscula 3L]
 gi|332352416|gb|EGJ31985.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya
           majuscula 3L]
          Length = 381

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 54/120 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I++D+     L +  +   GY      NG E L    + +P ++I D  +  ++G
Sbjct: 1   MNQILIIDDDPAMQMLLKRALCHQGYEVAVASNGEEGLVQVEKLRPALVICDWIMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ +Q+K    L     I VT+     D       G + ++ KPI ++     ++  + 
Sbjct: 61  LDVCRQLKVTPGLSTTIFILVTSRNSIEDRVEGLDAGADDFLCKPIEIAELNARVRAGLR 120


>gi|294619272|ref|ZP_06698744.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291594492|gb|EFF25897.1| regulatory protein VanR [Enterococcus faecium E1679]
          Length = 233

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D +    L    ++  GY   +   G EAL+   +   D+ ++D+ L +I 
Sbjct: 1   MPDKILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E+      PVI +TA     D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFKIVQKIRENHFF---PVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 223

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           ++KV+++ED E    + +  +E +GY  L   NG   LE    +K   +I++DI L +IS
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+E S+   +PV+ +TA   + D+    + G + Y+ KP S    +  +K  +
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAIL 117

Query: 121 GE 122
             
Sbjct: 118 AR 119


>gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
 gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
          Length = 242

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S    +  +K  +  
Sbjct: 76  CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRR 130


>gi|188580175|ref|YP_001923620.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium populi BJ001]
 gi|179343673|gb|ACB79085.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium populi BJ001]
          Length = 457

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D   N++L    +    +      NG +AL +  +   DV+++D+ +  + 
Sbjct: 1   MSARVLIVDDLYPNVRLLETKLSLEYFDVAVAMNGPDALAICEKGACDVVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     +PV+ VTA     D  R    G + +++KPI  +  M  ++  +
Sbjct: 61  GFEVCRRLKSNPVTAHLPVVIVTALDQPADRLRGLDAGADDFLTKPIDDTALMTRVRSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 80.6 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 1/112 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED    +      +    +      +   AL  A +   D+ ++ + L+   GL
Sbjct: 156 ARILLVEDRPSAIDRIGTALSQH-HQVTVETDPHRALVRAPEGGFDLALVSLDLEGFDGL 214

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            +  QI+     + + +I +     K    R    G   Y+ +PI  +  + 
Sbjct: 215 RLCSQIRSLERTRNMALIMIGEMHEKARITRGLDFGVNDYLLRPIDRNELIA 266


>gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185]
 gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195]
 gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223]
 gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 241

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQQGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|99082727|ref|YP_614881.1| response regulator receiver modulated serine phosphatase [Ruegeria
           sp. TM1040]
 gi|99039007|gb|ABF65619.1| Phosphoserine phosphatase rsbU [Ruegeria sp. TM1040]
          Length = 423

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D+ L  ++    ++  G+  ++  +G +A+++ R   PD+I+ D  +  ++G+
Sbjct: 19  RRVLVVDDSRLQRRILVASLKKWGFDVVEAESGEDAMDICRADPPDLILSDWMMPGMNGI 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119
           E  +  + DS       I +T+ + K +       G + +++KP+S       I   ++ 
Sbjct: 79  EFCRAFRADSHETYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 138

Query: 120 IG 121
           + 
Sbjct: 139 LR 140


>gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71]
 gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71]
          Length = 258

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+E   +L    +E      L    G +AL+LA  +  D+I++D++L  + GL+
Sbjct: 23  RILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAWDLIVLDLRLPGMGGLD 82

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +Q++E   +   P++ +TA + + D     + G + Y+SKP S        K  +  
Sbjct: 83  ICRQLRERGNI--TPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRR 139


>gi|84393277|ref|ZP_00992038.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01]
 gi|84376102|gb|EAP92989.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01]
          Length = 222

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V++V+D+    +L  +++E  GY       G  ALE  + H  D++++D+ L  +S
Sbjct: 1   MMSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSHPVDLVLLDVMLPNLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++I +       P++ +TA           + G + YI+KP ++   +  IK  +
Sbjct: 61  GIQVARRICQRFAT---PILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
          Length = 221

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+     L+R ++E +G+  +   NG +AL+       ++II D+ + E+ G
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  +   ++PV+ +TA A   D++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 61  YDLVGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|255731748|ref|XP_002550798.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404]
 gi|240131807|gb|EER31366.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404]
          Length = 1128

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 8/127 (6%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++ EDN +N KL   ++E  G+      NG+EA E  +++K DV++MD+Q+  + G
Sbjct: 870 SYKILLAEDNLVNQKLAVRILEKQGHQIEVVENGLEAYEAIKKNKYDVVLMDVQMPVMGG 929

Query: 62  LEITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            E T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M
Sbjct: 930 FEATEKIRQWEKKSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLM 989

Query: 114 ETIKKYI 120
           +TI K I
Sbjct: 990 QTINKCI 996


>gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 228

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED      L  + +E +GY  +   +G+  L L + H  D++I DI L ++ G
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++ +    IP++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELAKEIRKTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293]
 gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293]
          Length = 242

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S    +  +K  +  
Sbjct: 76  CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRR 130


>gi|220910558|ref|YP_002485869.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219867169|gb|ACL47508.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   + L +D +E  GY  +   +G EAL +  Q  P++II D+ + E+ G 
Sbjct: 12  KKLLLVDDDPNLVLLVKDYLELQGYQVVTASHGREALRILEQGIPNMIICDVMMPEMDGY 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              K ++++   Q IPV+ ++A     D       G + Y+ KP      +  I+  + +
Sbjct: 72  TFVKSVRDNPRTQWIPVLFLSAKGQIQDRVIGLNTGADVYMVKPFEPDELIAQIEASLKQ 131

Query: 123 A 123
           A
Sbjct: 132 A 132


>gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    ++     ++  G+      +G  AL  A   +P VI++D+ +  + GL 
Sbjct: 8   RVLLVDDEPHILQFLELGLQNEGFEVRTASDGECALREAAGFEPHVIVLDVMMPGMDGLA 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +++KE  E +++ VI +TA     D       G + Y++KP S    +  I+  + 
Sbjct: 68  VCRRLKE--EGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLR 123


>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 256

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D +    L +  ++  G+      NG  ALE+A  ++PD  I+D+ +  + G  
Sbjct: 31  KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E     + P + +TA     D       G + Y++KP SL   +  ++  +  
Sbjct: 91  LLNKLRE--AGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 147


>gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1238

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL+       D ++MDIQ+  + GL  
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E     E+P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1174 ARALRERFSADELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229



 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  L+    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 968  RTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSD 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  L + P +I +TA+A +  +  +      A + KP   S   + I
Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084


>gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 236

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+
Sbjct: 11  MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 71  GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 542

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 76/118 (64%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVEDNE N+ +  +++E   +  +  RNG EA+E+A+QHKP++I+MDI++  + GL
Sbjct: 421 RRILIVEDNERNLAMTVEMLEVHNHQVVVARNGQEAIEMAKQHKPELILMDIRMPVMDGL 480

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++++   E    P+IA+TA      E+     GC A+++KPI +      +KKY+
Sbjct: 481 EATQRLRAIPEFVNTPIIAMTASTGAEAEKTYLAKGCTAHLAKPIHVKQLYAVLKKYL 538


>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
            capsulatus str. Bath]
 gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
            capsulatus str. Bath]
          Length = 1177

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++VEDN +N K+   ++   G +     NG  ALEL  +   D+++MD Q+  + G 
Sbjct: 908  RRVLVVEDNRVNQKVIVAMLGKFGIVPDVADNGQAALELLARSSYDLVLMDCQMPVLGGY 967

Query: 63   EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E T +++        +  PV+A+TA A  G+ E+    G + Y+SKPIS     E ++++
Sbjct: 968  EATGELRAREMSAGGRRTPVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERW 1027

Query: 120  IG 121
            +G
Sbjct: 1028 LG 1029



 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
           ++V++V+DN  N  +    +   G    +   G  AL   R         D++++D+ + 
Sbjct: 763 RRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDLHMP 822

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G E+ + +  +  L++ P + +++  + G+ E +R  G    + KP+  S+    I 
Sbjct: 823 YMDGHELARAMNAEPGLKDTPRLLLSSGGLTGEAE-LRALGIARSLLKPVRQSLLFNAIA 881

Query: 118 KYI 120
           + +
Sbjct: 882 EVL 884


>gi|21230642|ref|NP_636559.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|66769363|ref|YP_244125.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|21112226|gb|AAM40483.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|66574695|gb|AAY50105.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. 8004]
          Length = 1046

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 66/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ D+++MDI + E+ G+
Sbjct: 926  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 985

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D E   + G   YI+KPI +   +   + +   
Sbjct: 986  TAMRQIRANRQWQDLPIIALTAKAMADDREHCLQAGANDYIAKPIDVDKLVSLCRVWCSR 1045



 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED     +   DL     +  +   N  EAL LA + +P  I++DI L + SGL +
Sbjct: 660 ILAVEDETRFAQALVDLAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 719

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K +   + IPV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 720 LERLKRNPATRHIPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 771



 Score = 70.2 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+         L+       +      EA++       D ++ D+ L + SG 
Sbjct: 780 RRLLIVEDDSALRANLELLLARDQLEIVAVGTIAEAMDQLGSATFDCMVTDLALPDGSGY 839

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 840 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQRLRRYSKSIIIKGVRSPERLLDEVTLFLH 899

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 900 SVEASLPSDQQRLLREA 916


>gi|332534765|ref|ZP_08410592.1| chemotaxis response regulator protein-glutamate methylesterase CheB
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035789|gb|EGI72274.1| chemotaxis response regulator protein-glutamate methylesterase CheB
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 330

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IV+D   N+K+ R+++    Y     ++G  AL L  +  P +I++DI + +++G E
Sbjct: 9   RVLIVDDEPANLKVMREVLGNQ-YRMSFAKSGDAALALLEKELPKLILLDIMMPDMNGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K + +   IP+I VTA   + DE +  + G   YI+KPIS +I    +  ++
Sbjct: 68  VCQIVKRNPKTSHIPIIFVTALGDESDEYKGFELGAVDYITKPISPAIVRARVNTHL 124


>gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 225

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I +D+    +L +  ++T GY  L   +G EA  L  + +  + ++D+ +    G
Sbjct: 1   MIHILIADDDAHIRELLQYHLQTEGYTVLTASDGEEASVLLAEEQVHLAVVDVMMPNKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+      ++PVI +TA     D+ER    G + Y++KP      +  IK  + 
Sbjct: 61  YQLCEEIR---RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|329960508|ref|ZP_08298896.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
 gi|328532738|gb|EGF59525.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
          Length = 375

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 61/113 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +      NG +ALE   +  PD+I++D+ + ++SG E
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFTIATASNGRQALEQVDKENPDLILLDVMMPDLSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +Q+K +    EIP+I +TA     D  +  + G   +ISKP +    +  +
Sbjct: 71  VAQQLKANPATAEIPIIFLTALNSTADIVKGFQVGANDFISKPFNKEELIIRV 123


>gi|299147304|ref|ZP_07040369.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23]
 gi|298514582|gb|EFI38466.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23]
          Length = 1339

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V+IVED+E              +  +++RNG EALE   +  PD++I DI + E+ GL 
Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQTFKKAPDLVISDIMMPEMDGLT 1142

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++  L  IPVI +TA   + D       G +AYI KP ++ I  +T++  I
Sbjct: 1143 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199


>gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 229

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++ +D++  ++L    +   GY A++  +G EAL   R     +++I+DI + E+ G+
Sbjct: 2   KILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTTPDIELLILDIMMPEMDGM 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+++++S+   IP+I +TA     D+ R    G + Y++KP +    M  +K  +  
Sbjct: 62  QVVKELRKESQ---IPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 118


>gi|237723330|ref|ZP_04553811.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
 gi|229447852|gb|EEO53643.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
          Length = 960

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++DN         L+ T  Y  ++  +G E +  A ++ PD+II D+ +  + G+E 
Sbjct: 715 VLIIDDNADIRLYVHGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGMDGIEC 773

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 774 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 829


>gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 223

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED         + ++  GY     R+G++ L  A +   DVI++D+ + ++ G E+
Sbjct: 3   ILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVMMPKMDGWEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++++    + PV+ +TA     D  +  + G + Y+ KP S +  +  ++     
Sbjct: 63  LRRLRKE---ADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRR 117


>gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 238

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+              GY       G+ ALE      PD I++D+ + E+ G+E+ 
Sbjct: 15  LVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVMMPELDGVEVC 74

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           ++++   +    PV+ +TA    GD       G + Y+ KP +L+     ++  +  +
Sbjct: 75  RRLRGVGD--HTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRS 130


>gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 66  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123


>gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1067

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N ++   L+   G+ A    +G EA+ L  +   D+I+MD+Q+  + GL 
Sbjct: 801 RILVVEDNPINQQVAVGLLAKLGHRADVADDGAEAVALVERGDYDLILMDMQMPRMDGLT 860

Query: 64  ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T  I+     + E+ +IA+TA AM+GD +     G   Y++KPI        ++++I
Sbjct: 861 ATGIIRRLPAGKGEVTIIAMTANAMEGDRDACLAAGMNDYLAKPIDRHRLAAVLQRWI 918



 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 60/128 (46%), Gaps = 9/128 (7%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQ---TRNGMEALELAR--QHKPDVIIMDIQLQ 57
            ++++V+DN  N ++F+  +E  G           G+ A+  A+   H   ++++D  + 
Sbjct: 653 ARILVVDDNATNREVFQHQLENWGAQVDLVDGAAGGLMAIRQAQHSAHPYQLVLLDHHMP 712

Query: 58  EISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMET 115
            +SGL++   ++ D    ++  V+A +A      +     +   +  +SKP+  S  ++ 
Sbjct: 713 GMSGLDLAAVVRADPTTADLKLVLASSANPSDFRQLNASLRL--DDVLSKPVRQSALLDC 770

Query: 116 IKKYIGEA 123
           +   +G +
Sbjct: 771 LMSRLGRS 778


>gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
          Length = 227

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED E    L RD +  +G+       G EA    R+H PD++++D+ L    
Sbjct: 1   MTGTILIVEDEEKIATLLRDYLRLAGFDVCCLAGGAEAAPWVREHAPDLVLLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K ++       +P+I +TA   + D     + G + YI KP S    +  +K  +
Sbjct: 61  GLEICKDVR---VFSSVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
 gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
          Length = 916

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 73/116 (62%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+ V+DN++N++L    +  +        +G  AL+L  + + D+I+MDIQ+ E+ G+E
Sbjct: 673 KVLAVDDNQINLQLVSHWLTPNNIDVSLAHSGQAALDLCAREQFDLILMDIQMPEMDGME 732

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+++++      IP+IA+TA A+  +++ I K G  AY++KP++ S  +E I+ +
Sbjct: 733 TTRRLRQHKNTTLIPIIALTAHALSSEKQEILKSGMNAYLTKPVNESKLLEVIQDW 788


>gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 238

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ED     +  R  +   G     T  G   L+++ + + D++I+D+ L +I G+ 
Sbjct: 11  HILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLMLPDIDGMV 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++  S    +P+I +TA     +  +  + G + YI KP S    +  +   +  A
Sbjct: 71  VCRRLRARSST--LPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRA 128


>gi|26989126|ref|NP_744551.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148548500|ref|YP_001268602.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|24983960|gb|AAN68015.1|AE016434_6 DNA-binding response regulator OmpR [Pseudomonas putida KT2440]
 gi|148512558|gb|ABQ79418.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 246

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L  + ++ +G       +G +       +  D+I++DI +    GL 
Sbjct: 6   HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + +  PV+ +TA   + D     + G + Y++KP S    +  I   +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123


>gi|262382643|ref|ZP_06075780.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
 gi|262295521|gb|EEY83452.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
          Length = 1369

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++ VEDNE   +   +  +T  Y  +  +NG   LE A +  PDVI+ D+ +  ++G+
Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKAMEILPDVIVSDVMMPVMNGI 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + +K D     IPVI +TA A +  +      G + Y+ KP SL++    IK  +  
Sbjct: 1165 ECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLLKR 1224

Query: 123  A 123
            +
Sbjct: 1225 S 1225


>gi|256838865|ref|ZP_05544375.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
 gi|256739784|gb|EEU53108.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
          Length = 1369

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++ VEDNE   +   +  +T  Y  +  +NG   LE A +  PDVI+ D+ +  ++G+
Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKAMEILPDVIVSDVMMPVMNGI 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + +K D     IPVI +TA A +  +      G + Y+ KP SL++    IK  +  
Sbjct: 1165 ECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLLKR 1224

Query: 123  A 123
            +
Sbjct: 1225 S 1225


>gi|213964807|ref|ZP_03393006.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952343|gb|EEB63726.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 224

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++E  G+  +   +G+EA++ A +  PD+I++D+ L  +S
Sbjct: 1   MSSKILVVDDDPAIAEMLTMVMEREGFDTVVVDDGLEAVKAAERENPDLILLDLMLPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           G+++ + ++E      +P+I +TA     D     + G + Y++KP     
Sbjct: 61  GVDVCRTVRE---TSAVPIIMLTAKTDTVDVVLGLESGADDYVTKPFKPKE 108


>gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 251

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 13  KRVLIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNWDALILDLMLPGVDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++ +  +     P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 73  EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 130

Query: 123 A 123
           A
Sbjct: 131 A 131


>gi|294777579|ref|ZP_06743030.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
 gi|294448647|gb|EFG17196.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
          Length = 1357

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++EDNE        L     Y   +  NG E +++A    PD+II DI +    G    
Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGVDVAMSKIPDLIISDIMMPVKDGFTCC 1166

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E      IP++ +TA A   D  +  K G + Y+ KP +  +    ++  I
Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221


>gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510]
          Length = 310

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M ++  +++V+D    +    + IE +    L   +G  ALEL  Q  PD+I+MD  +  
Sbjct: 1   MKRRDMILVVDDTPDTLGFLTEAIEQADLTVLVAIDGESALELVGQITPDLILMDAVMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E  +++K+   L  IPVI +T  +      +  + G   Y++KPI +   +  I+ 
Sbjct: 61  LDGFETCRRLKQIPHLSHIPVIFMTGLSDTEHVVKGLEAGGVDYVTKPIVVDELIARIRV 120

Query: 119 YI 120
           ++
Sbjct: 121 HL 122


>gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++I+ED+E    + +  +E   Y  L+  NG +A++   +  PD++I+D+ L +I G
Sbjct: 1   MEKILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQLVKQ-PDLVILDLMLPDIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I K I++       P+I +TA     D+      G + YI+KP +    +  +K  + 
Sbjct: 60  LSICKSIRKKYYY---PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|126662822|ref|ZP_01733821.1| two-component system response regulator [Flavobacteria bacterium
           BAL38]
 gi|126626201|gb|EAZ96890.1| two-component system response regulator [Flavobacteria bacterium
           BAL38]
          Length = 229

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 4/124 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +++ VED+E    L  D +E   +      NG EA +L  +   D+ ++DI L ++
Sbjct: 1   MSKKRILYVEDDETLAFLTADNLEQH-FDVTHCNNGKEAFQLFCKETFDLCVLDIMLPDM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G EI  +I++ +  QEIP+I ++A  MK D  +  K G + Y+ KP S+   +  I+ +
Sbjct: 60  DGFEIATEIRKRN--QEIPIIFLSAKTMKEDRIKGLKLGADDYLVKPYSIEELILKIEIF 117

Query: 120 IGEA 123
           +  +
Sbjct: 118 LNRS 121


>gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED     K     +   G+  ++  +G EAL++  + +P V+++D+ L  I G E
Sbjct: 6   KVLVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLMLPGIDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I++   +  I +I +TA +   D+    + G + Y+ KP +    +  I+  + +
Sbjct: 66  VCQNIRK--SIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRK 122


>gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
 gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
          Length = 228

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED +    L R  +E +GY  L   +G   L + R +  D++I DI L ++ G
Sbjct: 1   MYSILIIEDEQRVADLLRVGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+       IP++ +TA     D+      G + Y+ KP         I+  + 
Sbjct: 61  FELCKEIRA--ANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|148257460|ref|YP_001242045.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409633|gb|ABQ38139.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 246

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+     L    +  +        +G E   +   H+ D++I+D+ L    GL 
Sbjct: 7   HILVVEDDRETRTLIAKYLRNNSCNVTTATDGREMTRIMGDHRIDLLILDVMLPGEDGLT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +S+   +P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 67  LCRKLRAESQ---VPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRR 122


>gi|317475679|ref|ZP_07934939.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908135|gb|EFV29829.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1354

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN+         +    +  L+  NG EALE  + ++ D+II D+ +  + G++
Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEVDIIITDVMMPVMDGIK 1163

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A     D+    + G + YI KP ++++    I+  + 
Sbjct: 1164 LCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMR 1221


>gi|315127978|ref|YP_004069981.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016492|gb|ADT69830.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
          Length = 239

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D++    L    +   G+I     +  +   L  +    ++++D+ L    GL 
Sbjct: 7   KVLVVDDDKRLRSLLERYLVEQGFIVRTAADSQQMDRLIERENFHLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     +IP++ +TA   + D     + G + YI KP +    +  IK  +  
Sbjct: 67  ICRRLRQKEN--QIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123


>gi|313499514|gb|ADR60880.1| OmpR_2 [Pseudomonas putida BIRD-1]
          Length = 246

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L  + ++ +G       +G +       +  D+I++DI +    GL 
Sbjct: 6   HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + +  PV+ +TA   + D     + G + Y++KP S    +  I   +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123


>gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 231

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IVED+    +L    ++ +G+       G E L LA   + D+ ++D+ L ++ G 
Sbjct: 6   ARILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVMLPDMDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T +++E    +E+P++ +TA     D  +    G + YI+KP SL   +  I+  +  
Sbjct: 66  AVTSRLRE--GGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRR 123


>gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 231

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K+++ +D+   ++     +   G+  ++  +G+EALEL + H+ +++I+D+ +  + G
Sbjct: 1   MQKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +++E      IP+I ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 61  IRTTLKVRE---TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 242

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     +L  D ++ + Y      NG + ++  RQH P +I++D+ L    
Sbjct: 9   MASPILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVDWVRQHSPSLILLDLMLPGCD 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I++      +P+I VTA + + D     + G + YI KP S    +  ++  +
Sbjct: 69  GLTLCRTIRQ---FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L +  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++++ED     +     ++  G+      +G E LELA   + D+I++D+ L  ++
Sbjct: 1   MNGRILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPSLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+     +  P++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GMEVCRRIRA---AKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|218128498|ref|ZP_03457302.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
 gi|217989389|gb|EEC55702.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
          Length = 1354

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN+         +    +  L+  NG EALE  + ++ D+II D+ +  + G++
Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEVDIIITDVMMPVMDGIK 1163

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K +K++     IPVI ++A     D+    + G + YI KP ++++    I+  + 
Sbjct: 1164 LCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMR 1221


>gi|187933060|ref|YP_001885916.1| metal dependent phosphohydrolase, HD region with Response Regulator
           Receiver modulation [Clostridium botulinum B str. Eklund
           17B]
 gi|187721213|gb|ACD22434.1| metal dependent phosphohydrolase, HD region with Response Regulator
           Receiver modulation [Clostridium botulinum B str. Eklund
           17B]
          Length = 302

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 66/116 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I++DN+ N ++ +DL+ T GY      +G +  ELAR  KPDVI++D+ L  ++G
Sbjct: 1   MGKVLIIDDNKQNCEIIKDLLYTWGYCVYLAFDGFDGFELARSVKPDVILLDVMLPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E  K++KE  E Q IP+I +T  +   D  R    G + ++SKPI        I 
Sbjct: 61  FEACKKLKETEETQNIPIIMLTVLSEVEDRIRGFNVGADVFLSKPIVYQELKNRIN 116


>gi|163794009|ref|ZP_02187982.1| regulatory components of sensory transduction system [alpha
           proteobacterium BAL199]
 gi|159180623|gb|EDP65142.1| regulatory components of sensory transduction system [alpha
           proteobacterium BAL199]
          Length = 326

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            V++V+D   N+ L   L++   Y       G  AL +A     PD++++D+ +  + G 
Sbjct: 10  TVLVVDDTPDNLVLMSGLLKDH-YRVKVANGGERALTIAATAPQPDIVLLDVMMPGLDGY 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K      +IPV+ +TA + + DE R  + G   YI+KPIS  I +  +  ++
Sbjct: 69  EVCRRLKAHPSTSDIPVVFLTARSDQADERRGLELGAVDYITKPISPPIVLARVHNHL 126


>gi|150010055|ref|YP_001304798.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides distasonis ATCC 8503]
 gi|149938479|gb|ABR45176.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Parabacteroides distasonis ATCC 8503]
          Length = 1369

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++ VEDNE   +   +  +T  Y  +  +NG   LE A +  PDVI+ D+ +  ++G+
Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKALEILPDVIVSDVMMPVMNGI 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + +K D     IPVI +TA A +  +      G + Y+ KP SL++    IK  +  
Sbjct: 1165 ECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLLKR 1224

Query: 123  A 123
            +
Sbjct: 1225 S 1225


>gi|86609394|ref|YP_478156.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557936|gb|ABD02893.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 125

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D+   ++    L+  +G       +G+EA+E  RQ KPDV+++DI +  ++G
Sbjct: 1   MSKVLVVDDSRTYLETISSLLSENGLEVSTATDGVEAMECIRQQKPDVVVLDIVMPRMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +++K D   + I ++  +      D E  R+   +AY++KP      + TIK  + 
Sbjct: 61  YEVCREVKGDESTKHIRIVMCSTKDQTFDIEWARRNQADAYVTKPFKPQELLATIKHQLR 120

Query: 122 E 122
           E
Sbjct: 121 E 121


>gi|83594261|ref|YP_428013.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577175|gb|ABC23726.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 250

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED      + R  +E +G   +  R+G  AL+L     PD++++D+Q+  + G  +
Sbjct: 23  ILVVEDEPDIADILRAYLERAGMRVVSARDGRRALDLHASLNPDLLLLDVQMPVMDGWRV 82

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++      + PVI +TA     D+    + G + Y+ KP + +  +  ++  +  
Sbjct: 83  LSELRHRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVRAVLRR 137


>gi|16801578|ref|NP_471846.1| hypothetical protein lin2516 [Listeria innocua Clip11262]
 gi|16415038|emb|CAC97743.1| lin2516 [Listeria innocua Clip11262]
          Length = 231

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + E++
Sbjct: 1   MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++ +  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 61  GLEVCRLMRNNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|282878424|ref|ZP_06287210.1| response regulator receiver domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281299410|gb|EFA91793.1| response regulator receiver domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 231

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +   ++ +  +ET GY+     +  EA+ +      +++++D+ + E+SG  
Sbjct: 7   RILVVDDEQDLCEILKFNLETEGYVVETANSAEEAM-MMDISSFNLLLLDVMMGEMSGFS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K++KE+ +   IP+I +TA   + D       G + YISKP S+   +  I+  I  
Sbjct: 66  MAKKLKENPKTASIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRR 124


>gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 7   RLLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 66  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123


>gi|255284065|ref|ZP_05348620.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
 gi|255265410|gb|EET58615.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
          Length = 235

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +  R L+E  GY   +  NG   LE   ++   ++I+DI +  ISG+  
Sbjct: 6   ILMIEDDPAIREGVRILLEGEGYHVEEAENGRMGLEKLTENT-HLVILDIMMPGISGIRT 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++   +  +PV+ +TA   + D+      G + Y+ KP S +  +  +K  +  
Sbjct: 65  CEEIRK---VSNVPVLFLTAKEQESDKVIGLTAGGDDYLVKPFSYAELLARVKALLRR 119


>gi|209523104|ref|ZP_03271660.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209496255|gb|EDZ96554.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 410

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 67/118 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E N +L    +   G+  L+  NG EA+ +  Q +P +I MD+++  + G E
Sbjct: 203 RILVVDDRESNQQLLVKFLIPVGFEVLEAENGQEAIAIWNQWEPHLIWMDMRMPVMDGYE 262

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            TK+IK   + Q   +IA+TA A + + E +   GC+ ++ KP    I  E + K++G
Sbjct: 263 ATKRIKSHLKGQATVIIALTASAFEEEREVVLSAGCDDFVRKPFEEQILFEKMAKHLG 320


>gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 238

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED+   + L    ++          +G+ ALE A+    D+I++D+ + +++
Sbjct: 6   MANQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++    +  P+I VTA   + D+    + G + YI+KP S+       K  +
Sbjct: 66  GVEVCRELRK---TKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVM 122

Query: 121 GEA 123
             +
Sbjct: 123 RRS 125


>gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023]
          Length = 231

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + +++
Sbjct: 1   MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++ +  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 61  GLEVCRLMRNNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L    ++  GY   +  +G+EA  +  Q    + I+D+ +   +G
Sbjct: 1   MAAILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNILSQRTVHLCIIDVMMPNKNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+E   L ++P++ VTA     D+ +  + G + YI KP      +  +K  + 
Sbjct: 61  WELCKEIRE---LYDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|293401400|ref|ZP_06645543.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305038|gb|EFE46284.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 238

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED +   +     ++  GY  L   NG E L+L   +   + I+DI +  + 
Sbjct: 1   MEHTVLVVEDEQGIREAIAIYLKNQGYQVLLAENGKEGLDLIHTNDVHLAIVDIMMPIMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ +T +++++ +    PVI ++A +   D+      G + Y++KP      +  ++  +
Sbjct: 61  GITMTMELRKNYDF---PVIFLSAKSEDIDKINGLNIGADDYVTKPFGSMELLARVRSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|291278594|ref|YP_003495429.1| twitching motility two-component system response regulator PilH
           [Deferribacter desulfuricans SSM1]
 gi|290753296|dbj|BAI79673.1| twitching motility two-component system response regulator PilH
           [Deferribacter desulfuricans SSM1]
          Length = 119

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 72/119 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I ED+    ++ +  +E  G+  +   +G  ALE  ++ + DVII+D+ +   +G
Sbjct: 1   MKKILIAEDSSTEREIMKKALEAEGFTVVAVADGDAALEEVKKSEYDVIILDVIMPGKNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ ++IK D  L++ PVI VT+   + D+   ++ G + YI KP ++ + + T+K+++
Sbjct: 61  YQVCREIKRDELLKDTPVIIVTSKGQESDKFWGKRQGADEYIVKPFNVDLLISTVKRFL 119


>gi|254881160|ref|ZP_05253870.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 4_3_47FAA]
 gi|254833953|gb|EET14262.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 4_3_47FAA]
          Length = 1357

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++EDNE        L     Y   +  NG E +++A    PD+II DI +    G    
Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGVDVAMSKIPDLIISDIMMPVKDGFTCC 1166

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E      IP++ +TA A   D  +  K G + Y+ KP +  +    ++  I
Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221


>gi|167644818|ref|YP_001682481.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347248|gb|ABZ69983.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 859

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D+ +N ++ +  +       ++  NG EAL+       D+++MD+ +  + GL
Sbjct: 722 RRVLVVDDHPVNRRVIKLFLAPFDCDLVEVENGREALDALEAEPFDLVLMDVNMPVMDGL 781

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++++ D     +PVIA+TA  M+   +   + G +A+I+KPI L   +  + + +
Sbjct: 782 EATRRLRRDPRWMTLPVIALTADVMRSQIDTCLEAGMDAHIAKPIDLRDLLSVMVQVL 839


>gi|88861074|ref|ZP_01135709.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
 gi|88817002|gb|EAR26822.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
          Length = 241

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GYI     N  +   L  +    ++++D+ L    GL 
Sbjct: 9   KILVVDDDMRLRSLLERYLVEQGYIVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     +IP++ +TA   + D     + G + YI KP +    +  IK  +  
Sbjct: 69  ICRRLRQKEN--DIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 125


>gi|325925213|ref|ZP_08186624.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325544380|gb|EGD15752.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 238

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+IV+D     +     +   GY  LQ   G E L L      +++++DI L +  G 
Sbjct: 11  ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGH 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++      +PVI +T  A + ++      G   Y++KP  +   M  I+  + +
Sbjct: 71  EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127

Query: 123 A 123
           A
Sbjct: 128 A 128


>gi|300866839|ref|ZP_07111516.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335149|emb|CBN56676.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1317

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 65/119 (54%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++V+D + N  L   L+   G    +  NG EA++L ++ +PD+  MDI++  + G 
Sbjct: 1101 RRILVVDDRQENRLLIIKLLSQLGLEIREATNGQEAVKLWQEWEPDLTWMDIRMPVLDGY 1160

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+QI+   E +   +IA+TA A + D       GC  YISKP         +++Y+G
Sbjct: 1161 EATRQIRAMEENKNGIIIALTAQASQSDRSLALAAGCNDYISKPFREETLFIKMREYLG 1219


>gi|283780370|ref|YP_003371125.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283438823|gb|ADB17265.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 236

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 71/123 (57%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K KV+++ED+    ++    ++ +GY  L   +G + L  A+   PD++++D+ L  I
Sbjct: 1   MAKTKVLVIEDDRSLAEVLSYNLKQAGYEVLTASDGQDGLLQAQLKTPDIVLLDLMLPVI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL++ ++++ DS ++++ +I +TA A + DE      G + Y++KP S+ + +E +K  
Sbjct: 61  DGLDVCRRLRADSSMRDLLIIMLTAKAEETDELVGFSLGADDYVAKPFSVKVLLERMKAL 120

Query: 120 IGE 122
              
Sbjct: 121 RRR 123


>gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 237

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +    L    +    +      +G EAL LA +  PD++++D+ L ++ G +
Sbjct: 7   RVLVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALAAEFDPDLVVLDVMLPDLDGFQ 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       +PV+ +TA +   D       G + Y+SKP SL   +  I+  +  +
Sbjct: 67  VAQRLR--DVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRS 124


>gi|114569826|ref|YP_756506.1| response regulator receiver protein [Maricaulis maris MCS10]
 gi|114340288|gb|ABI65568.1| response regulator receiver protein [Maricaulis maris MCS10]
          Length = 144

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 79/120 (65%), Positives = 105/120 (87%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLF DL+E  GY  LQT++G +ALE+AR+H PD+I+MDIQL E+S
Sbjct: 24  MPKKVLIVEDNELNMKLFNDLLEAHGYETLQTKDGFKALEMAREHTPDLILMDIQLPEVS 83

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+TK +K+D  L  IPV+AVTAFAMKGDEERIR+GGCEAY+SKPI+++ F++T+++++
Sbjct: 84  GLEVTKWLKDDDSLAAIPVVAVTAFAMKGDEERIREGGCEAYLSKPITVATFIQTVRQFL 143


>gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes]
          Length = 232

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + E++
Sbjct: 3   MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++++  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 63  GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 232

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL-ARQHKPDVIIMDIQLQEISGL 62
           +V++V+D +  ++L    ++   Y  LQ  +G+EAL+L A+    D++++DI + + +GL
Sbjct: 2   RVLVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKKNGL 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++       PVI +TA A   D+      G + Y++KP +    +  IK     
Sbjct: 62  EVLEEIRKQGL--NFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRR 119


>gi|237726077|ref|ZP_04556558.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. D4]
 gi|229435885|gb|EEO45962.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides dorei 5_1_36/D4]
          Length = 1357

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++EDNE        L     Y   +  NG E +++A    PD+II DI +    G    
Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAENGEEGVDVAISKIPDLIISDIMMPVKDGFTCC 1166

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E      IP++ +TA A   D  +  K G + Y+ KP +  +    ++  I
Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221


>gi|222054940|ref|YP_002537302.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221564229|gb|ACM20201.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 1215

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV++V+D+  N+     ++     + ++  NG EAL   ++H   D+++MDI + E+ G
Sbjct: 1093 KKVLLVDDDMRNIFSLTSILAEKHMVVVEAENGREALARLQEHPDVDLVLMDIMMPEMDG 1152

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  + I+ D     + +IA+TA A+KGD+E+  + G   YISKPI +   +  ++ ++
Sbjct: 1153 YETIRTIRNDPHFSRLSIIAMTAKALKGDQEKCLEAGASDYISKPIEVEKLLSLMRVWL 1211



 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++++ED+    ++  +++   G+ AL   NG + L LA    PD II+D+ L  + G 
Sbjct: 825 RSILLIEDDLNFARILMEMVRERGFAALAAANGEDGLYLADHCLPDAIILDVMLPHVDGW 884

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS---IFMETIKKY 119
            + + +KE+   + IPV  +T      D ++    G   ++SKP+          TI+  
Sbjct: 885 GVMRLLKENPRTRHIPVHFLTCL---EDRQKAMSMGAIGFVSKPVDPDQLAELFATIENA 941

Query: 120 IGEA 123
           I  +
Sbjct: 942 ISRS 945



 Score = 80.2 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K++IVED+    +    L+E          +G EA+EL  +   D +++D+ L ++SG 
Sbjct: 947  RKLLIVEDDPAESRGLVALLEGRDVAISVAGSGKEAIELLSREAFDCMVLDLGLSDMSGF 1006

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92
            ++ + I+ + E + +PVI  +  ++  +EE
Sbjct: 1007 DLLEHIEHEDEKRRLPVIIHSGRSLSHEEE 1036


>gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CDC1551A]
          Length = 234

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +   G+      +G  A+        D +++D+ L  I G E
Sbjct: 5   RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++        PV+ +TA     D      GG + Y++KP +L      ++     
Sbjct: 65  VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 121


>gi|310643897|ref|YP_003948655.1| two-component response regulator, potential cognate sensor kinase
           is yxdk [Paenibacillus polymyxa SC2]
 gi|309248847|gb|ADO58414.1| Two-component response regulator, potential cognate sensor kinase
           is YxdK [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED+     L +  +E  GY  +   N  + L + ++ KPD++I+D+ L    G
Sbjct: 1   MHKILIVEDDPQISSLLQSYLEKYGYQGVVVSNFDQVLGVFQKVKPDLVILDVNLPRFDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               +QI+  S     P++ V+A   K D+    + G + YI+KP    + +  ++  + 
Sbjct: 61  FYWCRQIRTQS---TCPILFVSARDDKMDQVIALQNGADDYITKPFHPEVLLAKVESNLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|307824965|ref|ZP_07655187.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307734012|gb|EFO04867.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 659

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 67/117 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D   N+ +  + +E+ GY  +  ++GME L+ A   KPD+I++D+ +  + G E
Sbjct: 15  TILIVDDTPTNLGVVVESLESRGYRLVVAQDGMEGLQRAAFVKPDLILLDVMMPGMDGFE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K +++  EIPVI +TA A    +    K G   YI+KP+ +   +  +  ++
Sbjct: 75  VCRHLKANADTAEIPVIFMTALAETEHKITGFKVGGVDYITKPMQIDEVIARVGTHL 131


>gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 269

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  A++ AR+ +PD +++D+ L ++ GL 
Sbjct: 44  RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   EL ++PV+ +TA     D       G + Y++KP SL   +  ++  I  A
Sbjct: 104 VLGRLRR--ELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRA 161


>gi|258516163|ref|YP_003192385.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779868|gb|ACV63762.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 920

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           +K+++V+D+  N+      +E  G   L   NG + + +  ++   D+++MDI + E+ G
Sbjct: 800 RKILLVDDDMRNVFALTVALEKYGAKVLFAENGKDGINVLNKNPGIDLVLMDIMMPEMDG 859

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+   E + +PVIA+TA AMK D E+    G   YI KP+++   +  I+ ++
Sbjct: 860 YEAIQTIRRMPEYKTLPVIALTAKAMKNDREKCISVGASDYICKPVNVEQLLSLIQVWL 918


>gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 703

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VEDN +N KL    ++  G   L   NG EA+E  R+ K  +I+MD Q+ E+ G 
Sbjct: 563 KRILLVEDNPVNQKLASIQLKKFGLPLLAVSNGREAVEAVRREKYSLILMDCQMPEMDGF 622

Query: 63  EITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I+     Q   +P++A+TA AM+GD E     G + YISKPI  +     + ++I
Sbjct: 623 EATREIRRIEAEQGGHVPIVAMTARAMRGDREECLACGMDDYISKPIRSADLRRILNRWI 682


>gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+      +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 219

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +  R  ++  GY     ++G  AL        +++I+D+ L  + GLE
Sbjct: 2   RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++       +PV+ +TA     D       G + Y+ KP  ++     ++  +  +
Sbjct: 62  LLKRLRA--AGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRS 119


>gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1138

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ EDN +N +L   L+  +G  A    NG EA+E       D+++MD+Q+  + GL
Sbjct: 879 ARVLVAEDNPVNQQLTLALLRRAGLNAEAVSNGEEAVEAVTARPYDLVLMDVQMPVMDGL 938

Query: 63  EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T++I+  S  +  IP+IA+TA AM+GD     + G + Y+SKPI+    ++ I +++
Sbjct: 939 MATRRIRGLSGRVARIPIIALTANAMQGDATICLEAGMDDYLSKPINARKLLDAIARFV 997



 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57
           +++++V+D  +N  L    ++  G +     NG  ALEL           D  I+D ++ 
Sbjct: 691 RRLLLVDDIPVNRDLLTRQLDGFGIVTDAAENGETALELLLAAARGGTPFDAAILDHRMP 750

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK---GGCEAYISKPISLSIFME 114
            ++G E+ ++I+   EL  + +    A A        R+      + ++ KPI  S   +
Sbjct: 751 GLTGPEVARRIRAIPELAGMRL----ALASSQ-RLEGRQRDWAPVDTHLPKPIRFSTLCQ 805

Query: 115 TIKKYI 120
            + + +
Sbjct: 806 CLARLL 811


>gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium
           UCYN-A]
 gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family
           [cyanobacterium UCYN-A]
          Length = 233

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++V+D        +  +E +G  I     N  EA +L     PD+II D+ + EI G +
Sbjct: 7   ILLVDDEPSVCDSIQAYLEYNGDLIVKIANNAKEAWKLLETTIPDIIISDVMMPEIDGYQ 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++I+ ++ LQ IP+I +TA  M  D  +    GC+AY+ KP         +K ++  
Sbjct: 67  FLERIRHNNRLQTIPLIFLTARGMTADRIKGYNAGCDAYLPKPFDPEELEAIVKSFLER 125


>gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 228

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED      L  + +E +GY  +   +G+  L L + H  D++I DI L ++ G
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++ +    IP++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELAKEIRKTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 235

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I +D E  ++L    +E    I    +NG++A  +   +  D+ I+DI + +I G
Sbjct: 1   MAKILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFNIIENNNVDLAIIDIMMPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K+I+E  +   IPVI ++A +    +    + G + YI+KP +    +  +K  + 
Sbjct: 61  YHLVKKIREKYK---IPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|182419626|ref|ZP_02950871.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237665786|ref|ZP_04525774.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376516|gb|EDT74093.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658733|gb|EEP56285.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 249

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++D    ++L    +   GY   +  NG + + +  + K D+I++DI +  I G +I
Sbjct: 23  VLIIDDEVEIVELMEVYLVNEGYKVFKAYNGNDGINIVDKEKIDLIVLDIMMPGIDGFQI 82

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++D     IP+I ++A +   D+ +    G + Y+ KP +   F+  +K  I  
Sbjct: 83  CMKIRKD---YNIPIIMISAKSQDMDKIQGLSVGADDYMVKPFNPMEFIARVKSQIRR 137


>gi|27363525|ref|NP_759053.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6]
 gi|37679274|ref|NP_933883.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016]
 gi|27359641|gb|AAO08580.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6]
 gi|37198017|dbj|BAC93854.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016]
          Length = 242

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHKPDVIIMDIQLQEISG 61
           ++++V+D+    +L  + +  +GY      +G + L+  LA    P+++++DI L    G
Sbjct: 6   RILVVDDDSEIRELLDEYLSRNGYQVATVADGHQ-LKHYLAENGYPELVLLDIMLPGEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + ++ +S    +P+I +TA + + D+    + G + YI+KP +    +  IK  + 
Sbjct: 65  FSLCQFMRRES---TVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator
           [Geobacter uraniireducens Rf4]
 gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter uraniireducens Rf4]
          Length = 223

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED        R  +  SG+      +G E L+LA   + D+II+D+ L  + G +
Sbjct: 2   RILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVMLPGVDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+I+     ++ PV+ +TA     D  +  + G + Y+ KP + S  +  I+  +  
Sbjct: 62  IIKRIR--GTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRR 118


>gi|329957618|ref|ZP_08298093.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
 gi|328522495|gb|EGF49604.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
          Length = 1492

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN       R +  +  Y  ++  NG+E L+ A +  PD+II D+ + E  G+ +T
Sbjct: 1222 LLVEDNSELRIFLRSIFASE-YRIVEAANGVEGLDKALKFLPDIIISDVMMPEKDGIAMT 1280

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D     IP++ +TA +    +    + G + YI+KP S +     +K  + +
Sbjct: 1281 RELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLAQ 1337


>gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 228

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++I +D           ++  G++     +G +ALE  R   PDV+I+D+ + ++ 
Sbjct: 1   MDKRILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++      + + ++ +TA     D+    + G + ++SKP  L   +  IK  +
Sbjct: 61  GYEVCRRL---ESRKGVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALV 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+E   +L R  ++  GY+  +  +G EA  L  +    + ++DI +    G
Sbjct: 1   MIHILLADDDEHMRQLVRHYLQLEGYVVHEAEDGEEASGLLAKQHIHLAVVDIMMPHKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      + P+I +TA     D+E+    G + Y++KP      +  IK  + 
Sbjct: 61  YEVCEEIRS---YYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
 gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
          Length = 234

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED     +  +  +E  G+ A    NG  A E   Q   D+I++D+ L  + G+E
Sbjct: 12  RVLIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++    +  +P+I +TA     D       G + YI+KP ++   +  +K  +  
Sbjct: 72  ICRRVRA---VTNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALRR 127


>gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 230

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     +     +E  GY  ++  +G EAL L   H PDVI++D+ L ++ G 
Sbjct: 6   KTILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHGPDVILLDLGLPDMDGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + +          VI ++  + + D+      G   Y++KP SL      I+  +  
Sbjct: 66  ELLRTL---PVWLRAKVIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRR 122


>gi|253568433|ref|ZP_04845844.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|251842506|gb|EES70586.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 231

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K    V++VED      + +D +E +G+      +G E L L  + +PDV++ D+ + 
Sbjct: 1   MNKNDITVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFFELRPDVLVADVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ G E+ ++I++    ++ PV+ +TA +   D     + G   Y+ KP  +   +  IK
Sbjct: 61  KMDGFEMVRRIRQTD--KQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIK 118

Query: 118 KYIGEA 123
             +G+A
Sbjct: 119 ALMGKA 124


>gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 774

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 71/115 (61%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED  LN K+   +I + GY A    NG EA+E  + H  D+++MD+Q+ E+ GLE
Sbjct: 639 RILLAEDIALNQKVALYMITSFGYQADVANNGKEAVEALQSHAYDLVLMDVQMPEMDGLE 698

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T+ I+ +S + +  ++A+TA A++GD E     G   YI KPI+    ++T+++
Sbjct: 699 ATRIIRANSNIVQPHIVAMTAHALQGDREECLSAGMNGYIRKPITKDELLKTLQQ 753



 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-ELARQHKPDVIIMDIQLQEISG 61
           K ++I+  N+ N+       E+ G    Q  +   AL EL  + + D++ +   L  +  
Sbjct: 491 KNLLIITSNQTNLAHLALQAESWGLNVSQAASPEAALVELRAKPRFDIVAIQKPLHGLGL 550

Query: 62  LEITKQIKEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +E+  +I+E    Q +P+I + +            K G  A + KP+  S F   + + +
Sbjct: 551 MEMALRIRELPGYQIVPLIVMKSRKHTHTTPVDSLK-GNVAVLRKPVRRSQFYNALVRLL 609


>gi|193213739|ref|YP_001994938.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087216|gb|ACF12491.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 787

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN  N  + +  +ET         NG  ALE     K D+I+MD+Q+ E+ G E
Sbjct: 524 RILLVEDNYFNQIVAKKTLETFQVSCDVAENGRVALERLAAAKYDLILMDVQMPEMDGYE 583

Query: 64  ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I++    L EIP+IA+TA A+KGD+E+    G   YISKP       E +  +
Sbjct: 584 ATRLIRKMPPPLNEIPIIAMTAGALKGDDEKCINAGMNDYISKPFDPERLYELLAAH 640



 Score = 64.4 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           KV+ +ED+ ++   F  LI+   +        +   A  +  +    VII D  L + + 
Sbjct: 6   KVLYIEDDRVDQIAFERLIKQQSHTYDYKVVNSVAAAKAMLVKEDFHVIITDYNLGDGTA 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            ++ +Q        + PVI +T    +       K G   Y+ K
Sbjct: 66  SDVLEQ------FHKTPVIFITGTGDEEIAVNAMKSGAYDYLVK 103


>gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 227

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I+ED        ++ +E   +      +G   L+LA  ++ D++++D  +  ISG+E
Sbjct: 2   RLLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMIPGISGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++++    ++P+I +TA     D       G   YI KP      +  I+  +  
Sbjct: 62  VCRRLRKEGN--DVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRR 118


>gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1238

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL+       D ++MDIQ+  + GL  
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E     E+P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1174 ARALRERFSADELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229



 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  L+    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 968  RTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSD 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  L + P +I +TA+A +  +  +      A + KP   S   + I
Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084


>gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
 gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
          Length = 234

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +  R  ++  GY     ++G  AL        +++I+D+ L  + GLE
Sbjct: 17  RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLE 76

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++       +PV+ +TA     D       G + Y+ KP  ++     ++  +  +
Sbjct: 77  LLKRLRA--AGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRS 134


>gi|219847767|ref|YP_002462200.1| response regulator receiver protein [Chloroflexus aggregans DSM
           9485]
 gi|219542026|gb|ACL23764.1| response regulator receiver protein [Chloroflexus aggregans DSM
           9485]
          Length = 390

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K   ++IV+D++   ++   ++  +GY   +  +G EAL+   +  PD +I D+ L  I
Sbjct: 1   MKPPTLLIVDDDDAVAEMIELMLRNAGYEVRRAASGEEALQQIFKSPPDALICDVLLPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K++++    + +P++ +TA      +    + G   Y++KP      +  +K  
Sbjct: 61  DGYTLCKRVRQHPLTRMLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPPELVYRVKNL 120

Query: 120 IGE 122
           +  
Sbjct: 121 LTR 123


>gi|186475955|ref|YP_001857425.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192414|gb|ACC70379.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 248

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+    +L    +  +G  A     G +        +PD+I++D+ L   SGL+
Sbjct: 6   HVLIVDDDRDIRELVGTYLTRNGVRATLASGGRQMRAALAAERPDLIVLDLMLPGESGLD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   E Q +P++ +TA + + D     + G + Y++KP ++   +  I+  +  +
Sbjct: 66  LCRELRA-GEFQTVPILMLTALSEETDRVVGLEMGADDYLAKPFAVRELLARIRAILRRS 124


>gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 232

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 11  RLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGFE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 70  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 127


>gi|330809931|ref|YP_004354393.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
 gi|327378039|gb|AEA69389.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
          Length = 1160

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            +KV++V+D+  N+      +E  G I +  RNG+EA++   +    D+++MD+ + E+ G
Sbjct: 1036 RKVLLVDDDVRNIFALTSALEAKGAIVVIGRNGLEAIDRLNEFDDIDLVLMDVMMPEMDG 1095

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T  I++D   +++P+IAVTA AMK D+ER    G   Y++KPI L      I+ ++
Sbjct: 1096 FEATALIRKDPRWRKLPIIAVTAKAMKDDQERCLAAGSNDYLAKPIDLDRLFSLIRVWL 1154



 Score = 99.0 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E  +LA Q  PD I++D++L + SGL +
Sbjct: 770 ILVIEDEPKFARILFDLAHELGYQCLVAHGADEGFDLALQLAPDAILLDMRLPDHSGLTV 829

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +E + IPV  ++      D        G   Y  KP +     +   + 
Sbjct: 830 LQRLKERAETRHIPVHVIS----VEDRVEAAMHMGAIGYAVKPTTREELKDVFARL 881



 Score = 73.6 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++VED++L       LI              +AL+L R +  D +I+D++L ++ G 
Sbjct: 890 KRVLLVEDDDLQRDSITRLIGDDDIEITAVGLAQQALDLLRSNVYDCMIIDLKLPDMLGN 949

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           ++ K++  +      PVI  T   +  DEE 
Sbjct: 950 DLLKRMSSEDICSFPPVIVYTGRNLTRDEEA 980


>gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D+    ++  +     GY   Q  NG E L++ +     +I++D+ + ++ 
Sbjct: 1   MKENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  +  +++E S    IPVI +TA   + D+ +    GC+ YI KP   +     +   +
Sbjct: 61  GYTMLCKLRESS---NIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRAEGHA--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341]
 gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341]
          Length = 240

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
 gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
          Length = 304

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 60/120 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+   +    + ++ +G   L   +G  AL +  +  PD I+MD  +  + G E
Sbjct: 8   TVLVVDDSPETLGFVTEALKKTGVAVLVATSGETALNICSKVTPDTILMDAVMPGLDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +QIKE+  LQ +PVI +T  +      +  + G   +++KPI +      IK ++  A
Sbjct: 68  TCRQIKENPALQHVPVIFMTGLSETEHVVKALESGGVDFLTKPIDVDELKARIKVHLKNA 127


>gi|315612077|ref|ZP_07886994.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315879|gb|EFU63914.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 232

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + +    +  +GY  L   +G E LEL R+   D+II DI +  + 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++       + P +  TA   + D+      G + +I KP S    +  +   +
Sbjct: 61  GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 228

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E   +    L+   G+  +   +G   L    QH+  ++++D+ L  +SG
Sbjct: 1   MTSVLIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREFSQHEISIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K++++ S    +P+I VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCKKLRQSS---TVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|222055335|ref|YP_002537697.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221564624|gb|ACM20596.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 234

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED     +     +E          +G EALE  +  + D+II+D+ L  I G  
Sbjct: 7   HILLVEDEIHLARGICFNLELENLRVSHVESGEEALERVKFERFDLIILDVMLPGIDGFV 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++E      +PV+ +TA + + D      GG + Y++KP +L  F+  +K  +  +
Sbjct: 67  VCKKVRELD--ARVPVLMLTARSDERDRIAGLAGGADDYLTKPFNLDEFLLRVKGMLRRS 124


>gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 231

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D+   + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + E+ 
Sbjct: 1   MTTSILIADDDREIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + +++   L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 61  GLEVCRLMRKSGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 248

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|332141179|ref|YP_004426917.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551201|gb|AEA97919.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 337

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D  +N+++ + L+  + Y  +  RNG EAL+LA   +P++I++D+ +  ++G E
Sbjct: 14  TLLLVDDEPVNLRVLKQLL-ANDYQLIFARNGEEALKLAPSRQPNLILLDVMMPGLTGFE 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +Q+K+    ++IPVI VTA   + DE +    G   YI+KPIS +I    +K ++
Sbjct: 73  VCRQLKQQENTKQIPVIFVTALNDEQDETQGFDAGAVDYITKPISPAIVKARVKTHL 129


>gi|121726691|ref|ZP_01679916.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|147673571|ref|YP_001218202.1| osmolarity response regulator [Vibrio cholerae O395]
 gi|262170044|ref|ZP_06037733.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
 gi|4433393|gb|AAD20723.1| response regulator homolog OmpR [Vibrio cholerae]
 gi|121630852|gb|EAX63234.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|146315454|gb|ABQ19993.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|227014600|gb|ACP10810.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|262021452|gb|EEY40164.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
          Length = 240

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|332880933|ref|ZP_08448603.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681107|gb|EGJ54034.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1366

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++V+DN   + +   +     +  L   +G+EA+ +   +  DVII D+ +  + GLE+ 
Sbjct: 1116 LLVDDNVDLLDVMCRVFSHR-HKVLLAHDGIEAVAVIENNAVDVIISDVMMPNMDGLELC 1174

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K D     IPVI +TA     D     K GC+ Y++KP  L +    ++ ++
Sbjct: 1175 RHLKADINTSHIPVILLTAKNAPEDRIECYKAGCDGYVAKPFELRVLEARVESFL 1229


>gi|288918260|ref|ZP_06412614.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
 gi|288350297|gb|EFC84520.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
          Length = 1065

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
            +K+++V+D+  N+     ++E  G   L   NG E +E L      D+I+MD+ + E+ G
Sbjct: 944  RKILVVDDDVRNVFAISSVLEVYGLTVLHASNGREGIEVLLGNTDVDLILMDVMMPEMDG 1003

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
                  I+E     ++P+IAVTA AM+ D E+    G   +++KP+   + +  I++
Sbjct: 1004 YATMSAIREMPRFADLPIIAVTAKAMQSDREKCLAAGATDFVAKPVDTEMLLARIEQ 1060



 Score = 42.4 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 27/54 (50%)

Query: 28  IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81
                    +A+          +++D+ L + S     ++++ED++L+++PV+A
Sbjct: 815 QVATVTTPEDAVRALAAAPHRCVVLDLTLPDASAFAFLQRLQEDADLRDVPVLA 868


>gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++IV+D    +   +  +ET G+  L    GM  +     H  D++I+DI L +I 
Sbjct: 1   MKELILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPADLVILDIGLPDIG 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + I++      +P+I +TA   + D     + G + YI+KP S       +K  +
Sbjct: 61  GLELCRLIRQ---TSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 209

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 14  NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73
             +L    ++  GY   +  NG EAL+       D +++DI + E+ GL + K+I++   
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVCKEIRK--- 57

Query: 74  LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 58  TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 106


>gi|298528195|ref|ZP_07015599.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511847|gb|EFI35749.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 366

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D+   ++L  D+ E   +  L   NG  A  +A   +PD+++MD+ +  + G 
Sbjct: 5   ARILVVDDDANIVQLIADIFEDE-HEVLFALNGESAGRIADTTRPDLVLMDVVMPGMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E   + KE+ +   IP+I +T+     DE R  K G   YI+KPI+ ++  + ++ ++
Sbjct: 64  ETCARFKENQKTAHIPIIFLTSMDCPDDETRGLKLGAVDYITKPINPAVLKQRVRTHL 121


>gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
 gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
          Length = 243

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 69  TRRIRQEGIA--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124


>gi|91216473|ref|ZP_01253439.1| two-component system, transcriptional regulatory protein
           [Psychroflexus torquis ATCC 700755]
 gi|91185267|gb|EAS71644.1| two-component system, transcriptional regulatory protein
           [Psychroflexus torquis ATCC 700755]
          Length = 240

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  + Y     +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGIVLKDYLSMNSYDVTHAKNGMEGFEKFKKGNYDLCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+  +E  +IP+I +TA AMK D  +  K G + Y++KP    + +  IK  +  
Sbjct: 66  TLAKEIRAKNE--DIPIIFLTAKAMKDDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQR 123


>gi|83956294|ref|ZP_00964735.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83839515|gb|EAP78696.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 239

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D++         +E +G       +  E      +H  D+I++D+ +    GL
Sbjct: 5   AHILVVDDHDEIRNSVSSYLERNGMRTSVAESAAEMDAQRARHSFDLIVLDVMMPGEDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              K+++++      PV+ +TA     D     +GG + Y+SKP +    +  I+  +  
Sbjct: 65  TACKRLRQE---CGTPVLMLTALGEDDDRIEGLEGGADDYLSKPFNPRELLARIRAIMRR 121

Query: 123 A 123
           +
Sbjct: 122 S 122


>gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 248

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-----DVIIMDIQLQ 57
           K+V++VED EL  ++    ++  GY  L   +G  AL + +         D++I+D+ L 
Sbjct: 19  KQVLVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLP 78

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           +++GL++ + ++       IP++ ++A A + D     + G + Y++KP S+   +   +
Sbjct: 79  QVNGLDLCRLLR--YRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCR 136

Query: 118 KYIGE 122
             I  
Sbjct: 137 ALIRR 141


>gi|317475520|ref|ZP_07934783.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908351|gb|EFV30042.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 775

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVEDN    +   + +  + Y  L+  NG EAL + ++ +  +I+ D+ +  + GL++
Sbjct: 531 ILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIVKEQEVGLILTDVMMPVMDGLQL 589

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            KQIK++     IPVI ++A     ++    + G + YI KP S+ +    IK    
Sbjct: 590 CKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFR 646


>gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59
           +KK+++ ED           +  +GY  ++   G  AL+   ++    DV I+D+ +  I
Sbjct: 1   MKKILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMPGI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+++  +    I +I ++A   + D+      G + Y++KP S S  +  +   
Sbjct: 61  DGFQVCKELRNRNGG--IGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSL 118

Query: 120 IGE 122
              
Sbjct: 119 YRR 121


>gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 867

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+ +N      ++E  G+    T NG +ALE+ +    D + MDIQ+  + G+E 
Sbjct: 748 ILVVEDDRVNQLAISRMLEKMGHFPTCTPNGEKALEMLKGSIFDCVFMDIQMPVMDGMEA 807

Query: 65  TKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+ I+    L     IP+IA+TA AM  D E   K G   Y++KP+S     E + + I
Sbjct: 808 TRMIRTAPSLAGVASIPIIALTAHAMPADREAFLKAGMNDYVAKPVSFEQLAEVLSRII 866


>gi|253582051|ref|ZP_04859275.1| response regulator [Fusobacterium varium ATCC 27725]
 gi|251836400|gb|EES64937.1| response regulator [Fusobacterium varium ATCC 27725]
          Length = 221

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 3/112 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IVED +  +K+  D +    +I  +  +G  ALE+  +H PD+I++DI L +++
Sbjct: 1   MTKKILIVEDEKNLIKVIEDTLVEEDFITFKALDGETALEMFYEHNPDLILLDINLPKMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           G E+ + I+ +S    IP+I +TA   + DE +    G + YI+KP SL + 
Sbjct: 61  GWEVCQNIRRES---NIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVL 109


>gi|298491243|ref|YP_003721420.1| GAF sensor-containing adenylate/guanylate cyclase ['Nostoc azollae'
           0708]
 gi|298233161|gb|ADI64297.1| adenylate/guanylate cyclase with GAF sensor(s) ['Nostoc azollae'
           0708]
          Length = 1180

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN        +++  SGY  +  RNG E   +A+  +PD+II D+ +  ++G+E+
Sbjct: 826 VLVVDDNPDMRSYVAEILAHSGYQIITARNGYEGYNIAQGVRPDLIITDLMMPLLTGIEM 885

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+   +++ IP+I +TA   +       + G +AY+ KP +    +  ++  +
Sbjct: 886 IQMIRSQDQVRGIPIILLTAKVDEETRIEGIEHGADAYLGKPFNDRELLAEVRNLL 941



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62
           K+++V+D   N+ L         Y  L+  +G  ALE LA++    VII D ++  +SG 
Sbjct: 10  KILVVDDEPDNLDLLYRSFYRE-YQVLRANSGPAALELLAQEGDIAVIISDQRMPMMSGT 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKKYI 120
           E        ++  +I  I +T +    D       G    Y++KP         +++ +
Sbjct: 69  EFLSL--TATQYPDIIRIILTGYTDVEDLVEAINSGKVFKYVTKPWEAEELKAVVRQAL 125


>gi|156743542|ref|YP_001433671.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM
           13941]
 gi|156234870|gb|ABU59653.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM
           13941]
          Length = 619

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 63/118 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I +D+     + + L+   G+  L  +NG EAL  + ++ PD++++D+ + EI G E
Sbjct: 6   TILIADDDPGARLVLQRLLTREGHRVLMAQNGAEALRQSIEYTPDLLLLDVLMPEIDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +Q++  + L+EIP++ +T+   +         G   +I+KP  ++  +  ++    
Sbjct: 66  VCRQLRNHTRLREIPILLITSLGDQQSRVEGLSAGANGFITKPFDMAELLAHVRTITR 123


>gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
 gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
          Length = 2241

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 69/118 (58%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDNE+N  +  +L+  +G       NG +A+ L   +   +I+MDIQ+  + GL  
Sbjct: 1892 ILLVEDNEINRHVALELLSETGIKVDIALNGQDAVNLVSVNDYHLILMDIQMPIMDGLTA 1951

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            TK+I++    +E+P+IA+TA AM  ++E+    G   +++KPI  +     + +++ +
Sbjct: 1952 TKRIRQLKSKEELPIIAMTAHAMPSEKEKSLIAGMNDHLTKPIEPNYLFNALNQWLPK 2009



 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 64/123 (52%), Gaps = 6/123 (4%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59
            +++V+DN ++ ++   ++        Q  +G +A+E  +         D++IMD ++  +
Sbjct: 1743 ILVVDDNPISQQVISRMLGHLNISCTQANDGSKAVECVQDAASKNTHFDMVIMDWKMPNM 1802

Query: 60   SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G+E ++ IK++ EL   P ++ ++A+     +        + Y+ KP+S S  +ETI +
Sbjct: 1803 DGIEASRIIKQELELDTPPHILMLSAYDRDEVKLLGSPITIDHYLEKPVSQSTLVETIGE 1862

Query: 119  YIG 121
             +G
Sbjct: 1863 VLG 1865


>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1099

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N ++   L+   G+      +G EALE  R    DV++MD+Q+ E+ GLE
Sbjct: 852 RILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDGLE 911

Query: 64  ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I+   S    IP++A+TA AM+GD++     G + YISKPI      E + KY
Sbjct: 912 ATRAIRSLASAAARIPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 968



 Score = 80.9 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 56/123 (45%), Gaps = 6/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58
           +V++V+DN +N  +    +   G       +    +       A     +V ++D Q+  
Sbjct: 705 RVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAAAMGTPWEVAVIDSQMPV 764

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G E+ + ++    L    +I  ++  M  +++  +    +A++ KP+  S  ++TI +
Sbjct: 765 VTGSEMVRMMRAIPMLGGSRIIVTSSQGMPAEQQDGQPA-IDAFLHKPLRQSTLLDTIGR 823

Query: 119 YIG 121
            +G
Sbjct: 824 VLG 826


>gi|332665274|ref|YP_004448062.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334088|gb|AEE51189.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 239

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++    + R  +E   Y     ++G+E LE  ++   D+ I D+ + +  G  
Sbjct: 5   RILLVEDDQNFGDVLRSYLEMHDYDVTLAKDGVEGLESYKKGHYDLCIFDVMMPKKDGFT 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+E    +E+P++ +TA  MK D     + G + YISKP +    +  I   +  +
Sbjct: 65  LAREIREKD--REMPIVFLTAKTMKDDVLEGFRIGADDYISKPFNSEELLFRIHAILKRS 122


>gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 255

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G       +G  A+  AR+ +PDV+++D+ L ++ GL 
Sbjct: 28  RVLVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVMLPDMDGLA 87

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   E+ ++PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 88  VLGRLRR--EIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRS 145


>gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803]
 gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803]
          Length = 242

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   ++  + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFVNANLMREGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIMFLSAKSSDIDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 239

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E      +  +E   Y  +   +G +AL+L  Q KP +I++D  L    G+ 
Sbjct: 7   KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S   ++P+I +TA     D       G + Y++KP  +   +  I+  +  
Sbjct: 67  VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122


>gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 228

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E   K     ++  GY      +G   L+ A     D+I++D+ L E++G
Sbjct: 1   MSRILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E   L+  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVARRVRE---LKNTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227505512|ref|ZP_03935561.1| two component system response regulator [Corynebacterium striatum
           ATCC 6940]
 gi|227197876|gb|EEI77924.1| two component system response regulator [Corynebacterium striatum
           ATCC 6940]
          Length = 231

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++E  G+  +   +G EA+   +++ PD+I++D+ L  ++
Sbjct: 1   MAPKILVVDDDPAISEMLTIVLEAEGFEPIAVTDGNEAVPAFQENDPDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           G++I + I+ +S    +P++ +TA     D     + G + YI+KP     
Sbjct: 61  GVDICRAIRTES---SVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKE 108


>gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 234

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 62/128 (48%), Gaps = 10/128 (7%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-------HKPDVIIMDI 54
           + ++++VED E   +     +   GY  ++  +G  A+EL  +          D++++D+
Sbjct: 1   MTRILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDL 60

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            L  +SG E+ ++I+  S    +PVI +TA   + D+    + G + Y++KP S    + 
Sbjct: 61  MLPRLSGTEVCRRIRRSS---NVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVA 117

Query: 115 TIKKYIGE 122
            +   +  
Sbjct: 118 RVHAVLRR 125


>gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
 gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
          Length = 251

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + IVED+    ++ R  ++ SGY   +   G +  +      P +I++DI L    G
Sbjct: 29  MATIYIVEDDVNIREIERYALKNSGYQVEEFECGADLFKRLESKVPALILLDIMLPNEDG 88

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L+I  +I+ D    ++P+I VTA   + D+ +    G + YISKP  +   +  +K  + 
Sbjct: 89  LDILTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALLR 148

Query: 122 E 122
            
Sbjct: 149 R 149


>gi|189465203|ref|ZP_03013988.1| hypothetical protein BACINT_01548 [Bacteroides intestinalis DSM
            17393]
 gi|189437477|gb|EDV06462.1| hypothetical protein BACINT_01548 [Bacteroides intestinalis DSM
            17393]
          Length = 1293

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++I++DN+  + + +D++    Y  L   NG E LEL +Q  P++II DI + +I G+ 
Sbjct: 1036 TILIIDDNKELLWMLKDILSNE-YAILTAENGEEGLELLKQETPNLIITDIMMPKIDGIT 1094

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +TKQ+K +     IP++ ++A     ++    + G +AYI KP +       IK+ I
Sbjct: 1095 LTKQLKNNKHTAHIPLVILSAKNTTDEKIEGIESGADAYIPKPFNTQYLRTIIKQLI 1151


>gi|115526645|ref|YP_783556.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520592|gb|ABJ08576.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 258

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     L    +  +G       +G E   +   H+ D+IIMD+ L +  GL +
Sbjct: 17  ILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGLSL 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++  S+   +P+I +TA     D     + G + Y++KP +    +  I   +  
Sbjct: 77  CRKVRARSQ---VPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR 131


>gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D           +    Y   +  +G EALE+  + +  +++MD+ +  + G
Sbjct: 1   MYNVLVVDDEREITDAIEVYLRNQNYNVFKAYDGAEALEIFEKEEIHLVLMDVMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T +I+E+S    +P+I ++A +   D+      G + YI+KP +    +  +   + 
Sbjct: 61  TSATIKIRENS---TVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 226

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I++D+E    L    +E  G+ AL+  N +  L L  + + D+II+DI + +++
Sbjct: 1   MKDRILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIMMPQMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G++   +I+E+   + +P+I ++A +   D+      G + Y++KP +    +  +K  I
Sbjct: 61  GIDAAFKIREE---KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|167764902|ref|ZP_02437023.1| hypothetical protein BACSTE_03294 [Bacteroides stercoris ATCC 43183]
 gi|167697571|gb|EDS14150.1| hypothetical protein BACSTE_03294 [Bacteroides stercoris ATCC 43183]
          Length = 1501

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN       R +  +  Y  ++  NGME L  A +  PD+II D+ + E  G+ +T
Sbjct: 1233 LLVEDNSELRIFLRSIFASE-YRIVEAANGMEGLNKALKFLPDIIISDVMMPEKDGIAMT 1291

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D     IP++ +TA +    +    + G + YI+KP S +     +K  + +
Sbjct: 1292 RELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLAQ 1348


>gi|148555150|ref|YP_001262732.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148500340|gb|ABQ68594.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 236

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+     L    ++ +GY+      G E          D+II+DI L   +G+E
Sbjct: 5   TILLVEDDPSLRVLTARALQENGYVVRPAATGPEMWIAFNAEPIDLIILDIMLPGTNGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+++ S   ++P+I ++A   + D     + G + Y++KP      M  ++  +  
Sbjct: 65  LCRQLRQKS---DVPIIFISAKGSETDRVIGLEIGADDYLAKPFGTRELMARVRAVLRR 120


>gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 229

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++ +D    + L    +E  G+  L   +G+ A++  R   PD+ ++D  +  ++GL+
Sbjct: 7   TVLLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTVRDTPPDLALLDWNMPGMTGLD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I +++++      +PVI +TA     D     + G + +I+KP ++   +   K  +  +
Sbjct: 67  ICRRLRDTGVF--LPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRS 124


>gi|159900821|ref|YP_001547068.1| response regulator receiver modulated diguanylate cyclase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893860|gb|ABX06940.1| response regulator receiver modulated diguanylate cyclase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 552

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 3   KKV---MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           K +   +++ED++   ++    +  +GY    T +G E L LA +   D+I++D+ L +I
Sbjct: 236 KTIAELLVIEDDQEIQQVVSQGLSNAGYSITVTTSGEEGLRLAMRQPFDLIMLDLMLPDI 295

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + +Q++E ++    P++ V+A     ++ R  + G + YI+KP   +  +  I   
Sbjct: 296 DGWTVLRQLRERTQTATTPLMLVSALGKPEEKVRGFQLGADDYITKPFDWNELLARISAS 355

Query: 120 IGE 122
           +  
Sbjct: 356 LRR 358



 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED++    +    +  SGY  +   +GM  L+LAR ++P  II+D+ L  ++G ++
Sbjct: 116 VLLIEDSQTYRAVVSARLTQSGYNVVTAPDGMAGLDLARAYQPVAIILDLMLPHLNGEQV 175

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDE 91
              + ED E + IP+I  T    K  E
Sbjct: 176 AFVLGEDPETKHIPIIIYTGLEAKQTE 202


>gi|160879822|ref|YP_001558790.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428488|gb|ABX42051.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D++   +  + ++E   YI     NG+EAL++      D++++DI + ++ G
Sbjct: 1   MIHILVVDDDKNTRRFMKAVLEEEQYIVFTASNGVEALDILDTTHIDLVVLDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+ ++  S   E+P++ V+A  +  D ++  + G + +++KP+     +  IK  + 
Sbjct: 61  YEFTEILR--SVQNELPILMVSAKQLPADRKKGFQVGIDDFMTKPVDAEEMVLRIKALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|71906648|ref|YP_284235.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846269|gb|AAZ45765.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 655

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++VED+ LN ++   +++  G  A    NG +A+E     + D+I+MD+Q+  + GL
Sbjct: 536 KRVLLVEDDALNREIALSMLDDVGLAADIACNGRQAVEAIGNQRYDLILMDMQMPVMDGL 595

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T++I+   +   +P+IA+TA A   D +R R  G   +++KP+   +    + + +
Sbjct: 596 AATREIRAMPQFDSVPIIAMTANAFDDDRQRCRDAGMNDFVAKPVEPYLLFAALLRCL 653


>gi|332527370|ref|ZP_08403426.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus
            JA2]
 gi|332111779|gb|EGJ11759.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus
            JA2]
          Length = 1201

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 67/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++ EDNELN ++  +L+   G +     NG  A+E  R+ + D+++MD+Q+ E+ GL
Sbjct: 944  RRVLLAEDNELNQQVAVELLSELGLVVDVVDNGRTAVERVRERRYDLVLMDMQMPEMDGL 1003

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              T+ I+       +P++A+TA AM  D +R    G + +I+KPI        ++  +  
Sbjct: 1004 SATRAIRALPGAARLPIVAMTANAMVDDVQRCLSAGMDGHIAKPIDPRRLASQLQGCLER 1063


>gi|311898710|dbj|BAJ31118.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1549

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            +V+IV+D+  N+     ++E  G   L   NG E +E+  QH+   +++MDI + E+ G 
Sbjct: 1429 RVLIVDDDIRNVFALTSVLEQYGLTVLYAENGREGIEMLEQHEEVALVLMDIMMPELDGY 1488

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T+QI+       +P+IA+TA AMKGD E+  + G   +I+KP+     +  +++++
Sbjct: 1489 ATTEQIRRMPRFSGLPIIALTAKAMKGDREKSLQAGATDHITKPVETDHLLAVMRQHL 1546


>gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 233

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    +L    +E +GY       G    E AR + PD++I+D+ L  + G
Sbjct: 1   MPNILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + +++DS    +P++ +TA     D+    + G + Y++KP    + +  ++  + 
Sbjct: 61  LQVCRLLRDDSAG--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 1388

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G       +G + +E    +   D+++MD+ + E+ G
Sbjct: 1258 RSVLVVDDDVRNVFAITSILEFYGASVDHAPDGRKGIEKLLANPSTDLVLMDVMMPEMDG 1317

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
                  I+  +   ++P+IAVTA AM  D ++    G   Y++KP+ +   +  ++  +
Sbjct: 1318 YTTMAAIRAMTRFTDLPIIAVTAKAMPDDRQKCLDAGANEYVTKPVDVDELLARVQDVL 1376


>gi|302870116|ref|YP_003838753.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503607|ref|YP_004082494.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572975|gb|ADL49177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410226|gb|ADU08343.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 222

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED E        ++   G+       G  AL    +   D++++D+ L E+SG E+ +Q
Sbjct: 2   VEDEESFSDALSYMLRKEGFEVSVAATGPAALTEFDRTGADIVLLDLMLPEMSGTEVCRQ 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +++ S    +P+I VTA   + D+    + G + Y++KP S    +  I+  +  
Sbjct: 62  LRQRS---HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRR 113


>gi|294805989|ref|ZP_06764856.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294446871|gb|EFG15471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 945

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 700 VLVIDDNADIRSYVRRLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 758

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 759 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 814


>gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586]
 gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586]
          Length = 240

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|253997228|ref|YP_003049292.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983907|gb|ACT48765.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 242

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 1   ML----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M+    KK+++V+D+    +L +  +   G+      +  E   +      D++++D+ L
Sbjct: 1   MMADQNKKILVVDDDVRLRELLQRYLTEQGFTVKTANDAKEMDSILGSDTIDLLVLDLML 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
               GL I ++++ ++ +  +P++ +TA   + D     + G + Y+ KP +    +  I
Sbjct: 61  PGEDGLSICRRMRGNATM--MPIVMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARI 118

Query: 117 KKYIGE 122
              +  
Sbjct: 119 NAVLRR 124


>gi|188992549|ref|YP_001904559.1| Two-component system sensor/response regulator fusionprotein,
            probable [Xanthomonas campestris pv. campestris str.
            B100]
 gi|167734309|emb|CAP52519.1| Two-component system sensor/response regulator fusionprotein,
            probable [Xanthomonas campestris pv. campestris]
          Length = 1046

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 66/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ D+++MDI + E+ G+
Sbjct: 926  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 985

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D E   + G   YI+KPI +   +   + +   
Sbjct: 986  TAMRQIRANRQWQDLPIIALTAKAMADDREHCLQAGANDYIAKPIDVDKLVSLCRVWCSR 1045



 Score =  100 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED     +   DL     +  +   N  EAL LA + +P  I++DI L + SGL +
Sbjct: 660 ILAVEDETRFAQALVDLAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 719

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K +   + IPV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 720 LERLKRNPATRHIPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 771



 Score = 70.2 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+         L+       +      EA++       D ++ D+ L + SG 
Sbjct: 780 RRLLIVEDDSALRANLELLLARDQLEIVAVGTIAEAMDQLGSATFDCMVTDLALPDGSGY 839

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 840 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQRLRRYSKSIIIKGVRSPERLLDEVTLFLH 899

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 900 SVEASLPSDQQRLLREA 916


>gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
 gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
          Length = 219

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED +    L +  +  +GY   Q  +G   L+ A + + ++I++D+ L  I+G+E+
Sbjct: 5   ILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRINGIEV 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++E   +++ PVI +TA     D+    + G + Y++KP ++   +  I   +  
Sbjct: 65  CRRLRE---IKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 119


>gi|148656813|ref|YP_001277018.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1]
 gi|148568923|gb|ABQ91068.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1]
          Length = 969

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D+    ++ + L+  +GY       G EAL       PD++++D+ L  +SG 
Sbjct: 5   AHILVVDDDASVRRMLQILLSNAGYRVSLATTGEEALAYLELVTPDLVLLDVALPGVSGR 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++ ++IK D +   IPVI VT  +    +      G + ++ KP+ L+  +  ++  + 
Sbjct: 65  QVMERIKSDPDRPFIPVILVTGHSDPEAKVAALDAGADDFLVKPVDLAELLARVRAMLR 123


>gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24]
 gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  A++   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++  SE   +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLR--SEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|332876950|ref|ZP_08444703.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332685058|gb|EGJ57902.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 856

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVEDN    +    ++    Y  ++  NG E  E+A+++ PDV++ D+ + ++ G ++
Sbjct: 609 ILIVEDNPDMRRFIHYILSDD-YNIIEAENGEEGFEVAKKYLPDVVVSDVLMPKVDGFDL 667

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K +     IPVI +TA+AM   ++   + G +AYI+KP ++ +    ++K I
Sbjct: 668 CQLLKTNVSTNHIPVILLTAYAMDEQKQVGFESGADAYIAKPFNIRLLRTRVRKLI 723


>gi|322391284|ref|ZP_08064755.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145888|gb|EFX41278.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 232

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + +    +  +GY  L   +G E LEL R+   D+II DI +  + 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++       + P +  TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|237714241|ref|ZP_04544722.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229445733|gb|EEO51524.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1523

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1237 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1295

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S       ++  +
Sbjct: 1296 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLL 1350


>gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIYDAILLDVMMPGMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 66  VIQKIR--DERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123


>gi|56965315|ref|YP_177047.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911559|dbj|BAD66086.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 224

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++IV+D      +  +L++  GY      +GM A++L ++   D+II+DI +  ++G
Sbjct: 1   MEHILIVDDEIQITSIVGELLQEEGYQTTVANDGMNAIKLIKEQDFDLIILDIMMPYVNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + ++E     ++P++ VTA     D+      G + YI+KP +    +  IK ++ 
Sbjct: 61  LDVCRSVRE---FTDVPILFVTARTSMNDQINGLNIGGDDYINKPFTHEQLLARIKTHLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 258

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+I++D++    L +  +      A     G E +   +  +  ++I+DI +  + 
Sbjct: 28  MKHKVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMD 87

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+E      +PV+ +TA +    +    + G + Y++KP  +  F+  +   I
Sbjct: 88  GFQVLEKIRE---TNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLI 144

Query: 121 GE 122
             
Sbjct: 145 RR 146


>gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 235

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D     +L +  +E  GY  +   NG EA EL +    D+ I+DI +  + 
Sbjct: 1   MDMTILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELLQHRTIDLAILDINMPLMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+        PVI ++A     D+      G + +I+KP +    +  ++  +
Sbjct: 61  GFALLKHIRTIHTF---PVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|300932843|ref|ZP_07148099.1| two-component system response regulator MtrA [Corynebacterium
           resistens DSM 45100]
          Length = 224

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   +++  G+  +   +G EA+  AR H PD+I++D+ L  ++
Sbjct: 1   MAPKILVVDDDPAIAEMLTIVLQGEGFETVVVGDGNEAVNAARNHNPDLILLDVMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           G+++ + I+EDS    +P++ +TA     D     + G + Y+ KP     
Sbjct: 61  GVDVCRAIREDS---TVPIVMLTARTDTVDVGLGLESGADDYVHKPFKPKE 108


>gi|298242873|ref|ZP_06966680.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555927|gb|EFH89791.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+   + L R  +E   Y  +   +G +AL+LARQ +P +II+D  L  I 
Sbjct: 1   MQHTILVVDDDRKIVDLIRIYLEKERYQVIIASDGPQALKLARQKQPSLIILDWMLPSID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           GL++ + ++ +    +IP+I +TA + + D+      G + Y++KP S   
Sbjct: 61  GLDVCRILRAE---CDIPIIMLTARSTEDDKLLGLNLGADDYLTKPFSPRE 108


>gi|325105279|ref|YP_004274933.1| histidine kinase [Pedobacter saltans DSM 12145]
 gi|324974127|gb|ADY53111.1| histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1363

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDNE      +D +  S Y  ++  +G E  + A    PD++I D+ +  +SG+++
Sbjct: 1109 VLLVEDNEDFRSYLKDNLTKS-YRVIEACDGKEGWQKALSSHPDIVITDVSMPYLSGMDL 1167

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             K+I+ D   + IPV+ +TA   + DE    + G   Y+SKP +  I    I+
Sbjct: 1168 CKKIRADKRTKHIPVLLLTALTGEEDELSGLETGANDYMSKPFNFDILNIKIR 1220


>gi|308047930|ref|YP_003911496.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307630120|gb|ADN74422.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 240

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+      +  +      +    ++++D+ L    GL 
Sbjct: 7   KVLVVDDDMRLRNLLERYLVEQGFQVRSAADSEQMDRHLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     EIP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQKGN--EIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVLRR 123


>gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
          Length = 222

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+     L+R ++E +G+  +   NG +AL+       ++II D+ + E+ G
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  +   ++PV+ +TA A   D++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 61  YDLVGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
 gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
          Length = 225

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED        +  +E +GY+    R+G+E   LA +    +I++D+ L  I G  
Sbjct: 2   RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGDYALILLDVMLPGIDGFA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+       +PV+ +TA     D     + G + Y+ KP S S  +  I+  +  
Sbjct: 62  VLQAIR---RTSNVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRR 117


>gi|218130333|ref|ZP_03459137.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697]
 gi|217987512|gb|EEC53841.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697]
          Length = 1331

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+       D+   +GY      NG EAL + R+  PD++I DI + E++G 
Sbjct: 1079 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMTGD 1137

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   IK + E+  IPV+ +TA   + +     K G +AYI KP S+ I   T+K  +  
Sbjct: 1138 ELCSIIKGNLEVSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNILAN 1197

Query: 122  EA 123
             A
Sbjct: 1198 RA 1199


>gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
          Length = 238

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++   +     +++ GY   Q  +G+E L++  + + D+ I+D+ +  + G+ 
Sbjct: 7   RILLVEDDKEIREGVEIFLKSQGYAVFQAADGVEGLKVLEEREIDLAIVDVMMPRMDGIT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +T +++E  +    PVI ++A + + D+      G + YI+KP +    M  +   +  
Sbjct: 67  MTAKLREKYDF---PVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLRR 122


>gi|149909235|ref|ZP_01897892.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
 gi|149807759|gb|EDM67705.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
          Length = 230

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED     +L  D +  S    +   +G   LEL      D+I++D+ L    G
Sbjct: 1   MSKVLIVEDEVKIAQLLTDYLVQSNLETVMVHDGNAVLELVHNQYFDIILLDLMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + K+I++      +P+I VTA   + D     + G + YI KP S    +  +K  + 
Sbjct: 61  ITLCKEIRQ---FSAVPIIMVTARVDEIDRLIGLELGADDYICKPFSPREVVARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 229

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           K+++V+D++   +L    I   GY  +   +G EAL   R +    ++I+DI +  ++G+
Sbjct: 2   KILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMPGMNGI 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K++++DS+   IP+I ++A     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  EVVKEVRKDSQ---IPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118


>gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 227

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN     +        G+ A    +G+E  +   +   D+II+DI L  + G+ 
Sbjct: 2   KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+E      +P+I +TA   + D+    + G + Y++KP S    +  IK  I  
Sbjct: 62  ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117


>gi|288924824|ref|ZP_06418761.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
 gi|288338611|gb|EFC76960.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
          Length = 884

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++++DN         L+  + Y   Q  +G E L  A +  PD+II D+ +  + GLE  
Sbjct: 642 LVIDDNPDIRSYVMTLL-GNDYNVEQAADGREGLHKAMRDVPDLIICDVMMPVMDGLEFC 700

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++K D     IPV+ +TA  ++         G +AY++KP S  +    ++  +
Sbjct: 701 RRVKHDVITSHIPVLLLTARTLEEQRVEGYDYGADAYLTKPFSGEVLKSRVRNLL 755


>gi|282895905|ref|ZP_06303945.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
 gi|281199150|gb|EFA74019.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
          Length = 369

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D   N+ L R L+E+ GY      +G  AL+   Q  PD+I++D+ + E+ G 
Sbjct: 10  ARILVVDDIRDNLILVRTLLESEGYAIDSVSDGATALQKTVQSPPDLILLDVMMPEMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+T+ I+  + +  +P++ +TAF  +         G + +I KP   +  +  ++  + 
Sbjct: 70  EVTRTIRSYTNIGYVPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLR 127


>gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 240

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VED+     L R  ++  GY      NG  AL    +   D +I+D+ L  + GL
Sbjct: 5   RKILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQVWDAVILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++I++      +PVI ++A   +       + G + Y+ KP S+   +  +K     
Sbjct: 65  EICRRIRQM--THYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRR 122


>gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4]
          Length = 228

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED      L  + +E +GY  +   +G+  L L + H  D++I DI L ++ G
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++ +    IP++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELAKEIRKTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|254520861|ref|ZP_05132917.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226914610|gb|EEH99811.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++V+D++   +     +   GY  L   +G++AL++AR+    +IIMD+ +  +
Sbjct: 1   MSKLNILVVDDDKEITEAIEIYLINEGYNVLVAYDGVQALKIAREEDIHLIIMDLMMPNL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G   T +++ +   +EIP+I ++A +   D+      G + Y++KP +    +  +   
Sbjct: 61  DGTRATIELRRE---KEIPIIMLSAKSEDSDKILGLNLGADDYLTKPFNPLELIARVNSQ 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|226949656|ref|YP_002804747.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844282|gb|ACO86948.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 235

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+     + ++ +   GY   Q  +G+EA+E  +     ++IMD+ +  + G+E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+E S+   +P+I ++A     D+      G + YI KP S+   +  +K  I  A
Sbjct: 65  AMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121


>gi|104781516|ref|YP_608014.1| two-component response regulator [Pseudomonas entomophila L48]
 gi|95110503|emb|CAK15211.1| putative two-component response regulator [Pseudomonas entomophila
           L48]
          Length = 246

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L  + ++ +G       +G +       +  D+I++DI +    GL 
Sbjct: 6   HILVVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLENNTVDLIVLDIMMPGDDGLL 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + +  PV+ +TA   + D     + G + Y++KP S    +  I   +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123


>gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 230

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            KK++I+ED +   +     +E  GY      NG   +E A     D+I++D+ L E+ G
Sbjct: 3   SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLMLPELDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++++   ++ P+I +TA     D       G + YI+KP ++   +  ++ +  
Sbjct: 63  FEVARRLRKE---KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|15642708|ref|NP_232341.1| osmolarity response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121586637|ref|ZP_01676422.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|153212533|ref|ZP_01948280.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|153802199|ref|ZP_01956785.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|153817423|ref|ZP_01970090.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|153821289|ref|ZP_01973956.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|227082828|ref|YP_002811379.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229507238|ref|ZP_04396743.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229509841|ref|ZP_04399322.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229516962|ref|ZP_04406408.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229527361|ref|ZP_04416753.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229606744|ref|YP_002877392.1| osmolarity response regulator [Vibrio cholerae MJ-1236]
 gi|254225437|ref|ZP_04919048.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|254285903|ref|ZP_04960865.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|254851251|ref|ZP_05240601.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255744328|ref|ZP_05418280.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262158562|ref|ZP_06029677.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262190727|ref|ZP_06048957.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|9657311|gb|AAF95854.1| transcriptional regulator OmpR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549196|gb|EAX59229.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|124116404|gb|EAY35224.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|124122273|gb|EAY41016.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|125622071|gb|EAZ50394.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|126512009|gb|EAZ74603.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|126521221|gb|EAZ78444.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|150424085|gb|EDN16024.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|227010716|gb|ACP06928.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229334993|gb|EEO00478.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229346025|gb|EEO10997.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229353315|gb|EEO18254.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229354743|gb|EEO19664.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229369399|gb|ACQ59822.1| two-component system response regulator OmpR [Vibrio cholerae
           MJ-1236]
 gi|254846956|gb|EET25370.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255737853|gb|EET93246.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262029723|gb|EEY48372.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262033404|gb|EEY51912.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|327485184|gb|AEA79591.1| Two-component system response regulator OmpR [Vibrio cholerae
           LMA3894-4]
          Length = 240

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
 gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
          Length = 221

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      +  D +  SGY      +G E ++  RQ+ PD+I++D+ L    GL+I
Sbjct: 2   ILIVEDEPSLASVVADYLSHSGYQTHIIGDGAEVIDWVRQYNPDLILLDLMLPNRDGLDI 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++      +IP+I  TA   + D     + G + Y+ KP S    +  +K  +  
Sbjct: 62  YRELRS---FSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRR 116


>gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 239

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VED           I   G+ A    +G  A++ A+Q +PD++IMDI L  + GL
Sbjct: 12  RTILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPVMDGL 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I  D   + +PV+ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 72  EATKRIVAD---RPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 128


>gi|307822388|ref|ZP_07652620.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylobacter tundripaludum SV96]
 gi|307736954|gb|EFO07799.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylobacter tundripaludum SV96]
          Length = 352

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L   L++  GY      NG  AL+     KPD+I++DI++ E+SG E+
Sbjct: 13  ILIVDDTLANLQLLSTLLKEEGYKVRPANNGAMALQAVATKKPDLILLDIKMPEMSGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +K++ E + IPV+ ++A     D+ +    G   YI+KP         +  ++
Sbjct: 73  CTALKDNPETKNIPVLFISALNDVTDKIQAFNVGALDYINKPFQFEEVKARVATHL 128


>gi|303236668|ref|ZP_07323249.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN]
 gi|302483172|gb|EFL46186.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN]
          Length = 232

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D     ++ +  +ET GYI     +  EALE  +    ++I++D+ + +ISG  
Sbjct: 7   HILIVDDEVDICEILKFNLETEGYIVDTANSAEEALE-LQLTDYNLILLDVMMGQISGFS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K++KE+ E + IP+I +TA   + D       G + YISKP SL   M  I+  +  
Sbjct: 66  MAKRMKENVETKHIPIIFLTAKDTENDTITGFNLGADDYISKPFSLREVMLRIRAVLNR 124


>gi|284036649|ref|YP_003386579.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283815942|gb|ADB37780.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1343

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +  +++ ED++         + T  +  L+  NG   LE A  + PD+II D+ + E++G
Sbjct: 1088 MPYILLAEDDDDIASFILTTLSTE-WRVLRVNNGKAGLEAAIMNGPDLIISDVLMPELNG 1146

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E+ +Q+K +     IP++ +TA             G + Y++KP  ++     I+  + 
Sbjct: 1147 YELCRQLKSNPITSHIPILLLTAKVSAESRLEGLNAGADDYLAKPFQVNELRARIRNRLA 1206

Query: 122  E 122
            +
Sbjct: 1207 Q 1207


>gi|262193874|ref|YP_003265083.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262077221|gb|ACY13190.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 226

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + K++IVED+E         ++ +GY      +G+EAL+   +  P +I++DI L   
Sbjct: 1   MSQHKILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSE 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G+ +   +++     ++PVI ++A   + D+    + G + YI+KP  L+  M  +   
Sbjct: 61  NGIGVLGTLRQSGN--QVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAV 118

Query: 120 IGE 122
           +  
Sbjct: 119 LRR 121


>gi|195977456|ref|YP_002122700.1| DNA-binding response regulator [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974161|gb|ACG61687.1| DNA-binding response regulator [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 228

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D    + +    ++ +GY      +G +ALEL  + + D+II D+ +  + 
Sbjct: 1   MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIISDVMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++    E  + P + +TA   + D+      G + +ISKP S    +  +K  +
Sbjct: 61  GYDFIGEV--LLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNIL 118

Query: 121 GE 122
             
Sbjct: 119 NR 120


>gi|170749964|ref|YP_001756224.1| response regulator receiver protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656486|gb|ACB25541.1| response regulator receiver protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 126

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED+E         ++  GY  +   +G   +  AR  +PDVI++D+ L  + G
Sbjct: 1   MAKILLVEDHEEIWDFLSRRLKRRGYEVILAHDGEAGVRQARSGQPDVILLDMNLPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + +K  ++ + IP+IA+TA AM GD ++  + GC+ Y  KP+  S  +  I   +G
Sbjct: 61  WSVARTLKSGTDTRAIPIIALTAHAMSGDRDKAIQAGCDDYHPKPVDFSKLLSQISAALG 120

Query: 122 E 122
           E
Sbjct: 121 E 121


>gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
 gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
          Length = 250

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++++D +    L    +   GY   +  +  +A+     +  D+ ++DI + +I+
Sbjct: 22  MQTKILVLDDEKEIADLVTLYLRNEGYEIYEFYDSEDAVAFMEHNTIDLALLDIMMPKIN 81

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI K I+E       PVI +TA     D+ +    G + YI+KP +    +  +K  +
Sbjct: 82  GFEICKMIREKYTF---PVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQL 138

Query: 121 GE 122
             
Sbjct: 139 RR 140


>gi|94495598|ref|ZP_01302178.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94424986|gb|EAT10007.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 240

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   ML---KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M+     +++V+D     +     +  +G+      +  EA      +  D++I+DI + 
Sbjct: 1   MMSDRPHLLLVDDERSIREPLAQYLSRNGFRVTAVDSAAEARVRLNANAIDLVILDIMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
              GL + + I+E     EIPVI +TA + + D     + G + Y+ KP S    +  IK
Sbjct: 61  GEDGLSLCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIK 117

Query: 118 KYIGE 122
                
Sbjct: 118 VIFRR 122


>gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ED++   +L +  + T  Y      +G+E +    +   D+I++D+ +  ++G E
Sbjct: 5   HILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+  S    +PVI +TA   + D+ +    G + YI+KP S  + +  ++  +  +
Sbjct: 65  VAKMIRSQS---NVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 121


>gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1090

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N K+   ++E  GY A    +G E L        DV++MD+Q+ E+ GLE
Sbjct: 969  RILLAEDNLVNQKVAIRMLERLGYTADIAADGQEVLAALESRPYDVVLMDVQMPEMDGLE 1028

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             T+ I+      +  +IA+TA AMKGD E     G   YI+KP+ +      +
Sbjct: 1029 ATRSIRST-ACHQPYIIAMTAHAMKGDREVCLDAGMNDYIAKPVRIEELKAAL 1080


>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 818

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 75/121 (61%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VEDN +N ++ R ++E+ G       NG+ AL+  ++ K D+I MD Q+  + GL
Sbjct: 563 RQVLLVEDNVVNQEVGRGMLESLGCRVKVAENGLAALKEVQRRKYDLIFMDCQMPVLDGL 622

Query: 63  EITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T++I++  E     +P+IA+TA+AMKGD E     G + Y+SKP S     ++I++ +
Sbjct: 623 GATRRIRQREEGSSSRVPIIALTAYAMKGDREACLAAGADDYLSKPFSREQLSKSIERRL 682

Query: 121 G 121
           G
Sbjct: 683 G 683



 Score = 49.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 30/81 (37%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+ ++  D+    +   +L    G       +   AL        D+++MD  +    G
Sbjct: 426 SKRALLASDDPELQETLLELTGGLGMDLDCVGDAPGALCRLLAAPFDLVLMDHCVAGTDG 485

Query: 62  LEITKQIKEDSELQEIPVIAV 82
           L +   I+  +    + ++ +
Sbjct: 486 LALAATIRSIAVGHCVRLVLL 506


>gi|241763559|ref|ZP_04761611.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
 gi|241367290|gb|EER61630.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
          Length = 227

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     +  R  +  +G++A   +NG + L LA Q + D++I+D+ L  + G +
Sbjct: 2   KILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      ++PV+ +TA     D  +  + G + Y+ KP S +  +  ++  +  
Sbjct: 62  VLQSLRNRGL--QMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRR 118


>gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1237

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++V+D+  N+     L++  G      ++G+EA+   ++   D+I+MD+ +  + G 
Sbjct: 1108 RRILLVDDDVRNVYALTALLDEVGLHVSSAKDGIEAIAAYQRDTFDLILMDMAMPNMDGY 1167

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T+ +K+      IP+IA+TA AMKGD E+    G + Y++KPI     +  +++++
Sbjct: 1168 TATRLLKQ-EHGCSIPIIALTAHAMKGDREKCITAGADDYMAKPIKRDELIALLERWL 1224



 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IVED+     +  +     G+ ++  R G++AL L +Q   + +I+DI L ++SG ++ 
Sbjct: 854 LIVEDDANFAAVIAEEAHAHGFSSVHCRTGLQALGLLQQESFNAVILDILLPDLSGWQLF 913

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMET 115
           ++++     +  PV  ++              G       Y+ KPI      + 
Sbjct: 914 RRLRAQPSHRYTPVHIISCVPQP--------VGWNDDGTRYLVKPIGRDELEQV 959



 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 35/81 (43%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED  +  + +R+ +   G++     N  EA       +   +++D+ L +  G  + 
Sbjct: 974  LLVEDVAVEREHYREHLAQLGFVVTACANAEEARAAYANGEFAALVIDLDLPDQDGFALL 1033

Query: 66   KQIKEDSELQEIPVIAVTAFA 86
              + +   LQ + V+  T   
Sbjct: 1034 DSLNQLRPLQGMRVVINTGVD 1054


>gi|121593850|ref|YP_985746.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120605930|gb|ABM41670.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 227

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     +  R  +  +G++A   +NG + L LA Q + D++I+D+ L  + G +
Sbjct: 2   KILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      ++PV+ +TA     D  +  + G + Y+ KP S +  +  ++  +  
Sbjct: 62  VLQSLRNRGL--QMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRR 118


>gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 227

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     +     +  SG+I     NG+  L +A     D+II+D+ L +I+G E
Sbjct: 2   KLLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPDINGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K ++     +  P++ +TA        +  + G + Y+ KP   S  +  ++  +  
Sbjct: 62  IAKSLRNSG--KNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRR 118


>gi|146342541|ref|YP_001207589.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146195347|emb|CAL79372.1| putative two component response transcriptional regulator (OmpR
           family) [Bradyrhizobium sp. ORS278]
          Length = 246

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+     L    +  +        +G E   +   H+ D++I+D+ L    GL 
Sbjct: 7   HILVVEDDRETRTLIAKYLRNNACNVTTATDGREMTRIMGDHRIDLLILDVMLPGEDGLT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +S+   +P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 67  LCRKLRAESQ---VPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRR 122


>gi|120405713|ref|YP_955542.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958531|gb|ABM15536.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 230

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++++D    ++  R  +   GY      +G EAL +A  HKPDV+++D+ L +++G+E
Sbjct: 7   RVLVIDDEPQILRALRINLSVRGYEVHTAASGAEALRMAADHKPDVVVLDLGLPDMTGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++        PVI ++A +   D+      G + Y++KP  +  F+  ++  +  
Sbjct: 67  VLAGLR---GWLSAPVIVLSARSDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRR 122


>gi|148543300|ref|YP_001270670.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152710|ref|YP_001841051.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227364368|ref|ZP_03848461.1| two component response regulator [Lactobacillus reuteri MM2-3]
 gi|325683567|ref|ZP_08163083.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530334|gb|ABQ82333.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224054|dbj|BAG24571.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227070681|gb|EEI09011.1| two component response regulator [Lactobacillus reuteri MM2-3]
 gi|324977917|gb|EGC14868.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 221

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +    +    +  SGY      NG EA+E A+++  DVII+DI +   SGLE
Sbjct: 2   RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K+I+         ++ +TA   + D+      G + Y+SKP SL   +  ++     
Sbjct: 62  ALKEIRATGN--RTYIMMLTAMGEEDDKVTGLDAGADDYLSKPFSLKELLARLRSRQRR 118


>gi|323703413|ref|ZP_08115061.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum nigrificans DSM 574]
 gi|323531594|gb|EGB21485.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum nigrificans DSM 574]
          Length = 454

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++++D E         +   GY  L    G + LEL R   P ++I+D+++ E+ 
Sbjct: 1   MTRKILVIDDEEHMCWALEKGLRQEGYQVLTATRGKQGLELIRNEVPSLVILDLKMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+   ++    + ++PVI +TA           K G   YI+KP  L      +K+ +
Sbjct: 61  GLEVL--VRAKEMMPKLPVIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKLVVKQAL 118


>gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  I G
Sbjct: 4   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  ++I +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 64  FQVCKSIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|254429063|ref|ZP_05042770.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195232|gb|EDX90191.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 713

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++M+VEDNE+N  + R ++   G+      NG  AL L  Q   D+++MD  + E+ G E
Sbjct: 583 RLMLVEDNEVNQLVTRGMLSKLGFQVKTVSNGETALALLEQEPFDLVLMDCMMPEMDGFE 642

Query: 64  ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +T++++E  + +     PV+AVTA   +G + R    G + +++KP+ L      +++++
Sbjct: 643 VTRRLREIEQDKASLRTPVVAVTANTAEGVQARCLAAGMDDFLAKPVHLDALETVLRRWL 702

Query: 121 GE 122
            E
Sbjct: 703 PE 704


>gi|168699248|ref|ZP_02731525.1| response regulator receiver domain protein (CheY-like) [Gemmata
           obscuriglobus UQM 2246]
          Length = 406

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VEDN+ N  +    + + G+  ++  NG EAL+  R+   D+++ DI + E+ G 
Sbjct: 161 KRILVVEDNDANRVMLCRRLGSRGFQTVEAANGREALDAVRRAPFDLVLCDIMMPEVDGY 220

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +Q+K D  LQ +PVI V+A     +  R  + G E Y+ KP    +    +   +
Sbjct: 221 EVLRQLKADQNLQSLPVIMVSAIDETAEVVRCIEMGAEDYLHKPYDPVLLHARVNACL 278



 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 71/121 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++VED ++N ++FR  +E  GY  L    G+ A+ LAR  +PDVI+MD+ L +I G
Sbjct: 1   MPHVLLVEDEQVNREMFRRRLERKGYTVLPADTGLGAVALARSERPDVILMDLGLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+++K D     IP+I ++A A    +++    GC+ + +KP++       + +++ 
Sbjct: 61  WEATRRLKADPATAPIPIIVLSAHATFDAKDKAFAAGCQDFETKPVNWDALYRKLDEWLA 120

Query: 122 E 122
           +
Sbjct: 121 K 121


>gi|241205712|ref|YP_002976808.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859602|gb|ACS57269.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 233

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D+     L    +  +G+      +G EA         D+IIMD+ +   SG+
Sbjct: 12  AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++T+ ++    ++ +P+I +TA A  G+     + G + Y+SKP      +  I   +  
Sbjct: 72  DVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|149178311|ref|ZP_01856903.1| putative response regulator [Planctomyces maris DSM 8797]
 gi|148842837|gb|EDL57208.1| putative response regulator [Planctomyces maris DSM 8797]
          Length = 157

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 66/118 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I +DN  N +L    +   GY      +G E LE   +  PD+I++DI + ++SG E
Sbjct: 11  KILIADDNHQNCELLDAYLLDEGYETFMAYDGKETLEKVAEIDPDLILLDIMMPKLSGYE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  Q+K+  E ++IP++ +TA    GD E+  + GC+ +++KP++       ++  + 
Sbjct: 71  VCAQLKQSDETKDIPILVITALNEMGDIEKSVQAGCDDFLTKPVNRIELTTRVRSLLR 128


>gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
 gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
          Length = 295

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 7/127 (5%)

Query: 2   LKK-----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           +K      V++V+D+  ++ +    + + GY AL   NG++AL +A +  PDV+++D  +
Sbjct: 1   MKHNNSDVVLVVDDSPESLGMLNVALNSQGYTALVALNGLQALAIAEKVPPDVVLLDAMM 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            ++ G E  +++K    L   P+I +T      D  +  + G   Y++KPIS    +  I
Sbjct: 61  PQMDGFETCRRLK--LILPNTPIIFMTGLTDVEDVVKGFEAGGVDYVTKPISPDEVIARI 118

Query: 117 KKYIGEA 123
           K++I  A
Sbjct: 119 KRHIETA 125


>gi|312887562|ref|ZP_07747156.1| two component transcriptional regulator, AraC family
            [Mucilaginibacter paludis DSM 18603]
 gi|311299932|gb|EFQ77007.1| two component transcriptional regulator, AraC family
            [Mucilaginibacter paludis DSM 18603]
          Length = 1363

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IVEDNE      RD ++   Y  ++  NG+E  + A    P++I+ D+ +  + GLE+
Sbjct: 1105 ILIVEDNEDFRFFMRDNLQQH-YKVIEATNGLEGWQKALACHPELIVSDVMMPYLDGLEL 1163

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++K D     IPVI +TA + +  +    K G   Y++KP S  I    IK  +
Sbjct: 1164 SRKLKTDKRTNHIPVILLTASSGEAKQLECLKSGANDYLNKPFSFEILNVRIKNLL 1219


>gi|300865282|ref|ZP_07110096.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336755|emb|CBN55246.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 663

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++    +  SGY      NG  A+  AR   PD+I++DI++ + +G E+
Sbjct: 13  ILIVDDTPENLQVLSATLSESGYKVRGVINGKMAVRAARSAPPDLILLDIRMPDTNGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K DS+  +IPVI ++A     D+ +  + G E YI+KP  +   +  ++  +
Sbjct: 73  CEELKADSQTSKIPVIFISALDEVLDKVKAFQVGGEDYITKPFQVEEVVARVEHQL 128



 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 15/135 (11%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++V+D + N  L   L++  G+  L+  NG +AL L    +P +I++D ++  I G
Sbjct: 427 SYRILVVDDTQENRLLLVKLLQPIGFEVLEAENGEQALTLWDSWQPHLILLDTRMPVIDG 486

Query: 62  LEITKQIKEDSELQ---------------EIPVIAVTAFAMKGDEERIRKGGCEAYISKP 106
           +E+  QI+     +                  +IA+TA A +   + I   GC+ ++ KP
Sbjct: 487 MEVAIQIRAKEREKQEKSLINHQSPINSYHTVIIALTASAFEERRDEIIAAGCDDFVRKP 546

Query: 107 ISLSIFMETIKKYIG 121
               +  E + +++G
Sbjct: 547 FQEQVIFEKMTEFLG 561


>gi|296133268|ref|YP_003640515.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola sp. JR]
 gi|296031846|gb|ADG82614.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola potens JR]
          Length = 301

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVEDN L     +  +ET GY      N  +A     +  PD+II+DI L +  G E
Sbjct: 7   HILIVEDNPLTANQLKSFLETVGYKVSLCLNAEQARNFLTEETPDLIILDIILPDTDGYE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+E++ L+ IP+I V+A     D+    + G + YI+KP ++   +  I+  +  
Sbjct: 67  LCRWIREETRLRLIPIIFVSAKDGLDDKVVGLQAGGDDYITKPFAMEELLARIEVILQR 125


>gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 223

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++  ED     ++    ++  G+     R+G E L+       DV+I+DI +  I GL 
Sbjct: 2   RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMPGIDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PV+ +TA     D       G + Y++KP   +     I+  +  
Sbjct: 62  VLRTLRSRGNT--VPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118


>gi|293375525|ref|ZP_06621802.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325840212|ref|ZP_08166979.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
 gi|292645865|gb|EFF63898.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325490360|gb|EGC92685.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
          Length = 222

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +  +  ++  GY      +G  AL L  Q+  D+I++D  L ++SG E
Sbjct: 2   RILMVDDEVKICEFVQACLDNEGYQTEVAHDGKTALSLFHQYTYDLILLDRMLPDVSGEE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I KQI++ S   +IP+I +TA     D     + GC+ YI KP ++   +  IK  +  
Sbjct: 62  ICKQIRQQS---DIPIIMLTAKIEDEDRIEGFQLGCDDYICKPFNIMELLLRIKAILKR 117


>gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 242

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     +L  D ++ + Y      NG + +E  RQH P +I++D+ L    
Sbjct: 9   MASPILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVIEWVRQHSPSLILLDLMLPGCD 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I + I++      +P+I VTA + + D     + G + YI KP S    +  ++  +
Sbjct: 69  GLTICRTIRQ---FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|239502568|ref|ZP_04661878.1| AdeR [Acinetobacter baumannii AB900]
          Length = 242

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED      +    ++  G   ++  NG +A+E+      D+I++DI+L E++G 
Sbjct: 13  KQILVVEDEYDIGDIIEQYLKREGMRVIRAMNGKQAIEIHASQPIDLILLDIKLPELNGW 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+  +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 73  EVLSKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 268

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     ++    +   G+   Q   G++A++ AR+  PDV+++D+ L E+ GLE
Sbjct: 42  RVLVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157


>gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
 gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
          Length = 241

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
 gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
          Length = 732

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN  N  + R +IE  G       NG  A+E   Q  PD+++MD+ + E++G E
Sbjct: 577 RILVAEDNRTNQLVIRKMIEKHGAEVEICANGQAAVESFAQSPPDLVLMDVSMPEMNGYE 636

Query: 64  ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+E   L +   +P++A+TA A   D E+  + G   ++SKP+  ++ ++ I++Y+
Sbjct: 637 ATRRIREGETLAQQPPVPILALTANATPKDREKCLQSGMTDFLSKPVRKAVVLQKIEEYL 696



 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
           +V++V+D E+N  + +  + +     +   NG  ALE   ++   D+ I+D Q+  + G 
Sbjct: 435 RVLVVDDLEVNRLILQKTLTSWQAQVVLAENGPHALECLEKEEPFDLAILDFQMPGMDGN 494

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + ++ +E    Q++PV+ +++     D  + +  G  A + KP+  +   + +
Sbjct: 495 MLLERFREHPSAQKMPVVLLSSVDAGLDSGKTKGLGFAASLLKPMRAARLKQVL 548


>gi|187921731|ref|YP_001890763.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187720169|gb|ACD21392.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 1646

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 58/113 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN    +    ++  +G+      +G  ALE AR   PD+++ D+ +  + G  
Sbjct: 659 RLLVVDDNADLREYMSRILRAAGHDVRLASDGQAALEAARAEAPDLVLSDVMMPRLDGFG 718

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + + ++ D  L++ PV+ ++A A +       + G + Y++KP S    +  +
Sbjct: 719 LLRALRADPHLRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 771



 Score = 72.1 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61
             ++ VED+E       +++   GY  L+ ++   AL +     P D++  D+ +   +  
Sbjct: 1376 TILAVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDMLFTDVVMPGPLRS 1435

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMETIKKYI 120
             E+ ++ +E   L  I V+  + +             G    +SKP +       ++  +
Sbjct: 1436 TELARKARE--RLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKVRYVL 1492



 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VED+EL      +L+ T  +  L+     +A ++  +H   V++ D+ L   SG++
Sbjct: 1531 RILLVEDDELIRVSTAELLRTFDFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1590

Query: 64   I-TKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +     +E  +L+   VI +T + +     +R         + KP      ++ +K  + 
Sbjct: 1591 LALDVCRERPDLR---VIFLTGYDLVLTPAQRAVLPHAM-LMRKPYDPLDLIDALKTPLR 1646


>gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 230

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     ++  D +   G+      NG EA +  R   PD +I+D+ L    GL I
Sbjct: 7   ILIVEDEPKIAQILVDFLTIEGFATQVVHNGDEAEDAIRTKTPDCVILDLMLPGKDGLSI 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K +++     ++P+I +TA   + D       G + Y+ KP S    +  ++  +  A
Sbjct: 67  CKDVRK---FSQVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILRRA 122


>gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 236

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+ VED+++  +  +  +E  G++     +G+  LE  R  +PD+ ++D+ +  + G+ 
Sbjct: 5   HVLFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMVPGLDGVS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S    +PVI ++A A   D     + G + Y++KP   ++ +  I+  +  
Sbjct: 65  LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120


>gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED        +  ++  G+      +G + L LARQ   DV+++DI L  +SG  
Sbjct: 2   RVLVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPRLSGYN 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + KQ++ +     +P++ ++A   + D       G + Y++KP S  + +  ++  +  
Sbjct: 62  VCKQLRAEENW--VPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRR 118


>gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V++VED     ++ +  +E  GY      +G    E+A   + +++++D+ L E++
Sbjct: 1   MNERVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPELN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++      +PVI +TA     D+    + G   YI+KP ++   +  ++  +
Sbjct: 61  GIEVLRRLRQ--AGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNIL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
 gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED   + +  R  +  +G++    R+G E L+LA Q   +++I+D+ L  + G +
Sbjct: 2   KILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++   +++ PV+ +TA     D  +  + G + Y+ KP S    +  ++  +  
Sbjct: 62  LLRELRK---VRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRR 117


>gi|298387999|ref|ZP_06997547.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298259265|gb|EFI02141.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 1377

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +I+ED++   +    L     Y  ++  NG E + +A ++ P +II DI +    G E +
Sbjct: 1127 LIIEDHDEMREYLCSLF-KEDYNVIEAGNGEEGVAMADKYIPKLIISDIMMPVKDGFECS 1185

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E+     IPVI +TA A   D  +  + G + YI KP +  +  E +K  I +
Sbjct: 1186 REIRENKRTFHIPVIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQ 1242


>gi|262408382|ref|ZP_06084929.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262353934|gb|EEZ03027.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1524

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1238 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1296

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S       ++  +
Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLL 1351


>gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603]
          Length = 221

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ED++   +L +  + T  Y      +G+E +    +   D+I++D+ +  ++G E
Sbjct: 5   HILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+  S    +P+I +TA   + D+ +    G + YI+KP S  + +  ++  +  +
Sbjct: 65  VAKMIRSQS---NVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 121


>gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 232

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED           +   G+     R+G+ A++ A + +PD +++D+ L  I G
Sbjct: 1   MSTILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+ D   + +PV+ +TA   + D       G + Y++KP S+   +  +K  + 
Sbjct: 61  LEVCRRIQAD---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|212692265|ref|ZP_03300393.1| hypothetical protein BACDOR_01761 [Bacteroides dorei DSM 17855]
 gi|212665142|gb|EEB25714.1| hypothetical protein BACDOR_01761 [Bacteroides dorei DSM 17855]
          Length = 1357

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++EDNE        L     Y   +  NG E +++A    PD+II DI +    G    
Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGVDVAISKIPDLIISDIMMPVKDGFTCC 1166

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E      IP++ +TA A   D  +  K G + Y+ KP +  +    ++  I
Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221


>gi|162453349|ref|YP_001615716.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163931|emb|CAN95236.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
          Length = 235

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++++ED     K+    +  +G+  L    G E + LA   +PD++++D+ L +I G
Sbjct: 1   MARILVIEDEPALQKVLDYNLRQAGHEVLLAGQGGEGVRLAVDQRPDLVLLDLMLPDIPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +++    Q IPV+ V+A   + D     + G   Y+ KP S+   +  ++  + 
Sbjct: 61  TEVCRALQQSDGTQRIPVMIVSARGDEVDRIVGFELGAVDYVVKPFSVRELVLRVQAVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|149198961|ref|ZP_01876002.1| serine/threonine kinase [Lentisphaera araneosa HTCC2155]
 gi|149137956|gb|EDM26368.1| serine/threonine kinase [Lentisphaera araneosa HTCC2155]
          Length = 704

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 61/117 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN  N+++    +       L  + G++AL    + KP +I++DI + +  G E+
Sbjct: 9   ILIVDDNANNLQVLFKTLAVLDAKVLVAKGGLQALVTVEKRKPSLILLDIMMPDKDGYEV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             ++KE+ E ++IP+I ++A     D+ +    G   +I+KP      +  +K  + 
Sbjct: 69  CAELKENEETKDIPIIFLSALGQVQDKVKGLDLGAVDFITKPFQAEEVVSRVKTQLR 125


>gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 235

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    ++L    ++  G+  +   +G EAL++AR+ +PD  I+D+ +  + G E
Sbjct: 10  RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGFE 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++   E  + PV+ +TA             G + Y++KP SL   +  ++  +  
Sbjct: 70  LLTKLR--GEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126


>gi|110633701|ref|YP_673909.1| response regulator PleD [Mesorhizobium sp. BNC1]
 gi|110284685|gb|ABG62744.1| response regulator receiver modulated diguanylate cyclase
           [Chelativorans sp. BNC1]
          Length = 457

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D   N++L    +    Y  +  R+G +A+++    K DV+++D+ +  + 
Sbjct: 1   MTARILVVDDVPANLRLLEARLLAEYYDVVTARSGPDAIDICESSKIDVVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K D     IPVI +TA     D  R  + G + +++KP++    +  +K   
Sbjct: 61  GFEVCRRLKADPLTTHIPVIMITALDQPSDRVRGLEAGADDFLTKPVNDLQLLTRVKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++++++   +    +++   +      +  E L  A +   + II+         L +
Sbjct: 158 VLLIDEDKAAGRQLARMLQDH-FALDAVDDPQEGLVRAAERSYECIIVSSSFVAYDPLRL 216

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q++     + +P+I       +    R  +     Y+ +P+     +  ++  I  
Sbjct: 217 CSQLRAMDRTRLVPIILFAGEGDETVIIRGLELAVNDYVLRPVERQELIARLRTQIRR 274


>gi|325859665|ref|ZP_08172795.1| response regulator receiver domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|325482591|gb|EGC85594.1| response regulator receiver domain protein [Prevotella denticola
           CRIS 18C-A]
          Length = 716

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN+      +  ++ + Y  L   +G + L+LA+++ PD+I+ D+ +  + GLE
Sbjct: 467 TVLVVDDNKDIRAYLQLTLQDT-YRVLLASDGRQGLQLAKENIPDLIVSDVMMPVMDGLE 525

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++IK+++    IPV+ +TA + +         G +AYI+KP S  +    I   +
Sbjct: 526 LCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKVRIGNLL 582


>gi|298483251|ref|ZP_07001430.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298270568|gb|EFI12150.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1314

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++V+DN       +   E  GY    +   +G+EAL+L R H PD+I+ D+ +  ++G
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++ K IKED  +  IPVI +TA   +  +    K G + Y+SKP  + + ME I+  +
Sbjct: 1116 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174


>gi|295085850|emb|CBK67373.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1314

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++V+DN       +   E  GY    +   +G+EAL+L R H PD+I+ D+ +  ++G
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++ K IKED  +  IPVI +TA   +  +    K G + Y+SKP  + + ME I+  +
Sbjct: 1116 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174


>gi|293369312|ref|ZP_06615899.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|292635642|gb|EFF54147.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
          Length = 1139

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +++V+DN       +   E  GY    +   +G+EAL+L R H PD+I+ D+ +  ++G
Sbjct: 883 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 940

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ K IKED  +  IPVI +TA   +  +    K G + Y+SKP  + + ME I+  +
Sbjct: 941 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 999


>gi|255020263|ref|ZP_05292332.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970405|gb|EET27898.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
          Length = 240

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++V+D+     +    +E   +      +      +  +   D++++D+ +   
Sbjct: 1   MAKARILLVDDDPRLRSILLRYLEMQDFSVCGVASTALMDRMLEREFFDLLLLDVMMPGE 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E   +++      ++P+I +TA     D  +    G + Y++KP      +  I+  
Sbjct: 61  DGFEACARLRRQE--PQLPIIMLTARGDLDDRVQGLSLGADDYLAKPFEPEELVARIRAV 118

Query: 120 IGEA 123
           +  +
Sbjct: 119 LRRS 122


>gi|237722073|ref|ZP_04552554.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448942|gb|EEO54733.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1314

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++V+DN       +   E  GY    +   +G+EAL+L R H PD+I+ D+ +  ++G
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++ K IKED  +  IPVI +TA   +  +    K G + Y+SKP  + + ME I+  +
Sbjct: 1116 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174


>gi|237716960|ref|ZP_04547441.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405729|ref|ZP_06082279.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294644469|ref|ZP_06722230.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294806819|ref|ZP_06765645.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|229442943|gb|EEO48734.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262356604|gb|EEZ05694.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|292640191|gb|EFF58448.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294445989|gb|EFG14630.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1314

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++V+DN       +   E  GY    +   +G+EAL+L R H PD+I+ D+ +  ++G
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++ K IKED  +  IPVI +TA   +  +    K G + Y+SKP  + + ME I+  +
Sbjct: 1116 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174


>gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
 gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
          Length = 245

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + K+++V+D++  +   +  +E  GY  +   NG+EAL++  +    ++I+DI +  +
Sbjct: 11  MAQPKILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGM 70

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL  T +I+E    + IP+I ++A   + D+      G + Y+SKP      +  +K  
Sbjct: 71  DGLSATMKIRES---KNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQ 127

Query: 120 IGE 122
           +  
Sbjct: 128 LRR 130


>gi|126700337|ref|YP_001089234.1| two-component response regulator [Clostridium difficile 630]
 gi|254976316|ref|ZP_05272788.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093701|ref|ZP_05323179.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101892|ref|ZP_05330869.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307761|ref|ZP_05351932.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315453|ref|ZP_05357036.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518116|ref|ZP_05385792.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651233|ref|ZP_05398135.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684297|ref|YP_003215582.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687956|ref|YP_003219090.1| two-component response regulator [Clostridium difficile R20291]
 gi|115251774|emb|CAJ69609.1| Two-component response regulator [Clostridium difficile]
 gi|260210460|emb|CBA64917.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213973|emb|CBE06070.1| two-component response regulator [Clostridium difficile R20291]
          Length = 234

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++ +DN    ++   L+   GY  +   NG EA+ L      D+II+D+ +   +G 
Sbjct: 7   KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDS-TIDLIILDVVMPVKTGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +I+E +     P++ +TA     D+      G + Y+SKP S S  +  +K  +  
Sbjct: 66  VACNEIREKTTA---PILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRR 122


>gi|326777882|ref|ZP_08237147.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658215|gb|EGE43061.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 250

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+    +  +  +E  GY      +G+  LE  R    D++I+D+ L E+ G+ +
Sbjct: 21  VLVVEDDATIRRAVQLALERYGYRVDVAADGLGGLEAFRAGAHDLLILDVMLPELDGIGL 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+E+S    +PV+ ++A     D     + G + Y+ KP+   + +  I+  +  A
Sbjct: 81  CRRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRA 136


>gi|291619550|ref|YP_003522292.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291154580|gb|ADD79164.1| BaeR [Pantoea ananatis LMG 20103]
          Length = 233

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+V+I+ED+     +    ++  GY  +   NGM  LE   + +PD+I++D+ L  ++G
Sbjct: 6   TKRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEHVGRWQPDLILLDVMLPVMNG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   I+      + PVI VTA     D     + G + Y+ KP      +  ++  + 
Sbjct: 66  TEVLAAIRRSG---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 122

Query: 122 EA 123
            A
Sbjct: 123 RA 124


>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
            DSM 771]
 gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
            DSM 771]
          Length = 1267

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 67/117 (57%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN +N  +  +++E+ G       NG EA+E  R    D+++MD+Q+  + G+E
Sbjct: 905  HILLVEDNLINQMVAVEILESVGISVDVAENGREAVEKVRAGNYDLVLMDLQMPVMDGME 964

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ ++++   +++P+IA+TA A+ G  E+    G   +ISKP      +  + K +
Sbjct: 965  ATRILRDEPLYRDLPIIALTAHAISGFREQCIGLGMNDFISKPFLPEDMLLILSKCL 1021



 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 3/116 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEISG 61
           +V+IV+DNE + ++    +    +      +G EA++L        D++++D ++  + G
Sbjct: 760 RVLIVDDNEASQEILASYLVDLNFDVTVLSSGQEAIDLLVKEGEAFDILVIDWKMPGLDG 819

Query: 62  LEITKQIKEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           +E  + IKE  +L++IP+I + +A+ +        + G +A+++KP + S  M+ I
Sbjct: 820 VETIRLIKEKMKLEKIPIIIMASAYDLDELRNVFSELGIKAFLNKPHTPSQLMDAI 875


>gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
 gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
          Length = 1378

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 53/115 (46%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++ +DN    +    L+  +GY      +G +AL   R    D+++ D+ +  + GL 
Sbjct: 630 HVLVADDNADMREYLIRLLLGAGYQVSAVDDGRQALGAIRTKAFDLVVSDVMMPHLDGLA 689

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +   ++ D     +PV+ ++A A +       + G + Y+ KP + +  +  ++ 
Sbjct: 690 LVAALRADPRTASVPVLLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRA 744


>gi|187920088|ref|YP_001889119.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN]
 gi|187718526|gb|ACD19749.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN]
          Length = 1195

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + +++ ED+  N+     ++E  G      RNG EALE         +I+MDI + E+ G
Sbjct: 1074 RTILLAEDDVRNIFALSHVLEPLGAKLQIARNGREALEALENGPEVHLILMDIMMPEMDG 1133

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            L    +I+ D     +P+IA+TA AM  D  R  + G + Y+SKPI +   +   + ++ 
Sbjct: 1134 LTAMGEIRRDPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLR 1193

Query: 122  E 122
            +
Sbjct: 1194 Q 1194



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    ++ RDL     +  +   +    L L R  +P  +++D+ L + SGL +
Sbjct: 808 IIAVEDDAAFAEILRDLTHELDFDFVHASSAASGLALVRDMRPAAVLLDVGLPDRSGLTV 867

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            + +K D   + IP+  V+A       ++    G   Y  KP + S     I++ 
Sbjct: 868 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 919



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 47/94 (50%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V+++ED+    +  R L+++     +      EALE   +   D ++ D+ L + +G 
Sbjct: 928  KRVLVIEDDAPMRESIRALLQSENTEIVAVATLTEALEYLGKFSFDCVVTDLALPDGTGY 987

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            ++ +++  ++    +PVI  T   +  +EE   +
Sbjct: 988  DLLERLAANTAHAALPVIVYTGRMLSDEEEHRLR 1021


>gi|46908593|ref|YP_014982.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093002|ref|ZP_00230782.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224969|ref|YP_002759076.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254991991|ref|ZP_05274181.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
 gi|46881865|gb|AAT05159.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018656|gb|EAL09409.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877431|emb|CAS06145.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465285|gb|EGF36542.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328471342|gb|EGF42239.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332312851|gb|EGJ25946.1| Two-component response regulator [Listeria monocytogenes str. Scott
           A]
          Length = 231

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + E++
Sbjct: 1   MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++++  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 61  GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|313682907|ref|YP_004060645.1| pas/pac sensor protein [Sulfuricurvum kujiense DSM 16994]
 gi|313155767|gb|ADR34445.1| putative PAS/PAC sensor protein [Sulfuricurvum kujiense DSM 16994]
          Length = 467

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++V+D   N+++  ++++  +    +   NG +AL+   +++ D+I++D+ +  + GL
Sbjct: 8   TILVVDDEPRNIQVVSNVLKEINECHIIYAVNGEQALQRVEKNEIDLILLDMMMPLLDGL 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  K++K DS    IP++ +TA   +    +  + G   YISKP      +  +  ++
Sbjct: 68  ETCKRLKADSRYSSIPIVFLTAKNDEESLIKGFEAGAVDYISKPFLRRELIARVTTHL 125


>gi|297192480|ref|ZP_06909878.1| transcriptional regulatory protein afsQ1 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151373|gb|EFH31120.1| transcriptional regulatory protein afsQ1 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 228

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 8   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 67

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 68  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121


>gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
 gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
          Length = 226

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I++D+     L    +E  G+ A+   +G   ++ A     D II+D+ L +++
Sbjct: 1   MNGNILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQPFDAIILDVMLPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K I+E  E    PV+ +TA     D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GFEVLKAIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 233

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IV+D +   KL    ++  GY  LQ  +G E LE+ ++    +I++DI + +I
Sbjct: 1   MSKGTILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+ +  +++E   + E+P+I ++A     D+      G + Y++KP +    +  IK  
Sbjct: 61  DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|111221291|ref|YP_712085.1| putative transcriptional regulator [Frankia alni ACN14a]
 gi|111148823|emb|CAJ60501.1| Putative Transcriptional regulatory protein [Frankia alni ACN14a]
          Length = 250

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    +     +   GY      +G +AL+   + +PD++++D+ +  I GLE
Sbjct: 9   RVLVVDDDAAVRESLERSLRFEGYEVTTAVDGADALDAVCRDQPDIVVLDVMMPRIDGLE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
             +Q++   +  ++PV+ +TA     D       G + Y+ KP +L    
Sbjct: 69  TCRQLRARGD--DVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELF 116


>gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 233

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D      L    +  +G+      NG +A+    + +PD+I++D+ L +++G  
Sbjct: 9   RILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVMLPDMNGFG 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK+++        P++ +TA     D+      G + Y++KP SL   +  IK  +  
Sbjct: 69  VTKRLRGAGYTA--PILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRR 125


>gi|16330585|ref|NP_441313.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653076|dbj|BAA17993.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 366

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
             V+IV+D+   + +   L++   Y       G +AL +A    P D+I++DI + EI G
Sbjct: 11  ATVLIVDDSPDTLTMLSGLLKDH-YRIKIASKGEQALAIAASMPPPDLILLDIMMPEIDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+  ++K D++ + IPVI +TA     DE+     G   YI+KPIS  I +  ++ ++
Sbjct: 70  YEVCTKLKADTQTKNIPVIFLTAKTDVADEQHGFSLGAVDYITKPISPPILLARVRTHL 128


>gi|16804460|ref|NP_465945.1| hypothetical protein lmo2422 [Listeria monocytogenes EGD-e]
 gi|47095903|ref|ZP_00233507.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217963478|ref|YP_002349156.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|224500135|ref|ZP_03668484.1| regulatory protein VanR [Listeria monocytogenes Finland 1988]
 gi|254827997|ref|ZP_05232684.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254831155|ref|ZP_05235810.1| regulatory protein VanR [Listeria monocytogenes 10403S]
 gi|254900440|ref|ZP_05260364.1| regulatory protein VanR [Listeria monocytogenes J0161]
 gi|254913321|ref|ZP_05263333.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937702|ref|ZP_05269399.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284802860|ref|YP_003414725.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284996001|ref|YP_003417769.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|16411910|emb|CAD00500.1| lmo2422 [Listeria monocytogenes EGD-e]
 gi|33439124|gb|AAQ18702.1| putative response regulator [Listeria monocytogenes]
 gi|47015780|gb|EAL06709.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217332748|gb|ACK38542.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|258600380|gb|EEW13705.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610305|gb|EEW22913.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284058422|gb|ADB69363.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284061468|gb|ADB72407.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|293591325|gb|EFF99659.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 231

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + E++
Sbjct: 1   MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++++  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 61  GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|312131048|ref|YP_003998388.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907594|gb|ADQ18035.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1336

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K++IVEDNE        L  +  +      NG E ++ A Q  PD+I+ D+ +  ++GL
Sbjct: 1084 QKLLIVEDNEDLRNYLVSLFHSH-FETHSAANGKEGMDKALQILPDIILSDVMMPVMNGL 1142

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  ++IK + +   IP+I +TA A    E    + G + YI KP +  +    I   I
Sbjct: 1143 EFCERIKNNPKTAHIPLILLTARAATLHELEGLESGADDYIVKPFNPKVLHTKILSLI 1200


>gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 968

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 73/121 (60%), Gaps = 5/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR---QHKPDVIIMDIQLQEISG 61
           +++VEDNELN ++  +++   G++     NG EA+E  +     K D+++MD+Q+  ++G
Sbjct: 847 ILLVEDNELNREIAVEILNEYGFLVDTAENGAEAVEKVKNSTSGKYDLVLMDVQMPVMNG 906

Query: 62  LEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E TKQI+   D  L  I ++A+TA A   D ++  + G + ++SKPI +   + T+++ 
Sbjct: 907 YEATKQIRALDDPALSGITILAMTANAFDEDRKKALEYGMDGFLSKPIVIEELISTLQRN 966

Query: 120 I 120
           +
Sbjct: 967 L 967



 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
           K ++V+D+         ++   G  +  T +G EA+  ARQ           I+D +L +
Sbjct: 704 KALVVDDDFNTCDSVTKMLVRVGMRSEWTLSGKEAVLRARQSMELGDAFHAYIIDWRLPD 763

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+E+T+QI+   +  + P+I +TA+     E   R  G  A+ +KP+ +S   ET+  
Sbjct: 764 MNGIEVTRQIRSLGD--DTPIIILTAYDWSDIEAEARAAGVTAFCAKPLFMSDIRETLMT 821

Query: 119 YIGEA 123
            IG++
Sbjct: 822 AIGQS 826


>gi|294808197|ref|ZP_06766963.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|294444606|gb|EFG13307.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1483

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 1197 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1255

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S       ++  +
Sbjct: 1256 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLL 1310


>gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 231

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IVED      L    ++   Y   +     EALE   ++  D+ I+DI L ++S
Sbjct: 1   MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I++       P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLNICQKIRDKYNY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis EAS054]
 gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
 gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
          Length = 253

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +   G+      +G  A+        D +++D+ L  I G E
Sbjct: 24  RILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++        PV+ +TA     D      GG + Y++KP +L      ++     
Sbjct: 84  VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|120596940|ref|YP_961514.1| osmolarity response regulator [Shewanella sp. W3-18-1]
 gi|146294927|ref|YP_001185351.1| osmolarity response regulator [Shewanella putrefaciens CN-32]
 gi|120557033|gb|ABM22960.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145566617|gb|ABP77552.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319424531|gb|ADV52605.1| two component transcriptional regulator for porins, OmpR
           [Shewanella putrefaciens 200]
          Length = 241

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++   L  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQQGSL--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
          Length = 229

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++IVED     +     ++  GY  +   NG E LE+A +   D+I++D+ L E+ 
Sbjct: 1   MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++++   ++  ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQQE---KDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300857935|ref|YP_003782918.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685389|gb|ADK28311.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302330215|gb|ADL20409.1| Putative sensor kinase [Corynebacterium pseudotuberculosis 1002]
          Length = 225

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 63/113 (55%), Gaps = 3/113 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+    ++   ++E  G+  +   +G  A+E   + +PD++++D+ L  ++
Sbjct: 1   MPQKILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
           G++I + I+++S    +P++ +TA     D     + G + YI+KP      +
Sbjct: 61  GIDICRLIRQNS---TVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELI 110


>gi|284052122|ref|ZP_06382332.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira platensis str. Paraca]
 gi|291571292|dbj|BAI93564.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 378

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 65/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++    ++  +GY   +  NG +A+ +A    PD+I++DI +  ++G ++
Sbjct: 13  ILIVDDKPENLQFLFTMLTENGYDVRRVINGKQAINVALFEPPDLILLDIMMPNLNGYDV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K +KE SE ++IP+I ++A     ++ +    G   YISKP  L   +  ++  +
Sbjct: 73  CKILKEKSETKDIPIIFLSALKDVSEKVKGFNVGGVDYISKPFELLEILARVENQL 128


>gi|251794919|ref|YP_003009650.1| signal transduction histidine kinase, LytS [Paenibacillus sp.
           JDR-2]
 gi|247542545|gb|ACS99563.1| signal transduction histidine kinase, LytS [Paenibacillus sp.
           JDR-2]
          Length = 1112

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEISG 61
           K+++V+D+  N+K+ ++L  +S Y      NG +AL+L +QH+ ++  +++D+ +  +SG
Sbjct: 772 KILLVDDDSSNIKVLQELFPSSRYHVFVAYNGEDALKLIKQHRGELSLVLLDVMMPGLSG 831

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ ++I+E++ L ++PV+ +T      D     + G   ++ KP S    +  ++  +
Sbjct: 832 YEVCRRIREENPLYQLPVLLLTVRNSPADIALGFEAGANDFLVKPFSGKELLARVQTLL 890


>gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 968

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED+ L+    + ++E SGY     ++G EAL+   +   D+I+MD+Q+  + G+E
Sbjct: 842 RILLAEDDSLSSITCKRMLEKSGYSVTAVKDGQEALQRLTKEDFDLILMDVQMPVMDGVE 901

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK I+  S L     IP++A+TA+AM GD+E     G + YISKP+  +  +E I++ I
Sbjct: 902 ATKAIRGASNLGAKSSIPIVAMTAYAMTGDKESFLAAGMDDYISKPVDKAALVEVIERVI 961


>gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 7   RLLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + Y+ KP         I+  +  +
Sbjct: 66  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRS 123


>gi|254482005|ref|ZP_05095247.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037695|gb|EEB78360.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 231

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+I++D++    L    +E  G+      +G EA+   +Q + D +++DI L  + 
Sbjct: 1   MKDHVLIIDDDKELCALLAQYLELQGFEVSSIHDGAEAVTHLQQQEYDTLVLDIMLPGMM 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++I+   +  + PV+ +TA     D     + G + Y+ KP +       ++  +
Sbjct: 61  GLDVLRKIR---DFTDTPVLMLTARGEDTDRIVGLEMGADDYLPKPCNPRELAARLRAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|71909509|ref|YP_287096.1| response regulator receiver [Dechloromonas aromatica RCB]
 gi|71849130|gb|AAZ48626.1| Response regulator receiver [Dechloromonas aromatica RCB]
          Length = 121

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 59/117 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D+        D++  +GY       G E +  A+  KPD+I+MD+ +  ++G 
Sbjct: 4   KNILVVDDSPTERFFTVDVLTKAGYQVSTAETGEEGIAKAKATKPDLILMDVVMPGLNGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + T+ +  D E + IP+I  T+   + D+    + G   Y+ KP++    ++ I   
Sbjct: 64  QATRTLTRDEETKGIPIIVCTSKGQETDKIWGLRQGAIDYLVKPLNPEELLQRIAAL 120


>gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
 gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
          Length = 991

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +N ++   ++  +G       NG+EAL+       D+++MD Q+ E+ G E
Sbjct: 736 RILVVEDSVVNQQVLVAMLSKNGCSVDIAENGVEALKALGTTPYDLVLMDCQMPEMDGFE 795

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI---FMETIK 117
            T++I+         +I VIAVTA AMKGD ER    G   YI KP+  S     +E I 
Sbjct: 796 ATRRIRSGEHGVLNPDIAVIAVTANAMKGDRERCLHAGMNDYIPKPVRTSDIVGLLERIG 855

Query: 118 KYIGE 122
           +Y  E
Sbjct: 856 RYSRE 860


>gi|312130582|ref|YP_003997922.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907128|gb|ADQ17569.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1365

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVEDNE   ++    +E + Y   +  NG E  +  R   PD++I DI +    G+ +
Sbjct: 1107 VLIVEDNEEIRQVISQSLEKT-YAINEAANGQEGWQKVRSLLPDLVITDIMMPVEDGITL 1165

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + IK++ E   IPV+ +TA           + G + Y++KP    +    I+  +
Sbjct: 1166 LRNIKQNLETNHIPVLLLTARTAMESVIEGLQSGSDDYLTKPFHPEVLSLKIRNIL 1221


>gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
 gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
          Length = 237

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +   G+      +G  A+        D +++D+ L  I G E
Sbjct: 24  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++        PV+ +TA     D      GG + Y++KP +L      ++     
Sbjct: 84  VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 232

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
           +++++VED      +  D +  SG+ A    +G  A+        PD+ ++DI L  + G
Sbjct: 6   QRILVVEDEPDIADVVLDYLRHSGFEAEHVADGHAAIARLTGPTPPDLTLLDIMLPGMDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q +  ++    P+I +TA   + D     + G + YI KP S    +  ++  + 
Sbjct: 66  LEVLRQARRRTDR---PIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLR 122

Query: 122 EA 123
            +
Sbjct: 123 RS 124


>gi|224535281|ref|ZP_03675820.1| hypothetical protein BACCELL_00142 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224523089|gb|EEF92194.1| hypothetical protein BACCELL_00142 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1328

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE  +     L++   Y  LQ RNG+EAL +  + + ++I+ DI + E+ G+E+ 
Sbjct: 1080 LLVEDNEDLLSSMVRLLQGR-YHILQARNGVEALAVLEKEEVNLIVSDIMMPEMDGIELC 1138

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++IKE  E   IPVI +TA     D+    + G + YI KP+ LS+ +  I   + ++
Sbjct: 1139 RRIKEKFETCHIPVILLTAKITDEDQVMGYESGADGYICKPLRLSVLLAKIDNLLKKS 1196


>gi|197286720|ref|YP_002152592.1| osmolarity transcriptional regulator [Proteus mirabilis HI4320]
 gi|227355090|ref|ZP_03839501.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194684207|emb|CAR45696.1| osmolarity transcriptional regulator (two-component system response
           regulator) [Proteus mirabilis HI4320]
 gi|227164877|gb|EEI49724.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 240

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KV+IV+D+     L    +   G+      N  +   L  +    +I++D+ L    G
Sbjct: 4   SYKVLIVDDDLRLRSLLERYLTEQGFQIRTAANSDQMDRLLTRESIHLIVLDLMLPGEDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++++  +    IP+I VTA   + D     + G + YISKP +    +  I+  + 
Sbjct: 64  LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|209550328|ref|YP_002282245.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536084|gb|ACI56019.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 233

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D+     L    +  +G+      +G EA         D+IIMD+ +   SG+
Sbjct: 12  AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++T+ ++    ++ +P+I +TA A  G+     + G + Y+SKP      +  I   +  
Sbjct: 72  DVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I ED           ++ +G+      +G++AL+ A   + D++I+D+ L    G
Sbjct: 1   MSRILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNLPHQDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I KQ++   E  ++P+I +TA     D+    + G + Y++KP   +  +  ++  + 
Sbjct: 61  FQILKQLRGQGE--KVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLR 118


>gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 233

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 2   LKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           +K     +++V+D E  + + +  +E   Y      NG EA+E   Q+  D +I+D+ L 
Sbjct: 1   MKTDGRNILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNSIDFVILDLMLP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++SG EI K+I+ +S+   +P++ +TA     D       G + Y+ KP S    +  + 
Sbjct: 61  DLSGEEICKKIRIESQ---VPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVN 117

Query: 118 KYIGE 122
                
Sbjct: 118 AIWRR 122


>gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G EAL++  +   D+ ++D+ L  I G
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++  +++ +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 61  LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 233

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IV+D +   KL    ++  GY  LQ  +G E LE+ ++    +I++DI + +I
Sbjct: 1   MSKETILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+ +  +++E   + E+P+I ++A     D+      G + Y++KP +    +  IK  
Sbjct: 61  DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 929

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           K ++IV+D+  N+   +  +E  G   L  ++G+E LE+ + +   D+++MDI +  + G
Sbjct: 790 KNILIVDDDNRNIYALKTALEKRGMHILVAKDGLECLEVLQANPDIDLVLMDIMMPNMDG 849

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E    I++  +  ++P+IA+TA AMK D ++  + G   YISKP++L   +  ++ ++
Sbjct: 850 YEAMTIIRQQMKRIDLPIIALTAKAMKNDRDKSLQAGASDYISKPLNLDQLISVLRVWL 908


>gi|266623677|ref|ZP_06116612.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
 gi|288864523|gb|EFC96821.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
          Length = 223

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D +    L    +  +GY     ++G EA+E+    + D+I++DI L  I G
Sbjct: 1   MIKILIVDDEKPICDLIDLNLSEAGYHCRAVQDGAEAVEIIEHERFDLILLDIMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I + I+       IPVI +TA     D  +  K G + Y+ KP  +   +  ++  + 
Sbjct: 61  FDIMEYIRPME----IPVIFITAKYEVRDRVKGLKLGADDYLVKPFDVVELVARVEAVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 236

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 11  MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 71  GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
 gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
          Length = 1055

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 3/120 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VED+  N    + L+E +G+  L   NG +A EL      D I+MDIQ+  + G+E
Sbjct: 931  HVLLVEDDPSNRLPIQKLLEKAGHEVLLAENGRQAFELLAASDIDCILMDIQMPVMDGIE 990

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ I+E + L   +++P+IA+TA+AM GD+E+    G   Y +KP+++   ++ + + +
Sbjct: 991  ATRIIRESAALGPKKDVPIIALTAYAMDGDKEKFLAAGMNGYAAKPVTIENLLQKMDEVL 1050


>gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
 gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
          Length = 240

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D++  ++    L+E  GY  L+  NGMEAL++    K  +II+D+ + E++GL 
Sbjct: 11  TVLVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVTDKVHLIILDVMMPELNGLS 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I+E +    IPVI ++A   + D+      G + Y++KP + +  M  +K  +  
Sbjct: 71  ALMKIREKN---NIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRR 126


>gi|160946255|ref|ZP_02093466.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
 gi|158447778|gb|EDP24773.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
          Length = 226

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED          +++ + Y      +G EAL        D +++DI + ++ G+ 
Sbjct: 2   RILICEDEIDLADGLCTILKGNKYSVDVVYDGEEALTYLEAENYDAVVLDIMMPKVDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I+E+     IPVI +TA +   D+      G + Y++KP  +   +  ++     
Sbjct: 62  VLKTIRENGN--SIPVIMLTAKSELEDKVIGLDCGADDYLTKPFEVKELLARLRAITRR 118


>gi|91774108|ref|YP_566800.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
 gi|91713123|gb|ABE53050.1| PhoP-containing response regulator receiver [Methanococcoides
           burtonii DSM 6242]
          Length = 356

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +L R  + T  Y  +   NG +A++ + +  PD+I++DI + ++ G E
Sbjct: 227 KILVVDDEPDIPELIRLSLATEPYDFIVAYNGEDAVKKSIEELPDLILLDIMMPDMDGYE 286

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++KED   ++I VI V+A     D+ +  + G + YISKP         IK  +  
Sbjct: 287 VVERLKEDPYARDIAVIMVSAKTEIEDKLKGMELGIDDYISKPFDKREINARIKMVMKR 345


>gi|37522691|ref|NP_926068.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35213693|dbj|BAC91063.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 358

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   N+ L + L+ + GY      +G E L    ++ PD++++D+ +  + G E
Sbjct: 7   RILVVDDLPDNIALVQFLLASEGYEIETASSGAECLARVYKNSPDLLLLDVMMPGMDGYE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +T+++K D  L  +P++ VTA             G + +I KPI     +  ++  + 
Sbjct: 67  VTRRLKSDGHLPFLPILLVTASDRPS-AVLGLDAGADEFIRKPIEPDELLARVRSLLR 123


>gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 223

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED     +   D +  +GY+     +G++A  L  ++  D +I+D+ L ++ GL 
Sbjct: 2   RILLIEDEATLARQLADTLSQAGYVVDHASDGIDAEHLGTENPYDAVILDLGLPKLDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+ ++      +PV+ +TA     ++      G + Y++KP      +  I+  I  +
Sbjct: 62  VLKRWRQAGNG--VPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRRS 119


>gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 858

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V++ EDNE+N ++   ++ + G       NG+EA++  + ++  +++MDIQ+  + G 
Sbjct: 740 KTVLLAEDNEINQEIAIAILNSFGLEVELAENGLEAVQKIQTNQYALVLMDIQMPIMDGY 799

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + T+ I++D+    +P+IA+TA AM  D     K G   +I KP         + K+  
Sbjct: 800 QATRLIRKDNRFNALPIIAMTANAMNTDRAESLKAGMNEHIGKPFDPEALKRLLGKWCR 858


>gi|294643137|ref|ZP_06720968.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292641520|gb|EFF59707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 947

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 702 VLVIDDNADIRSYVRRLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 760

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 761 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 816


>gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++  +H  DV ++D+ L  I G
Sbjct: 4   MSTILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQILSEHIVDVALLDVMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  +++ +I +TA     D+ +    G + YI+KP S       I+  + 
Sbjct: 64  FQVCKAIREEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
 gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    +    ++   Y   +   G EAL      K D+ ++D+ L +I G EI
Sbjct: 3   ILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALNCIETTKIDLALLDVMLPDIDGFEI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+E       PVI +TA     D+      G + YI KP +    +  +K  +  
Sbjct: 63  LKRIREKYTF---PVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 117


>gi|158421790|ref|YP_001523082.1| response regulator [Azorhizobium caulinodans ORS 571]
 gi|158328679|dbj|BAF86164.1| response regulator [Azorhizobium caulinodans ORS 571]
          Length = 245

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED+     L  D +   GY      +G     +    +PD++I+DI L    GL 
Sbjct: 9   TLLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIMLPGEDGLS 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      ++PV+ +TA   + D     + G + Y+ KP +    +  I+  +  
Sbjct: 69  LCRRLRAQG---DVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRR 124


>gi|312891036|ref|ZP_07750560.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311296503|gb|EFQ73648.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1400

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+++EDNE      +D +    Y   +  +G++  +      P +I+ DI +  ++G+++
Sbjct: 1144 VLLIEDNEDFRFYLKDNL-KEHYRVTEAVDGIDGWQKVLATHPSLIVSDISMPGMNGIDL 1202

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +IK DS  + IPVI +TA   + ++ +  + G   Y++KP +  I +  IK  + +
Sbjct: 1203 CHKIKNDSRTKHIPVILLTAITGQKEQLKGLETGASDYLTKPFNFEILLSKIKNQLSQ 1260


>gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 219

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED    +      ++ +G+    T  G +A+ LA Q   D+II+D+ L +I G
Sbjct: 1   MSRILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQEDFDLIILDVGLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++        PVI +TA +   D     +GG + Y+ KP S    +  I+  + 
Sbjct: 61  FEVLQQLRGQGVG--TPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118


>gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 319

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IPVI +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|257059245|ref|YP_003137133.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256589411|gb|ACV00298.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 715

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 61/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IV+D   N++L RD ++  GY       GM AL  A+    D+I++DI+L +  G EI 
Sbjct: 10  LIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVTDLILLDIKLPDYDGYEIC 69

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++K D +   IPVI ++A     D+ +    G   YI+KP  +   +  +  ++
Sbjct: 70  RRLKADEQTAHIPVIFLSALNETFDKVQGFAVGGADYITKPFQIEEVLARVATHL 124


>gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
 gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
          Length = 222

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 71/123 (57%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++VED+  + +L +  + ++GY      +G+E +++ +    ++I++DI +  + 
Sbjct: 1   MEKYILVVEDDYKSQQLLQQFLTSNGYKVDCANDGLEGIQMYKDRNYNLILLDIVMPNLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+++S   ++P+I VTA + + D+ +     C+ YI KP S ++ ++ I+  +
Sbjct: 61  GFSMCKMIRKES---DVPIIFVTALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIEAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|323487591|ref|ZP_08092881.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|291547394|emb|CBL20502.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
 gi|323399090|gb|EGA91498.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
          Length = 231

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I++D +    L    ++   Y+  +     +A+        D+ I+DI L +++
Sbjct: 1   MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I++       P+I +TA   + D+      G + Y++KP      +  +K  +
Sbjct: 61  GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 11  MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 71  GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 250

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 9/126 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-------KPDVIIMDIQL 56
           +++IVED E+   +    +E  GY AL   +G  ALEL +         + D++++D+ L
Sbjct: 20  RILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDLML 79

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I+GL+I + ++    +  IP++ ++A A + D     + G + Y++KP S+   +   
Sbjct: 80  PQINGLDICRLLRYHGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 117 KKYIGE 122
           +  I  
Sbjct: 138 RALIRR 143


>gi|158521150|ref|YP_001529020.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfococcus oleovorans Hxd3]
 gi|158509976|gb|ABW66943.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfococcus oleovorans Hxd3]
          Length = 348

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E N++L    +   GY      NG EA+  A+   PD+IIMDI +  + G E
Sbjct: 5   KILLVDDEESNLRLLTQWLVPLGYDFELAANGKEAVRKAKDGMPDLIIMDIMMPVMDGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K D   + IP+I VTA   +  + +        ++SKPI  S  +  ++  +
Sbjct: 65  ACKILKTDKGTENIPIIMVTALHDRESKLKGLSVSANDFLSKPIDHSELIIRVQNLL 121


>gi|38233301|ref|NP_939068.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199560|emb|CAE49211.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 232

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++E  G+  +   +G  A++  R   PD++++D+ L  ++
Sbjct: 8   MAPKILVVDDDPAISEMLTIVLEAEGFEPVAVTDGAVAVDAFRTESPDLVLLDLMLPGMN 67

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
           G++I + I+++S    +P++ +TA     D     + G + YI+KP      +
Sbjct: 68  GIDICRIIRQESA---VPIVMLTAKTDTVDVVLGLESGADDYINKPFKPKELI 117


>gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1888

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 6/122 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++V+D+  +  +   ++ + G+   +  NG EA+ L +Q +P +I MD+++  + G E
Sbjct: 1668 RILVVDDSIDSRLVLVKILTSIGFAVQEAANGTEAIALWQQWQPHLIFMDMRMPIMDGYE 1727

Query: 64   ITKQIKEDSELQEIP-----VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             TK IK   E   IP     +IA+TA A +   E   K GC+ YI+KP      ++ + +
Sbjct: 1728 ATKIIKAREETS-IPNRKTIIIALTANAFEEQREATIKAGCDDYINKPFREEELLKKLSE 1786

Query: 119  YI 120
            Y+
Sbjct: 1787 YL 1788



 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 55/117 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D   N+    D++    Y      +G  A+  A    PD+I+++  + +I+G E
Sbjct: 7   KILLVDDKLENLHFLSDILHNQVYQVQSALSGELAINTALAFPPDLIVLNFLIAKINGYE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K   + Q+IP+I         +E  +   G   YI++P      +  I+  +
Sbjct: 67  VYQNLKSHHKTQDIPIIFFGVLDELSEEVNVCDLGDVDYITQPFQAKEVLLRIQNQL 123


>gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 224

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED+    ++ ++ +   GY  +  R+G  A+  A +    +I++DI L +  G++
Sbjct: 2   KVLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIMLPKFDGMK 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +I+E   +++IPVI +TA +   D+      G + YI+KP S    +  I   +  
Sbjct: 62  VLSRIRE---VKDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRR 117


>gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 224

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED +   +L + +++  G+      +G+  L++A +   D+ I+D+ L ++ G+EI
Sbjct: 3   ILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLMLPDLDGVEI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + ++        P++ +TA     D       G + Y+ KP +++  +  +   +  A
Sbjct: 63  CRHLRA--ARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRA 119


>gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1355

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 6/121 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED+ +N K+   +++  GY A    NG+E LE   +   DVI+MD+Q+  + GLE
Sbjct: 1090 RILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEALERQPYDVILMDMQMPIMDGLE 1149

Query: 64   ITKQIKEDSELQEIP------VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
              +QIK+  + QE P      +IAVTA AM+ D       G + YISKPI +   ++ ++
Sbjct: 1150 AARQIKKRYDNQEKPYSPRPRIIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVLR 1209

Query: 118  K 118
             
Sbjct: 1210 N 1210



 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 57/124 (45%), Gaps = 12/124 (9%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K+++I++ +  N ++    ++  G +   T +  EA+   +Q K  D+ I+++++  + G
Sbjct: 942  KRLLIIDSHPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQGKTFDIAIVEMEIANLDG 1001

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMK-----GDEERIRKGGCEAYISKPISLSIFMETI 116
                 Q+++ S   ++P++ + +   +        +        A+++KPI  S     +
Sbjct: 1002 FNFATQVRQTSAGVDLPLVMLISVGQQNFNPTDHRD------FVAFLNKPIKQSPLYNIL 1055

Query: 117  KKYI 120
               +
Sbjct: 1056 INVL 1059


>gi|254442851|ref|ZP_05056327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257159|gb|EDY81467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 795

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +V++ EDN++N K+ R ++  +G+      +G EAL+  R  + D++ MD Q+  ++G
Sbjct: 670 SARVLVAEDNKVNQKVIRMMLGRAGFDCELVNDGKEALDRLRDEEFDLVFMDCQMPILNG 729

Query: 62  LEITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E T++I++ S  Q  +P+IA+TA A+KG EE+  + G   +++KPI  +     + K+
Sbjct: 730 FEATEEIRKSSGSQSGVPIIALTANALKGYEEQCLQAGMNDFMTKPIDPNDLRAMLGKW 788


>gi|254413669|ref|ZP_05027439.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179776|gb|EDX74770.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 810

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 65/117 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+  ++   R L+   GY    + NG +AL+      PD+I++DI + +I G +
Sbjct: 22  TILIVDDSPDSLSFLRKLLAEQGYTVRVSLNGRQALQSVDLMPPDLILLDILMPDIDGYQ 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +Q+K + E Q IP+I ++A     D+ +  + G   YISKPI+    +  I+  +
Sbjct: 82  VCQQLKANPETQAIPIIFISARKETFDKVKAFEIGAADYISKPIATQEVLVRIEHQL 138


>gi|166032342|ref|ZP_02235171.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC
           27755]
 gi|166028065|gb|EDR46822.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC
           27755]
          Length = 859

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 5/121 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQEIS 60
            V++VEDNELN+++ R L+E +G   +  +NG EAL++    R+ + D+I+MDI +  + 
Sbjct: 736 HVLLVEDNELNLEIARYLLEEAGVQVIAAKNGQEALDIFEQSREQEIDLILMDIMMPVMD 795

Query: 61  GLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           GLE T++I+         +P+IA++A A   D ++ +  G   +++KP  +   +  I +
Sbjct: 796 GLEATRRIRTCTHPRGATVPIIAISANAFADDIQKAKNAGMNEHLAKPFEMEKVLRAISR 855

Query: 119 Y 119
           Y
Sbjct: 856 Y 856


>gi|160914841|ref|ZP_02077055.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
 gi|158433381|gb|EDP11670.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
          Length = 246

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  K++IVED+     L    ++T+ Y      NG  AL     H  D++++D+ L +
Sbjct: 1   MSQNIKILIVEDDGPIRNLIATALQTNAYKYDLAANGKTALLALSTHHYDIVLLDLGLPD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G+EI  Q++        P+I ++A     D+      G + Y++KP S+   +  ++ 
Sbjct: 61  KDGIEIIDQLR---TFSTTPIIVISARTNDEDKIAALDAGADDYLTKPFSVEELLARVRS 117

Query: 119 YIGEA 123
            +  A
Sbjct: 118 TLRRA 122


>gi|153808092|ref|ZP_01960760.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
 gi|149128995|gb|EDM20211.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
          Length = 229

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++       +I++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  ++P+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|71083864|ref|YP_266584.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062977|gb|AAZ21980.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 226

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 67/123 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   + IVED +  + L +  +E  GY    + NG E +E  ++  PD++++D  L + S
Sbjct: 1   MSVSIHIVEDEQPIITLVKYNLEKEGYKVSSSDNGNEGIEDIKKLFPDLVLLDWMLPDFS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI K +K++ + +EIP+I +TA     D+ +    G + YI+KP S    +  IK  +
Sbjct: 61  GVEICKILKKEKKFKEIPIIMLTAKGEDEDKIKGLNSGADDYITKPFSFPELLARIKALL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|67925981|ref|ZP_00519251.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
 gi|67852170|gb|EAM47659.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
          Length = 174

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+     L    ++  GY  +   NG E L  A++  P +II D  +  +SG
Sbjct: 1   MVQILLIDDDSTIRLLLERTLKRQGYDVVCAGNGEEGLVKAKELHPAMIICDWVMPGVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ +Q+K   +L     I +T+     D  +    G + ++ KPI ++ F+  I+  + 
Sbjct: 61  LQVCRQVKSLPDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARIRAGLR 120


>gi|302670595|ref|YP_003830555.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395068|gb|ADL33973.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 225

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +   GY+ ++  +G +AL++  + K   +II+D+ + +  G 
Sbjct: 5   KILVVDDESRMRKLVKDFLVKDGYLVVEAEDGQQALDIFYEDKDISLIILDVMMPKRDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I+ +S+   +P+I +TA A + DE    + G + YISKP S  I    +   +  
Sbjct: 65  EVCKEIRTNSK---VPIIMLTAKAEERDELLGFELGVDEYISKPFSPKILAARVSAILRR 121


>gi|296448200|ref|ZP_06890097.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b]
 gi|296254284|gb|EFH01414.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b]
          Length = 1142

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
            +++++VED+  N+     ++E  G  AL  R G EALE   R+   D I+MDI + E+ G
Sbjct: 1022 RRILLVEDDVRNIFSLTAMLEREGAKALIARTGREALECLDREASIDFILMDIMMPEMDG 1081

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            LE  +QI+   E   +P+IA+TA AM  D E   + G   Y++KPI +   + +++ ++ 
Sbjct: 1082 LEAIRQIRARKEFAFVPIIALTAKAMSDDRENCLEAGANDYVAKPIDVEKLLSSMRVWMP 1141

Query: 122  E 122
            +
Sbjct: 1142 K 1142



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED+ L  ++ RDL    G+  +      EAL LA   +P+ +++DI L + SGL +
Sbjct: 756 VLIVEDDPLFAQILRDLARELGFKCIVAGTADEALRLASAFRPEAVVLDIGLPDRSGLTV 815

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            + +K D  ++  P+  V+       ++   + G   YI KP      +
Sbjct: 816 LELLKRDPAMRHAPIHIVSVHD---YQQVALEMGAVGYILKPAKREHLV 861



 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED  +      DL+ T G   +       ALE  R  + D +++D+ L  +SG E+
Sbjct: 878 ILIVEDEGMQRDALIDLLATEGTDIVAVETAEGALEKLRDQRFDCVVLDLMLPGVSGFEL 937

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEER 93
             ++  +      PVI  TA ++  DEE+
Sbjct: 938 LGELSRNERHSLPPVIVYTARSLTIDEEQ 966


>gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 224

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +   ++  + +    Y      NG EAL   +  + DV+I+DI +  + GLE
Sbjct: 2   RILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIMMPIVDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ +   +++PV+ +TA     D  +    G + Y+ KP +    +  I+  + +
Sbjct: 62  VLQTLRANG--KQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLRK 118


>gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 227

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED E   ++ +  +E  GY +   + G EA+E       D+I++D+ L  IS
Sbjct: 1   MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+  + +  IP+I +TA     D+      G   YI+KP  +   +  I+  +
Sbjct: 61  GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
          Length = 229

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G EAL++  +   D+ ++D+ L  I G
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++E     +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 61  LEVCKAIRKENEKMG--IIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 250

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++V+D +  + +    ++   +       NG E L L + H  D+I++D+ L +I G 
Sbjct: 18  KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +QI+        P++ VTA +   D+      G + YI+KP +       I   +  
Sbjct: 78  ELCRQIR---NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRR 134


>gi|255023092|ref|ZP_05295078.1| regulatory protein VanR [Listeria monocytogenes FSL J1-208]
          Length = 231

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + E++
Sbjct: 1   MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++++  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 61  GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1769

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 63/115 (54%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++ EDNE N+      +   GY     +NG EA+  A    PD+I+MDIQ+  + GLE  
Sbjct: 1641 LLAEDNEANISTISSYLTAKGYRIELAKNGQEAINQAVALSPDLILMDIQMPGMDGLEAM 1700

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K+I+E  EL   P+IA+TA AM+ D +     G   Y+SKP+ L     TI+  +
Sbjct: 1701 KRIREIPELATTPIIALTALAMESDRKACLLAGANEYLSKPVRLKQLTMTIQDLL 1755


>gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 1206

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 77/119 (64%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D + N++L + L+E++G+     RNG+EA  L + ++ D+++MDIQ+ E+ GLE 
Sbjct: 836 ILIVDDVKQNVELIQILMESNGHKVNIARNGLEAFHLFQDNQFDLVLMDIQMPEMDGLEA 895

Query: 65  TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T+QI+     +   + P+IA++A   + D+++ +  G + ++SKPI +    + I K+I
Sbjct: 896 TRQIRSFEIQNNRTQTPIIALSASVFEEDKQQAKLAGMDGFLSKPIDVDELNQEISKWI 954


>gi|167766603|ref|ZP_02438656.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
 gi|167711726|gb|EDS22305.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
          Length = 238

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I++D +    L    ++   Y+  +     +A+        D+ I+DI L +++
Sbjct: 8   MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 67

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I++       P+I +TA   + D+      G + Y++KP      +  +K  +
Sbjct: 68  GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 124

Query: 121 GE 122
             
Sbjct: 125 RR 126


>gi|88603926|ref|YP_504104.1| response regulator receiver domain-containing protein
           [Methanospirillum hungatei JF-1]
 gi|88189388|gb|ABD42385.1| response regulator receiver domain protein (CheY-like)
           [Methanospirillum hungatei JF-1]
          Length = 124

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 79/119 (66%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+++EDN  NM L   L+E+ GY  ++  NG+  ++ A++ +PD+I++DIQL E+ 
Sbjct: 1   MTHKVLVIEDNAQNMYLIHFLLESQGYTVIEAENGLIGIQKAKEERPDIILLDIQLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G EI + ++    +  IP+IAVT++AM GD+ERI   G   YI KPI+ + F++ IK +
Sbjct: 61  GYEIARILRSTPGIDTIPIIAVTSYAMAGDKERILAAGATDYIEKPINPATFVDQIKVH 119


>gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 236

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D          ++   GY       G    E+A     D++I+D  L   +GLE
Sbjct: 8   RILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGLE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++   ++   PV+ +TA     D  +    G + Y+ KP  L   +  ++  +  +
Sbjct: 68  ICQELRRQGKI--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 125


>gi|75910898|ref|YP_325194.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75704623|gb|ABA24299.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 381

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 59/117 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D   N  +   L+    Y      +G EA+      +PD+I++D+ +  + G+E+
Sbjct: 6   ILVIDDLPDNFDVIETLLSEQDYTLHYVASGQEAIASLNLFQPDLILLDVMMPGMDGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++IK   + Q +P+I VTA   K D  R  K G + +ISKPI+       +   + 
Sbjct: 66  CQRIKAMPQWQSVPIIMVTALTAKEDLARCLKSGADDFISKPINALELRARLHSMLR 122


>gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 226

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED E        L+   G+  +   +G  AL    ++  D++++D+ L  +SG
Sbjct: 1   MTSILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+++    +  +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKRLRA---VSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|328884621|emb|CCA57860.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 228

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD++++D+ L  I G E+ 
Sbjct: 8   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLQLLREQRPDLVVLDVMLPGIDGFEVC 67

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 68  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121


>gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED E        L+E  G+      +G++A+    +H  D++++D+ L    G
Sbjct: 1   MTRILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGADLVLLDLMLPGQPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +QI+ +S+   +PVI +TA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVIRQIRLNSQ---VPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG E L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQRIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|225018010|ref|ZP_03707202.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
 gi|224949216|gb|EEG30425.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
          Length = 251

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I+ED+   +K     ++T+GY       G+E L L   + PDVI++D+ L +I GL 
Sbjct: 28  RILIIEDDTSILKFLSISLKTNGYRYDAASTGIEGLSLFLANNPDVILLDLGLPDIDGLT 87

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+++ S   +IP+I V+A   + ++      G + YI+KP  +   +  I+  + +
Sbjct: 88  VLEQVRQSS---DIPIIIVSARGQEREKVEALDLGADDYITKPFHIGELLARIRVALRK 143


>gi|188997385|ref|YP_001931636.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932452|gb|ACD67082.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 219

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDN       R+++E +GY+     +G EAL        DVII+D+ L +I GLE
Sbjct: 2   KILLVEDNLDLNNTIREVLELNGYVVDSAFDGKEALNFIENSSYDVIILDLMLPDIDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I+      + PVI +TA     D+      G + YI+KP  +   +  I+     
Sbjct: 62  VLKTIRNKGI--DTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGRR 118


>gi|170721093|ref|YP_001748781.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169759096|gb|ACA72412.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 246

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L  + ++ +G       +G +       +  D+I++DI +    GL 
Sbjct: 6   HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + +  PV+ +TA   + D     + G + Y++KP S    +  I   +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123


>gi|290769939|gb|ADD61708.1| putative protein [uncultured organism]
          Length = 221

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 78/123 (63%), Gaps = 5/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59
           K++++VEDNELN ++ + ++E +G++     +G+EA++   Q    + D+I+MDIQ+  +
Sbjct: 96  KRILLVEDNELNQEIAQTILEDAGFMVETANDGVEAVKKMEQAVPGQYDLILMDIQMPVM 155

Query: 60  SGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           +G E  KQI+  ++ E   +P++A+TA A + D E+  + G   Y++KP+S    + TI 
Sbjct: 156 NGYEAAKQIRSLKNRETASVPIVAMTANAFEEDREKSYEAGMNGYLAKPVSAEALINTID 215

Query: 118 KYI 120
           K +
Sbjct: 216 KIM 218



 Score = 64.0 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 51  IMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110
           I+D  + +++G+E  ++I+        P+I +TA+     EE  ++ G  A+  KP+ +S
Sbjct: 12  IIDWLMPDMNGIETVRRIRRVIGDSS-PIIILTAYDWSDIEEEAKEAGVTAFCEKPLFMS 70

Query: 111 IFMETI 116
              E +
Sbjct: 71  QLRELL 76


>gi|298292393|ref|YP_003694332.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928904|gb|ADH89713.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 310

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%)

Query: 1   ML----KK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI 54
           M+    ++  V++V+D+   + L  D +E +G   L    G  AL L  +  PDVI+MD 
Sbjct: 1   MMHSVERRDIVLVVDDSPETLSLLTDALEAAGATVLVAVEGANALALIERITPDVILMDA 60

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            +  + G E  +++K +  +  +PVI +T  +      +  + G   Y++KPIS    + 
Sbjct: 61  VMPGMDGFETCRRLKRNKSVAHVPVIFMTGLSETEQIVKGLEAGGVDYVTKPISPDELIA 120

Query: 115 TIKKYIGEA 123
            I+ ++  A
Sbjct: 121 RIRVHLANA 129


>gi|306819750|ref|ZP_07453409.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552215|gb|EFM40147.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 240

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +  +    + +  SGY      +G EA E+      D+I++DI L ++ G  
Sbjct: 19  KLLVVEDEKELLDSIAEGLRLSGYAVDTASDGEEAQEMCYVENYDLIVLDINLPKMDGFT 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E+ +L    VI +TA     D  +    G   Y+ KP         I+  +  
Sbjct: 79  VLQKIREEDKLVN--VIMLTARTQIKDRVKGLDLGANDYLIKPFHFDELEARIRSLLRR 135


>gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED     ++ +  ++  GY   Q  NG +AL + R+ +PD++++DI L E +G
Sbjct: 1   MANILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMFRETQPDLVLLDIMLPEKNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I K+I+E S     PVI +TA             G + YI KP      +  ++  + 
Sbjct: 61  WTILKEIRERS---TCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|291568365|dbj|BAI90637.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 598

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L   ++   GY   +  +G  AL+      PD+I++DI + +I G  +
Sbjct: 14  ILIVDDTPGNLHLLSRILSKKGYKVREAIDGKTALQEVNNKLPDLILLDIMMPDIDGYAV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             Q+K +    E+P+I ++A     D+ +  + G   YISKP      +  +K  +
Sbjct: 74  CNQLKSEPYTAEVPIIFLSALDDIFDKVKAFEVGGVDYISKPFQFQEVLIRVKNQL 129


>gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 227

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED     +  + ++E   Y      +G +AL  A     D+I++D+ + + SG+E
Sbjct: 2   RILVAEDEIDLAEALKMMLEMQKYSVEMVHDGEDALFYAESTPYDLILLDVMMPKKSGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +      PV+ +TA +   D+    + G + Y++KP   +  +  +K  +  
Sbjct: 62  VVRELRSNGI--HTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRR 118


>gi|298490636|ref|YP_003720813.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
 gi|298232554|gb|ADI63690.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
          Length = 317

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 70/116 (60%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +LN+++   +++  GY      NG +AL+  R  +PD+I++D+ + E+ GLE+
Sbjct: 11  ILVVDDVKLNLQIVAKILDNVGYECSFASNGYQALKRVRSARPDLILLDLMMPEMDGLEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++I+ + EL EIP+I ++A   +    +  + G   Y++KP   +  +  ++ ++
Sbjct: 71  CEKIQANPELSEIPIIFISASQEQEHLLQAFQKGAVDYVAKPFHSAELLARVRMHL 126


>gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory
           protein (C-terminal) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 224

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D E    L +  +E  G+      NGME L    ++ PD II+D+ L  I G++
Sbjct: 2   KILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKNLPDGIILDLMLPGIGGMD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+IKE  +  +IP++ VTA   + D     + G + YI KP ++   +  ++     
Sbjct: 62  LCKRIKE--KYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTRR 118


>gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 286

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + T +G + L L  Q   D +I+D+ L  + GL
Sbjct: 52  KRILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGWDALILDLMLPGVDGL 111

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 112 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 169


>gi|75906872|ref|YP_321168.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75700597|gb|ABA20273.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 387

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 67/116 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED+    +   DL+E  G+  L+  NG+  ++LA++  PD+II D+ + E+ G
Sbjct: 1   MNKILVIEDDIHVRQNILDLLEGEGFNILEAHNGLLGVQLAQEEIPDLIICDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E+ K +++  E   IP+I +TA + K D  +  + G + YI KP + +  +  I 
Sbjct: 61  YEVLKVLRQCPETAIIPLIFLTAKSDKNDFRQGMEMGADDYIIKPFTRAELLAAIA 116


>gi|84623104|ref|YP_450476.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84367044|dbj|BAE68202.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 229

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++VED+  +  +    +   G+      +G  A++L RQ  PD++++D+ L ++SG+
Sbjct: 4   KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   I+      + PVI VTA   + ++    + G + Y+ KP S    +  +   +  
Sbjct: 64  EVLSAIR---RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
          Length = 232

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEI 59
           +KK++I +DN+    +     +  G+  +   +G EAL+     +H+  V+++D+ + EI
Sbjct: 1   MKKMLIADDNKQITTILSGYAKKEGFEPVVALDGAEALDKYLQYEHEIAVVLLDVMMPEI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ ++++++S    +P+I +TA     D+      G + Y+ KP S    M  ++  
Sbjct: 61  DGFEVCRRLRKESM---VPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED     +L RD  E  G+ A    +G E    A     D+II+D+ L    G
Sbjct: 1   MKRILIIEDEIPIAELERDYFELHGFTAELAHDGEEGTAKALAGGYDLIILDLNLPGADG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I+      ++P++ V+A   + D+ R    G + +++KP S +  +   K ++ 
Sbjct: 61  LEVCRSIRAQL---DVPILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHLS 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           intracellulare ATCC 13950]
          Length = 226

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++++D    ++  R  +   GY  +   +G  AL  A +HKPDV+I+D+ L +ISG
Sbjct: 1   MTRVLVIDDEPQILRALRINLSVRGYEVVTASSGAGALRAAAEHKPDVVILDLGLPDISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++   ++        PVI ++A     D+      G + Y++KP  +  F+  ++  + 
Sbjct: 61  IDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 245

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M + K+++V+D++  +   +  +E  GY  +   NG+EAL++  +    ++I+DI +  +
Sbjct: 11  MAQPKILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGM 70

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL  T +I+E    + IP+I ++A   + D+      G + Y+SKP      +  +K  
Sbjct: 71  DGLSATMKIRES---KNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQ 127

Query: 120 IGE 122
           +  
Sbjct: 128 LRR 130


>gi|313900856|ref|ZP_07834346.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
 gi|312954276|gb|EFR35954.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
          Length = 226

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E    + R   E  G+   +  +GM+A+E  +Q + D+IIMDI +  + G
Sbjct: 1   MSKLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAEYDLIIMDIMMPNLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+I++D +    PVI ++A   + D     + G + Y+ KP S    M  +   + 
Sbjct: 61  FSAVKEIRKDVQT---PVIMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVSAILK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|303248480|ref|ZP_07334738.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490100|gb|EFL50020.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 667

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED  +N      L+   G+  ++  +G +ALE+  +   DV+++DIQ+  + GL
Sbjct: 544 RRILLVEDERINRMAVGLLLRHQGHTVIEAASGQDALEIFGREPFDVVLLDIQMPGMDGL 603

Query: 63  EITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E    +++          P++A+TA AM GD ER  + G + Y++KP+  S     + + 
Sbjct: 604 ETLALLRDTTIYGPRSATPIVALTAHAMAGDRERFLEAGMDDYLAKPVEASALAAVLARL 663

Query: 120 IGE 122
              
Sbjct: 664 TAR 666


>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 950

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N KL   +++  GY      NG EA+    +     I+MD Q+  + G E
Sbjct: 687 RILVAEDNVVNQKLAVRMLDRLGYQPDIVSNGQEAVAAFERGLYAAIVMDCQMPTMDGYE 746

Query: 64  ITKQIKEDSELQ-------EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            T++I+E  +          IP+IA+TA AM GD ER +  G + Y+SKP+        +
Sbjct: 747 ATRRIREQEQKPAASGTRAHIPIIALTANAMPGDRERCKAAGMDDYLSKPVKTDDLGRLL 806

Query: 117 KKY 119
           +++
Sbjct: 807 QRW 809



 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           ++++IV+DNE N  +   L+   G    Q R+  EA+ +  Q        D  ++D+ + 
Sbjct: 528 RRILIVDDNESNRTILHHLVSGWGMQDGQARHADEAILMLEQAAAQGRPYDAAVLDMLMP 587

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
              GL++ ++I+   +   + +I +T+    G  ER R+ G  AY++KP+        ++
Sbjct: 588 GKDGLQLAQEIRAHPQGAGVRLIVLTSLIQPGHAERARRAGFTAYLTKPVRHDQLQGCLR 647

Query: 118 KYIG 121
              G
Sbjct: 648 VVFG 651


>gi|289640898|ref|ZP_06473068.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289509213|gb|EFD30142.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 267

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IV+D+   ++  R  +   GY  +   +G  AL      +PD+I++D+ L ++ G
Sbjct: 1   MTRVLIVDDDTQILRALRITLHARGYEVMTATSGRHALAATTSGRPDIILLDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++        PVI ++      D+      G + Y++KP  +   +  ++    
Sbjct: 61  AEVIHALRS---WTTTPVIVLSGRGGSTDKVGALDAGADDYVTKPFRVDELLARLRAVAR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 225

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++VED      L  + ++   +      +G E + +A     DV+I+DI L    
Sbjct: 1   MNVRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI K ++E+      PV+ +TA +      +    G + Y+ KP  L   +  ++  I
Sbjct: 61  GWEILKSMRENGV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALI 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 227

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED E   ++ +  +E  GY +   + G EA+E       D+I++D+ L  IS
Sbjct: 1   MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+  + +  IP+I +TA     D+      G   YI+KP  +   +  I+  +
Sbjct: 61  GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|21241531|ref|NP_641113.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106880|gb|AAM35649.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 238

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+IV+D     +     +   GY  LQ   G E L L      +++++DI L +  G 
Sbjct: 11  ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGH 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++      +PVI +T  A + ++      G   Y++KP  +   M  I+  + +
Sbjct: 71  EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127

Query: 123 A 123
           A
Sbjct: 128 A 128


>gi|83311012|ref|YP_421276.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945853|dbj|BAE50717.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 228

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D     K  R  +  +GY   +  +G   L+  R   PD++I+D+ L ++ G
Sbjct: 1   MSRILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI   +++D    +IP+I ++  A + D+      G   Y++KP  ++  M  ++  + 
Sbjct: 61  QEIISAVRQD---CDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLR 117


>gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435]
 gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR
 gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED +   +     +    Y       G   L+ A  +  D+II+D+ L  I+G
Sbjct: 1   MTNILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLMLPNING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++++++   Q  P+I +TA +   D+      G + YI KP  +      I+  + 
Sbjct: 61  LEICRRVRQE---QSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G E LE   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEG-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117


>gi|239995050|ref|ZP_04715574.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 637

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 75/126 (59%), Gaps = 7/126 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQEI 59
           ++++VEDN +N  +  +++E+ GY+     NG+EALEL +    +     I+MD Q+ E+
Sbjct: 510 RILLVEDNAINQIVATNVLESEGYVVDVANNGVEALELLKSSKLKAHYSAIVMDCQMPEM 569

Query: 60  SGLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            G E TK I+        + +P+IA+TA AM+GD++   K G + +++KPI  +    T+
Sbjct: 570 DGFEATKLIRYGAAGEVYKRVPIIAMTANAMQGDKDMCMKAGMDDFLTKPIEHNKVTSTL 629

Query: 117 KKYIGE 122
           + ++ +
Sbjct: 630 QHWLNK 635



 Score = 42.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--------KPDVIIMDIQLQ 57
           +I++DN    +  +  ++  G + L   +  EA+ L  +           DV+ ++   +
Sbjct: 342 LIIDDNASTRRAMQSQLKLWGVLTLTASSIEEAISLYLKDSEQEIPAIPIDVVFLEKAEE 401

Query: 58  EISGLEITKQ----IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
           E    E ++     + ++   +   ++ +T  +             +  + KP++ S  +
Sbjct: 402 E----EFSQHFGQILLDNHRTKHTRLVLMTQLSDMESSVVYGGVDVDESLPKPLTSSDLI 457

Query: 114 ETIK 117
             ++
Sbjct: 458 RIVE 461


>gi|254411539|ref|ZP_05025316.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182040|gb|EDX77027.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 505

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+  N++    ++ ++GY   +  +G  ALE  R + PD+I++D+++Q++ G  +
Sbjct: 8   ILIVDDHPDNLRSLAAILISAGYKVRKAISGKMALETIRSYPPDLILLDVKMQQMDGYTV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +K ++  Q IPVI ++A     D+ +    G   YI KP      +  +K  +
Sbjct: 68  CSTLKANAATQRIPVIFLSALDDVEDKVKAFNVGGSDYIVKPFQAQEVLIRVKNNL 123


>gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium
           abscessus]
          Length = 227

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D           +   GY      NG++A+   R++ PD++++D+ L  + GL
Sbjct: 5   RRILVVDDEPTICASISARLRAEGYAVDTEDNGLDAVRHCRENPPDLMVLDVMLPGLDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +Q++  +    IPV+ +TA   + D       G + Y+ KP S+ + +  +   +  
Sbjct: 65  EVCRQVQAHAP---IPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRR 121


>gi|144897465|emb|CAM74329.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 382

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLE 63
           +++V+D   N+K+   L++   Y       G +AL +A  + +PD+I++DI + ++ G E
Sbjct: 9   ILVVDDTPDNLKVMSGLLKDL-YRVKIANGGEKALAIAVSETQPDLILLDIMMPDMDGHE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K D   ++IPVI +TA +   DEE     G   YI+KPIS  I M  +  ++
Sbjct: 68  VCRRLKSDERTRDIPVIFLTAKSEVEDEEIGLSLGAVDYITKPISPPIVMARVAAHL 124


>gi|332826438|gb|EGJ99267.1| hypothetical protein HMPREF9455_00300 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1371

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IV+DNE   +    L   + Y  +   +G E L +     P++I+ D+ + ++ G E  
Sbjct: 1124 LIVDDNEDFCEFITSLFIDN-YNIVTANDGEEGLRIVLDQLPEIILCDVMMPKMDGYEFC 1182

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K D     IP+I +TA + + +     + G + YI+KP ++ +    I K I
Sbjct: 1183 RQVKGDIRTSHIPIILLTAKSSEENRYSGIEAGADDYIAKPFNIDMLTLKIAKII 1237


>gi|329957698|ref|ZP_08298173.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522575|gb|EGF49684.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1347

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDNE   +   + +    +  ++  NG +ALEL + +  D+I+ D+ +  + G++
Sbjct: 1100 TILIVEDNEELRQYLSNGLSVQ-FNLIEAENGQKALELLKDNDVDLILSDVMMPIMDGVK 1158

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + K IK++     IPV  ++A      + +  + G + YI KP S+ + +  I   + 
Sbjct: 1159 LCKLIKQNLRTCHIPVYLLSAKVDIKYQLKGLQVGADDYIPKPFSMEVLVAKILNMLR 1216


>gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
 gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
          Length = 226

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I++D+     L    +E  GY A+   +G   ++ A     D +I+D+ L +++
Sbjct: 1   MNGNILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVMLPKLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K I+E  E    PV+ +TA     D     + G + Y+ KP +    +  ++  +
Sbjct: 61  GFEVLKSIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254385162|ref|ZP_05000494.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
 gi|194344039|gb|EDX25005.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
          Length = 225

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 5   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 65  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118


>gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
 gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
          Length = 216

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED +    L +  +  + Y   Q  +G   L  A     ++I++D+ L  I+G+E+
Sbjct: 2   ILIIEDEKNISNLLKLELTHANYECDQAFDGESGLNKALNQDYELILLDLMLPRINGIEV 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q++     ++ P+I +TA     D+    + G + Y++KP ++   +  I   +  
Sbjct: 62  CRQLR---LKKQTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 116


>gi|163742633|ref|ZP_02150019.1| response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161384218|gb|EDQ08601.1| response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 422

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D+ L  ++    ++  G+  ++  +G  A+E+     PD+I+ D  +  ++GL
Sbjct: 18  RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDPPDLILSDWMMPGMNGL 77

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119
           E  +  +  S+      I +T+ + K +  +    G + +++KP+S       I   ++ 
Sbjct: 78  EFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGERI 137

Query: 120 IG 121
           + 
Sbjct: 138 LR 139


>gi|15896015|ref|NP_349364.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025797|gb|AAK80704.1|AE007774_1 Response regulator (CheY receiver domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325510169|gb|ADZ21805.1| Response regulator (CheY receiver domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +M+V+D E  ++  +  +E  G+      NG +A+  +R+  P++II+D+ L  ++G E+
Sbjct: 11  IMVVDDEEHIVEFLKMGLEAEGFTVYTAFNGNDAVIYSRKLNPNLIILDVMLPYMNGYEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              IK+      IP+I +TA     D+      G + Y+ KP S    +  I   +  +
Sbjct: 71  CSLIKK---ASNIPIIMLTAKDEIDDKVLGLNLGADDYMIKPFSFKELLARINARLRNS 126


>gi|332525017|ref|ZP_08401198.1| Signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332108307|gb|EGJ09531.1| Signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 331

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 68/118 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN +N +L  +L+  +G       +G+EAL    + + D ++MD+Q+  + GLE
Sbjct: 66  RVLLAEDNPVNQELTLELLRQAGASTALAGDGLEALAWLARERFDAVLMDVQMPVLDGLE 125

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T++++    L+ +PVIA+TA AM  D E     G   +++KP    + +E ++ + G
Sbjct: 126 ATRRLRRLPGLEALPVIAMTAHAMASDREACLAAGMNDHLAKPFEPDVLIERLRHWTG 183


>gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 228

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED      L  + +E +GY  +   +G+  L L + H  D++I DI L ++ G
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+  +    IP++ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELAKEIRRTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|295696488|ref|YP_003589726.1| response regulator receiver protein [Bacillus tusciae DSM 2912]
 gi|295412090|gb|ADG06582.1| response regulator receiver protein [Bacillus tusciae DSM 2912]
          Length = 168

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV++V+D+E   +L    + + GY      NG  ALEL  + +PD++I+D+ L +++G+
Sbjct: 5   QKVLVVDDDEELRELVELYLRSHGYRTASAENGRRALELLCREQPDLLILDVLLPDVNGV 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I+  S   ++PV+ ++     GD     + G + Y++KP    + +  +K  +  
Sbjct: 65  ELCRMIRRSS---DVPVLFLSWKGTPGDIVAGLEEGGDDYLTKPFDPMVLVARVKARLRR 121


>gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 240

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 1   ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M+  K+++ VED    +   R  +E  G+       G +AL+   +   D II+D+ L +
Sbjct: 1   MMNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPD 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +G E+ KQ+++  +    P++ +TA   + D     + G + Y +KP S    +  IK 
Sbjct: 61  QNGFEVCKQLRQKYQT---PLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKA 117

Query: 119 YIGE 122
               
Sbjct: 118 IWRR 121


>gi|257884194|ref|ZP_05663847.1| two component transcriptional regulator [Enterococcus faecium
           1,231,501]
 gi|257820032|gb|EEV47180.1| two component transcriptional regulator [Enterococcus faecium
           1,231,501]
          Length = 222

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDN    KL    +E +GY       G EA ++  Q + D+ ++DI L EI G E
Sbjct: 6   KILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGYE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++E     ++PVI +TA     D     + G E YI+KP  L   +  ++  +  
Sbjct: 66  VFAYMRE----YDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 120


>gi|171912783|ref|ZP_02928253.1| two component, sigma54 specific, transcriptional regulator, Fis
           family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 488

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++I +D   ++ L  +++E  GY  L   NG +AL+LA + KPD+I++D+ +    G 
Sbjct: 4   QRILIADDTPASLSLISNVLEPRGYEILAVSNGRDALQLAPKAKPDLILLDVMMPGQDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++K   E + IPVI VT+        R  + G   YI KP      +  +  ++
Sbjct: 64  MVCRELKAADETRNIPVIFVTSRNEIESVVRGFQVGAVDYIYKPFQAQEVVTRVATHL 121


>gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 228

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+      +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRSRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|83646635|ref|YP_435070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634678|gb|ABC30645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 659

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 3/123 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVEDN++N K+   ++   G       NG EAL+  R  K D+I MD Q+  + G +
Sbjct: 519 RVLIVEDNQVNQKVTCGILNKLGIETENANNGEEALQKVRGGKYDLIFMDCQMPVMDGYQ 578

Query: 64  ITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T +I++      ++  P++A+TA A++G  +  RK G + Y+SKPI     +E ++ ++
Sbjct: 579 ATAKIRQMETRAGVKPTPIVALTANALEGAADACRKAGMDDYLSKPIKKQQLVECLQTWL 638

Query: 121 GEA 123
           G++
Sbjct: 639 GDS 641


>gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 226

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    PVI +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|86144202|ref|ZP_01062538.1| two-component system, transcriptional regulatory protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85829332|gb|EAQ47798.1| two-component system, transcriptional regulatory protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 238

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  + Y     +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGTVLKDYLSMNDYDVTHAKNGMEGFEKFKKDDFDLCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-IG 121
            + K+I+E +E  ++P+I +TA AMK D  +  K G + Y++KP    + +  IK   + 
Sbjct: 66  TLAKEIREKNE--DVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMLR 123

Query: 122 EA 123
           +A
Sbjct: 124 KA 125


>gi|291558626|emb|CBL37426.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 231

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I++D +    L    ++   Y+  +     +A+        D+ I+DI L +++
Sbjct: 1   MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I++       P+I +TA   + D+      G + Y++KP      +  +K  +
Sbjct: 61  GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
 gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
          Length = 248

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D     +L    +  +G+      +G EA+E+  + +PD+I++D+ L +I G  +
Sbjct: 14  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T++I+++      PV+ +TA     D+      G + Y++KP SL   +  I+  +  
Sbjct: 74  TRRIRQEGIA--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 129


>gi|172038233|ref|YP_001804734.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699687|gb|ACB52668.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 384

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 59/120 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+     L    ++  GY  +    G E L  A++  P +II D  +  I+G
Sbjct: 1   MVQILLIDDDRTIRSLLERTLKRQGYDVVCVDKGAEGLIKAKELHPAMIICDWVMPGITG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q+K   +L     I +T+     D  +    G + ++ KPI ++ F+  I+  + 
Sbjct: 61  LEVCRQVKRIPDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARIRAGLR 120


>gi|144901020|emb|CAM77884.1| Alkaline phosphatase synthesis transcriptional regulatory protein,
           fragment [Magnetospirillum gryphiswaldense MSR-1]
          Length = 123

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + V++V+D    +     L++  GY     R+G  AL    +H+P ++++D+ + +  
Sbjct: 1   MARSVLVVDDEPNIVLSLEFLLKQVGYDVHVARDGDAALAAIAEHRPGLVLLDVMMPKRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + ++ + +  +I +I +TA   + + E+    G + Y++KP S    +E ++ ++
Sbjct: 61  GYDVCQTVRANPDWADIRIIMLTAKGREVEREKGMALGADEYVTKPFSTRDVVEKVRSFL 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC
 gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33]
          Length = 651

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+++ +K+    + T  YI    ++G          + D+II+DI L  + G+ 
Sbjct: 2   KILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+ +       +P++ +TA      + +    G + Y+ KP      +  I+  +  
Sbjct: 62  LCKRFRAQGYT--VPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRR 118



 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KVMI++D++  ++    L++  G+      +  +   + +   PD +++D+ + +I+G E
Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++ D   Q +PV+ ++       + +    G + Y+ KP+        I   +  
Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642



 Score = 38.6 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 24/134 (17%)

Query: 10  DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--------PDVIIMDIQLQEI-S 60
           DNE N  +      + G           A  +             PDVI+M  +L  + S
Sbjct: 391 DNEFNQSIVAVA-ASRGIRIQIAPTPDIAPAMLTNEPVLDGFGEDPDVILM--RLPSMPS 447

Query: 61  GLEITKQ--------IKED----SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108
             E+ +Q         K          ++P++ +       D     + G + ++  P  
Sbjct: 448 RAEVIEQPNSELSNIWKTLQTFAERYPKLPIVVIGDRGEMSDRLEAMRRGGKLFLVTPTP 507

Query: 109 LSIFMETIKKYIGE 122
               ++T+   + +
Sbjct: 508 PEQIVDTVVNLLRD 521


>gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 236

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 11  MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 71  GLQVLQRLRADNNT--TPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|319782570|ref|YP_004142046.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168458|gb|ADV11996.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 242

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L +  +++ G+      +  E  +     + D+I++D+ L + SGL+
Sbjct: 6   HILVVDDDREIRTLLQRYLDSQGFRVTAAADRRECEQRLGSGQFDLIVLDVMLPDGSGLD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I + ++        P+I +TA     D     + G + Y+ KP +    +  I+  +  +
Sbjct: 66  ICRGLR--DRKPHTPIILLTALKEDVDRIIGLELGADDYLGKPFNPRELIARIRAVLRRS 123


>gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D    ++L    +  SG+       G +AL  A +  PD++++D+ L +  G 
Sbjct: 9   ARVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGF 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E  +L  +PV+ +TA     D       G + Y++KP SL   +  ++  +  
Sbjct: 69  SVARRLREGGDL--VPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRR 126


>gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 226

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|157964306|ref|YP_001499130.1| response regulator PleD [Rickettsia massiliae MTU5]
 gi|157844082|gb|ABV84583.1| Regulatory components of sensory transduction system [Rickettsia
           massiliae MTU5]
          Length = 456

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 64/118 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D+I++D+ + EI G
Sbjct: 7   MTTILVVDDIEPNIKLLTAKLLQEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEIDG 66

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D     IPV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 67  FEVCKTIKTDPATTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 124



 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 158 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 216

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 217 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLKR 276


>gi|117925904|ref|YP_866521.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117609660|gb|ABK45115.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 667

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+D+E N  L +  +    +      NG EAL L ++   D+I MDIQ+  + GL
Sbjct: 545 KRILLVDDSEDNRSLIQAYLRRYPHALTTAENGKEALTLVKEKHFDIIFMDIQMPVMDGL 604

Query: 63  EITKQIKEDSEL----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T+ I+         + +P+IA+TA  M  DE++    GC  +++KPI  +  ++ I  
Sbjct: 605 SATRAIRAWELTQQSNRNVPIIALTAHVMLEDEKKSIDAGCNFHLTKPIKKARLIDIIDN 664

Query: 119 Y 119
           +
Sbjct: 665 H 665


>gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 240

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   K+    +E  GY      +G  AL+ AR+ +PDV+++D+ L  + G+E
Sbjct: 14  RVLVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLDGVE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + ++++      +  VI +TA   + D+      G + Y++KP S    +  +  
Sbjct: 74  VCRRLRA---FSDCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAA 125


>gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
 gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
          Length = 1407

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED  +N K+   ++   GY      NG EA+        D++IMD+Q+ E+ GLE
Sbjct: 1288 RLLLAEDTSINQKVVIGILGKLGYHIDVVVNGAEAVRALETTPYDLVIMDLQMPEMDGLE 1347

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ I+          IPVIA+TA  M+GD E     G   Y+SKPI  +I +ETI+K++
Sbjct: 1348 ATRIIRSPDSAVLNHRIPVIALTAHTMEGDRELCMHAGMTDYVSKPIDSAILVETIRKWL 1407



 Score = 96.7 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
            +++IV+DN  N  + R    + G +  +   G + +   ++         + ++D+Q+ +
Sbjct: 1134 RILIVDDNATNRTVLRRQFLSWGAVVTELSGGAQVVAELKRAHESGEPYRLALIDMQMPD 1193

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            + G  + + IK+D +L    ++ +++   K  EE +++ GC A +SKPI  S   +T   
Sbjct: 1194 MDGATLCRSIKDDEKLAPTVLVMMSSLGSKCSEEDLKRMGCSACLSKPILQSDLFDTFAA 1253

Query: 119  YI 120
             I
Sbjct: 1254 II 1255


>gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 226

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +KK  +M+VED E         +E  GY  +  ++G EALE+ ++    +I++D  L   
Sbjct: 1   MKKAVIMLVEDEESLASFLITELELEGYEVIWAKDGREALEIFKEKDITLILLDWMLPIY 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + ++I++ S    +P+I +TA +   D       G + YI+KP  +   +  I+  
Sbjct: 61  DGLTVLRRIRQSS---NVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20]
          Length = 248

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D ++   L    +   G+       G+ A+  A++  PDVI++DI L +  GLE
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       +PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 78  VMRRVR--GHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135


>gi|319654445|ref|ZP_08008532.1| hypothetical protein HMPREF1013_05152 [Bacillus sp. 2_A_57_CT2]
 gi|317393944|gb|EFV74695.1| hypothetical protein HMPREF1013_05152 [Bacillus sp. 2_A_57_CT2]
          Length = 160

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    +KL  + ++   + A++  +G EAL + +++K D I++DI + E+ 
Sbjct: 11  MEKTILVVDDERDIVKLITESLKFEQFNAIRAYSGKEALSILKENKIDFIVLDIMMPEMD 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+++     IP++ ++A     D+    + G + Y++KP S+      IK + 
Sbjct: 71  GLEVCRKIRKE---YNIPILLLSARNRDMDKIIGLEIGADDYMTKPFSIQELTSRIKAHF 127

Query: 121 GE 122
            +
Sbjct: 128 RK 129


>gi|303328169|ref|ZP_07358608.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3]
 gi|302861995|gb|EFL84930.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3]
          Length = 238

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++EDNE  +      +E  GY     R+G   L +A + + D I++D+ L  + 
Sbjct: 1   MPVSLLLIEDNEDILANLYAYLEPLGYELDCARHGRTGLSMALEGRFDCIVLDVMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + + ++E      +PV+ +TA     D  R  + G + Y+ KP +L      I+  +
Sbjct: 61  GVSLCRNLRE-EHHSAVPVLMLTARDTVADRVRGLEAGADDYLVKPFALKELEARIRALL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|303248386|ref|ZP_07334646.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490184|gb|EFL50102.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 651

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 73/123 (59%), Gaps = 3/123 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED++++    R L+E  G++ +   +G +AL+L  +   D++ MDIQ+  + G+E
Sbjct: 513 RILLAEDDQISAIACRHLLEHMGHVVVTAADGRQALDLFAKENFDLVFMDIQMPTLDGVE 572

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++++         + P+IA+TA+AM GD +R    G   YI+KP+  +   ETI + +
Sbjct: 573 ATREMRNRDAYADKADTPIIAMTAYAMDGDAQRFLDAGMNGYIAKPVEKATLRETIARVM 632

Query: 121 GEA 123
            EA
Sbjct: 633 REA 635


>gi|297528706|ref|YP_003669981.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297251958|gb|ADI25404.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 232

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+E      +  +E   Y      +G+EAL++   +  D+I++DI ++ I G+
Sbjct: 4   KKILLVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMM-NNDFDLIVLDIMMEGIDGM 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + I+E     ++P++ V+A  ++ D+ +    G + YI+KP SL      I  ++  
Sbjct: 63  ELCRLIRERV---DVPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDCHLRR 119


>gi|293608084|ref|ZP_06690387.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828657|gb|EFF87019.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122199|gb|ADY81722.1| two component transcriptional regulator, winged helix family
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 243

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED      +    ++  G   ++  NG +A+E+      D++I+DI++ E+SG E+
Sbjct: 15  ILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHAAQPIDLVILDIKMPELSGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++ +     PVI +TA   + D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQKAAT---PVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|302536438|ref|ZP_07288780.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302445333|gb|EFL17149.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 5   LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 65  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118


>gi|170722109|ref|YP_001749797.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760112|gb|ACA73428.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 233

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    +L    ++ + +       G   LE  RQ KPD++I+D+ L  I G
Sbjct: 1   MPNILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLEAFRQDKPDLVILDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + ++++S  Q +P++ +TA     D+    + G + Y++KP    + +  ++  + 
Sbjct: 61  LQVCRLLRQES--QSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 233

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS 60
           + +++IV+D++    L  D +E  G+  +   +G EALE   +  +  ++I+DI + ++ 
Sbjct: 1   MDRILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++  +    P+I V+A +   D     + G + YI KP  +   +  +K ++
Sbjct: 61  GLELCRRVRDQLKA---PIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 227

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 66/119 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    +++    ++++GY  +  ++G EA++ A+  +PD+I++DI +   +G++
Sbjct: 9   KILVVDDEIDILEIISYNLKSAGYDTITAKDGSEAVQKAKVFRPDLIMLDIMMPNKNGID 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++I++  E ++  V+ +TA   +  E      G + YI+KPI   + +  I      
Sbjct: 69  TCREIRKLPEFKDTMVLFLTALNDEKSEIDGLNMGADDYIAKPIKPKLLVSRINALFRR 127


>gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED E        ++   G+       G +AL+   +   D++++D+ L  +SG
Sbjct: 1   MTRVLVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLMLPGLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + ++       +PVI V+A   + D+    + G + Y++KP S    +  IK  + 
Sbjct: 61  TEVCRALRTRG---NVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D    + L  D ++  G+  L   +G   +EL++Q  PD+II+DI + ++ G
Sbjct: 1   MSKILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQE-PDLIILDIMMPKMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I++D      PVI ++A   + D+ +    G + Y++KP  L   M  I+  + 
Sbjct: 60  FEVCQAIRDDVL---CPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
 gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
          Length = 238

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 14/135 (10%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------------HKPD 48
           M  ++++VED+E   +  ++ +E  G+      NG +AL   ++                
Sbjct: 1   MRARLLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFA 60

Query: 49  VIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108
           ++++D+ L  + GL++ + ++  S     P++ V+A   + D     + G + Y+ KP  
Sbjct: 61  LVVLDLMLPGLGGLDVCRALRAASNF--TPILVVSARDSETDRVLGLEVGADDYLVKPFG 118

Query: 109 LSIFMETIKKYIGEA 123
           +   +   +  +  +
Sbjct: 119 MRELVARCRALLRRS 133


>gi|172039491|ref|YP_001805992.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700945|gb|ACB53926.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 335

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 72/116 (62%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L  ++++TSGY      +G +ALE A+  +PD+I++D+ + E++GLE+
Sbjct: 14  ILVVDDIRKNLQLLIEILDTSGYGTTFAISGKQALERAKVTEPDLILLDLMMPEMNGLEV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            KQ+K++++ ++IPVI +TA           + G   Y++KP      +  IK ++
Sbjct: 74  CKQLKKNAKTEQIPVIFLTAATETNYLIEAFESGAVDYVTKPFKTPELLARIKTHL 129


>gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 240

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+I++D +L +K  R   E  G+      +G EAL +      D II+D+ L +I G+ 
Sbjct: 18  KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +I++ S   ++ +I +TA     D+    + G + Y++KP +    +  ++  I  
Sbjct: 78  LCNRIRQQS---DVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR 133


>gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
            versatilis Ellin345]
 gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1326

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 67/116 (57%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++ EDNE N ++   L+   G       +G +AL    +   D ++MD+Q+ E+ GL  
Sbjct: 981  VLLAEDNEFNQQVATGLLNEVGVNVEIAGDGKQALARLAERTYDAVLMDMQMPEMDGLAA 1040

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I++ +  +++P+IA+TA AM+ D+ER    G   +I+KPI       T+ K+I
Sbjct: 1041 TREIRKQARFKDLPIIAMTANAMEQDKERCIAAGMNDHIAKPIDPDHLFNTLLKWI 1096



 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
           ++V++V+DNE   K+  +++ +  +       G EA++  R     +   D+  +D ++ 
Sbjct: 830 RRVLVVDDNESARKVLDEMLSSMTFQVTTANGGHEAIDQVRQAAQAESPYDIAFLDWRMP 889

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + G+E  K I+     +   ++ VTA+  +       + G E  + KP+  S+  +TI 
Sbjct: 890 GMDGIETAKAIRGLGLERSPRMVMVTAYGREEVMRGAAEAGIEDVLIKPVGASLLFDTIM 949

Query: 118 KYIG 121
             +G
Sbjct: 950 AVLG 953


>gi|27377710|ref|NP_769239.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
 gi|27350855|dbj|BAC47864.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
          Length = 2095

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K  ++V+D+  N+     ++E  G   L    G EA+ L   +    +++MDI + ++ G
Sbjct: 1975 KTALLVDDDARNIFALSSVLERRGMKVLTATTGREAVTLVESNPEIAIVLMDIMMPQMDG 2034

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +    I+E+     +P+IA+TA AMKGD E+  + G   Y++KP++    +  I+ ++ 
Sbjct: 2035 YQTIGVIRENPAFLRLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTDQLLLAIRMWLH 2094

Query: 122  E 122
             
Sbjct: 2095 R 2095



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED+    ++  DL    G+  L    G EALELA+Q++P  + +D+ L ++ G  + 
Sbjct: 1710 LIVEDDPHYARVLVDLARDKGFKVLVAARGAEALELAKQYQPRAVSLDVFLPDMLGWTVL 1769

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP 106
             Q+K +   + IPV  +T   +  D +     G  ++++KP
Sbjct: 1770 SQLKHNPLTRHIPVQIIT---LDEDRQHALARGALSFVNKP 1807



 Score = 97.1 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++IVEDNE      R+L+       + T  G  AL   R+   D +++D++L ++SG 
Sbjct: 1829 KRLLIVEDNEAEQLSIRELLHHDDIEIVTTDTGAGALSTLREAPCDCVVLDLRLPDMSGF 1888

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+  QI+ D  L  IPV+  T   +  +E+        + + K + S    ++
Sbjct: 1889 EVLDQIRHDEALSNIPVVVFTGRELSAEEDAELHTMARSIVVKGVESPERLLD 1941


>gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
 gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
          Length = 1236

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 74/116 (63%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL++      D ++MDIQ+  + GL  
Sbjct: 1112 VLLVEDNFINQQVASELLKSAGYEVVIADNGQVALDVIDSKPFDAVLMDIQMPVMDGLTA 1171

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T ++++    Q++P+IA+TA AM GD+E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1172 TAELRKRYSKQQMPIIAMTAHAMSGDKEKSLAAGMNAHITKPIVLTELFETLSHWI 1227



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 61/115 (53%), Gaps = 4/115 (3%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++V+DN   ++++  L+    +      +G +AL++ R+   D++++D  + E++G ++ 
Sbjct: 970  LVVDDNPSALQIYSTLMTDFSFGVNTADSGQKALDILRKKPVDLLLLDWMMPEMNGCDVI 1029

Query: 66   KQIKE---DSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            K I E   D  + + P+I + TA+A +  +  ++K    A + KP   S   + I
Sbjct: 1030 KAIDEMVADGSIAKRPIIILMTAYAAEPLDHELQKNSVYAVLQKPFKASALFDEI 1084


>gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 229

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G EAL++  +   D+ ++D+ L  I G
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++  +++ +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 61  LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|189910583|ref|YP_001962138.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775259|gb|ABZ93560.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 812

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++I +D+ +N+K+ +  ++  GY+AL   NG + LE+  +  PD+I++D+Q+ +I G+
Sbjct: 690 AKILIADDDSINLKVSKMFLKKLGYVALIAENGEKTLEVVEKENPDLILLDVQMPDIDGI 749

Query: 63  EITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           ++TKQI+++  L+  P +IA+TA  M+ ++E     G + +++KP+ +   +  IKK+
Sbjct: 750 QVTKQIRKNKNLKRQPIIIALTANVMEEEKENCLSSGMDDFMTKPLLMQDLVYMIKKW 807


>gi|153876951|ref|ZP_02004011.1| response regulator receiver protein [Beggiatoa sp. PS]
 gi|152066585|gb|EDN65989.1| response regulator receiver protein [Beggiatoa sp. PS]
          Length = 144

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+D+  N++L   ++    Y  L    G  A+E+    KPD+I++D+ + +++G
Sbjct: 1   MTTILIVDDSSENIELLMAVLNNIDYKFLTATTGKSAIEIVLSQKPDLILLDVVMPDMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   +K +   + IP+I +TA   + DE +  + G   YI+KP   +I    +K ++
Sbjct: 61  YEVCTILKANLTTKRIPIIFITAKDDEDDESKGFEVGAVDYITKPFRPTIIQARVKTHL 119


>gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 224

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +    +    ++ + +      +G EALE       DVII+D+ + +++G E
Sbjct: 2   KILVVEDEKDLNNIITKHLKKNNFSVDSVFDGEEALEYLNYGDYDVIILDVMMPKMNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++ +    E  V+ +TA     ++ +    G + Y+ KP      +  I+  +  
Sbjct: 62  VVKNLRANKN--ETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR 118


>gi|312131206|ref|YP_003998546.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907752|gb|ADQ18193.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1314

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 1    MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            M   ++IVEDN        ++  ++        NG EA ++ ++  PD ++ D+ + E+ 
Sbjct: 1059 MDAHLLIVEDNADLRNYLEEIFGST-LKVSMATNGKEAWDMIQKDTPDAVLSDVMMPEMD 1117

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            GLE+  ++K   +   +P++ +TA A    E    + G + YI KP +  I    +   +
Sbjct: 1118 GLELCSKVKNHPKFAHLPIVLITARAAAVHELEGIESGADDYIVKPFNPKILFSKVTALL 1177


>gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 838

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED  +N    + ++E +GY      +G E L L  +   D I+MDI++   +GLE
Sbjct: 710 RILLAEDEAINRLAAQKMLEKAGYAVTPAGSGEEILRLLAERPFDCILMDIRMPGKNGLE 769

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +T++I+    L     IP+IAVTA+AM GD E+    G + Y+SKPI ++  ME +K+ +
Sbjct: 770 VTREIRHSPRLGPMAAIPIIAVTAYAMSGDREKFLAAGMDGYVSKPIDIAHLMEELKRIM 829


>gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   ++  + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFVNVNLMQEGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|223935713|ref|ZP_03627629.1| response regulator receiver protein [bacterium Ellin514]
 gi|223895721|gb|EEF62166.1| response regulator receiver protein [bacterium Ellin514]
          Length = 120

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D    ++L R  I + G+  +   +G +A+E+A +  PD++++D+ L  + G
Sbjct: 1   MAKILIVDDLPTEVQLMRSAIASLGHSVVVATDGEQAVEMAHRESPDLMLLDVVLPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++IK+D     I VI +++   + D+    K G  AYI KP S    ++ +KK + 
Sbjct: 61  FQVCRKIKKDPNTSNIQVILISSKTQESDKFWGLKQGANAYIFKPFSPQELVDAVKKNLR 120


>gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     ++  GY  ++  NG   LE+A + + D+I++DI L EI+G
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++++      +IP+I +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|120612634|ref|YP_972312.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120591098|gb|ABM34538.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1159

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 71/126 (56%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQL 56
            + +++VED+  N+     ++E +G      RNG EALE   + +       D+++MDI +
Sbjct: 1034 RSILVVEDDVRNIFALSSVLEPTGAKVQIARNGREALEALERSQAGDAPQVDLVLMDIMM 1093

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ G    ++I++  E + +P+IA+TA AMK D+E+    G   YI+KP+ +   +  +
Sbjct: 1094 PEMDGFTAMREIRKRQEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1153

Query: 117  KKYIGE 122
            + ++ +
Sbjct: 1154 RVWMPK 1159



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VED+    ++  DL    G+  + T +G E L  A  + P  +++D+ L + SGL
Sbjct: 766 RTILVVEDDTRFARILYDLAHEMGFQCIVTHSGGEGLAAATDYMPSAVVLDMNLPDFSGL 825

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK---- 118
            +  Q+K +   + IPV  V+   +    +     G   Y  KP+     ++ +++    
Sbjct: 826 GVLDQLKRNPATRHIPVHVVS---VADYSQEALGLGAMGYALKPVKRDELVQALQRMEAK 882

Query: 119 ---YIGE 122
               +  
Sbjct: 883 FTQALRR 889



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 50/94 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED++   +  R L+       +       AL+L R+   D ++MD+ L ++SG 
Sbjct: 888 RRVLVVEDDDRQRESMRHLLANGDVEIVGAETAQRALQLLRESTFDCMVMDLNLPDLSGY 947

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
           E+ +Q+    E+   PVI  T  ++  DEE+  +
Sbjct: 948 ELLEQMAGQEEVAFPPVIVYTGRSLSRDEEQRLR 981


>gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRSRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D+    +L    ++  GY  +   +G EAL     +    ++I+D+ +  ++GL
Sbjct: 2   KILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTNPDIALMILDVMMPNMNGL 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K +++DS    IP++ ++A +   D+ +    G + Y++KP +    M  ++  +  
Sbjct: 62  EVVKTVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 123 A 123
           A
Sbjct: 119 A 119


>gi|326318684|ref|YP_004236356.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323375520|gb|ADX47789.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1160

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 71/126 (56%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQL 56
            + +++VED+  N+     ++E +G      RNG EALE   + +       D+++MDI +
Sbjct: 1035 RSILVVEDDVRNIFALSSVLEPTGAKVQIARNGREALEALERSQSGDAPQVDLVLMDIMM 1094

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ G    ++I++  E + +P+IA+TA AMK D+E+    G   YI+KP+ +   +  +
Sbjct: 1095 PEMDGFTAMREIRKRQEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1154

Query: 117  KKYIGE 122
            + ++ +
Sbjct: 1155 RVWMPK 1160



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VED+    ++  DL    G+  + T +G E L  A  + P  +++D+ L + SGL
Sbjct: 767 RTILVVEDDTRFARILYDLAHEMGFQCIVTHSGGEGLAAATDYMPSAVVLDMNLPDFSGL 826

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK---- 118
            +  Q+K +   + IPV  V+   +    +     G   Y  KP+     ++ +++    
Sbjct: 827 GVLDQLKRNPATRHIPVHVVS---VADYSQEALGLGAMGYALKPVKRDELVQALQRMEAK 883

Query: 119 ---YIGE 122
               +  
Sbjct: 884 FTQALRR 890



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 50/94 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED++   +  R L+       +       AL+L R+   D ++MD+ L ++SG 
Sbjct: 889 RRVLVVEDDDRQRESMRHLLANGDVEIVGAETAQRALQLLRESTFDCMVMDLNLPDLSGY 948

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
           E+ +Q+    E+   PVI  T  ++  DEE+  +
Sbjct: 949 ELLEQMAGQEEVAFPPVIVYTGRSLSRDEEQRLR 982


>gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 230

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+V+D+E    L R ++E +GY      +G E L L    KPD++++D+ +  ++G ++ 
Sbjct: 1   MLVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEKPDLLLLDVMMPGMNGFDVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++++E  E + IP++ ++A     D+    K G + Y+ KP S    +  I+ ++  
Sbjct: 61  RRMRE--EGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRR 115


>gi|261879166|ref|ZP_06005593.1| response regulator PhoB [Prevotella bergensis DSM 17361]
 gi|270334265|gb|EFA45051.1| response regulator PhoB [Prevotella bergensis DSM 17361]
          Length = 231

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +   ++ +  +ET GY   +  +  EALE+      D++++D+ +  +SG  +
Sbjct: 10  ILVVDDEDDLCEILKFNLETEGYHVEKANSAEEALEM-DLPAFDLLLLDVMMGGMSGFAM 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++K +     IP+I +TA   + D       G + YISKP S+   +  ++  I  
Sbjct: 69  AQKLKANPATANIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRVRAVIRR 126


>gi|300022156|ref|YP_003754767.1| response regulator receiver protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523977|gb|ADJ22446.1| response regulator receiver protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 144

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 84/119 (70%), Positives = 103/119 (86%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVEDNELNMKLF DL+   GY  +QTRNG EALELAR+H+PD+I+MDIQL E+SGLE+
Sbjct: 24  VLIVEDNELNMKLFNDLLAAHGYKTIQTRNGFEALELARKHRPDLILMDIQLPEVSGLEV 83

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           TK +K+D EL  IPV+AVTAFAMKGDEERIR GGCEAY+SKPIS+  F+ET++K+IG +
Sbjct: 84  TKWLKDDDELCRIPVVAVTAFAMKGDEERIRSGGCEAYVSKPISVMTFLETVRKFIGPS 142


>gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
           Mycobacterium Tuberculosis
          Length = 230

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +S
Sbjct: 3   MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMS 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  +
Sbjct: 63  GTDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|88608688|ref|YP_506396.1| response regulator PleD [Neorickettsia sennetsu str. Miyayama]
 gi|88600857|gb|ABD46325.1| response regulator/GGDEF domain protein [Neorickettsia sennetsu
           str. Miyayama]
          Length = 456

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 62/121 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D   N+K+    +    Y  +   +G+ A+ELA+QH+PDVI++D+ + E+ 
Sbjct: 1   MTALILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAKQHQPDVILLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  +++K D     IPVI VTA     ++      G + ++ KP         IK  +
Sbjct: 61  GFETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAKDFTLFIRIKSLL 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 42  ARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGG 98
           A     DV+I++I L +   L +   IK   + + IP++A+     + DE     I + G
Sbjct: 191 AEYASFDVLIVNISLSK-DLLRLCSAIKSHLKTRSIPIMAI--VDDEDDESLITEITELG 247

Query: 99  CEAYISKPISLSIFMETIKKYIGE 122
              YI  PI+ S F+  +   +  
Sbjct: 248 INDYICVPINKSEFIARVTTQVKR 271


>gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
 gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
          Length = 1214

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
             K++I++D+  N+     ++E  G   +   NG E +E   R     +++MDI + E+ G
Sbjct: 1073 AKILIIDDDIRNVFALTSVLERHGATVVYAENGREGIEQLERNEDVALVLMDIMMPEMDG 1132

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I++  +  ++P+IA+TA  M GD E+    G   Y+ KP+ + + ++ ++ ++ 
Sbjct: 1133 WATTSAIRKMPQFADLPIIALTAKVMHGDREKSIASGASDYVPKPVDVDLLLDRLRGWLA 1192

Query: 122  EA 123
            ++
Sbjct: 1193 QS 1194


>gi|295705391|ref|YP_003598466.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803050|gb|ADF40116.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+E   +L R  ++  GY+  + ++G EA  L  +    + ++DI +    G
Sbjct: 1   MIHILLADDDEHMRQLVRHYLQLEGYVVHEAKDGEEASGLLAKQHIHLAVVDIMMPHKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+      + P+I +TA     D+E+    G + Y++KP      +  IK  + 
Sbjct: 61  YEVCEEIRS---YYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium
           kansasii ATCC 12478]
          Length = 227

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTNVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 243

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++  +D+    ++ R L+E+ GY  ++  NG +A  +A     D+II+D+ +   +G 
Sbjct: 17  RKILFADDDPEIREVVRILLESEGYQVVEAENGEQAASMADD-TFDLIILDVMMPGRNGF 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +I+        P++ +TA     D+      G + Y+SKP S +     +K  I  
Sbjct: 76  SACAEIRRRL---NTPILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIRR 132


>gi|224537028|ref|ZP_03677567.1| hypothetical protein BACCELL_01904 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521336|gb|EEF90441.1| hypothetical protein BACCELL_01904 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1345

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 3    KKV-MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K++ +IVEDN+       +      +      NG + +E A    PD+I+ DI +  ++G
Sbjct: 1090 KRIMLIVEDNQDICNYIAESFSDD-FEVKTAANGEQGMEQALNSIPDIIVSDIMMPVMNG 1148

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + + K +KED     IP+I +TA     D+E   + G ++Y++KP S ++    I   +
Sbjct: 1149 IMMCKILKEDVRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRINNLL 1207


>gi|168183919|ref|ZP_02618583.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795806|ref|YP_002863358.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672998|gb|EDT84959.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263831|gb|ACQ54864.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 235

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+     + ++ +   GY   Q  +G+EA+E  +     ++IMDI +  + G+E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+E S+   +P+I ++A     D+      G + YI KP S+   +  +K  I  A
Sbjct: 65  SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121


>gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 224

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+GL+
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|163737971|ref|ZP_02145387.1| response regulator receiver modulated serine phosphatase
           [Phaeobacter gallaeciensis BS107]
 gi|161388587|gb|EDQ12940.1| response regulator receiver modulated serine phosphatase
           [Phaeobacter gallaeciensis BS107]
          Length = 423

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D+ L  ++    ++  G+  ++  +G  A+E+     PD+I+ D  +  ++GL
Sbjct: 19  RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDPPDLILSDWMMPGMNGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119
           E  +  +  S+      I +T+ + K +  +    G + +++KP+S       I   ++ 
Sbjct: 79  EFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGERI 138

Query: 120 IG 121
           + 
Sbjct: 139 LR 140


>gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R]
 gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    ++L    ++  G+  +   +G EAL++AR+ +PD  I+D+ +  + G E
Sbjct: 15  RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGFE 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++ +      PV+ +TA             G + Y++KP SL   +  ++  +  
Sbjct: 75  LLTKLRSEGLDS--PVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 131


>gi|325262670|ref|ZP_08129406.1| regulatory protein VanR [Clostridium sp. D5]
 gi|324031764|gb|EGB93043.1| regulatory protein VanR [Clostridium sp. D5]
          Length = 238

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IV+D +    L    ++   +   +  +  EA E   + +PD+ +MD+ + EI 
Sbjct: 8   MREKILIVDDEKEIADLVECYLQNEDFTIFKYYDSREAWECIVREEPDLALMDVMMPEID 67

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +QI+E       PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 68  GFTLCRQIRERYHF---PVIMLTAKGEEIDKITGLTLGADDYIAKPFLPLEMVARVKAQL 124

Query: 121 GE 122
             
Sbjct: 125 RR 126


>gi|310826289|ref|YP_003958646.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
 gi|308738023|gb|ADO35683.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
          Length = 231

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D    +      ++  GY   +  +G EALE+  ++   +I+MDI + E+ G+  
Sbjct: 3   ILICDDEREIVDALELYLKNEGYDIFKAYSGKEALEIVSENTIHLILMDIMMPEMDGIHA 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E      IP+I ++A A   D+      G + YI+KP +    +  +K  +  
Sbjct: 63  TLKIRE---TANIPIIFLSAKAEDNDKIMGLTVGGDDYITKPFNPLEVIARVKSQLRR 117


>gi|304309732|ref|YP_003809330.1| predicted histidine kinase [gamma proteobacterium HdN1]
 gi|301795465|emb|CBL43663.1| predicted histidine kinase [gamma proteobacterium HdN1]
          Length = 920

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+DNE N +L   ++    +   +  NG  A+++ +   PD+I+MDI++ E+ G 
Sbjct: 708 RRILIVDDNENNRELLHKILLPFDFCLNEASNGQSAVQICQDWHPDLILMDIRMPEMDGH 767

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  ++I++     ++P+I +TA  + GD E+  + G   Y+SKP      +  I K +
Sbjct: 768 QAIREIRKIHSRDQLPIIVLTAGTLAGDVEKSTQEGANDYLSKPFKADDVLSRIGKQL 825


>gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 236

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M   ++++V+D     +L    +  +G+      +G+ A++L     PD++++D+ L ++
Sbjct: 1   MSEARLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVMLPDL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+T++++        PV+ +TA     D+      G + Y++KP SL   +  I+  
Sbjct: 61  DGFEVTRRLRSKDIHS--PVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAI 118

Query: 120 IGE 122
           +  
Sbjct: 119 LRR 121


>gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 248

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  A+  AR  +PD +++D+ L ++ GL 
Sbjct: 22  RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVMLPDMDGLS 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   E  ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 82  VLGRLRR--EYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 139


>gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus
           C3-41]
 gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED  +  ++    ++ SGY      +G EALEL   ++ D+II+D+ L ++ G+E
Sbjct: 2   KLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +QI+  +E  ++ ++ ++A +   D+      G   Y+ KP         I+  +  +
Sbjct: 62  VLEQIRVQNE--DVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRS 119


>gi|183220472|ref|YP_001838468.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167778894|gb|ABZ97192.1| Putative two-component response regulator; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 807

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++I +D+ +N+K+ +  ++  GY+AL   NG + LE+  +  PD+I++D+Q+ +I G+
Sbjct: 685 AKILIADDDSINLKVSKMFLKKLGYVALIAENGEKTLEVVEKENPDLILLDVQMPDIDGI 744

Query: 63  EITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           ++TKQI+++  L+  P +IA+TA  M+ ++E     G + +++KP+ +   +  IKK+
Sbjct: 745 QVTKQIRKNKNLKRQPIIIALTANVMEEEKENCLSSGMDDFMTKPLLMQDLVYMIKKW 802


>gi|260946877|ref|XP_002617736.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720]
 gi|140083809|gb|ABO84860.1| histidine kinase receptor NIK1 [Clavispora lusitaniae]
 gi|238849590|gb|EEQ39054.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720]
          Length = 1082

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N KL   ++E  G+      NG+EA E  R++K DV++MD+Q+  + G E
Sbjct: 866 KILLAEDNLVNQKLAVKILEKQGHKVHVVENGLEAFEAIRKNKYDVVLMDVQMPVMGGFE 925

Query: 64  ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M+T
Sbjct: 926 ATEKIRQWEKKSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 985

Query: 116 IKKYI 120
           I K I
Sbjct: 986 IAKCI 990


>gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 229

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++++ED E  +    D +   GY     RNG E      ++  D+II+DIQL + +
Sbjct: 1   MNEHILLIEDEEALLTTLTDRLRAEGYSVEVARNGEEGYHHGTRNVFDLIILDIQLPKRN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I++       P++ +TA     D+    K G + Y++KP  +   M  I+  +
Sbjct: 61  GFDVCRDIRQAGVA--TPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|146299834|ref|YP_001194425.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146154252|gb|ABQ05106.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 1373

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K V+++EDNE  +    D++    Y  L+  +G+ ALE   +  PD+I+ D+ + E+ G 
Sbjct: 1124 KTVLVIEDNEEVLSFVYDIL-YHDYRVLKFTDGIHALEYMEKEIPDLIVTDVMMPEMDGF 1182

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   +K +     IPVI +TA +   +       G +AYISKP S+     TI   +
Sbjct: 1183 ELCTILKTNQNTNHIPVILLTAKSSTLNRIEGLSTGADAYISKPFSIEELKLTIANLL 1240


>gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I +D+   +K+    +E  GY  +  ++G +A++LA   KPD++IMDI + ++ GLE
Sbjct: 5   TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++IK      ++P+I ++A     D+    K G + Y +KP S +     +K  +  +
Sbjct: 65  ASQKIK---MKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRS 121


>gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 951

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+ V+DN  N+KL   L+E+ G       +G EA++LA     D++ MDIQ+  + G+  
Sbjct: 669 VLAVDDNPANLKLIVTLLESLGVEVTSASSGEEAVKLATDTVFDLVFMDIQMPSMDGMAA 728

Query: 65  TKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T+QI + +   + +P+IA+TA A+  + E + + G + Y++KPI       T+ K+ G
Sbjct: 729 TRQIRRAEPSNRHVPIIALTAHALAEEREAMLEAGMDDYLAKPIDEDQLQRTLFKWTG 786



 Score = 37.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGM---EALELARQHKPDVIIMDIQLQEISGLE 63
           +VE  E+    ++  IE  G +A +  +     E+L+   Q+   + I+D+  QE +  E
Sbjct: 530 VVEPREMTRLAYQHQIEGWGAVAREFESAAALAESLQSGNQYGVTLAILDVSSQEHN-DE 588

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + I         P + + A A   +    + + G   Y+++P       + + K I
Sbjct: 589 LYRTILTIDRELSCPTLVI-ANANDENINAHLLEQGAHYYLTRPFRSGELYQALLKLI 645


>gi|313157579|gb|EFR56995.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 849

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDN       R  +E   Y     RNG EA   A   +PD+++ DI +  +SG+E+
Sbjct: 579 ILVAEDNTALRDYLRSALENR-YNVSTARNGEEAYCQAINEQPDLVLTDIVMPGMSGIEL 637

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++IKE+S    I VI +TA  ++  E    + G +AY++KP SL +    I   +  
Sbjct: 638 CRKIKENSRTSAIGVILLTAHNLQNYEVSGYRVGADAYVAKPFSLEVLFSRIDNLVAR 695


>gi|301057759|ref|ZP_07198828.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300448070|gb|EFK11766.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 438

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 20/139 (14%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQL 56
           M +  ++++VEDN +N KL + +++ +GY      NG EA+E+  A Q+  D+I MD+Q+
Sbjct: 296 MKRSVRILLVEDNPVNQKLAKMMLKKAGYQVQVANNGKEAVEMLMASQNGFDLIFMDVQM 355

Query: 57  QEISGLEITKQIKEDSE----------------LQEIPVIAVTAFAMKGDEERIRKGGCE 100
            E+ GL  T++I+   +                 + IP+IA+TA AMKGD+E     G +
Sbjct: 356 PEMDGLTATREIRRLEKEHVLRPPRGRDFHPLTRRRIPIIAMTAHAMKGDQETCMDAGMD 415

Query: 101 AYISKPISLSIFMETIKKY 119
            Y++KPI   +    ++K+
Sbjct: 416 DYVAKPIKRDVVFSVVEKW 434



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 70/132 (53%), Gaps = 14/132 (10%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
           KK ++V+DNE N+K+    +E  G   +    GM+ L L       Q   D+ I DIQ+ 
Sbjct: 140 KKALLVDDNETNLKILARYLEPVGMRLVLLDKGMDVLPLLEKSIDEQDPFDICIADIQMP 199

Query: 58  EISGLEITKQIK--EDSE------LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109
           ++SG E+ +QI+  E         ++ +P++A+++  M+ D +R  + G + +++KP+  
Sbjct: 200 DMSGYEVARQIRLFESPHARLRMSIRSLPLMALSSM-MERDAKRCGEVGFDGFLAKPVRR 258

Query: 110 SIFMETIKKYIG 121
                 +++ +G
Sbjct: 259 ERLYRMLERILG 270


>gi|258611893|ref|ZP_05242924.2| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293596316|ref|ZP_05230458.2| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|293597011|ref|ZP_05266512.2| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300765250|ref|ZP_07075235.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|258606949|gb|EEW19557.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584711|gb|EFF96743.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293594699|gb|EFG02460.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514071|gb|EFK41133.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 233

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + E++
Sbjct: 3   MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++++  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 63  GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|190892751|ref|YP_001979293.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190698030|gb|ACE92115.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
 gi|327188375|gb|EGE55592.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 233

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D+     L    +  +G+      +G EA         D+IIMD+ +   SG+
Sbjct: 12  AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++T+ ++    ++ +P+I +TA A  G+     + G + Y+SKP      +  I   +  
Sbjct: 72  DVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|192361562|ref|YP_001984105.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190687727|gb|ACE85405.1| hipothetical sensory box/GGDEF family protein [Cellvibrio japonicus
           Ueda107]
          Length = 688

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D   N+ +   ++E  G   L   +G  ALELA +  PD++++D+ + +++G 
Sbjct: 79  ARILLVDDTPENLDILSAILEDLGCQLLVATSGERALELATRRLPDLVLLDVMMPDMNGF 138

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+  ++K D    EIP++ VTA     D  +  + G   YI+KPI+       +K  +  
Sbjct: 139 EVCTRLKADLATTEIPIVFVTART--EDISQGFQVGGADYITKPINADEVRARVKYQLER 196


>gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 224

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+GL+
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|86358612|ref|YP_470504.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86282714|gb|ABC91777.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 233

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D+     L    +  +G+      +G EA         D+IIMD+ +   SG+
Sbjct: 12  AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++T+ ++    ++ +P+I +TA A  G+     + G + Y+SKP      +  I   +  
Sbjct: 72  DVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B]
 gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 241

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLVEQGFQVRAAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      +P+I +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQTG--SPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|330863190|emb|CBX73317.1| signal transduction histidine-protein kinase baeS [Yersinia
           enterocolitica W22703]
          Length = 670

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVED     +L  D ++ +GY      NG E +   RQ  P +I++D+ L    G+ 
Sbjct: 474 TVLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGIS 533

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+      ++P++ VTA   + D     + G + YI KP S    +  +K  +  
Sbjct: 534 ICREIR---RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 589


>gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 319

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IP+I +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPIIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|284054063|ref|ZP_06384273.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 232

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 65/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+DNE+N  L    ++  GY  L   NG EAL++ R    D++++DI + +++G ++
Sbjct: 8   VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPLDLVLLDIMMPQMNGYQV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K D +L+ IPVI ++A        R  + G E Y+SKP +  +    I   +
Sbjct: 68  LESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACL 123


>gi|260172966|ref|ZP_05759378.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2]
 gi|315921245|ref|ZP_07917485.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695120|gb|EFS31955.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1355

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VED++   +    L+    YI  +  NG E L+ A +  PD+I+ D+ +  + GLE
Sbjct: 1107 RVLVVEDDDDMRQYIVSLLSQQ-YIVYEASNGKEGLKEAVEQIPDLIVSDVMMPVMDGLE 1165

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K IKE+     IPV+ +TA A+    E       + Y+ KP +  + +  +   I
Sbjct: 1166 LCKAIKEEMITAHIPVVLLTAKALNEHIEEGYSVMADDYVLKPFAPKVLLAKLDSLI 1222


>gi|218779449|ref|YP_002430767.1| response regulator receiver protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760833|gb|ACL03299.1| Response regulator receiver domain protein (CheY-like)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 122

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 47/118 (39%), Positives = 79/118 (66%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+I+EDNE N+ L   L+E SGY     R+G +   +A   +PDVI++DIQL  + G 
Sbjct: 4   KKVLIIEDNEQNLYLITYLLENSGYEVTPARDGAQGCAMAEVVQPDVILLDIQLPGMDGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +++   ++E P++AVT++AM GD+E+    GC  YI KPI  ++F++ +++++
Sbjct: 64  EVAKALRKKPLVKETPIVAVTSYAMPGDKEKALSAGCTGYIEKPIDPAVFIDQLEEHL 121


>gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22]
 gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22]
          Length = 1793

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1673 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1732

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P+IA+TA AMKGD E+    G   Y++KP+     +  +++++ 
Sbjct: 1733 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVDPDHLLGVMEQWMR 1791


>gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
          Length = 232

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++VED     +  +  +   GY       G + L  A   K D+II+D+ L  +SG
Sbjct: 1   MKEILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKYDLIILDLMLPNLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EI ++++ +      P+I +TA +   D+      G + Y++KP ++   +  I+K + 
Sbjct: 61  IEICRRLRANKIT--TPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILS 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 225

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     +L ++ +E  G++A    +G E L +A     DVI++DI L +++G +
Sbjct: 2   KILIVEDERSLGRLLKESLEREGFVAELAVDGEEGLYMALNGPFDVIVLDILLPKLTGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+       IPV+ +TA     D+ R    G + Y+ KP  +   +  I+  +  A
Sbjct: 62  VLEKIR--DSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLLRRA 119


>gi|294627710|ref|ZP_06706292.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664634|ref|ZP_06729971.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292598062|gb|EFF42217.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605594|gb|EFF48908.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 238

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+IV+D     +     +   GY  LQ   G E L L      +++++DI L +  G 
Sbjct: 11  ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGH 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+  +I++      +PVI +T  A + ++      G   Y++KP  +   M  I+  + +
Sbjct: 71  EVLHEIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127

Query: 123 A 123
           A
Sbjct: 128 A 128


>gi|282880384|ref|ZP_06289095.1| response regulator receiver domain protein [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305740|gb|EFA97789.1| response regulator receiver domain protein [Prevotella timonensis
           CRIS 5C-B1]
          Length = 231

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +   ++ +  +ET GY      +  EA+ +      +++++D+ +  +SG  
Sbjct: 7   RILVVDDEQDLCEILKFNLETEGYAVDTANSAEEAMNM-ELTSYNLLLLDVMMGAMSGFA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K++KE+S    IP+I +TA   + D       G + YISKP S+   +  I+  I  
Sbjct: 66  MAKKLKEESATAHIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRR 124


>gi|225012590|ref|ZP_03703025.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-2A]
 gi|225003123|gb|EEG41098.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-2A]
          Length = 230

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D    +++ R  +E  GY      +G+EAL++A +  P +II+D+ +  ++G+E
Sbjct: 7   KILLVDDEPDIIEIVRYNLEQVGYQIFSASDGLEALKVADKELPHLIILDVMMPNLNGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++++D       ++ +TA             G + Y++KPI   + +  +K  +  
Sbjct: 67  TCEKLRQDDRFLNTIIMFLTARGEDYSFVAAFDVGADDYVTKPIKPKVLVSKVKGLLRR 125


>gi|168069753|ref|XP_001786566.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660993|gb|EDQ48622.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 717

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 3/124 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
             V++V+D+ +N+++ R+L+   GY  +   NG EALE  +  +  D++I D  +  +SG
Sbjct: 400 ATVLMVDDDPVNLQVLRNLLALEGYRLMTASNGQEALEKIQSGQSIDLVIADWMMPGMSG 459

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-- 119
           L++ + ++    L  +P++ +TA ++  D       G   ++ KP+        ++    
Sbjct: 460 LDLCRSVRRQFSLSALPILLLTARSLPEDVRIGLSAGANDFLRKPVDAEELRARVRTLLE 519

Query: 120 IGEA 123
           +  +
Sbjct: 520 LRRS 523


>gi|158520639|ref|YP_001528509.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158509465|gb|ABW66432.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 240

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++I+ED     +  +  +   GY  +   NG   L   + H PD+I++DI L  + GL
Sbjct: 7   KQILIIEDEAHIAQGLQLNLSLKGYDVMVAENGSRGLAAWKAHNPDLIVLDIMLPGMDGL 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I+ + E  +IP++ ++A     D+ +    G + Y++KP  L  F+  + + +  
Sbjct: 67  SVLQHIRLEDE--KIPILILSAKKEPIDKRKGLTYGVDDYLTKPFDLEEFLLRVDRLLTR 124

Query: 123 A 123
           A
Sbjct: 125 A 125


>gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 223

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +      +  +E   +      NG E L +A  +  D+I+MDI L +  GL 
Sbjct: 2   KILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIMLPKKDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++        PV+ +TA     D       G + Y++KP + +  +  +K  +  
Sbjct: 62  VIKELRSKEVT--TPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRR 118


>gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
 gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
          Length = 1692

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 68/116 (58%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N+K+   ++   GY A   RNG+E L        D++ MD+Q+ ++ GLE
Sbjct: 1461 RILVAEDNPVNLKVVLMMLSHLGYRADSARNGLEVLSALEHRDYDLVFMDVQMPDMDGLE 1520

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
              ++I++    +   ++A+TA+A++GD +R    G + YISKP+++      I+  
Sbjct: 1521 AARRIRDMKGYEGPRIVAITAYALEGDRDRCIAAGMDDYISKPVTMEKLKAAIENV 1576


>gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator
           [Actinomyces oris K20]
          Length = 219

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IVED    +      ++ +G+    T  G +A+ LA Q   D+II+D+ L +I G
Sbjct: 1   MSRILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++        PVI +TA +   D     +GG + Y+ KP S    +  I+  + 
Sbjct: 61  FEVLQQLRGQGVGA--PVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118


>gi|306826271|ref|ZP_07459605.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431547|gb|EFM34529.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 232

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + +    +  +GY  L   +G E LEL R+   D+II DI +  + 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   +++  +  Q  P +  TA   + D+      G + +I KP S    +  +   +
Sbjct: 61  GYDFISEVQYIAPAQ--PFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|160899786|ref|YP_001565368.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160365370|gb|ABX36983.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1287

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++  +DN         L+E   Y      +G  AL    + +PD+++ D+ +  + G 
Sbjct: 655 ARIVCADDNADMRSYIGQLLEPL-YEVEIVGDGRAALASIHRQRPDLVLADVMMPVLDGF 713

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+   ++ D   + IPVI ++A A +  +    + G + Y+ KP S    +  I   +
Sbjct: 714 ELLHALRSDETTRAIPVIMLSARAGQEAQVEGLRAGADDYLVKPFSARELLARIASLL 771



 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++V+DN         L+   G      R+G  AL +    +P+V+++DI L  + GLE
Sbjct: 1168 RILVVDDNIDAADTLAMLLRLLGAEVEIARDGPGALAMHAAFRPEVVLLDIGLPGMDGLE 1227

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++I+ +    ++ +IA+T +  + D  R R+ G + ++ KP+S     E +   + 
Sbjct: 1228 VARRIRAEHGRDQVVLIALTGWGQEEDLRRSREAGMDHHLVKPVSFDTL-ERLLAGLR 1284


>gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 227

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED E   ++ +  +E  GY +   + G EA+E       D+I++D+ L  IS
Sbjct: 1   MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+  + +  IP+I +TA     D+      G   YI+KP  +   +  I+  +
Sbjct: 61  GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|315304579|ref|ZP_07874825.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
 gi|313627057|gb|EFR95944.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
          Length = 231

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY      +G E   L ++ +P ++I+DI + E+ 
Sbjct: 1   MTTSILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++ +  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 61  GLEVCRLMRSEGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|309790317|ref|ZP_07684884.1| response regulator receiver protein [Oscillochloris trichoides DG6]
 gi|308227651|gb|EFO81312.1| response regulator receiver protein [Oscillochloris trichoides DG6]
          Length = 126

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 75/122 (61%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+E   ++    +  SG+      +G++AL   R  +P++IIMD+ + +++G
Sbjct: 1   MPRILVVEDDETIREMVATYLRLSGFTVELAVDGIDALTKVRSVQPELIIMDMGIPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T++++   E  + P+IA+TA+A++ D ER    GC+A+ SKPI  +  +E I+  + 
Sbjct: 61  WQTTQRLRARKETAQTPIIALTAYALEEDRERAFNVGCDAFESKPIDFTSLIEKIQTLLA 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E        L+   G+  +   +G  AL    +   D++++D+ L  + G
Sbjct: 1   MTRVLIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLMLPGMGG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S       I+  + 
Sbjct: 61  NDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++I++D+E    L    +E  G+ AL+  N +  L L  + + D+II+DI + +++
Sbjct: 1   MKDRILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEVDLIILDIMMPQMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E   +I+E+   + +P+I ++A +   D+      G + Y++KP +    +  +K  I
Sbjct: 61  GIEAAFKIREE---KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254419790|ref|ZP_05033514.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196185967|gb|EDX80943.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 238

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+     L  + +E  G+  ++  +G            D++++D+ L +  GL + 
Sbjct: 11  LVVDDDRDIRNLLSEHLEQHGFRTVKAADGRAMRAALEAGPVDLVVLDLNLPDEDGLSLC 70

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + I+        PVI +TA     D     + G + Y++KP      +  I+  +  A
Sbjct: 71  RAIRA---TSRTPVIMLTARGDPIDRIVGLEMGADDYMAKPFEPRELVARIRTVLRRA 125


>gi|157373328|ref|YP_001471928.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
 gi|157315702|gb|ABV34800.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
          Length = 120

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 66/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++ V+D+    ++    ++T+G+   +  NG EAL++A++ + D++I D+ +  + G
Sbjct: 1   MKRILAVDDSASMRQMVGFTLKTAGFDVTEASNGDEALKVAQKGEYDLVISDVNMPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++     +  P++ +T  +    ++  R  G   +I KP +    + T++K +G
Sbjct: 61  LTLIRNLRTLPAYKFTPLLMLTTESGTDKKQEGRSAGATGWIVKPFNPDQLLATVRKVLG 120


>gi|83945804|ref|ZP_00958147.1| two-component system response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850807|gb|EAP88669.1| two-component system response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 234

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + +V+D+E  +      +E  GY      +G  AL    +  PD+ I DI++  + G
Sbjct: 1   MATIALVDDDENILTSVSMFLENEGYNVRTFTDGSAALPHLTETPPDLAIFDIKMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++ S    +PVI +T+   + DE      G + YI+KP S  +    IK  + 
Sbjct: 61  LELLRRVRQSS---NLPVIFLTSKDGEFDEALGLDLGADDYIAKPFSHQLLARRIKAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 229

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D++  ++L    I   GY  L   +G EAL     +   +++I+D+ + E+ G+
Sbjct: 2   KILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDGM 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ KQ+++DS   +IP++ ++A     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  EVIKQVRKDS---DIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118


>gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   +      +   G+      +G  A++ A   +PD++++D+ L    GL
Sbjct: 20  RRVLVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEAWQPDLLVLDVMLPGFDGL 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 80  EVCRRVQAR---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136


>gi|299147659|ref|ZP_07040723.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298514446|gb|EFI38331.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1343

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+       D+++TS Y      NG +AL + R+  PD++I DI + E+SG 
Sbjct: 1078 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1136

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   IK D E+  IPV+ +TA   + +     + G +AYI++P S+ I   TIK  +  
Sbjct: 1137 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITRPFSVGILKATIKNLLAN 1196

Query: 122  EA 123
             A
Sbjct: 1197 RA 1198


>gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 228

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED +    L R  +E +GY  L   +G   L + R +  D++I DI L ++ G
Sbjct: 1   MYSILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+       IP++ +TA     D+      G + Y+ KP         I+  + 
Sbjct: 61  FELCKEIRA--ANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 226

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      +G +AL+       D+I++DI +  I 
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|158338315|ref|YP_001519492.1| diguanylate cyclase/phosphodiesterase with response regulator
           [Acaryochloris marina MBIC11017]
 gi|158308556|gb|ABW30173.1| diguanylate cyclase/phosphodiesterase with response regulator,
           putative [Acaryochloris marina MBIC11017]
          Length = 636

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++    +   GY      NG  AL  AR   PD+I++DI++ E+ G  +
Sbjct: 23  ILIVDDTPHNLQILSTALTKQGYQVRGAANGSMALIGARNIMPDLILLDIKMPEMDGYTV 82

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K ++  Q+IPVI ++A     D+ +    G   YI+KP  L+  +  ++  +
Sbjct: 83  CERLKSEALTQDIPVIFISALDDALDKVKAFTVGGVDYITKPFQLAEILARVENQL 138


>gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 228

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IVEDNE  +   ++ +   GY      +  +A ++  +   D +++D+ L  I+G E
Sbjct: 7   KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             + ++E   L  +P++ +TA     D+ R    G + Y++KP      +  IK  I  +
Sbjct: 67  FVEHLRES--LINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRS 124


>gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 247

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  AL  AR+ +PD +I+DI L ++ GL 
Sbjct: 23  RVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGLS 82

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +I+   EL ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 83  LLGRIRR--ELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 140


>gi|325660770|ref|ZP_08149398.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085492|ref|ZP_08334577.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472844|gb|EGC76054.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407730|gb|EGG87228.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 219

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D    +++ R  +E  G+I    ++G E +      + D+I++D+ +  I G
Sbjct: 1   MAKILAVDDEAKILQIIRKALEKDGHIVQTVQDG-EVVRQMELSRYDLILLDVMMPGIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+E     + P++ +TA  ++ D       G + YI KP  L      ++ ++ 
Sbjct: 60  FTLCREIRE---TVDCPIVFLTAKTLEEDLMAGLGSGADDYICKPFGLGELRARVQAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1624

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 66/117 (56%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDNELN  +  +L+  +G+I     +G  AL+     + DV++MD+Q+  + G   
Sbjct: 1269 VLLVEDNELNQLVAVELLRGAGFIVDVAAHGQAALDCVAHTEYDVVLMDMQMPVMDGETA 1328

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T++++ D     +P+IA+TA AM+ D  R  + G   ++ KPI   +    + +++ 
Sbjct: 1329 TRRLRTDPRHARLPIIAMTANAMEADRRRCFEAGMNDHVPKPIEPGMLWRALARWVR 1385



 Score =  100 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
            +V+IV+DN     +  +++   G+   ++  G +AL++ R          ++++D ++  
Sbjct: 1120 RVLIVDDNHTAAAVLSEMLRNMGFETRESHAGAQALDMLRDAAADGEPYGLLLIDWRMPG 1179

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            + G+E+ ++I E    Q   ++ VTA+         R+ G E  + KP+S S+  +T+ +
Sbjct: 1180 MDGIELARRIHELGLDQAPQMLMVTAYGRDEIMPAAREQGIETVLVKPVSASLLYDTLAQ 1239


>gi|302556930|ref|ZP_07309272.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302474548|gb|EFL37641.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1334

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++V+D+  N+     ++E  G+  L   NG + +E    +    +++MD+ + E+ G
Sbjct: 1214 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRKGIERLVDNPEVALVLMDVMMPELDG 1273

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               T +I+   +  ++P++AVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1274 YAATAEIRSMPQYADLPIVAVTAKAMPGDREKSIASGASDYVTKPVDTQDLIACVRRWL 1332



 Score = 41.3 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 28   IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK---QIKEDSELQEIPVIAVTA 84
              +      EA           +++++ + E    E+ +    ++ DS L  +PV+  + 
Sbjct: 1088 DIITAVGAQEAAGALATESCHCVVLELGMAEE---EVARFLEALRGDSALASVPVLVHSG 1144

Query: 85   F---AMKGDEERIRKGG-CEAYISKPISLSIFMETIKKYI 120
                    ++ R R  G    ++S   SL    E I  ++
Sbjct: 1145 HRADTAVEEDLRSRARGTALEFLS---SLDELRERIALHL 1181


>gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 959

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+E ++   + ++   G       +G EAL +  +   D+++MDIQ+  + G+E
Sbjct: 836 RILLVEDDEFSLFAGKRMLHKMGCSVTTAPDGREALAILHEQDFDLVLMDIQMPVMDGVE 895

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK I+  S+L     IP+IA+TA+AM GD+E     G + YISKP+        +++ I
Sbjct: 896 ATKAIRGSSDLGEKSHIPIIAMTAYAMTGDKELFLAAGMDGYISKPVERDELKVVVERAI 955


>gi|224540428|ref|ZP_03680967.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224517942|gb|EEF87047.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1369

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VED++         +E   Y  ++  NG++  + A Q  PD+++ DI + + +GLE+
Sbjct: 1116 VLLVEDDKDVRDYLHKSLEND-YEIIEAANGVKGYDKAVQFFPDLVLSDIMMPKRNGLEL 1174

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               IK D  +  IPVI +TA +M        + G + Y+ KP S+ +    I+  +
Sbjct: 1175 CSMIKNDIRIGHIPVILMTARSMVMHIREGFEAGADDYVIKPFSMDVLRIRIQSLL 1230


>gi|77460432|ref|YP_349939.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384435|gb|ABA75948.1| putative two-component sensor kinase and response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 633

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 69/118 (58%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VEDN +N  +   ++ + G+      +G++A+  A  ++ + I+MD +L  I G 
Sbjct: 515 RNVLLVEDNPVNQTVIEAMLRSLGFTVSVATDGVQAVRSAGDNRFEAILMDCRLPLIDGY 574

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I++     ++P+IA+TA A++GD E     G   Y++KP   +   + +++++
Sbjct: 575 EATRRIRQLPGCGQVPIIALTANALQGDRENCLAAGMNDYLAKPFKHNDLQQILQRWV 632


>gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3
 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155]
          Length = 228

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1236

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL++      D ++MDIQ+  + GL  
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTA 1173

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E      +P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1174 ARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWI 1229



 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  L+    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 968  RTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGGD 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  + + P +I +TA+A +  +  +      A + KP   S   + I
Sbjct: 1028 VISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084


>gi|325478465|gb|EGC81579.1| putative transcriptional activator protein CopR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 223

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IVED    ++L ++ ++  GY+    ++G EAL+LA     D+II+DI L +  G E
Sbjct: 2   KVLIVEDERKLLRLLKEGLDLLGYVTDVAKDGEEALDLAYVECYDIIILDINLPKKDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I++ +  +E+ +I +TA +   D  +    G   Y++KP  L      ++  +  
Sbjct: 62  VLRDIRQFN--KEVNIIMLTARSDIDDRVKGLDCGANDYMTKPFDLKELDARMRSLLRR 118


>gi|317407497|gb|EFV87452.1| winged helix family Two component transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 195

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+++ED+   +      +   GYI     +G+    +A +   D+I++D+ L  + G +
Sbjct: 67  RVLVIEDDPDILANITHHLTRRGYIVDCAEDGLRGYAMAAEGGFDLIVLDLMLPRLDGYD 126

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++        P+I VTA     +       G + Y+ KP +L+     +K  +  A
Sbjct: 127 LCRQLRA-EAGCGTPIIIVTARDTLDNRLAGFDAGADDYLVKPFALAELAARVKALLHRA 185


>gi|162453232|ref|YP_001615599.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161163814|emb|CAN95119.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 376

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+DNE N  L +  +E  GY  +    G E ++    HKPD +++D+++  + G  
Sbjct: 9   RVLVVDDNEQNRALAQATLEDDGYEVVLAVTGEEGIQQFELHKPDCVLLDVRMPGMDGFA 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  +I+   E    P++ +TA       +   + G + +++KPI  S  +  ++  + 
Sbjct: 69  VCSRIRGLPEGASTPIVFLTALRDVDTFDSALRAGGDDFLTKPIRPSELLVRVQAALR 126


>gi|114568628|ref|YP_755308.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339090|gb|ABI64370.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 236

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + +V+D+E  +      +E  GY      +G  AL    +  PD+ I DI++  + G
Sbjct: 1   MATIALVDDDENIITSVSIFLEGEGYNVRTYNDGASALTALAEDPPDLGIFDIKMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++++ S    +PVI +T+   + DE      G + YI+KP S  +  E +K  + 
Sbjct: 61  LELLRRLRQSS---NLPVIFLTSKDDEFDEALGLNLGADDYIAKPFSQRLLGERVKAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|323135689|ref|ZP_08070772.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322398780|gb|EFY01299.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 247

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 55/110 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +E  GY      NG EA     +  PD++I+D  L  +SGLE
Sbjct: 19  RILVVEDEASLALLLTYNLEAEGYQVEHVDNGDEAELRIAETPPDLVILDWMLPGVSGLE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
           I ++++     +++P+I +TA   + +  R    G + Y+ KP S    M
Sbjct: 79  ICRRLRAREACRDMPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELM 128


>gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IVED E        L+   G+  +   +G  AL    +   D++++D+ L  + G
Sbjct: 1   MTRVLIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGADIVLLDLMLPGMGG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S       I+  + 
Sbjct: 61  NDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 242

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+IVED+    +L R  +   GY      +G   L    +   D +++D+ L  + GL
Sbjct: 5   KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNWDALVLDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++ +  +     P+I ++A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICRRARAMARY--TPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRR 122


>gi|325103127|ref|YP_004272781.1| transcriptional regulator, Crp/Fnr family [Pedobacter saltans DSM
           12145]
 gi|324971975|gb|ADY50959.1| transcriptional regulator, Crp/Fnr family [Pedobacter saltans DSM
           12145]
          Length = 349

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 64/120 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I+EDN    +   +++E +GY  L   NG   +E+A+ + PD+II DI + E+ 
Sbjct: 1   MKNKILIIEDNLDIREGTAEILELAGYEVLTAPNGKAGVEMAQNNLPDLIICDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  +   + ++ +   IP I +TA A + D  +  + G + Y++KP      +  I+  +
Sbjct: 61  GYGVLYLLGKNPDTASIPFIFLTAKAERIDLRKGMEMGADDYLTKPFDDIELLNAIESRL 120


>gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
 gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
          Length = 1620

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 72/118 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             KV++VEDN +N ++ R+L+  +G       NG  A+E+ ++ + D ++MD Q+  + G 
Sbjct: 1134 AKVLLVEDNAINQEVARELLARNGVRTKVADNGRTAMEMLQKERFDGVLMDCQMPVMDGY 1193

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T++I+     +++P+IA+TA  M GD+E+    G  A+I KPI+     +T+ ++I
Sbjct: 1194 EATRKIRAMGGFEDLPIIAMTANVMAGDKEKCLACGMNAHIGKPINFKELSQTLGRWI 1251



 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 20/132 (15%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA----RQHKPDVIIMDIQLQEI 59
             V++V+DN     +F  ++   G+ A    +G EAL L     ++   D+ I+D  L ++
Sbjct: 984  HVLVVDDNSAARDIFLGMLTRFGFQAEAAASGKEALALLEEKGQERPYDMAIIDWVLPDM 1043

Query: 60   SGLEITKQIKEDSELQEIP--VIAVT-------AFAMKGDEERIRKGGCEAYISKPISLS 110
            SG E+ + +++  ++   P  ++A T       A   + D E          + KP   S
Sbjct: 1044 SGRELCQALRDAPKIDPKPKIILAATHGRPTLKALTEELDTE-------NTVLHKPFMPS 1096

Query: 111  IFMETIKKYIGE 122
                 I   +G 
Sbjct: 1097 SLFNAIMDAMGR 1108


>gi|302205664|gb|ADL10006.1| Putative sensor kinase [Corynebacterium pseudotuberculosis C231]
 gi|308275899|gb|ADO25798.1| Putative sensor kinase [Corynebacterium pseudotuberculosis I19]
          Length = 232

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 63/113 (55%), Gaps = 3/113 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D+    ++   ++E  G+  +   +G  A+E   + +PD++++D+ L  ++
Sbjct: 8   MPQKILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMN 67

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
           G++I + I+++S    +P++ +TA     D     + G + YI+KP      +
Sbjct: 68  GIDICRLIRQNS---TVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELI 117


>gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 1778

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1658 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDGY 1717

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P+IA+TA AMKGD E+    G   Y++KP+     +  +++++ 
Sbjct: 1718 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIGSGASDYVTKPVDPDHLLSVMEQWMR 1776


>gi|226325933|ref|ZP_03801451.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
 gi|225205475|gb|EEG87829.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
          Length = 232

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D++  ++     +   GY  L+  +G EA+++ ++++ D++IMD+ +  + G
Sbjct: 1   MAKILVCDDDKDIVEAIDIYLTQEGYEVLKAYDGDEAIKVLKRNEVDLLIMDVMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E+     +P+I ++A +   D+      G + Y++KP +    +  +K  + 
Sbjct: 61  IRATLKIREN---MSLPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|209522707|ref|ZP_03271265.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209496756|gb|EDZ97053.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 580

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 66/115 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED  L  +   +L+    +  L+  +G+  ++LA Q +PD+I+ D+ +  + G
Sbjct: 1   MKKILIIEDERLVRENLVELLTFENFQVLEATDGLRGVKLAEQEQPDLILCDVMMPILDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             +  Q++++ +   IP I +TA A + +  +  + G + YI+KP S +  M +I
Sbjct: 61  YGVLAQLRQNPKTAIIPFIFMTALADRMNTRKAMELGADDYITKPCSAAELMRSI 115


>gi|160936076|ref|ZP_02083449.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440886|gb|EDP18610.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC
           BAA-613]
          Length = 219

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IV+D +    L    +  SGY     ++G EAL L      D+I++DI L  + G
Sbjct: 1   MIKVLIVDDEKPICDLIDLNLSASGYHCTSVQDGAEALRLIENQFFDLILLDIMLPGVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I   I+      +IPVI +TA     D  +  + G + Y+ KP  +   +  ++  + 
Sbjct: 61  YDIMSYIRPM----DIPVIFITARHEVKDRVKGLRLGADDYLVKPFDVVELVARVEAVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|167033014|ref|YP_001668245.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859502|gb|ABY97909.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 246

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L  + ++ +G       +G +       +  D+I++DI +    GL 
Sbjct: 6   HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + +  PV+ +TA   + D     + G + Y++KP S    +  I   +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123


>gi|22298114|ref|NP_681361.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294292|dbj|BAC08123.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 120

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 67/119 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED    M L    ++ SGY  +   +  EALE   Q+KPDV++ D+ +  +SG
Sbjct: 1   MTKVLVVEDIPSEMALISSFLQESGYAVITATDAKEALEKVAQYKPDVVVTDVVMPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ + +K++ E +++P++  T+   + D     K G +AY++KP S    +  +K  +
Sbjct: 61  FELCRSLKKNPETEKLPIVVCTSKNQELDRLWAMKQGADAYVTKPFSREDLVRALKSVV 119


>gi|148265171|ref|YP_001231877.1| response regulator receiver protein [Geobacter uraniireducens Rf4]
 gi|146398671|gb|ABQ27304.1| response regulator receiver protein [Geobacter uraniireducens Rf4]
          Length = 124

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 76/119 (63%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E  +KL   L+ + GY+     +G  ALE  + ++PD++I+DI L EI G E
Sbjct: 5   KILVVEDEESLLKLESILLTSKGYLVTGVMDGRAALEEIKTNRPDLVILDIMLPEIDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+IKE++E + IPV+ +TA     D ER R+ G +AYI+KP   +  ME I+  IG+
Sbjct: 65  VCKRIKENNETKSIPVVMLTAKKSNQDVERGRQVGADAYITKPFRSARVMEVIEGLIGK 123


>gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 226

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +   D +  +GY+  Q  +G E L +AR +  D+ I+D+ L   SGLE
Sbjct: 2   RLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGLPRFSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ D     +PV+ +TA     D     + G + Y+ KP  +   +  ++  +  A
Sbjct: 62  LIRALRADGRT--LPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRA 119


>gi|301308087|ref|ZP_07214041.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
 gi|300833557|gb|EFK64173.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
          Length = 1369

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++ VEDNE   +   +  +T  Y  +  +NG   LE A +  PDVI+ D+ +  ++G+
Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKAMEILPDVIVSDVMMPVMNGI 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + +K D     IPVI +TA A +  +      G + Y+ KP SL++    IK  +  
Sbjct: 1165 ECCEALKMDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLLKR 1224

Query: 123  A 123
            +
Sbjct: 1225 S 1225


>gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 222

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED +         +   GY      +G+E L  A +   D++I+DI L  ++G  
Sbjct: 2   RLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIMLPGMNGYR 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++      ++P++ +TA   + DE      G + Y++KP S  + +  +K  +  
Sbjct: 62  VCAALRA--AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118


>gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +      P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRAEGHG--FPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 227

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
 gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
          Length = 231

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED++    L +  +E +GY  +   +G   L L + H   ++I DI L ++ G
Sbjct: 1   MYSILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I++      IPV+ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELCKEIRK--ANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|254411375|ref|ZP_05025152.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181876|gb|EDX76863.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 779

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++++D   N+K   D ++ +GY     ++G++ L+L  Q  PD+II+D+ + E+ G E
Sbjct: 15  KILLIDDRVENLKPISDCLQNTGYEVRIAKSGIKGLKLLEQLTPDLIILDVIMPEMDGFE 74

Query: 64  ITKQIKEDSELQEIPVIAVTA---FAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K   + ++IPVI +TA    +    + +    G   YI+KPI +   +  IK ++
Sbjct: 75  TCRHLKTWEKTKDIPVIFMTAAMDTSNSEAKVKGLSLGAVDYITKPIQVDEVLARIKTHL 134


>gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 225

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +      P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRAEGHG--FPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT]
 gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT]
          Length = 234

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++++ED+     + +  +    Y    +  G E LE  ++   D+II+DI L EI 
Sbjct: 1   MNGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+    L  +P++ ++A   + D+ +  K G + YI+KP SL      ++  I
Sbjct: 61  GFTVCKNIR---LLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNI 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|90414906|ref|ZP_01222870.1| transcriptional regulatory protein CpxR [Photobacterium profundum
           3TCK]
 gi|90323962|gb|EAS40558.1| transcriptional regulatory protein CpxR [Photobacterium profundum
           3TCK]
          Length = 231

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+     L  D++E  G+  ++  NG+E L        D+I++D+ + +++G
Sbjct: 1   MAKILLVDDDVELTSLLTDILEMEGFDIVEANNGIEGLAKIDT-SIDLILLDVMMPKMNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++E       PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  TQMLRKLRESFAT---PVLMLTAKGEEIDRVLGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|332523095|ref|ZP_08399347.1| response regulator SaeR [Streptococcus porcinus str. Jelinkova 176]
 gi|332314359|gb|EGJ27344.1| response regulator SaeR [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D      + +  ++ +G++     +G +ALE  RQ++ D+II DI +  + 
Sbjct: 1   MTYKILLVDDEVSITDINKRYLQQAGHLVTVASDGSQALEKFRQNQYDLIISDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++    E    P + +TA   + D+      G + +ISKP S    +  +K  +
Sbjct: 61  GYDFIGEV--LLEKPNQPFLFITAKISEPDKIYSLSLGADDFISKPFSPRELVLRVKNIL 118

Query: 121 GE 122
             
Sbjct: 119 NR 120


>gi|329888730|ref|ZP_08267328.1| transcriptional regulatory protein chvI [Brevundimonas diminuta
           ATCC 11568]
 gi|328847286|gb|EGF96848.1| transcriptional regulatory protein chvI [Brevundimonas diminuta
           ATCC 11568]
          Length = 235

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + +V+D+E  +      +E+ G+      +G   LE      PD+ I+D+++  + G
Sbjct: 1   MANITLVDDDENIVASVSLALESHGHTVTAYHDGASGLEALETTPPDLAILDVKMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +++++      IPVI +T+   + DE      G + YI KP S  + +E +K  + 
Sbjct: 61  MEVLRRLRQ---TSSIPVIMLTSKDEEIDEILGFNLGADDYIHKPFSQRLLIERVKALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|294055133|ref|YP_003548791.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614466|gb|ADE54621.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 382

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 68/117 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+E+  KL R ++E SG+I  ++ +G  A++   +++PD+I++D+ +  I G  
Sbjct: 13  RILVVDDDEIIRKLLRRVLERSGFIVDESDSGEAAIQCIVENQPDLILLDVVMDGIDGFI 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++IK    ++ +P+I VT  +  G        G   YI+KPI+    +  I+ ++
Sbjct: 73  TCRKIKSMEGMESVPIIFVTGRSDTGSIVEGLDAGGSDYITKPINRHESLARIRNHL 129


>gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 227

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|149908621|ref|ZP_01897283.1| FOG: CheY-like receiver [Moritella sp. PE36]
 gi|149808455|gb|EDM68392.1| FOG: CheY-like receiver [Moritella sp. PE36]
          Length = 120

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 62/120 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++ V+D+    ++ +  ++ +GY      +G++ L  A+    D+II DI +  + G
Sbjct: 1   MKRILAVDDSVSIREMVQFTLKQAGYQVDSAVDGVDGLAKAKTGNFDLIISDINMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + ++++ +S  +  P++ +T  +    +   +  G   +I KP +    + T+KK + 
Sbjct: 61  ISLIRKLRSESAYKFTPILMLTTESGTDKKMAGKSAGATGWIVKPFNPEKLIATVKKVLR 120


>gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1236

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL++      D ++MDIQ+  + GL  
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTA 1173

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E      +P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1174 ARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWI 1229



 Score = 97.1 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  L+    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 968  RTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGGD 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  + + P +I +TA+A +  +  +      A + KP   S   + I
Sbjct: 1028 VISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084


>gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 914

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++ EDN +N +L   L+E  G+      +G +A+E   Q   DV++MD+Q+ E+ G +
Sbjct: 782 HVLVAEDNAVNQRLALRLLEKRGHRVKIVGDGAQAVEALAQDSFDVVLMDVQMPEMDGFQ 841

Query: 64  ITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            T  I+E      Q +P++A+TA AM+GD ER    G + YISKP+    F E ++
Sbjct: 842 ATAAIRERERGTGQHMPIVAMTAHAMRGDRERCLAAGMDDYISKPLRAEDFYEVVE 897



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59
           V+IV+DN  N ++  ++I   G   L   +G +AL   R          ++++D+ + ++
Sbjct: 640 VLIVDDNATNRRILDEMIRGWGMKPLAVESGPKALAALRNAAGIGRPLRLVLLDMMMPDM 699

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + K+I      +   VI +++        R    G  A++ KP+  S  +E I   
Sbjct: 700 DGFAVAKEIARGGGDERPAVIMLSSAQKDEMARRNWATGIAAFLLKPVRQSELLEAIFAV 759

Query: 120 I 120
           +
Sbjct: 760 L 760


>gi|254389912|ref|ZP_05005135.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443028|ref|ZP_08217762.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703622|gb|EDY49434.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 5   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 65  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118


>gi|3243089|gb|AAC23929.1| histidine kinase [Candida albicans]
          Length = 1081

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N KL   ++E  G+      NG+EA E  +++K DV++MD+Q+  + G E
Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934

Query: 64  ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M+T
Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994

Query: 116 IKKYI 120
           I K I
Sbjct: 995 INKCI 999



 Score = 33.6 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 15  MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74
           + + RD I   G I +  RN  +A  L    K D+I+       I  +EI K+++  SE+
Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813

Query: 75  QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + IP++ V     + +       G  +Y + P S++     I
Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855


>gi|78223511|ref|YP_385258.1| response regulator receiver protein [Geobacter metallireducens
           GS-15]
 gi|78194766|gb|ABB32533.1| response regulator receiver protein [Geobacter metallireducens
           GS-15]
          Length = 123

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 68/118 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IVED E  +KL   L+ + GY  +   +G+ ALE     +PD++I+DI L EI G 
Sbjct: 4   KKILIVEDEESLLKLESILLTSRGYEVVGATDGVAALEQVGLTRPDLVILDIMLPEIDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++IK++ E    PV+ +TA   + D  R    G  AY++KP   +  +E I+  +
Sbjct: 64  EVCRRIKQNPETAHTPVVMLTAKKSEQDCARGMAAGASAYVTKPFKSAKIIEIIQDLL 121


>gi|301059812|ref|ZP_07200706.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [delta proteobacterium NaphS2]
 gi|300446138|gb|EFK10009.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [delta proteobacterium NaphS2]
          Length = 246

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +  +  +   GY      +G  AL+   Q +PD+I++DI L EI GL +
Sbjct: 8   ILVVEDEAHLAEGLKLNLALKGYDVRIAMDGTSALQTWEQWRPDLIVLDIMLPEIDGLSV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ + E   IP++ ++A     D  +    G + Y++KP +L  F+  +K+ +  
Sbjct: 68  LRKIRLEDE--RIPILILSARGDPDDRVKGFTYGVDDYLAKPFNLDEFLLRVKRLLTR 123


>gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 227

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     +     ++  GYI  +  +G + LE A     D+II+D+ L  ++G+E
Sbjct: 5   KILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNENFDLIILDVMLPSLNGME 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + ++++++SE   +PVI +TA     D+      G + YI+KP ++   +  I+
Sbjct: 65  VLRRLRQNSE---VPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIR 115


>gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 229

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED      L R  +   G+      +G +A+  A +   DVI++D+ L  + G E
Sbjct: 2   RVLVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPVLDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        PV+ ++A     D  R    G + Y+ KP S       ++  I  
Sbjct: 62  VCRRLRAAERWA--PVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRR 118


>gi|218261992|ref|ZP_03476633.1| hypothetical protein PRABACTJOHN_02304 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223650|gb|EEC96300.1| hypothetical protein PRABACTJOHN_02304 [Parabacteroides johnsonii
           DSM 18315]
          Length = 372

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 64/114 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N+ L + +++  GY  L T +G +AL +A++  P++I++DI + E+ G E
Sbjct: 9   TVLVVDDVPTNVMLVQAILKKEGYTLLTTDSGAKALRIAQERHPNLILLDIMMPEMDGYE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + + +K + E   IPVI ++A +      +  + G   Y++KP      ++ + 
Sbjct: 69  VLQHLKSNPETNNIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122


>gi|197285448|ref|YP_002151320.1| DNA-binding transcriptional regulator BaeR [Proteus mirabilis
           HI4320]
 gi|227355932|ref|ZP_03840324.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194682935|emb|CAR43323.1| two-component system response regulator [Proteus mirabilis HI4320]
 gi|227163920|gb|EEI48822.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 235

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED     +L  D ++ S Y      +G E ++  +Q   D++++D+ L    G+ +
Sbjct: 10  ILIVEDEPKLAQLLIDYLQASDYQTQWLADGTEVIQHIKQSHYDLVLLDLMLPGKDGITL 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K++++     +IP+I VTA   + D     + G + YI KP S    +  +K  +  
Sbjct: 70  CKELRQ---FSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRR 124


>gi|166711394|ref|ZP_02242601.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188575701|ref|YP_001912630.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188520153|gb|ACD58098.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 229

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++VED+  +  +    +   G+      +G  A++L RQ  PD++++D+ L ++SG+
Sbjct: 4   KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   I+      + PVI VTA   + ++    + G + Y+ KP S    +  +   +  
Sbjct: 64  EVLSAIR---RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|117168636|gb|ABK32300.1| Jer7 [Sorangium cellulosum]
          Length = 1762

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60
            KKV++V+D+  N+     +++      +    G  A+E+ ++  PD+  ++MDI + E+ 
Sbjct: 1642 KKVLVVDDDVRNIFAMTTILDAQQMKTVYVETGRAAIEMLQR-TPDIEIVLMDIMMPEMD 1700

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G +  + I+   E   +P+IAVTA AMKGD E+  + G   YISKP+     +  ++ ++
Sbjct: 1701 GYDTIRAIRAKPEHHALPIIAVTAKAMKGDREKCFEAGANDYISKPVDPEHLLAMLRLWL 1760

Query: 121  GE 122
              
Sbjct: 1761 HR 1762



 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVE++        D+    G+ A+    G  AL + R+ + + I +DI L ++ G  +
Sbjct: 1375 VLIVENDASFAHFVMDVAHDHGFKAILAYRGGAALSIVRERRVNAITLDINLPDMDGWRV 1434

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKY 119
              ++K D   + IPV  +T      + ER  + G    + KP+ +     ET ++ 
Sbjct: 1435 LDRVKRDLATRHIPVQVIT---TDEERERALRMGATGVLCKPLKTRDALDETFRRL 1487



 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 37/79 (46%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + V++ E +E   +   +L+           +G EAL+       DV+I+ + L ++   
Sbjct: 1496 RTVVLAEPDEAERQELVELLGGDDVTIRSVASGEEALDALLTEGADVLILHLDLPDMRCF 1555

Query: 63   EITKQIKEDSELQEIPVIA 81
            ++  Q+ + S   E+PV+ 
Sbjct: 1556 DLIGQLAQGSGPTELPVLV 1574


>gi|117925955|ref|YP_866572.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117609711|gb|ABK45166.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 667

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++V+D+E N  L +  +    +      NG EAL L ++   D+I MDIQ+  + GL
Sbjct: 545 KRILLVDDSEDNRSLIQAYLRRYPHALTTAENGKEALTLVKEKHFDIIFMDIQMPVMDGL 604

Query: 63  EITKQIKEDSEL----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T+ I+         + +P+IA+TA  M  DE++    GC  +++KPI  +  ++ I  
Sbjct: 605 SATRAIRAWELTQQSNRNVPIIALTAHVMLEDEKKSIDAGCNFHLTKPIKKARLIDIIDN 664

Query: 119 Y 119
           +
Sbjct: 665 H 665


>gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 239

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E      +  +E   Y  +   +G +AL+   Q KP +I++D  L    G+ 
Sbjct: 7   KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEKPTLILLDWMLPVYDGMT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S   ++P+I +TA     D       G + Y++KP  +   +  I+  +  
Sbjct: 67  VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122


>gi|291287959|ref|YP_003504775.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885119|gb|ADD68819.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 233

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++MI++D+    ++    +    YI     N +EA+E     +P +II+D+ +  I+
Sbjct: 1   MKTRIMIIDDDSKLNRMLNKYLSQYAYIVDSYTNPLEAIEALENDEPSIIILDVMMPHIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E  K+I++   + ++P+I +TA     D     + G + Y+SKP      +  I   +
Sbjct: 61  GFETCKRIRK---ISDVPIIMLTARGDVSDRIAGLESGVDDYMSKPFEPRELVARISAIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|119898693|ref|YP_933906.1| putative sensor-regulator protein [Azoarcus sp. BH72]
 gi|119671106|emb|CAL95019.1| putative sensor-regulator protein [Azoarcus sp. BH72]
          Length = 1012

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 2/118 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN +N ++  + +  +G       +G E ++ A     D+I+MD+Q+  + GL
Sbjct: 672 ARVLLVEDNPINQQVATEFLRQAGLQVDLAGDGYEGVDRAVATAYDLILMDVQMPGMDGL 731

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I+        P++A+TA A+  D ER R  G   +++KPI  +    T+ ++I
Sbjct: 732 EATRRIRARD--SHTPIVAMTAHALDTDRERSRAAGMNGHLTKPIDPAELETTLVRWI 787



 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR---QHKPDVIIMDIQLQEI 59
           K +++V+DN     + R +IE   ++A    +G EA+   R   +    V++MD  +  +
Sbjct: 523 KPILVVDDNPTARAMLRTMIEHFHFVADTAASGEEAILKIREAGEQGYAVVLMDRDMPGL 582

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGD--EERIRKGGCEAYISKPISLSIFMETIK 117
            G+E  ++IK D  L   P I + A   K    +E     G +  ++KP+  S+   ++ 
Sbjct: 583 DGIEAARRIKLDLSLPTPPRILLMASYTKDHALQEAGHGAGLDGILTKPVGPSLLFNSLL 642

Query: 118 KYIGEA 123
           K +G A
Sbjct: 643 KVLGHA 648


>gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1627

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 67/118 (56%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VED   N  L   L+++ G+   +  NG EA+ +    KPD+I MDI++  ++G E
Sbjct: 1419 RILVVEDKFSNRLLLLKLLQSIGFDVKEAHNGQEAITIWSSWKPDLIFMDIRMPVMNGYE 1478

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             T+ IK   E  +  +IA+TA A + D + I   GC+ +I KP      +  I++++G
Sbjct: 1479 ATQYIKSTPEGNQTVIIALTASAFEEDRQMILSAGCDDFIRKPFQEEEILTVIRQHLG 1536


>gi|59713364|ref|YP_206139.1| transcriptional regulator SyrB [Vibrio fischeri ES114]
 gi|59481612|gb|AAW87251.1| probable transcriptional regulator SyrB [Vibrio fischeri ES114]
          Length = 221

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D+     L +++++  GY       G  ALE  + H  D++++D+ L ++ G
Sbjct: 1   MSRILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHSIDLVLLDVMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I +       P++ +TA   +       + G + +I+KP ++   +  I   + 
Sbjct: 61  YQVARRICQRFAT---PILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1236

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL++      D ++MDIQ+  + GL  
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTA 1173

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E      +P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1174 ARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWI 1229



 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  L+    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 968  RTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGGD 1027

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  + + P +I +TA+A +  +  +      A + KP   S   + I
Sbjct: 1028 VISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084


>gi|313204235|ref|YP_004042892.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
 gi|312443551|gb|ADQ79907.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
          Length = 229

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +ET GY+     +  EAL+       +++++D+ + E+SG +
Sbjct: 5   RILVVDDEEDLCEILQFNLETEGYLVDVAYSAEEALKK-DISIYNLLLLDVMMGEVSGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++E+ ++  IP+I +TA   + D       G + YISKP S+   +  +K  I  A
Sbjct: 64  MARILRENPKMANIPIIFLTAKDSETDRLTGFNIGADDYISKPFSIREVLARVKAVIRRA 123


>gi|299138655|ref|ZP_07031833.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599291|gb|EFI55451.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 251

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L    ++ +G       +G +       +  D+I++DI +    GL 
Sbjct: 11  HILVVDDDREIRELVSSYLKKNGLRVTIAADGRQMRSFLEANTVDLIVLDIMMPGHDGLV 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + + IPV+ +TA + + D     + G + Y++KP +    +  IK  +  
Sbjct: 71  LCRELRS-GKHKAIPVLLLTARSDEMDRIIGLEMGADDYLTKPFAARELLARIKAILRR 128


>gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 229

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           K+++V+D++   +L    I   GY  +   +G EAL   R +    ++I+DI +  ++G+
Sbjct: 2   KILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMNGI 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K++++DS+   IP+I ++A     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  EVIKEVRKDSQ---IPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118


>gi|226227265|ref|YP_002761371.1| two-component response regulator [Gemmatimonas aurantiaca T-27]
 gi|226090456|dbj|BAH38901.1| two-component response regulator [Gemmatimonas aurantiaca T-27]
          Length = 347

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N+++ R  ++   Y  L  R+G +ALELAR   PD+++MDI +  +SG +
Sbjct: 10  TLLLVDDESTNLQVLRHTLQDQ-YRLLFARDGHKALELARTDPPDLVLMDIMMPGLSGYD 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +K+D+  + IP+I VTA A   +E+     G   YISKP +  I    ++ ++
Sbjct: 69  VCRALKQDAFTEHIPIIFVTALADAANEQLGLDLGAVDYISKPFNPHIVKARVRTHL 125


>gi|126650201|ref|ZP_01722429.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905]
 gi|126592851|gb|EAZ86833.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905]
          Length = 1021

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 64/117 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D  +N+++   ++    Y  +   +G++AL   + H+ D++I D+ + ++SG E
Sbjct: 689 RILVVDDEPINLRVVETILANEQYDIVTVTSGLDALVSIQSHEWDLVISDVMMPKMSGYE 748

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + I++   + ++P++ +TA +   + E+    G   Y++KP+        +   I
Sbjct: 749 LVRLIRKQFSITDLPILLLTARSQPQNLEKGFLAGANDYVTKPVDALELRSRVAALI 805


>gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
 gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
          Length = 250

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 4   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 64  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|153005118|ref|YP_001379443.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028691|gb|ABS26459.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 509

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     ++  +++E   Y  +   +G  A++LAR+  PDV++MD+ +  + GL+
Sbjct: 195 RLLVVDDEADAREVLTEVLEPE-YEVMLAEDGEAAVDLAREEHPDVVLMDLFMPRLDGLQ 253

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             ++++ D+   +IPVI V+       + R    G   Y+ KP S       +++ + 
Sbjct: 254 ALERLRSDASTSDIPVIFVSGHGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLR 311


>gi|71279117|ref|YP_269981.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
 gi|71144857|gb|AAZ25330.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
          Length = 232

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED E    L  D +  +GY       G E +   +    D+I++D+ L    G
Sbjct: 1   MSHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L I ++I+E      I +I VTA   + D     + G + YI KP S    +  +K  + 
Sbjct: 61  LTICREIQE---FSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +  +  +E  GY+     NG EA+ L  +   D++++D+ +  I G E
Sbjct: 6   RILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIPGIDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K++K     +++ +I +TA     D+ +    G + Y++KP  +   +  I+  + +
Sbjct: 66  VCKRMKAQ---KDVAIIILTARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRK 121


>gi|297158051|gb|ADI07763.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 5   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 65  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118


>gi|260778745|ref|ZP_05887637.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604909|gb|EEX31204.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 749

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDN+ N  + R++ +  G       NG  A+E+  Q+  D+I MDI + E+ G+E 
Sbjct: 475 ILVAEDNKANQLVIREMFKRMGLSMDIAENGRRAIEMVEQYHYDLIFMDISMPEMDGMET 534

Query: 65  TKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+   D +  +IP+IA+TA ++ GD+E+    G   Y+SKPI LS  +E I  ++
Sbjct: 535 CRAIRSMTDEKTCQIPIIALTAHSLSGDKEQFLDAGMNDYLSKPIRLSQLIEKINLFL 592


>gi|3851457|gb|AAC72284.1| Nik1p [Candida albicans]
          Length = 1081

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N KL   ++E  G+      NG+EA E  +++K DV++MD+Q+  + G E
Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934

Query: 64  ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M+T
Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994

Query: 116 IKKYI 120
           I K I
Sbjct: 995 INKCI 999



 Score = 33.6 bits (77), Expect = 9.6,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 15  MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74
           + + RD I   G I +  RN  +A  L    K D+I+       I  +EI K+++  SE+
Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813

Query: 75  QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + IP++ V     + +       G  +Y + P S++     I
Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855


>gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I+ED     +  ++ +E   +      +G   LEL   +  D+ ++D  L ++SG+E
Sbjct: 2   RLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+++      +PVI +TA     D       G + Y+ KP +    +  I+  + +
Sbjct: 62  VCRQLRK--AGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQ 118


>gi|21241604|ref|NP_641186.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|84625209|ref|YP_452581.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|294626081|ref|ZP_06704689.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665691|ref|ZP_06730966.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325915004|ref|ZP_08177335.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325922400|ref|ZP_08184169.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|21106962|gb|AAM35722.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|84369149|dbj|BAE70307.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|292599617|gb|EFF43746.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604533|gb|EFF47909.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325538792|gb|EGD10457.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325547097|gb|EGD18182.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 248

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN    ++  + +E  G+     ++G++   LA ++  DV+++D+ L  + G+E+
Sbjct: 22  VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 82  CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 138


>gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 222

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++EDN    ++ +  +E SGY  L   +G+  L  AR++ PD++I+D+ L +  
Sbjct: 1   MEQRILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGLPDFD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI +++++      +P+I +TA      +  + + G + Y++KP      +  +K  +
Sbjct: 61  GAEIARRLRK---TSAVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM--DIQLQEISG 61
           K+++V+D+    +L    ++  GY  +   +G EA+     + PD+ +M  D+ +  ++G
Sbjct: 2   KILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTN-PDIALMVLDVMMPNMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K +++DS    IP++ ++A +   D+ +    G + Y++KP +    M  ++  + 
Sbjct: 61  LEVVKIVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|269962482|ref|ZP_06176831.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
 gi|269832778|gb|EEZ86888.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   GY   +  +G   L LA   + D++++D+ + +++G
Sbjct: 1   MANILLIDDDTELTSLLKEVLSFEGYEVSEANDGEAGL-LAINSEIDLVLLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E+ E    PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|322418618|ref|YP_004197841.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320125005|gb|ADW12565.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 338

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+++   +++   Y  L  ++G + + + +QH PD+I++DI +  + G E+
Sbjct: 26  VLIVDDTPANIEILYKILKDR-YDILFAKSGADGIRMVQQHMPDLILLDIMMPGMDGYEV 84

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +K D     IPV+ VTA     DE++  + G   Y++KPI   I +  ++ ++
Sbjct: 85  CSILKRDPVTARIPVVFVTAMGNDEDEKKGLELGAIDYLTKPIRPPIVLARVRNHL 140


>gi|288942102|ref|YP_003444342.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897474|gb|ADC63310.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 304

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGLE 63
           ++IV+D   N+++  D +++  Y      +G++ALE+A     PD+I++D+ + E+ G E
Sbjct: 13  ILIVDDLPANIRVLADTLKSD-YRVRVATSGLKALEVAAGDPPPDLILLDVMMPEMDGYE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K+D     IP+I VTA     +E R  + G   YI+KP  L I    ++ ++
Sbjct: 72  VCRRLKDDPRTSTIPIIFVTAKDEAEEEARGLELGAVDYITKPFHLPIVRARVRTHV 128


>gi|239997164|ref|ZP_04717688.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Alteromonas macleodii
           ATCC 27126]
          Length = 333

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D  +N+++ + L+  + Y  +  RNG EAL+L    +P++I++D+ +  ++G E
Sbjct: 10  TLLLVDDEPVNLRVLKQLL-ANDYQLIFARNGEEALKLTETRQPNLILLDVMMPGLTGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +Q+K+ ++ + IPVI VTA   + +E    + G   YI+KPIS +I    +K ++
Sbjct: 69  VCRQLKQQADTRHIPVIFVTALNDEHEETEGFEAGAVDYITKPISPAIVKARVKTHL 125


>gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K++IV+D++  ++L    ++  GY   +  NG EA+     + PD  ++I+DI + ++ G
Sbjct: 2   KILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTN-PDIGLMILDIMMPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + +++++DS+   IPV+ ++A     D+ +    G + Y++KP +    M  +K  + 
Sbjct: 61  LAVVREVRKDSQ---IPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
 gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
          Length = 234

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KV++V+D    ++L    ++  G+      +G++ALE+A + KPD  I+D+ +  + G
Sbjct: 5   STKVLVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAPEFKPDAFILDVMMPGMDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+  +++      E PV+ +TA             G + Y++KP SL   +  ++  + 
Sbjct: 65  FELLPKLRALGF--EGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILR 122

Query: 122 E 122
            
Sbjct: 123 R 123


>gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 239

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE 58
           M  K+V+IVED+     L R  +   GY      +G   L L  Q  P D +++D+ L  
Sbjct: 1   MSTKRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GL++ ++ +  +    +P+I ++A   +       + G + Y++KP S+   +  ++ 
Sbjct: 61  VDGLQVCQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRA 118

Query: 119 YIGEA 123
            +  A
Sbjct: 119 LLRRA 123


>gi|91774039|ref|YP_566731.1| response regulator receiver protein [Methanococcoides burtonii DSM
           6242]
 gi|91713054|gb|ABE52981.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
          Length = 123

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/119 (40%), Positives = 80/119 (67%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VEDN +NM+L  +L+E+ GY   Q  +G  AL+  ++ K D+I++D+QL  + G
Sbjct: 1   MAQILVVEDNPMNMELTVNLLESWGYEVGQAEDGPIALDKVKEAKYDLILLDMQLPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+   +KEDSE   IPV+A+TA +M GD+++    GC  YISKPI +  F + I +++
Sbjct: 61  LEVLSHLKEDSETAGIPVVALTAHSMAGDQDKFLDAGCTGYISKPIDIHEFKKRIVEFL 119


>gi|312211920|emb|CBX92004.1| hypothetical protein [Leptosphaeria maculans]
          Length = 934

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 69/127 (54%), Gaps = 9/127 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH----KPDVIIMDIQLQEI 59
            +++VEDN +N K+    ++  GYI     +G +AL+          P  ++MD  +  +
Sbjct: 801 HILLVEDNPINRKVISLALQKLGYIVTAVCDGQQALDYLCTSSPHPPPHALLMDCMMPNV 860

Query: 60  SGLEITKQIKEDSEL-----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            G + T++I+ D  L     + +P+IA+TA A+KGD E+  + G + +++KP +      
Sbjct: 861 DGYQATRRIRTDETLFSESVRRLPIIALTASAIKGDREKCFEAGFDDFLTKPAARDDLKR 920

Query: 115 TIKKYIG 121
           T+ +++G
Sbjct: 921 TLLRWLG 927


>gi|308069099|ref|YP_003870704.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858378|gb|ADM70166.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 233

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++IVED+     L +  +E  GY  +   N  + L + ++ KPD++++D+ L    G
Sbjct: 1   MQKILIVEDDPQISSLLQSYLEKYGYQGINVSNFDQVLAIFQEVKPDLVLLDVNLPRFDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               +QI+  S     P++ V+A   K D+    + G + YI+KP    + +  ++  + 
Sbjct: 61  FYWCRQIRTQS---TCPILFVSARDDKMDQVIALQNGADDYITKPFYPEVLLAKVESNLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED      +    +    Y      NG +AL+       D+I++DI +  I+
Sbjct: 1   MLMRVLIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103]
 gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +L  D ++ S Y      +G E L+   Q  PD+I++D+ L    GL +
Sbjct: 10  ILVVEDEPKLAQLMIDYLQASNYRTHHLAHGNEVLDYVNQTPPDLILLDLMLPGKDGLTL 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ DSEL   P+I VTA   + D     + G + Y+ KP S    +  +K  +  
Sbjct: 70  CREIRRDSEL---PIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRR 124


>gi|262273414|ref|ZP_06051228.1| signal transduction response regulator [Grimontia hollisae CIP
           101886]
 gi|262222392|gb|EEY73703.1| signal transduction response regulator [Grimontia hollisae CIP
           101886]
          Length = 318

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D   N+ + R +++   Y  +  ++G  A+ELA Q +PD+I++DI +  ++G E+ 
Sbjct: 2   LVVDDEPSNLHVMRTILQEH-YTLIFAKSGERAIELAIQQRPDLILLDIMMPGMNGYEVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +K +  +  IPVI V+A      E    K G   ++ KP+S  +    +   +GEA
Sbjct: 61  RALKHEDSVSHIPVIIVSALDEYQSEVEGLKSGAADFLIKPVSPDLVKSRVANLLGEA 118


>gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
 gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K++ VED+   +   +  +E+SGY     R   EAL L R +  D++++D+ L + +G
Sbjct: 1   MQKILYVEDDLSLIDGLQYTLESSGYAVDNARTVKEALSLFRSNHYDLLLLDVTLPDGTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+++  S    IP+I +TA   +    +    G + YI+KP  L+  +  IK  + 
Sbjct: 61  FDVCKEVRSSS---TIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 241

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+IVED+    +L R  ++  GY      +G   L    +   D +++D+ L  + GL
Sbjct: 5   KRVLIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSWDALVLDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  ++  +  
Sbjct: 65  EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRR 122


>gi|5759261|gb|AAD51056.1|AF175293_1 response regulator [Enterococcus faecium]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++  GY   +  NG +AL+     + D+ I+DI L ++ 
Sbjct: 1   MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E       PVI +TA    GD+        + YI+KP +    +  +K  +
Sbjct: 61  GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLELVARVKAQL 116

Query: 121 GE 122
            +
Sbjct: 117 RQ 118


>gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea sp.
            MED297]
 gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea sp.
            MED297]
          Length = 1090

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
            KV++V+D+  N      ++   G+      NG  AL+   +     +I+MDI +  + G 
Sbjct: 965  KVLVVDDDLRNTYTLSKILSNEGFRVSIADNGQLALDKLSKDSNIALILMDIMMPVMDGY 1024

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E   +I+     + +P+IA+TA AM  D ++    G + Y+ KP+ L   +  ++ +I
Sbjct: 1025 ETIARIRAQHS-ETLPIIALTAKAMPEDRQKCLSAGADDYLPKPVDLEQLLVKVRGWI 1081



 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +I+ED+              G  AL T  G++AL    +  P  +I+D+ L +I G EI 
Sbjct: 806 LIIEDDPSFAAYLEKAARKQGMSALVTGYGLQALSYCLRKPPGAVILDLGLPDIDGCEIL 865

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           + ++     + IPV  ++A        R  + G E Y++KPI+L   
Sbjct: 866 QVLQNLQHHRNIPVHVISALDDPA---RAMQLGAEEYLAKPINLEQL 909


>gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 247

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++I+ED E    +    +   GY   +   G E +++      D+II+D+ L  IS
Sbjct: 13  MKENILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIENSNIDLIILDLMLPGIS 72

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I   +   +IP+I +TA     D+    + G + YI+KP  +   +  IK  +
Sbjct: 73  GYDVCREI---NPNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVCL 129

Query: 121 GE 122
             
Sbjct: 130 RR 131


>gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407]
 gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407]
 gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC
           H10407]
          Length = 240

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     L R  ++  GY  +   +G ++L L  +   D +++D+ L  + GL
Sbjct: 5   KKILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLMLPNVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++I++ +    +PVI ++A   +       + G + Y+ KP S+   +  +K     
Sbjct: 65  EICRRIRQMAGY--LPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRR 122


>gi|295687624|ref|YP_003591317.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295429527|gb|ADG08699.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + +++D+E  +      ++  G+      +G+  LE    + PD++I+D+++  + G
Sbjct: 1   MATITLIDDDENIVASIAMTLQAHGHTVNHFHDGVSGLEGVEANPPDLVILDVKMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +++++ SE   IPVI +T+   + DE      G + Y+ KP S  + +E +K  + 
Sbjct: 61  MEVLRRLRQHSE---IPVIMLTSKDEEIDEVLGFNLGADDYMHKPFSQRLLVERVKAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|260220090|emb|CBA27281.1| hypothetical protein Csp_A01490 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 305

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 64/117 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV+IV+D++  +    ++++ +GY      N  EA +   + KP +I+MD+ +   +G 
Sbjct: 59  QKVLIVDDSKTELLYLTEILQKNGYTVRAAENADEAFKRLAEEKPQLILMDVVMPGQNGF 118

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           ++T+ I    E  +IP+I  T+ +++ D     + G + YI+KP+  S  +  IK  
Sbjct: 119 QLTRAINRTPEYADIPIIMCTSKSLETDRVWGMRQGAKDYITKPVDASELLAKIKAL 175


>gi|170761007|ref|YP_001787015.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407996|gb|ACA56407.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D +   +     ++  G    + ++G++AL L   H   +IIMDI + ++ G++
Sbjct: 5   KVLIVDDEDEIREAVEIYLKNEGIAVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T +I+E+   + IP+I ++A +   D+      G + Y++KP ++   +  +K  +  
Sbjct: 65  ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|160943810|ref|ZP_02091041.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444984|gb|EDP21987.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
          Length = 648

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 73/123 (59%), Gaps = 5/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59
           K +++VEDN LN ++  ++++ +G++     +G+EA+E   Q    + D+I+MDIQ+  +
Sbjct: 525 KHLLLVEDNALNREIAIEILKEAGFLVDTAGDGVEAVEKMEQSVPGQYDLILMDIQMPRM 584

Query: 60  SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G E T++I+   D     IP+ A+TA A + D++     G   +I+KP+ +   ++ ++
Sbjct: 585 DGYEATRRIRALPDPRKAGIPIFAMTANAFEEDKQNALNAGMNGHIAKPLDIPHLLKVLE 644

Query: 118 KYI 120
           + +
Sbjct: 645 EAL 647



 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58
           + ++ +D+         ++   G     T +G EA+      + +     V I+D  + +
Sbjct: 386 RALVADDDTNTCLSVSTMLSKIGMRPEWTISGKEAVIRTKYAVEQGDAFSVYIIDWLIPD 445

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+EI +QI++       P+I +TA+     EE  R  G  A+  KP+ LS      +K
Sbjct: 446 MNGIEIVRQIRK-VIGDSCPIIILTAYDWADIEEEARAAGVTAFCEKPLFLSEL----RK 500

Query: 119 YIGE 122
            + E
Sbjct: 501 VLAE 504


>gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
 gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
          Length = 241

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQLQEI 59
           ++++VED++   +   + + + G+      +G  ALE  +        D++++D+ L  +
Sbjct: 13  RLLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPGV 72

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGL++ + ++        P+I V+A   + D     + G + Y+ KP  +   +   +  
Sbjct: 73  SGLDVCRYMRRRGF--STPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRAL 130

Query: 120 IGEA 123
           +  +
Sbjct: 131 LRRS 134


>gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D+     + +  +   GY      NG +AL LA  + PD+II+DI L  I 
Sbjct: 1   MRARILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALALA-ANNPDLIILDIMLPGID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           GL + +QI+ +S   +IP++ +TA     D       G + Y+ KP +L  
Sbjct: 60  GLAVCRQIRSNS---DIPILMLTARDDTADRVLGLDTGADDYLVKPFALEE 107


>gi|87119492|ref|ZP_01075389.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Marinomonas sp.
           MED121]
 gi|86164968|gb|EAQ66236.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Marinomonas sp.
           MED121]
          Length = 560

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  K++IV+D E N    +  ++  GY    +  NG  ALE+  + + D+I++D+ +  +
Sbjct: 1   MSVKILIVDDYEDNRYTLKRRLKRDGYKECDEAENGQIALEMMSKKQYDLILLDLMMPIM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ + +K   E + +PVI ++A        +    G E Y+ KP +  I    +K  
Sbjct: 61  DGFEVLEHMKLKDEFRHLPVIMISAADDLEKIAQGIALGAEDYLPKPFNPIILKARVKSA 120

Query: 120 I 120
           +
Sbjct: 121 L 121


>gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606]
          Length = 319

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IPVI +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|189465197|ref|ZP_03013982.1| hypothetical protein BACINT_01542 [Bacteroides intestinalis DSM
            17393]
 gi|189437471|gb|EDV06456.1| hypothetical protein BACINT_01542 [Bacteroides intestinalis DSM
            17393]
          Length = 1357

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++DN+  + + +D++    Y  L   NG E L + +Q  PD+II DI + +I G+ 
Sbjct: 1100 TILMIDDNKELLWMLKDILSDE-YSVLTAENGEEGLTILKQKTPDLIITDIMMPKIDGIT 1158

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + KQ+K +     IP++ ++A     ++    + G +AYI KP +       IK+ +
Sbjct: 1159 LIKQLKSNKHTMHIPLVILSAKNTTDEKIEGIESGADAYIPKPFNTQYLKSIIKQLL 1215


>gi|189466658|ref|ZP_03015443.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM
            17393]
 gi|189434922|gb|EDV03907.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM
            17393]
          Length = 1369

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VED++         +E   Y  ++  NG++  + A Q  PD+++ DI + + +GLE+
Sbjct: 1116 VLLVEDDKDVRDYLHKSLEND-YEIIEAANGIKGYDKAVQFFPDLVLSDIMMPKRNGLEL 1174

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               IK D  +  IPVI +TA +M        + G + Y+ KP S+ +    I+  +
Sbjct: 1175 CSMIKNDIRIGHIPVILMTARSMVMHIREGFEAGADDYVIKPFSMDVLRIRIQSLL 1230


>gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|53712868|ref|YP_098860.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681087|ref|YP_211231.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|253563148|ref|ZP_04840605.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265762967|ref|ZP_06091535.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52215733|dbj|BAD48326.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60492521|emb|CAH07292.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|251946924|gb|EES87206.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263255575|gb|EEZ26921.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|301162575|emb|CBW22122.1| putative two-component response regulator [Bacteroides fragilis
           638R]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++       ++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-NISSYHLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  ++P+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622]
 gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus]
 gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +    L    +  +G+       G   L  AR H PD++++D+ L +++G
Sbjct: 1   MSRILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHPPDLVLLDLMLPDVAG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +K D+EL++  VI V+A   + D  +  + G + Y+ KP S+   +  +K  + 
Sbjct: 61  SEVLRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|124265328|ref|YP_001019332.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258103|gb|ABM93097.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 251

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQ 57
           + +  ++IVED           + T G+  L    G  AL+    +   P ++I+D+ L 
Sbjct: 1   MARAQILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           +++G E+ K+I+E     ++PV+ +TA + + D     + G + Y++KP S    +  ++
Sbjct: 61  DLNGFELFKRIRE--RAADLPVVFLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVR 118

Query: 118 KYIGE 122
             +  
Sbjct: 119 TVLRR 123


>gi|326410769|gb|ADZ67833.1| Response regulator receiver [Brucella melitensis M28]
 gi|326554061|gb|ADZ88700.1| Response regulator receiver [Brucella melitensis M5-90]
          Length = 118

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 89/118 (75%), Positives = 107/118 (90%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           MIVEDNELNMKLFRDLIE SGY  ++TR+G+EAL+LAR+H PD+I+MDIQL E+SGLE+T
Sbjct: 1   MIVEDNELNMKLFRDLIEASGYETIRTRSGLEALDLAREHHPDLILMDIQLPEVSGLEVT 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           K +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+  F+ETIK Y+G+A
Sbjct: 61  KWLKDDEELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYLGDA 118


>gi|302669419|ref|YP_003829379.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393892|gb|ADL32797.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I +D    +     +++ S Y      NG +AL+ A     D II+DI +  + G E
Sbjct: 6   KLLIADDETELVNALVAILKHSNYTVDAVYNGTDALDYALAGDYDGIILDIMMPGMDGTE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+I+E       PV+ +TA     D  R    G + Y+ KP  +   +  ++  +  
Sbjct: 66  VLKKIREKGL--STPVLFLTAKTEVDDRIRGLDLGADDYLPKPFDMGELLARVRAMLRR 122


>gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126]
          Length = 240

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     ++P+I +TA   + D     + G + Y+ KP +    +   K  +  
Sbjct: 67  ICRRLRQQEN--DMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123


>gi|237725959|ref|ZP_04556440.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435767|gb|EEO45844.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1448

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++I+EDNE        ++    Y+ L+  NG + LE+  +  PD++I DI + E+ G+E
Sbjct: 1182 RILIIEDNEELRHFICGVLARE-YVVLEAGNGCQGLEMTLRELPDIVISDIMMPEMDGIE 1240

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              K++K ++++  IP+I ++A +   D+ +  + G + YI+KP S +     +   +
Sbjct: 1241 YLKRVKGNNDICHIPIILLSAKSSLNDQIQGLEYGADEYITKPFSSAYLKARVDSLL 1297


>gi|160932717|ref|ZP_02080106.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753]
 gi|156867791|gb|EDO61163.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753]
          Length = 219

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED++   KL    +  SGY ++   +G EA+ + R  + D+I++DI L  + G
Sbjct: 1   MPKILIVEDDQTISKLIAASLSISGYESVPCFDGNEAVHMVRNEEFDLILLDIMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+E       PVI +TA     D  +  K G E YI KP      +  I+  + 
Sbjct: 61  FQVMEKIRETG----TPVIFLTAMGDVSDRVKGLKSGAEDYIVKPFEPLELLARIEIVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R]
 gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED E        L+   G+  +   +G  AL    +++ D++++D+ L  +SG
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+++    +  +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKELRS---VSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|120610912|ref|YP_970590.1| response regulator receiver protein [Acidovorax citrulli AAC00-1]
 gi|120589376|gb|ABM32816.1| response regulator receiver protein [Acidovorax citrulli AAC00-1]
          Length = 140

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-IS 60
           +K V+IV+D+    +L R  +E  G    +  +G  AL +AR  +PD++++D+ +   + 
Sbjct: 13  MKTVLIVDDHAEIRRLLRMTLEDQGVALHEAASGEAALAMARAQRPDLVLLDLMMPGSLD 72

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G+E+ ++I+ D +L    VI ++A     D     + G   +ISKP S +   ET+++ 
Sbjct: 73  GMEVCRRIRNDPDLSHTRVIILSARDGLQDRAAGMQAGASGFISKPFSPAYLAETVRRL 131


>gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 223

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +      +  +E   Y      +G E L+ A+  +  + I+D+ + +  GL 
Sbjct: 2   KILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMVPKKDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E     ++PV+ +TA     D     + G + Y++KP + +  +  ++  +  +
Sbjct: 62  VIRELRE--GGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRRS 119


>gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             + ++V+D    +++    ++  G+      +G  AL+LAR+  PDVI++D+ L  + G
Sbjct: 11  SPRALVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTDPDVIVLDVGLPGMDG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + ++      +  V+ +TA A + D       G + YI+KP S    M  ++  + 
Sbjct: 71  IEVCRTLR---TFTDAYVVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLR 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|291516107|emb|CBK65317.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 1357

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             VM+V+D+   +     ++  + Y  + T +G +AL L R + PD+++ DI + +I G+E
Sbjct: 1104 TVMVVDDDSNILDFLVKVL-GNDYFVISTDSGSQALNLLRNNDPDLVVSDIMMADIDGIE 1162

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + ++IK D     IPVI +TA      +    + G +AYI KP S       I   + 
Sbjct: 1163 LCRRIKNDISTSHIPVILLTARTGISSKIEGFECGADAYIEKPFSPDQLKAQIFSLLR 1220


>gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3]
 gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 241

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQVGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|160938781|ref|ZP_02086133.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438480|gb|EDP16239.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
           BAA-613]
          Length = 224

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ ED++   +L   +++  GY  +   +G+EAL+L   H  D++I+DI +  + G E 
Sbjct: 4   ILVAEDDKNTRRLMEAVLKEHGYHPILACDGLEALKLLDTHHVDLVILDIMMPGMDGYEF 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           T+Q++       +P++ VTA  +  D+ +    G + Y++KP+     +  I+  +  A
Sbjct: 64  TRQLRATDYT--LPILMVTAKQLPEDKRKGFIVGTDDYMTKPVDEEEMILRIRALLRRA 120


>gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+++VED +   ++    ++  GY       G++ L+   +   D++++D+ L E+
Sbjct: 1   MNKGKILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVMLPEL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGLE+ +++++ +     P++ +TA     D+      G   YI+KP  +   +  I+  
Sbjct: 61  SGLEVLRRVRKTNTA--TPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQ 118

Query: 120 IG 121
           + 
Sbjct: 119 LR 120


>gi|71905649|ref|YP_283236.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Dechloromonas aromatica RCB]
 gi|71845270|gb|AAZ44766.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Dechloromonas aromatica RCB]
          Length = 379

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLE 63
           +++V+D+  N+ L  +++    Y      +G +AL++      PD+I++DI +  +SGLE
Sbjct: 10  ILVVDDSPENIDLLSEVLRDE-YRIRVATSGEKALKIVYSDEPPDLILLDIMMPGLSGLE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           I +++K + + + IPVI VTA +   DE+R  + G   YI+KPIS  I    ++ ++
Sbjct: 69  ICRRLKANPDRRRIPVIFVTAMSSMDDEKRGLETGAVDYITKPISPPIVKARVRTHL 125


>gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104]
 gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium 104]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++++D    ++  R  +   GY  +    G  AL  A +HKPDV+I+D+ L +ISG
Sbjct: 1   MTRVLVIDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAEHKPDVVILDLGLPDISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++   ++        PVI ++A     D+      G + Y++KP  +  F+  ++  + 
Sbjct: 61  IDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|120600124|ref|YP_964698.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291948|ref|YP_001182372.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560217|gb|ABM26144.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563638|gb|ABP74573.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319425239|gb|ADV53313.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED+    +   D +   GY       G  ALE+     PD++++D+ +   +G 
Sbjct: 5   KHILVVEDDTSLAEWISDYLLDHGYEVTVASQGDFALEMIADETPDLVLLDVMMPVKNGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+ +        P++ +TA    GDE R    G + Y++KPI   + +  IK  +  
Sbjct: 65  DVCKEARAFYAG---PILFMTACVEDGDEIRGLDAGADDYLTKPIRPQVLLARIKALLRR 121


>gi|329120744|ref|ZP_08249406.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460541|gb|EGF06877.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+ +  +L  + +   G       +G   +      + DV+++D  + +++G
Sbjct: 1   MSRVLLVDDDAVLTELLTEYLTAEGLEVRSVPDGEAGVHEILSGQYDVVVLDSMMPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ K ++  S    IP+I +TA     D     + G + Y+ KP +    +  I   + 
Sbjct: 61  LDVLKTVRTQS---SIPIIMLTAKGDDIDRIIGLEMGADDYVPKPSTPRELLARINAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1273

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 77/125 (61%), Gaps = 8/125 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDNE+N  + +++IE +G+      NG EA++L ++ K D+++MD Q+    G  
Sbjct: 1003 RILVTEDNEINQIVTQEIIERAGFQCRLANNGQEAIDLLKKRKFDLVLMDCQMPVKDGFT 1062

Query: 64   ITKQIKE--------DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
             T +I++            Q +P++A+TA A+KGD+ER  K G +AY++KPI   + + T
Sbjct: 1063 ATAEIRQIQPKGELNKDLPQHLPIVALTANAVKGDQERCLKAGMDAYVAKPIDPQLLIST 1122

Query: 116  IKKYI 120
            I+K +
Sbjct: 1123 IRKLL 1127



 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
           +++ V+D E N  + +  I T G   +   +  EAL+  +     +   ++ I D  + E
Sbjct: 854 RILAVDDVETNRVILQTQIATWGAEVVTVSSANEALQELQTAAREERPFEICITDYNMPE 913

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GL++++ +  D +L++   + +T+        ++ + G  A   KPI  S     +  
Sbjct: 914 MDGLQLSRSVSNDPDLKDTRFLLLTSSDGIE-RRQLEENGIHACSCKPIRPSRLFNELLA 972

Query: 119 YI 120
            +
Sbjct: 973 LL 974


>gi|271961978|ref|YP_003336174.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
 gi|270505153|gb|ACZ83431.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
          Length = 1392

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
             K++IV+D+  N+     ++E  G   +   NG E +E   R     +++MDI + E+ G
Sbjct: 1261 AKILIVDDDIRNVFALTSVLERYGSTVVYAENGREGIEQLERNEDVALVLMDIMMPEMDG 1320

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I+   +  ++P+IA+TA  M+GD E+    G   Y+ KP+ +   +E ++ ++ 
Sbjct: 1321 WATTSAIRRMPQFADLPIIALTAKVMQGDREKSIASGASDYVPKPVDVDRLLERLRGWLT 1380

Query: 122  E 122
             
Sbjct: 1381 R 1381


>gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
 gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|91785401|ref|YP_560607.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689355|gb|ABE32555.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 245

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+ +  +L    ++  G+     ++GM      +  +P +I++DI + E+ 
Sbjct: 1   MNPSILVVDDDPVVRELVSGYLQGRGFKVDTLQDGMALQRQLQHERPALIVLDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++      +IPVI +TA A   D     + G + Y+ KP   S  +  I+  +
Sbjct: 61  GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D++    L RD +E   +  L   N  EA E  +Q   D +I+DI +   +G 
Sbjct: 4   KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+  S   ++P++ ++A +   D+ R    G + YI K  S    +  +K  +  
Sbjct: 64  AFCRRIRAKS---DVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yclJ
 gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis]
 gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN     +        G+ A    +G+E  +   +   D+II+DI L  + G+ 
Sbjct: 2   KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+E      +P+I +TA   + D+    + G + Y++KP S    +  IK  I  
Sbjct: 62  ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117


>gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 254

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++VED+     +    +  +G+  +   +G+ AL+  R+ +PDV+I+D+ L  +SGL
Sbjct: 23  ATVLVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAWRERRPDVVILDVMLPLMSGL 82

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++ + + +     VI ++A   + D     + G + Y+ KP S    +  ++  +  
Sbjct: 83  EVLRRRRAEDDHAA--VIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLRR 140

Query: 123 A 123
           A
Sbjct: 141 A 141


>gi|327405174|ref|YP_004346012.1| Crp/Fnr family transcriptional regulator [Fluviicola taffensis DSM
           16823]
 gi|327320682|gb|AEA45174.1| transcriptional regulator, Crp/Fnr family [Fluviicola taffensis DSM
           16823]
          Length = 352

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++EDN    +   +++E + Y  +   NG E + LA +  PD+II DI +  + G
Sbjct: 1   MKKILLIEDNIDIRENTAEILELAQYEVITAENGKEGVRLAIKETPDLIICDIMMPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +   + ++ E   IP I +TA A + D  +    G + Y++KP      M  I+  + 
Sbjct: 61  HGVLHLLSKNEETAGIPFIFLTAKAERSDVRKGMAMGADDYLTKPFDDQELMNAIETRLN 120

Query: 122 E 122
           +
Sbjct: 121 K 121


>gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1]
 gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1]
          Length = 319

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IPVI +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 233

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+I++D+   +++ +  +E   +  + T++G+ AL L + ++ D+I++D+ L +I+
Sbjct: 1   MQYKVLIIDDDYEILEILKLFLEIENFDVVTTQSGLNALNLIKNNQYDLILLDLGLPDIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I K+I+E SE    P+I +TA     ++    + GC+ YI KP      +  IK  +
Sbjct: 61  GEHICKKIREMSET---PIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAIL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|283850562|ref|ZP_06367850.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574133|gb|EFC22105.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV++V+D+  N+     ++   G   L+  +G +ALE+ R     D ++MDI +  + G
Sbjct: 1110 KKVLVVDDDMRNLFALSKVLTEKGLRVLKADDGAKALEILRAEPDVDAVLMDIMMPGLDG 1169

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+E+S    +P+IA+TA AMK D  +    G   Y++KP+ +   +  ++ ++
Sbjct: 1170 YEAMRRIREESRFAGLPLIALTAKAMKEDRGKCLAAGANDYLAKPVDVDKLLSMLRVWL 1228



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 51/108 (47%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED+     + RDL    G+ A+    G E L LA +  P  +I+D++L  ISG  +
Sbjct: 841 ILIIEDDPDFAAILRDLSRGKGFRAVAAATGEEGLSLAERLCPLGVILDLRLPGISGWTV 900

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
              +K +   + IPV  V+      D    +  G   +++KP+     
Sbjct: 901 LGALKRNHATRHIPVHVVSVHDAPRDAVNSQIMGAVGFLNKPVDGEEL 948



 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 49/100 (49%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED+    +  R L+        +  +G +ALE       D +I+DI L ++ G E+ 
Sbjct: 967  LLVEDDPDLRRGIRRLVADLDVNVTEAGSGAKALEALAGRSFDCMILDIGLSDMCGFELL 1026

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            +++++D E+   PVI  T   +  +EE       ++ I K
Sbjct: 1027 QRLEKDREVPVPPVIVYTGRDLTREEEMELYRHADSIIIK 1066


>gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 210

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 59/118 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++++D+   + L RD +   GY  L   NG  AL +  Q  PD+II D+ + E+ G 
Sbjct: 5   KRLLLIDDDPNLILLVRDYLGFRGYDVLTAENGQRALGILEQDIPDMIICDVMMPEMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +Q++++     +PV+ ++A     D  +    G + Y+ KP      +  ++  +
Sbjct: 65  TFVEQVRQNERTSWVPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 122


>gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
 gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
          Length = 228

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   G+   +  +G   L        D+I++D+ + +++G
Sbjct: 1   MAHILLIDDDTELTNLLKEVLSYEGFDVSEANDGQSGLAALNDE-IDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E+      PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKRLRENW---TTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
            2366]
          Length = 1196

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K V+I +D+  N+      +E      L   +G EAL+  + +   D+++MD+ + E+ G
Sbjct: 1074 KTVLIADDDVRNIFSLTKALEQHKMKVLAATDGKEALQTLKDNPLVDIVLMDMMMPEMDG 1133

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E TK+I++ +  +++PV+AVTA AM GD E+    G   YISKP+ +   +  ++ ++
Sbjct: 1134 YETTKEIRKIAAYKQLPVLAVTAKAMMGDREKCIAAGASDYISKPVDIDQLISLLRVWL 1192



 Score = 88.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED+    K          Y  +    G   +ELA  ++P  I++DIQL    G ++
Sbjct: 806 ILIIEDDTNFAKTLLRFTRKRNYKGIVAVRGDAGIELANHYRPLAILLDIQLPVKDGWQV 865

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K +   + IPV  +++      ++     G   +I+KP++L    +  +K 
Sbjct: 866 MEELKSNPLTRPIPVHIMSSL---EVKKESLLKGAVDFINKPVALEQMQQIFQKL 917



 Score = 68.6 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 47/103 (45%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KKV+IVE+N+ + +     +           N  +++    + + D +I+D+ + + S  
Sbjct: 926  KKVLIVEENKQHAEALSYFLSNYNIQTEVADNVTQSIGALNKQEVDCVILDMGIPDKSAY 985

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            E    IK+   L+ +P+I  T   +   EE   K   ++ + K
Sbjct: 986  ETLDTIKKSKGLENLPIIIFTGKNLSKGEESRIKQYADSIVVK 1028


>gi|253688514|ref|YP_003017704.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755092|gb|ACT13168.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+EDN   +    +  E  GY+    R+G   L +A Q+  D I++D+ L  + G
Sbjct: 1   MTRLLIIEDNPELVANLYEFFEPLGYVLDDARDGATGLRMATQNDYDAILLDLMLPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + ++++++ +   +PV+ +TA     D  +    G + Y+ KP SL      IK  + 
Sbjct: 61  MTLCRKLRQEFQNP-VPVLMLTARDPIDDRVQGLALGADDYLVKPFSLKELDARIKALVR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 255

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G       +G  A+  AR  +PDV+++DI L ++ GL 
Sbjct: 28  RVLVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIMLPDMDGLA 87

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  Q++   E+ ++PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 88  VLGQLRR--EIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRS 145


>gi|172039201|ref|YP_001805702.1| putative two-component response regulator [Cyanothece sp. ATCC
           51142]
 gi|171700655|gb|ACB53636.1| putative two-component response regulator [Cyanothece sp. ATCC
           51142]
          Length = 608

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   ++   GY   +   G  AL++ +   PD+I++DI + ++SG E+
Sbjct: 26  ILIVDDTIENLRVLSSILIEQGYSVRKATGGKMALKVVKTLPPDLIMLDIMMGDMSGYEV 85

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++KE+ +  +IPVI ++A     D+ +  + G   YISKP  +   +  +K  +
Sbjct: 86  CQKLKENPDTADIPVIFLSALDDVFDKVKAFEMGGVDYISKPFQMEEVLVRVKNQL 141


>gi|170748282|ref|YP_001754542.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654804|gb|ACB23859.1| response regulator receiver modulated diguanylate cyclase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 457

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D   N++L    +    +  L   NG +A+ +  +   D++++D+ +  + 
Sbjct: 1   MSARVLIVDDLFPNVRLLETKLGLEYFDTLAAMNGRDAIAICEKGLCDLVLLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + +K +     IPV+ VTA     D  R    G + +++KP+  +     ++  +
Sbjct: 61  GFEVCRHLKNNPLTAHIPVVMVTALDQPADRLRGLDAGADDFLTKPVDDTALFTRVRSLV 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++ED   + +     +    ++     +  EAL  A +   D+ ++ + L    GL
Sbjct: 156 ARILLIEDRPGSAERLAGALRQH-HVVTVEPDPQEALRRAAEETFDLALVSLDLTGFDGL 214

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMETIKKY 119
            +  Q++     + +P+I +   A + D     R    G   ++ +P+  +  M  ++  
Sbjct: 215 RLCSQLRSLDRTRAMPLIML---AEEYDRARVVRGLDFGVHDFLMRPVDRNELMARVRTQ 271

Query: 120 IGE 122
           +  
Sbjct: 272 VKR 274


>gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
 gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
          Length = 1187

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K V+I +D+  N+      +E  G   +   +G EAL     H    +++MD+ + E+ G
Sbjct: 1065 KTVLIADDDVRNIFSMTKSLEKHGMKVISATDGKEALHQLDSHPETAIVLMDMMMPEMDG 1124

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T +I++    + +PVIAVTA AM GD E+    G   YISKP+ +      ++ ++
Sbjct: 1125 YESTARIRQHPHFKHLPVIAVTAKAMLGDREKCIAAGASDYISKPVDIDQLTSLLRVWL 1183



 Score = 93.7 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED+    K         GY  +    G   + LA+Q++P  I++DIQL    G E+
Sbjct: 799 VLIVEDDTAFGKALLGFTRKRGYKGIVAVRGDHGIALAQQYQPVAILLDIQLPVKDGWEV 858

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K +S  + IPV  ++  +M+   E   K G   +I+KPI++    +  +K 
Sbjct: 859 MEELKSNSATRHIPVHIMS--SMEVKRESRMK-GAVDFINKPIAMDQMKQMFQKL 910



 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 52/103 (50%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KKV+IVE+N  + +     +ET    +    +  E+++  +  + D +IMD+ + + +  
Sbjct: 919  KKVLIVEENARHAQALSYFLETFKVSSAIAGSVNESVDALKNKEVDCVIMDMGIPDKNAY 978

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            E+ + IK +  L+++P+I  T   +   EE   +   +  + K
Sbjct: 979  EMLETIKHNPGLEDLPIIIFTGKHLSSGEESRIRQYADTIVVK 1021


>gi|291448188|ref|ZP_06587578.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
 gi|291351135|gb|EFE78039.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
          Length = 1819

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1699 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1758

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  +++++
Sbjct: 1759 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1816


>gi|283852211|ref|ZP_06369484.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
 gi|283572437|gb|EFC20424.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
          Length = 305

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D+  ++ +  + + +  +      +G EAL L  +  PD+I++DI + ++ G 
Sbjct: 8   ARVLVVDDSPSHLAILTESLRSE-FDVRVATSGAEALRLVDETPPDLILLDILMPDMDGY 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K D   + IPVI +TA     DE +    G   YI KP+++ I    ++ ++
Sbjct: 67  EVCRRLKADFATRNIPVIFLTAKNDVADETQGLAIGAVDYIIKPVTVPIVQARVRTHV 124


>gi|238026723|ref|YP_002910954.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
 gi|237875917|gb|ACR28250.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
          Length = 1248

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN         L+  + Y      +G   L+ AR+ +PD+++ D+ +  + G 
Sbjct: 610 ARILVADDNADMRHYLNSLLGGA-YRVEAVADGARLLDAARRERPDLVLTDVMMPNLDGF 668

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +   ++ED  L+E+PVI ++A A +         G + Y+ KP S    +  I   +  
Sbjct: 669 AVRGALREDPRLREVPVILLSARAGEEARIAALDAGVDDYLVKPFSARELLARIGAVLER 728



 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 25   SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTA 84
             G+      + ++AL LA   +P  I++DI L  + G E+ ++++     ++  ++AVT 
Sbjct: 1153 EGHQVKVAYSALDALALAPSFEPSAILLDIGLPGMDGHEVARRLRAMPAGRDAQLVAVTG 1212

Query: 85   FAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +    D ER    G +A++ KP++++      ++  G 
Sbjct: 1213 YGQAADRERALAAGFDAHLVKPVAMAQL----QRLFGR 1246


>gi|228991332|ref|ZP_04151289.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768395|gb|EEM17001.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 238

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++ ++IV+D    +++ R  +E  G+  L+ R+G  AL   ++ K D+ I+DI +  I+
Sbjct: 1   MVRTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++++ +   +P+I ++A   + D+      G + +ISKP SL   +  I+  +
Sbjct: 61  GYELIKIVRKEYK---MPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
 gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED++   +     +++ GY   Q  +G+E L++  + +  + I+D+ +  + G
Sbjct: 3   MNHVLIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEEIHLAIVDVMMPRMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++T +++E  +    PVI ++A + + D+      G + Y++KP +    +  +   + 
Sbjct: 63  IQMTIKLREKYDF---PVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|153840529|ref|ZP_01993196.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
 gi|149745809|gb|EDM56939.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   G+   +  +G   L        D+I++D+ + +++G
Sbjct: 1   MANILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAVNS-DIDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E+ E    PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|3850150|emb|CAA21950.1| histidine kinase [Candida albicans]
 gi|238883421|gb|EEQ47059.1| hypothetical protein CAWG_05614 [Candida albicans WO-1]
          Length = 1081

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N KL   ++E  G+      NG+EA E  +++K DV++MD+Q+  + G E
Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934

Query: 64  ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M+T
Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994

Query: 116 IKKYI 120
           I K I
Sbjct: 995 INKCI 999



 Score = 33.6 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 15  MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74
           + + RD I   G I +  RN  +A  L    K D+I+       I  +EI K+++  SE+
Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813

Query: 75  QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + IP++ V     + +       G  +Y + P S++     I
Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855


>gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator
           [Ralstonia eutropha JMP134]
 gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia eutropha JMP134]
          Length = 224

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     +  R  +  S ++      G + L  A +H+ D+II+D+ L  +SG +
Sbjct: 2   KILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVMLPGMSGWD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++E    ++ PV+ +TA     D  R  + G + Y++KP +    +  ++  +  
Sbjct: 62  VLRQLRER---KDTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRR 117


>gi|28899632|ref|NP_799237.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260895491|ref|ZP_05903987.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|28807884|dbj|BAC61121.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088063|gb|EFO37758.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|328472243|gb|EGF43113.1| transcriptional regulator CpxR [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   G+   +  +G   L        D+I++D+ + +++G
Sbjct: 1   MANILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS-DIDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E+ E    PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|2911164|dbj|BAA24952.1| CaNIK1 [Candida albicans]
          Length = 1081

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N KL   ++E  G+      NG+EA E  +++K DV++MD+Q+  + G E
Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934

Query: 64  ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M+T
Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994

Query: 116 IKKYI 120
           I K I
Sbjct: 995 INKCI 999



 Score = 33.6 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 15  MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74
           + + RD I   G I +  RN  +A  L    K D+I+       I  +EI K+++  SE+
Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813

Query: 75  QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + IP++ V     + +       G  +Y + P S++     I
Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855


>gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120]
 gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D          ++   GY       G    E+A     D++I+D  L   +GLE
Sbjct: 8   RILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGLE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++   ++   PV+ +TA     D  +    G + Y+ KP  L   +  ++  +  +
Sbjct: 68  ICQELRRQGKI--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 125


>gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 220

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED +         +   GY      +G E L  A +   D++I+DI L  ++G  
Sbjct: 2   RLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIMLPGMNGYR 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++      E+P++ +TA   + DE      G + Y++KP S  + +  +K  +  
Sbjct: 62  VCAALRA--AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118


>gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 899

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   R  +E  G   L+  NG+E L + +   + D ++MDI + E+ G
Sbjct: 772 KHILIVDDDYRNIYALRQALEHKGVHILEASNGVECLNILQTATRVDAVLMDIMMPEMDG 831

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  ++I++D +L E+P+IA+TA AMK D++R  + G   YISKP++L      +  ++
Sbjct: 832 YETMERIRKDLQLHELPIIALTAKAMKQDQDRAFEAGASDYISKPLNLEQLFSVLTVWL 890


>gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1461

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1203 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1261

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +  + +    G  AYI+KP S    +  I + + E
Sbjct: 1262 MLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1320


>gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G EAL++  +   D+ ++D+ L  I G
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++  +++ +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 64  LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G EAL++  +   D+ ++D+ L  I G
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++  +++ +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 64  LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|227529808|ref|ZP_03959857.1| two component response regulator [Lactobacillus vaginalis ATCC
           49540]
 gi|227350292|gb|EEJ40583.1| two component response regulator [Lactobacillus vaginalis ATCC
           49540]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED E   ++ +  +E SGY      NG  A+EL++++  D II+DI +   +G+E
Sbjct: 6   RILLAEDEEQLARVLKMAMEQSGYQVDAVENGQAAVELSQKNAYDAIILDIMMPIKNGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             K+I+   +     ++ +TA A + D       G + Y++KP SL   +  ++     A
Sbjct: 66  ALKEIRARGD--RTYIMMLTAMAEEDDRVNGLDSGADDYLTKPFSLKELLARLRSLERRA 123


>gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
 gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
          Length = 798

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 69/114 (60%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IVEDN+ N  L   L+E  G       +G+EA++  + +K D+I+MD  +  ++G+E +
Sbjct: 679 LIVEDNKTNQMLLSILLEDFGLTYDVANDGLEAVDKVKNNKYDLILMDENMPNMNGIEAS 738

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             I++    ++I +IAVTA A+KGD E+  + G + YISKPI      + ++KY
Sbjct: 739 STIRKLEHTKDIVIIAVTANALKGDREKFLENGMDDYISKPIDTDELEKILRKY 792


>gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 224

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+GL+
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|77022892|ref|XP_888890.1| hypothetical protein CaO19_5181 [Candida albicans SC5314]
 gi|76573703|dbj|BAE44787.1| hypothetical protein [Candida albicans]
          Length = 1081

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N KL   ++E  G+      NG+EA E  +++K DV++MD+Q+  + G E
Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934

Query: 64  ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M+T
Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994

Query: 116 IKKYI 120
           I K I
Sbjct: 995 INKCI 999



 Score = 33.6 bits (77), Expect = 9.6,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 15  MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74
           + + RD I   G I +  RN  +A  L    K D+I+       I  +EI K+++  SE+
Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813

Query: 75  QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + IP++ V     + +       G  +Y + P S++     I
Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855


>gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D +    L    +   G+   +  N  +AL+L      D++I+DI L+++ 
Sbjct: 1   MNDKIIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALDLVEAENFDLMILDIMLEDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+E       P+I +T+     D+      G + YI+KP +    +  +K  +
Sbjct: 61  GFSVCKKIREKHYF---PIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 930

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++ EDN++N    +  +  +G       +G EAL   +    D+++MDIQ+ E+ G E
Sbjct: 689 TVLLAEDNQVNRLFLKHFLSEAGCEVRLAGSGGEALAQLQNGPVDLVLMDIQMPEMDGTE 748

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK+I+        + +PV+A+TA++MKGD ER    G + Y+SKP+ +      +++ +
Sbjct: 749 ATKRIRAGEAGEANKGLPVVALTAYSMKGDRERFLSAGLDDYVSKPVDVDELFMVMRRVL 808

Query: 121 GE 122
             
Sbjct: 809 DR 810


>gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 753

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/117 (39%), Positives = 75/117 (64%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++ EDN LN +L + LI + G+  +   NG+EA+ L  + K D++++D+ +  + GL
Sbjct: 636 KTILVAEDNGLNQELMKLLIRSMGHHCIVVGNGLEAITLLEKEKFDLLLLDMHMPVMDGL 695

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E  + I++   L ++PVIA+TA AMKGDEER  + GC  Y+SKPI   +  E I++ 
Sbjct: 696 ETIENIRKSPALSDLPVIALTASAMKGDEERFIEAGCNGYLSKPIDRKLLAEMIERI 752


>gi|254442840|ref|ZP_05056316.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257148|gb|EDY81456.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 575

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K++IVEDN +N  +   L+E + +      NG+EALE       D+I MD  + ++ G
Sbjct: 449 SAKILIVEDNRINQHVIESLLERASHTVHIAANGLEALEKVETDTYDIIFMDCLMPKLDG 508

Query: 62  LEITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            E  ++I+        +E P+IA+TA A   D E   + G + +++KP+     +  + +
Sbjct: 509 YEAARRIRALPPENGNRETPIIALTANAFAQDRELCFESGMDDFLAKPVKKDTLLGVVNR 568

Query: 119 Y 119
           Y
Sbjct: 569 Y 569


>gi|171059157|ref|YP_001791506.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776602|gb|ACB34741.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED     +L  D +  +GY      +G++ L   RQH PD+I++D+ L    GL 
Sbjct: 8   HVLVVEDEPRLARLVSDYLVAAGYTTRIVDHGLDVLPAVRQHAPDLIVLDLMLPGRDGLS 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      E+PVI +TA   + D     + G + YI KP S    +  +K  +  
Sbjct: 68  LCQELR---RFSEVPVIMLTARVEEVDRLIGLEAGADDYICKPFSPREVVARVKAVLRR 123


>gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
 gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
          Length = 253

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
           K++IV+D +   KL    ++  GY  L+  NG +A++L R++   D+IIMDI + E+SG 
Sbjct: 26  KILIVDDEKDIRKLVGIYLKRQGYQILEAENGKQAIDLVRENSDIDLIIMDIMMPEMSGT 85

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E    I+E      +PV+ +TA   + D+      G + ++SKP   S  +  +K  I  
Sbjct: 86  ESCSAIRE---FSSVPVLFLTAKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALIRR 142


>gi|154492193|ref|ZP_02031819.1| hypothetical protein PARMER_01827 [Parabacteroides merdae ATCC
           43184]
 gi|154087418|gb|EDN86463.1| hypothetical protein PARMER_01827 [Parabacteroides merdae ATCC
           43184]
          Length = 372

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 64/114 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   N+ L + +++  GY  L T +G +AL +A++  P++I++DI + E+ G E
Sbjct: 9   TVLVVDDVPTNVMLVQAILKKEGYTLLTTDSGAKALRIAQERHPNLILLDIMMPEMDGYE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + + +K + E   IPVI ++A +      +  + G   Y++KP      ++ + 
Sbjct: 69  VLQHLKSNPETNNIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122


>gi|154483735|ref|ZP_02026183.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
           27560]
 gi|149735226|gb|EDM51112.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
           27560]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    + + +   +T  Y  L   +G EAL+     KPD+I++DI +  + GL 
Sbjct: 6   KLLIVDDERGIVDMIQSYFQTQ-YDILTAYSGQEALKKV-ACKPDLILLDINMPGMDGLT 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +QI+E       P++ +TA     D+    + G + YI KP  L      I  ++  
Sbjct: 64  VCQQIREHIA---CPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRR 119


>gi|119898702|ref|YP_933915.1| transcriptional regulator [Azoarcus sp. BH72]
 gi|119671115|emb|CAL95028.1| transcriptional regulatory protein [Azoarcus sp. BH72]
          Length = 124

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 67/121 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I +D +  +     L++  G+  +   +G EA+ + R  +PD++++D+ + + S
Sbjct: 1   MTKKILIADDEQNIVISLEFLMKREGFTVVVATDGDEAVRMIRAEQPDLVLLDVMMPKKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++IK D  LQ + ++ +TA     +  +    G +AY++KP S    +  ++  +
Sbjct: 61  GFEVCQEIKADPALQGVRILMLTAKGRDTEVAKGLALGADAYMTKPFSTRDLVARVRSML 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|332667142|ref|YP_004449930.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
            hydrossis DSM 1100]
 gi|332335956|gb|AEE53057.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
            hydrossis DSM 1100]
          Length = 1099

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIET--SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
             ++++VEDN+ N  + ++ +E    G       NG+ A+E  +    DVI+MD+Q+  ++
Sbjct: 977  ARILLVEDNQFNAVVAQEELEDAIEGVQVELAENGLIAVEKLKSSTFDVILMDVQMPTMN 1036

Query: 61   GLEITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E TK I+    E    P+IA+TA  +K + +   + G   +I KP   +  ++ I + 
Sbjct: 1037 GFEATKAIRNFGNEKAHTPIIAMTANVLKEEVDLCYEAGMNDFIGKPFDTTELLQKIHQL 1096

Query: 120  IGE 122
            I  
Sbjct: 1097 IKR 1099


>gi|325846727|ref|ZP_08169642.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481485|gb|EGC84526.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I +D +   +  +  +E +G+  ++   G EAL++A + KP V I+DI L  IS
Sbjct: 1   MSNKILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+   I++  +  ++ +I V+A +   D+    + GC+ YI KP +    +  ++  +
Sbjct: 61  GYEVCDTIRK--KYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5]
 gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN     +        G+ A    +G+E  +   +   D+II+DI L  + G+ 
Sbjct: 2   KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+E      +P+I +TA   + D+    + G + Y++KP S    +  IK  I  
Sbjct: 62  ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117


>gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 1018

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN +N ++   L+E  G+    T +G +A++   +   D+++MD+Q+ E+ G E
Sbjct: 764 RVLVAEDNPVNQRVVLRLLEKFGHAVTMTADGRQAVDALSREPFDIVLMDVQMPEMDGFE 823

Query: 64  ITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T+ I+       +   ++A+TA AMKGD ER    G + Y+SKP+  S     + +
Sbjct: 824 ATQVIRRREAGTGRHTLIVAMTAHAMKGDRERCLIAGMDDYVSKPVQRSELTRVLDR 880



 Score =  112 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59
           ++IV+DN  N ++  + +   G     + +G E L+  R          ++++D  +  +
Sbjct: 612 ILIVDDNATNRRVLAETVRHWGAKPTCSASGPEGLDELRWAAATGKPFPLVLLDGMMPGL 671

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G    ++I  DSEL    V+ +T+   +GD  R R+ G  AY+ KP+  +     I   
Sbjct: 672 DGFSTAERIVGDSELAGTAVLMLTSADRQGDAARCREIGVAAYLVKPVKSAELSRAIAAA 731

Query: 120 IG 121
           + 
Sbjct: 732 LR 733


>gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673]
 gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML+K+++V+D +    L    ++       +  +G EAL        D+ I+DI L +IS
Sbjct: 1   MLEKILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I + I+        PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLSICQSIRSKEYTY--PVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|312863278|ref|ZP_07723516.1| response regulator SaeR [Streptococcus vestibularis F0396]
 gi|322516455|ref|ZP_08069377.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|311100814|gb|EFQ59019.1| response regulator SaeR [Streptococcus vestibularis F0396]
 gi|322125048|gb|EFX96454.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + +    +  +GY  L   +G E LEL R+   D+II DI +  + 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++       + P +  TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 951

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN +N  +   ++E SG       NG EAL++  + + D+I MD Q+  + G   
Sbjct: 673 VLLVEDNPVNQDVATAMLECSGCRVSVANNGAEALDVMTRRRFDLIFMDCQMPVMDGYAA 732

Query: 65  TKQIKEDSELQEI-----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T+ I++     +       +IA+TA AM+GD E     G + Y++KP + +  +  ++++
Sbjct: 733 TRAIRQCEGNSQAGSGRRTIIALTAHAMRGDREECFAAGMDDYLTKPFTQAQLVAVLQRW 792

Query: 120 I 120
           +
Sbjct: 793 L 793



 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
           + ++V+DN  N+ +    +   G  A    N   AL L R     +   D+ I+D+ + E
Sbjct: 527 RALLVDDNSTNLSIMHHELHAWGMTADMADNAATALGLMRHAARAESPYDLAILDMLMPE 586

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+E+ + IK + +L +  ++ VT+    GDE    K G   YISKP+  S     I  
Sbjct: 587 MNGIELARAIKANPDLAQTRLLMVTSVGQYGDEAEAVKAGIGCYISKPVRQSRLYSAIID 646

Query: 119 YIG 121
            +G
Sbjct: 647 LLG 649


>gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G EAL++  +   D+ ++D+ L  I+G
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++  +++ +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 61  LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|224588363|gb|ACN58987.1| GAF sensor hybrid histidine kinase [uncultured bacterium BLR19]
          Length = 2129

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K +++V+D+  N+     + E      +   +G EA+ +  ++   ++++MDI + E+ G
Sbjct: 2009 KNILVVDDDVRNLFALTTVFERFNINVITAESGKEAINILNENPKIEMVLMDIMMPEMDG 2068

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             E T++I+ + +   +P+IAVTA AMKGD ++  + G   YI+KP+ +   +  ++
Sbjct: 2069 YETTQKIRREHKNSSLPIIAVTAKAMKGDRQKCIEAGASDYITKPVKIDQLLSLMR 2124



 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 3/108 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VED+    ++  +    +G  A+   N +E  +   +  P  I +D++L E SG ++
Sbjct: 1744 VLVVEDDLRFGRIIIEKAHENGLKAIVATNYLEVFDFINRFMPIAITLDVKLPETSGWKV 1803

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
               ++ D   + IP+  ++    + ++    K G  ++I KP++  I 
Sbjct: 1804 IDLLRNDLTYRHIPIHVISG---EENKVLALKRGARSFILKPLNNDIL 1848



 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 2/113 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K ++IVEDNEL+      + +    +        EALE       D II+D  L ++ G 
Sbjct: 1864 KSILIVEDNELDSSQIAKMHDDEKLLITIAGTAKEALEKVATEDFDCIILDYTLPDMPGQ 1923

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+  ++   ++    PVI  +A      E         ++I K + S+   +E
Sbjct: 1924 ELLSEV-SKAKKNLTPVIVYSAKDFNKSELNNVNLHSSSHIVKGVNSIEYLLE 1975


>gi|255598170|ref|XP_002536943.1| sensory transduction histidine kinase, putative [Ricinus communis]
 gi|223518029|gb|EEF25440.1| sensory transduction histidine kinase, putative [Ricinus communis]
          Length = 262

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++IV+D     ++  +L+ +SG+      +G +  + A   KPD+I++D+++  + G
Sbjct: 13  SYRILIVDDTPEQQRILLELLRSSGFNVTLAFDGHQGYQRALSSKPDLILLDVRMARMDG 72

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               + +K D+   +IPVI +TA     +     K G   YISKP      +  I  ++
Sbjct: 73  FATCRLLKADAATHDIPVIFLTAAGAPDERINGLKMGGVDYISKPFVPEEVIARINIHL 131


>gi|218256920|ref|ZP_03474405.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM
            18315]
 gi|218225884|gb|EEC98534.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM
            18315]
          Length = 1312

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN   + L ++ +    Y+  +  N  EAL L  Q  PD+II DI +  + G  +
Sbjct: 1064 ILVVDDNRDIVWLIKETLSFE-YVVREAFNAEEALALMEQQTPDLIITDIMMPSMDGFAL 1122

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +IK D   + IP+I V+A   + ++      G +AY++KP S  +    + + +
Sbjct: 1123 ISRIKSDKFTRHIPLIVVSAKVSENEQAEGLDLGADAYLTKPFSSVVLHSVVNRLM 1178


>gi|148240607|ref|YP_001225994.1| CheY-like domain-containing protein [Synechococcus sp. WH 7803]
 gi|147849146|emb|CAK24697.1| CheY-like receiver domain [Synechococcus sp. WH 7803]
          Length = 124

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 68/119 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDNELN  +    +   G+      +G  A+E A   +PD+I+MDI L  I G + 
Sbjct: 4   ILLVEDNELNRDMLSRRLTRKGFTVEMAFDGAAAIERANALQPDLILMDIGLPVIDGFDA 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           T+++K+D + Q IPVIA+TA AM  D E     GC+ + +KPI L   +E I   +  +
Sbjct: 64  TRRLKDDPQTQAIPVIALTAHAMMQDREACLSAGCDDFDTKPIDLPRLLEKINNLLERS 122


>gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              ++++ED     +     +   GY      +GM  L  A    PD++++D  L  ISG
Sbjct: 8   SAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++++       +PV+ +TA     D       G + Y+ KP S+   +  I+ Y+ 
Sbjct: 68  LEICRRLRSTGN--RVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR 125

Query: 122 E 122
           +
Sbjct: 126 Q 126


>gi|34541418|ref|NP_905897.1| DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas gingivalis W83]
 gi|34397735|gb|AAQ66796.1| DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas gingivalis W83]
          Length = 961

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VEDN+    L   L+    Y  L   NG E + LA +H PD+II DI +  + G+E
Sbjct: 698 TILLVEDNKDI-NLLVKLLLCDRYNVLSAANGKEGIALATEHIPDIIITDIMMPIMDGIE 756

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +T ++K+   L  IP++A+TA + + D     K G  +Y+ KP S    +  I++ +
Sbjct: 757 MTIRMKQSPLLCHIPIVALTAKSTEQDRLEGIKSGVVSYLCKPFSPEELLMRIEQLL 813


>gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 223

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED          +++  G++   + +G  A +L      D++I+D  L   SGL+
Sbjct: 2   HLLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWMLPGHSGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + +PV+ +TA      +    + G + Y+ KP  L   +  ++  +  
Sbjct: 62  LCRRLRA--GGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRR 118


>gi|325273064|ref|ZP_08139372.1| response regulator receiver protein [Pseudomonas sp. TJI-51]
 gi|324101798|gb|EGB99336.1| response regulator receiver protein [Pseudomonas sp. TJI-51]
          Length = 121

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 67/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IV+D+   M      +E +G+  L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARVLIVDDSPTEMTSLTQFLEKNGHEVLKANNGADGVALARQEKPDAVLMDIVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T+Q+ +D E   IPVI VT    + D     + G   +++KP+     +  +K+ +G
Sbjct: 61  FQATRQLSKDPETSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVGEEALIAKLKEVLG 120


>gi|320333043|ref|YP_004169754.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319754332|gb|ADV66089.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 1349

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ +DN         L++ + Y      +G +A+  A    PD+++ D+ +  + G  +
Sbjct: 622 VLLADDNADLRAYVTRLLDDT-YEVHAVTDGEQAVTAAHDRTPDLVLSDVMMPNLDGFGV 680

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++ D     +PVI ++A A +       + G + Y+ KP S       +  ++
Sbjct: 681 LRALRADERTHAVPVILLSARAGEEARLDGLEAGADDYLVKPFSARELRSRVHTHL 736


>gi|285019533|ref|YP_003377244.1| two-component system regulatory protein [Xanthomonas albilineans
           GPE PC73]
 gi|283474751|emb|CBA17250.1| probable two-component system regulatory protein [Xanthomonas
           albilineans]
          Length = 237

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN    ++  + +E  G+      +G++   LA ++  DV+++D+ L  + G+E+
Sbjct: 11  VLVVEDNRNISEMIGEYLEGRGFEVDYACDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 71  CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 127


>gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      +G +AL+       D+I++DI +  I 
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|182435566|ref|YP_001823285.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
 gi|178464082|dbj|BAG18602.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1840

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1720 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1779

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  +++++
Sbjct: 1780 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1837


>gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     ++  GY  ++  NG   LE+A + + D+I++DI L EI+G
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++++      +IP+I +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6]
 gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
 gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus
           CMCP6]
 gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
          Length = 239

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
 gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
          Length = 1053

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 67/116 (57%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D ELN  L R+L  T+G       NG EA+      KPD+++MD Q+  + G   
Sbjct: 791 ILVVDDIELNRDLMRELFATAGLNIRLACNGREAITAIHSKKPDLVLMDCQMPVMDGFSA 850

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++++   E  E+P+IA+TA A+  D E+    G  AY++KP++L   +  I + +
Sbjct: 851 TRELRARPEYAELPIIALTAGALDHDREQCLAAGMNAYVTKPVNLEKLLRVIAEQL 906



 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQ-EI 59
           + V+I +DN    +      +  G +     +G  AL             ++D  L   +
Sbjct: 644 RTVLITDDNPFAAQALAAQCQQLGLLTETCPSGESALAALNHPGANYLAALIDWHLPAGL 703

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAYISKPISLSIFMETIKK 118
            G+E  K+I+ +  +Q  P+I ++  + K            +A + KP S+      + +
Sbjct: 704 DGVETMKRIRSNLGVQAPPLILLS--SQKASGASALDDLPADALLIKPCSVRHLYAALAR 761


>gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory
           protein TCRA [Mycobacterium bovis AF2122/97]
 gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium bovis AF2122/97]
 gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 253

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED      L    +   G+      +G  A+        D +++D+ L  I G E
Sbjct: 24  RILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++        PV+ +TA     D      GG + Y++KP +L      ++     
Sbjct: 84  VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|83945514|ref|ZP_00957861.1| response regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83851090|gb|EAP88948.1| response regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 121

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/120 (65%), Positives = 104/120 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+IVEDNELNMKLFRDL+E  GY  +QT  G++AL++AR+HKPD+I+MDIQL E+S
Sbjct: 1   MSKKVLIVEDNELNMKLFRDLLEAHGYETVQTSEGLKALDMAREHKPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++TK IK D EL  IPV+AVTAFAMKGDEERIR+GGCE Y+SKPI+++ F++T++ ++
Sbjct: 61  GLDVTKWIKNDDELSAIPVVAVTAFAMKGDEERIREGGCEGYLSKPITVASFIKTVRDFL 120


>gi|329934372|ref|ZP_08284451.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305968|gb|EGG49823.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+    +     +   G+       G + LE      PD++++D+ L  +SG
Sbjct: 1   MTRVLLIEDDPAVRRGVTLGLRRRGHETEAVATGEDGLEALAASPPDLVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+E     ++PV+ ++A     D     + G + YI KP S  +    ++  + 
Sbjct: 61  LEVCRRIRE---TSQVPVVILSARGDDIDVVVGLEAGADDYIVKPSSDEVIEARMRAVMR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E   ++ +   E  G+  ++  +G++A+E AR+   DVI+MDI +  + G
Sbjct: 1   MFKILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKAREQDFDVIVMDIMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+IK+    + IPV+ ++A   + D+    + G + Y+ KP S    M  +   + 
Sbjct: 61  FSAYKEIKK---TKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVT 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|294646909|ref|ZP_06724530.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292637854|gb|EFF56251.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1347

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VEDN+      ++ +E   Y  ++  +G E    A +  P++II DI + ++ G+
Sbjct: 1095 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1153

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ ++IK + +   IPVI +TA      +    + G ++Y+SKP +  + M  I+K I +
Sbjct: 1154 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1213


>gi|293556317|ref|ZP_06674900.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291601517|gb|EFF31786.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
          Length = 160

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+     L+R ++E +G+  +   NG +AL+       ++II D+ + E+ G
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  +   ++PV+ +TA A   D++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 61  YDLVGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|237745639|ref|ZP_04576119.1| response regulator receiver:Transcriptional regulatory protein
           [Oxalobacter formigenes HOxBLS]
 gi|229376990|gb|EEO27081.1| response regulator receiver:Transcriptional regulatory protein
           [Oxalobacter formigenes HOxBLS]
          Length = 223

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+EDN+       D +E  G+    T +G++AL L      D+II+DI L  + G
Sbjct: 1   MAKILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQSFDLIILDIMLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++++      E PV+ ++A     D  +    G + Y+ KP SL+     I   + 
Sbjct: 61  LDLCRELRARGN--ETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|225386432|ref|ZP_03756196.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme
           DSM 15981]
 gi|225047463|gb|EEG57709.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme
           DSM 15981]
          Length = 121

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IV+D+    +L    +    Y  +   +G EAL +    KP+++++D+ L  + G 
Sbjct: 5   QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPDFKPNLVLLDLMLPGMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++  S+   +P+I ++A     D+    + G + Y+ KP      +  +K  +  
Sbjct: 65  QVCRELRTSSQ---VPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121


>gi|261406712|ref|YP_003242953.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283175|gb|ACX65146.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D++  ++L RD +E   +      +  EA  + +QH    +++DI +   +G E
Sbjct: 6   TILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+ +S    +P++ ++A +   D+ R    G + YI K  S +  +  +K  +  +
Sbjct: 66  LCRRIRAESP---VPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRS 122


>gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family
           [Pelobacter carbinolicus DSM 2380]
          Length = 223

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED +      +  +E   +      +G E L LA  +  D+I+MD+ L +  GLE
Sbjct: 2   RVLVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLMLPKKDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++        PV+ +TA     D       G + Y++KP + S  +  +K  +  +
Sbjct: 62  VIKELRTKDVT--TPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRS 119


>gi|313496636|gb|ADR58002.1| GltR [Pseudomonas putida BIRD-1]
          Length = 239

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D++   +L  D +  +GY  L   +G +  +   +HK +++++D+ L    
Sbjct: 1   MSTTLLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +Q++    L    VI ++A     D     + G + Y++KP      +  IK  +
Sbjct: 61  GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|284046955|ref|YP_003397295.1| response regulator receiver protein [Conexibacter woesei DSM 14684]
 gi|283951176|gb|ADB53920.1| response regulator receiver protein [Conexibacter woesei DSM 14684]
          Length = 134

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 68/117 (58%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +++E  + L    +E +GY  L  R+G EAL  AR+  PD+ ++D+ + E++G +
Sbjct: 7   RILVADNDEDILTLVAFRLERTGYEVLVARDGAEALARAREELPDLCVLDVMMPELTGYD 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +T++++ D   + IPVI +TA   + D +R    G +AY+ KP S     + +   +
Sbjct: 67  VTRRLRSDPLTRAIPVILLTARVQEADVDRGFDAGADAYVRKPFSPQELRDRVAAAL 123


>gi|190572846|ref|YP_001970691.1| putative two-component system response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|190010768|emb|CAQ44377.1| putative two-component system response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 248

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN    ++  + +E  G+     ++G++   LA ++  DV+++D+ L  + G+E+
Sbjct: 22  VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 82  CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 138


>gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1310

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 67/118 (56%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             KV++VEDNE+N +L  +L+  SG +     NG EA+ L      D I+MD Q+  + G 
Sbjct: 944  AKVLLVEDNEINRELAEELLSRSGILFTSATNGQEAISLLGSDDFDCILMDCQMPIMDGY 1003

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              TK+I+  ++ ++IP+IA+TA  M  D +  +  G   +I+KPI       T++ ++
Sbjct: 1004 TATKKIRTMTQYKDIPIIAMTANVMPEDIKYAKASGMNDHIAKPIHFETMFNTLRTWV 1061



 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQEI 59
           VM+V+DN    ++ +  +E  G       +G EA++      A      ++++D ++ E+
Sbjct: 797 VMVVDDNNSAREVLKASVEALGLSCHTCSSGHEAIQYIASLKASSQPYPLMLIDWKMPEL 856

Query: 60  SGLEITKQIKEDSELQEIP--VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            G++  K I  ++   + P  +I VTA       +        AY++KP++ S   + I
Sbjct: 857 DGIDTCKAILAETR-DDTPLTIIMVTAHRQDDARKAGYGLPISAYLTKPVTTSSLFDQI 914


>gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB]
 gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 853

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+ +N ++ + ++E  G       +G EAL+   Q    +++MD+Q+  + GLE 
Sbjct: 732 VLLVEDDPINREVAQMMVEEVGLAIDVAEDGCEALDKVSQTNYALVLMDMQMPRMDGLEA 791

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++I+     + +P++A+TA A   D ER    G   ++SKP++  +    + +++
Sbjct: 792 TRRIRLLENRKNLPILAMTANAFAEDRERCMAAGMNDFVSKPVNPDLLYAALLRWL 847


>gi|29345776|ref|NP_809279.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337669|gb|AAO75473.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1420

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN       R ++    Y  L+  NG EAL +   +  D II D+ +  + G+E+
Sbjct: 1169 ILVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNPIDFIISDLMMPVMDGIEL 1227

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++KE   +  IP + +TA   +       + G + Y+ KP   ++ +  I+  +
Sbjct: 1228 SRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLARIQNIL 1283


>gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329]
          Length = 239

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|319900357|ref|YP_004160085.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415388|gb|ADV42499.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 1300

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 66/118 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++IV+DN+   +     ++          +G EAL++ R+  PD ++ DIQ+  ++G 
Sbjct: 1049 RTLLIVDDNKDLTEYLSAALKGCFKETKVAYDGEEALKICRESPPDAVVSDIQMPRMNGY 1108

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ KQIKED ++  IPVI +TA   +  +    K G +AY++KP  +++   TI   +
Sbjct: 1109 ELCKQIKEDLKISHIPVILLTARNDEESQIFGYKNGADAYLTKPFDVNMLYITIHSQL 1166


>gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+I+ED E   +    ++   G+      +G + LE   ++  D++++D+ +  + G
Sbjct: 1   MTRVLIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGADIVLLDLMMPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++      + +I VTA   + D+    + G + Y++KP S    +  I+    
Sbjct: 61  TEVCRQLRQRG---NVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             KV++V+D      L +  ++  G+      +G  AL++  +++PD  I+D+ +  + G
Sbjct: 8   STKVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMPGMDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  +++      + PV+ +TA     D       G + Y++KP SL   +  ++  + 
Sbjct: 68  FSLLNKLRAKGH--DAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILR 125

Query: 122 E 122
            
Sbjct: 126 R 126


>gi|289671038|ref|ZP_06492113.1| two-component system response regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 264

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+IV+D     +     +   GY  LQ     E L L      +++++DI L +  G 
Sbjct: 37  ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLALLAGQGAELVVLDIGLPDRDGH 96

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++      +PVI +T  A + ++      G   Y++KP  +   M  I+  + +
Sbjct: 97  EVLREIRQ---WSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 153

Query: 123 A 123
           A
Sbjct: 154 A 154


>gi|284051622|ref|ZP_06381832.1| response regulator receiver Signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
 gi|291570873|dbj|BAI93145.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 369

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 60/116 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+++ED E   +   +L+E   +  +   NG   ++ A +H PD+I+ D+ + E+ G
Sbjct: 1   MAKVLVIEDEETIRENLVELLEIEDFDVISAENGKLGVQQAHKHLPDLILCDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             + K+++   E   IP I +TA A + D       G + Y++KP S+   +  I 
Sbjct: 61  YGVLKELRSHMETATIPFIFLTAKADRDDLREGMNLGADDYLTKPCSMEELLTAIA 116


>gi|239944730|ref|ZP_04696667.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 15998]
 gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 11379]
          Length = 1809

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1689 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1748

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  +++++
Sbjct: 1749 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1806


>gi|228990905|ref|ZP_04150869.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
 gi|228768842|gb|EEM17441.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
          Length = 245

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+   ++L    +    +  L+   G EAL +   +   ++I+DI +  + G+E+
Sbjct: 19  ILIVDDDADIVQLIEVHLRQEEFRVLRAYTGGEALNILDINDIQLVILDIMMPAMDGIEV 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      IPV+ ++A A   D+      G + YI+KP S+   +  +K  +  
Sbjct: 79  CRRIRER---HTIPVMFLSAKATDIDKVIGLSTGADDYITKPFSMMELVARVKAQLRR 133


>gi|114706443|ref|ZP_01439345.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
 gi|114538304|gb|EAU41426.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
          Length = 246

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 63/123 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V +VED E    L R  +E  GY       G EA    ++  PD++++D  L  +S
Sbjct: 1   MSLRVTVVEDEEALGVLLRYNLEAEGYEVEVIARGDEADLRLKEDTPDLLVLDWMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI +++++  +  ++PVI +TA   + +  +    G + Y+ KP S+  F   +K  +
Sbjct: 61  GVEICRRLRQRPDTAQLPVIMLTARGEESERVQGLSVGADDYVVKPFSMREFTARVKAMM 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|315186523|gb|EFU20282.1| response regulator receiver protein [Spirochaeta thermophila DSM
           6578]
          Length = 241

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV+D E+N++ F  ++   G+   + R+G EAL + ++ +PD++++D  + ++SG 
Sbjct: 4   KKILIVDDEEINLEFFEIMLSKLGFEVYKARDGEEALLVMKEQRPDLVLLDNIMPKLSGW 63

Query: 63  EITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E+T+ +K++ + +    IP++  +A     D+    + G E YI+KP + S  +  I   
Sbjct: 64  EVTRIVKQEPDYRDVAHIPIVMFSAMDDVRDKIEGFELGVEDYITKPFNFSEVLARINSV 123

Query: 120 IG 121
           + 
Sbjct: 124 LR 125


>gi|297620372|ref|YP_003708509.1| two-component response regulator phoB [Waddlia chondrophila WSU
           86-1044]
 gi|297375673|gb|ADI37503.1| two-component response regulator phoB [Waddlia chondrophila WSU
           86-1044]
          Length = 231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K +++++ED E    L +   + SGY      +G+  L    + KPD++I+DI L   
Sbjct: 1   MQKSRLLLIEDEEDIAALIKLQADISGYKLHVEVDGLNGLLAIEREKPDLVILDIMLPGQ 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGL++ +++K + E ++IPVI ++A + + D     + G + Y++KP S  I    I+  
Sbjct: 61  SGLDVCRKLKNNPETKDIPVIMISAKSEELDVVLGLELGADDYVTKPFSPKILFSRIRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
            B-, and HSP90-like ATPase./Response regulator receiver
            domain./Two component regulator propeller./Bacterial
            regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
            domain. [Bacteroides xylanisolvens XB1A]
          Length = 1465

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1207 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKIHLYHPDIVVTDQMMPEMDGLE 1265

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + + E
Sbjct: 1266 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1324


>gi|290893701|ref|ZP_06556682.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556774|gb|EFD90307.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|307571948|emb|CAR85127.1| DNA-binding two-component response regulator [Listeria
           monocytogenes L99]
          Length = 237

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY   Q  +G E   L ++ +P ++I+DI + E++
Sbjct: 7   MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 66

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++++  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 67  GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 124

Query: 121 GE 122
             
Sbjct: 125 RR 126


>gi|256829197|ref|YP_003157925.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578373|gb|ACU89509.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 918

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 68/114 (59%), Gaps = 2/114 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ ED+E        L+E SG+      NG EALE+   +  D+I+MD+ +  + G+  
Sbjct: 796 ILLAEDDETTGFSISRLLEKSGHSVTLAHNGQEALEMHEANNFDLILMDVSMPVMDGIAA 855

Query: 65  TKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            ++I+   +S  +++P+IA+TA+AM GD+E+    G   Y++KP+++   M+ +
Sbjct: 856 CRRIRGSRNSHKRDVPIIALTAYAMAGDKEKFLAAGMSGYVAKPVTMETLMQMM 909


>gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
 gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    +    +++  Y   +   G EAL+     K D+ I+DI L +I G +I
Sbjct: 3   ILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYIGSMKIDLAILDIMLPDIDGFQI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            KQI+        PVI +TA     D+      G + YI KP +    +  +K  +  
Sbjct: 63  LKQIRGKYTF---PVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRR 117


>gi|210622859|ref|ZP_03293382.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
 gi|210153964|gb|EEA84970.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
          Length = 233

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 6/124 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K   ++I++D +  +KL    I+ +G+  L   +G E +E   +  PD+I++DI + +
Sbjct: 1   MTKLSTILIIDDEKDLVKLLGKKIKDNGHEVLVAFDGEEGIEK-SKLNPDLILLDIMMPK 59

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G E+ ++I+++      P+I ++A   + D+ R    G + YI+KP  L   +  I+ 
Sbjct: 60  IDGFEVCQKIRDNVV---CPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEA 116

Query: 119 YIGE 122
            +  
Sbjct: 117 NLRR 120


>gi|89899892|ref|YP_522363.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344629|gb|ABD68832.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 239

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED+EL        +  +G+      +G  A  L   ++ D +I+D+ L ++SG
Sbjct: 1   MSHLLIVEDDELLRDALGAQLTQAGHTVTPASDGERAQALLESNRFDGVILDLGLPKVSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ + +++   L  +PV+ +TA     D  +    G + Y++KP S++     +   + 
Sbjct: 61  MEVLRWLRK--RLPALPVLVLTARDGVEDRVQGLNAGADDYLTKPFSMAELQARLGAMLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|71905865|ref|YP_283452.1| PAS [Dechloromonas aromatica RCB]
 gi|71845486|gb|AAZ44982.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1214

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61
            ++++ ED   N  + RDL+E+ G       NG +A+E         D+I+MDIQ+ E+ G
Sbjct: 960  RILVAEDVPTNQLIMRDLLESLGATVEMADNGEQAIEQLAAAGDDIDLILMDIQMPEMDG 1019

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            LE T +I+   +   IP+IA+TA A++ + +R    G   +++KPI  +  +  I+++
Sbjct: 1020 LEATHRIRTGQKRANIPIIALTAHALEEERQRAAASGMNDFLTKPIEPANLINVIQRW 1077



 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEIS 60
            V++V+DN L   +   L++  G   L   +G  AL           D I++D+ + ++ 
Sbjct: 819 HVLVVDDNNLARSVLSSLLKKHGCTVLAAESGEAALAALHASAMTSFDCIMVDLNMPDMD 878

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+     Q   +I VT   +     R   G  +A + KP++       I + +
Sbjct: 879 GLALAQHIRS-ERGQSTKLIMVTGENVHSSRYRHALGDFDAIVEKPVTA----ARIGEVL 933


>gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073634|gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 248

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L  + ++++G   L   NG E   +  + + D+I++D+ L    GL 
Sbjct: 9   HILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGLT 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PVI +TA     D     + G + Y++KP         I+  +  
Sbjct: 69  LCRNLRA---TSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRR 124


>gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
 gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L    ++   Y   +     EAL      K D+ ++DI + +I G  I
Sbjct: 3   ILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMIPDIDGFTI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E       PVI +TA   + D+      G + YI+KP      +  +K  I  
Sbjct: 63  LRKIRE---TLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRR 117


>gi|283851135|ref|ZP_06368419.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573531|gb|EFC21507.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 886

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 72/121 (59%), Gaps = 3/121 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED+ +N    R L+E  G+      +G EA+++A   +PD+++MD+ +  + G++
Sbjct: 756 RILVAEDDAVNALALRRLLEKIGHAVSVAHDGQEAVDMALAGRPDLVLMDVGMPVLDGVQ 815

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E + L     IPVIA+TA AM GD E +   G + Y++KP+     +ET+ + +
Sbjct: 816 AMRLLREKTGLAGVAAIPVIALTAHAMAGDRENLLAAGMDGYVAKPVDREDLLETMGQVL 875

Query: 121 G 121
           G
Sbjct: 876 G 876


>gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  AL+   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++   E   +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLR--GEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|229125247|ref|ZP_04254353.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228658207|gb|EEL13941.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 221

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 9   EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68
           +D    + L    +   GY   +  +G EA+ L    +  ++++DI + E++G E   +I
Sbjct: 2   DDEPRMLDLLSLYLTPRGYHCTKATSGKEAISLVEAKEFRLLLLDIMMPEMNGWETCNKI 61

Query: 69  KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +E      +P+I +TA     D  +  K G + Y++KP      +  I+  +  
Sbjct: 62  RE---FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRR 112


>gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K++IV+D++  ++L    +E  GY   +  NG EAL       PD  ++I+D+ + ++ G
Sbjct: 2   KILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKL-NMNPDIALMILDVMMPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++++S+   IPV+ ++A     D+ +    G + Y++KP +    M  +K  + 
Sbjct: 61  MEVIREVRKESQ---IPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|225851028|ref|YP_002731262.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Persephonella marina EX-H1]
 gi|225645278|gb|ACO03464.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Persephonella marina EX-H1]
          Length = 354

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D+  N  L R   +  G+  ++ +NG EA++ A +   D+I+MD+ + ++ G 
Sbjct: 7   ATILIVDDDPQNRMLLRFFCKKWGFDVVECKNGAEAVKEANEKDIDIILMDLMMPKLDGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + +K + + + IPVI +TA        +  + G + + +KPI++      +K  +
Sbjct: 67  SALEVLKNNEKTKYIPVIILTAAEDTESRIKGIELGADDFFTKPINIHELKLRLKNSL 124


>gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter
           baumannii 1656-2]
 gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 319

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IPVI +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|157692516|ref|YP_001486978.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681274|gb|ABV62418.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQL 56
           M K   KV+I++D +  ++L   ++   G    +      + L    Q +PD++I+DI L
Sbjct: 1   MPKLQNKVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFHQEQPDLVILDIML 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +  G +I KQI+   ++  +P+I ++A   + D+      G + YI+KP S       +
Sbjct: 61  PDGEGYDICKQIR---DVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRV 117

Query: 117 KKYIGEA 123
           K  +  +
Sbjct: 118 KAQLRRS 124


>gi|78355304|ref|YP_386753.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78217709|gb|ABB37058.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 847

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ ED E+N      L+   G+      +G+  +EL + H+PD I+MDIQ+ ++ G+
Sbjct: 710 ARILLAEDEEVNRMAATYLLRKMGHTVTAATSGLHVIELLQDHEPDCILMDIQMPDMDGI 769

Query: 63  EITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E TK I+  + + L+ IP+IA+TA AMKGD+E     G + YISKPI  +     + + +
Sbjct: 770 ETTKVIRGGQIAGLENIPIIALTAHAMKGDKEIFLAAGMDGYISKPIDAAELQRELYRIL 829


>gi|282862260|ref|ZP_06271322.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282562599|gb|EFB68139.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1815

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    +++MDI + E+ G 
Sbjct: 1695 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTIVLMDIMMPEMDGY 1754

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  +++++ 
Sbjct: 1755 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDSDHLLSVMERWMR 1813


>gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 685

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 4/122 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VEDNE+N ++ R ++           NG EA+ +A Q   D+I MD+ +  + GL 
Sbjct: 562 KILLVEDNEINQEIARAMLRHLDIECDLAHNGREAVHMALQTCYDMIFMDVYMPVMDGLH 621

Query: 64  ITKQIKED----SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I+ +       + +P+IA+TA AM    + I   G + Y++KP +L      I ++
Sbjct: 622 ATREIRRNLPKAPHGKALPIIAMTAVAMPETMDEIMDSGMDDYLAKPFNLVTLRNKIVQW 681

Query: 120 IG 121
           +G
Sbjct: 682 LG 683


>gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 319

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IPVI +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|163735689|ref|ZP_02143120.1| DNA-binding response regulator [Roseobacter litoralis Och 149]
 gi|161391117|gb|EDQ15455.1| DNA-binding response regulator [Roseobacter litoralis Och 149]
          Length = 243

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M+    ++++V+D+          ++ +G  A   ++  +     + +  D+I++DI + 
Sbjct: 1   MMATPPRILVVDDHAEIRHSVTRYLKINGMRATGAKSAADMDAQLKDYTFDLIVLDIMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
              GL    +++   + Q IP++ +TA     D  +    G + Y++KP +    +  I 
Sbjct: 61  GEDGLAACARLRR--QHQSIPILMLTALGEDDDRIKGLDTGADDYLAKPFNPGELLARIN 118

Query: 118 KYIGEA 123
             +  A
Sbjct: 119 AILRRA 124


>gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
 gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
          Length = 282

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 48  KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 107

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 108 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 165


>gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+M+VED++   +L    +E  GY  +   +G++A+E  +   P+++I+DI L ++ G E
Sbjct: 6   KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +++     ++ ++ +TA  MK D+    + G + Y++KP      +  IK  +  
Sbjct: 66  VAQNLRKLK--PDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRR 122


>gi|332666853|ref|YP_004449641.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335667|gb|AEE52768.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1368

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN          +    Y     ++G+E  + A +  PD+II D+ +  + G  +
Sbjct: 1115 ILLVEDNPDVAAYLHSCLPE--YRLEFAKDGLEGFDKATELIPDLIISDVMMPRMDGFTL 1172

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++ D     IP+I +TA A    +      G +AY+ KP         IKK +
Sbjct: 1173 CQHLRNDERSSHIPIILLTAKADFESKLTGLDRGADAYLEKPFQPEELRLRIKKLL 1228


>gi|307331825|ref|ZP_07610925.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306882522|gb|EFN13608.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1484

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60
            ++++IV+D+  N+     ++   G       NG E LE+  ++ PD  +++MD+ + E+ 
Sbjct: 1278 RRILIVDDDIRNVFALTHVLGRVGMTVKYAENGREGLEVLHRN-PDVSLVLMDVMMPEMD 1336

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E  + I+    L ++P++A+TA  M GD E+    G   Y+ KP+ +   M  I + +
Sbjct: 1337 GYETIRAIRSTPRLADMPILALTAKVMPGDREKAIDSGANGYVPKPVDVDRLMSAIIELL 1396


>gi|304412088|ref|ZP_07393698.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307305983|ref|ZP_07585729.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304349638|gb|EFM14046.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306911476|gb|EFN41902.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1629

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
             +++VEDN+LN ++  +L+   G   +    GME + L  +     D++IMD+Q+ ++ G
Sbjct: 1287 TILVVEDNQLNRQVIDELLSYEGANVVLAEGGMEGVSLVLESGDLFDIVIMDMQMPDMDG 1346

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            LE T++I+ D     +P++A+TA A + D +     G   ++ KPI + + + +I + +G
Sbjct: 1347 LEATRRIRADERFAALPILAMTANASQSDRQECLNAGMNDHVGKPIDMPLLLPSILRLVG 1406

Query: 122  E 122
             
Sbjct: 1407 R 1407



 Score =  105 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
            +V++V+DNEL +++   ++   G        G  AL   +Q        DV++MD ++ +
Sbjct: 1142 RVLVVDDNELTVEILEKILTGFGCEVETALGGYSALAKVKQSHEKSTPFDVVLMDWRMPD 1201

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMK--GDEERIRKGGCEAYISKPISLSIFMET 115
            + GL+  + ++      + P V+ +TA+  +   + ++IR      +++KP++  I  E 
Sbjct: 1202 LDGLQTAEMLRNSDANNQTPLVVMLTAYGHEVIAESQQIRHVPFVNFLTKPVTSQILAEA 1261

Query: 116  IKKYI 120
            +   I
Sbjct: 1262 VLNAI 1266


>gi|295085039|emb|CBK66562.1| monosaccharide ABC transporter substrate-binding protein, CUT2
           family (TC 3.A.1.2.-) [Bacteroides xylanisolvens XB1A]
          Length = 942

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 697 VLVIDDNADIRSYVRGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 755

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 756 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 811


>gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRVREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|317479492|ref|ZP_07938623.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
 gi|316904312|gb|EFV26135.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
          Length = 1347

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K++IVEDN+   +  R  +    Y      NG EAL + +++ P+++I DI + E+ G 
Sbjct: 1084 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIVKEYMPNLVISDIMMPEMRGD 1142

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   +K D E   IP+I +TA     +     + G + YI KP ++ I    I   +  
Sbjct: 1143 ELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLTN 1202

Query: 122  EA 123
             A
Sbjct: 1203 RA 1204


>gi|270293538|ref|ZP_06199740.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275005|gb|EFA20865.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1347

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K++IVEDN+   +  R  +    Y      NG EAL + +++ P+++I DI + E+ G 
Sbjct: 1084 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIVKEYMPNLVISDIMMPEMRGD 1142

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   +K D E   IP+I +TA     +     + G + YI KP ++ I    I   +  
Sbjct: 1143 ELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLTN 1202

Query: 122  EA 123
             A
Sbjct: 1203 RA 1204


>gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  ALE   +   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRSEGHT--VPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 244

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K+++V+D++  ++L    +   GY  +   NG +AL       PD  ++I+D+ + E+ G
Sbjct: 17  KILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNT-TPDIGLVILDLMMPEMDG 75

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K+I++DS    IP++ ++A     D+ +    G + Y++KP +    M  ++  + 
Sbjct: 76  MEVIKRIRKDS---SIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLR 132

Query: 122 EA 123
            +
Sbjct: 133 RS 134


>gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1465

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1207 TLLLVEDNKDLCQLIKLQLEDM-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1265

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + + E
Sbjct: 1266 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1324


>gi|255654521|ref|ZP_05399930.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-23m63]
 gi|296449247|ref|ZP_06891033.1| response regulator [Clostridium difficile NAP08]
 gi|296880778|ref|ZP_06904727.1| response regulator [Clostridium difficile NAP07]
 gi|296261916|gb|EFH08725.1| response regulator [Clostridium difficile NAP08]
 gi|296428225|gb|EFH14123.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D    + L  D ++  G+  L   +G   +E   +++PD+II+DI + ++ G
Sbjct: 1   MSKILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIE-LSKNEPDLIILDIMMPKMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I++D      P+I ++A   + D+ +    G + Y++KP  L   M  I+  + 
Sbjct: 60  FEVCQAIRDDVL---CPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|212696240|ref|ZP_03304368.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676869|gb|EEB36476.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I +D +   +  +  +E +G+  ++   G EAL++A + KP V I+DI L  IS
Sbjct: 1   MSNKILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+   I++  +  ++ +I V+A +   D+    + GC+ YI KP +    +  ++  +
Sbjct: 61  GYEVCDTIRK--KYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D     +    ++   GY      +G +  ELA Q+  D++I+D  L    GL 
Sbjct: 2   KILLVDDEAELTEPLYHILSHEGYEVDVADDGQKGYELALQNTYDLLILDWMLPRKPGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++  S+ +  PV+ +TA     D       G + Y+ KP  L   M  ++  +  +
Sbjct: 62  ICQELR--SQGKNAPVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALLRRS 119


>gi|160888763|ref|ZP_02069766.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492]
 gi|156861662|gb|EDO55093.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492]
          Length = 1390

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K++IVEDN+   +  R  +    Y      NG EAL + +++ P+++I DI + E+ G 
Sbjct: 1127 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIVKEYMPNLVISDIMMPEMRGD 1185

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   +K D E   IP+I +TA     +     + G + YI KP ++ I    I   +  
Sbjct: 1186 ELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLTN 1245

Query: 122  EA 123
             A
Sbjct: 1246 RA 1247


>gi|119487928|ref|ZP_01621425.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119455504|gb|EAW36642.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 363

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 64/119 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++IV+D   N  +    +    Y      +G++AL+     KPDVI++D+ + E+ G+
Sbjct: 4   AKILIVDDEPNNFDVIEAQLLEEPYELSYASSGIKALQRLPLFKPDVILLDVMMPEMDGV 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++ ++IK D +   IP++AVTA   K +  R  +GG + +ISKP S       I+  + 
Sbjct: 64  KVCQKIKSDPQWSHIPIVAVTALNSKQEMARCLEGGADDFISKPASSIELRARIRSMLR 122


>gi|91786119|ref|YP_547071.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695344|gb|ABE42173.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 240

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++ED+     +  + +  SGY      +G   L   +   PD++I+D+ L ++ 
Sbjct: 1   MTQQLLMIEDDSRLAAMVGEYLRQSGYGFTHAADGASGLAALQASPPDLVILDLMLPDMD 60

Query: 61  GLEITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           GLE+ ++IK   SE     V+ +TA     D     + G + Y+ KP      +  I+  
Sbjct: 61  GLEVCRRIKSQGSESAHTAVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|78046443|ref|YP_362618.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|166710712|ref|ZP_02241919.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188575358|ref|YP_001912287.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|194364430|ref|YP_002027040.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|289663571|ref|ZP_06485152.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670959|ref|ZP_06492034.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325917339|ref|ZP_08179557.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325926570|ref|ZP_08187886.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78034873|emb|CAJ22518.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|188519810|gb|ACD57755.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|194347234|gb|ACF50357.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|325536473|gb|EGD08251.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325543078|gb|EGD14525.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 237

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN    ++  + +E  G+     ++G++   LA ++  DV+++D+ L  + G+E+
Sbjct: 11  VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 71  CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 127


>gi|303325918|ref|ZP_07356361.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302863834|gb|EFL86765.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 954

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 71/117 (60%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DNE+N ++ ++L+E +G       NG EA+E  R+    +++MD+Q+  + GLE 
Sbjct: 600 VLVVDDNEINRQIAKELLEQAGLAVTVVGNGREAVEYVRRQPVSLVLMDVQMPVMDGLEA 659

Query: 65  TKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T +I+E      E+P++A+TA A KG     +  G   Y++KP++ +     +++++
Sbjct: 660 TCRIRELGRSPEELPILAMTAHADKGSRMDGKSVGMNDYLTKPVNPAELYAALEEWL 716


>gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
 gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
          Length = 242

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRVREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + Y+ KP         I+  +  +
Sbjct: 67  VIQKIR--DEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRS 124


>gi|222107067|ref|YP_002547858.1| two component response regulator [Agrobacterium vitis S4]
 gi|221738246|gb|ACM39142.1| two component response regulator [Agrobacterium vitis S4]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++++D+     L  + +   G+  L T +G + L        D+I++D+ +  ++G
Sbjct: 1   MTRVLLIDDDLEFTGLLCEYLTDEGFDVLSTDDGAKGLAFVDSGATDIIVLDVMMPIMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ + I++ SE   IP++ +TA     D       G + Y+SKP S    +  ++  + 
Sbjct: 61  VDVLQNIRKSSE---IPIVMLTARGDDKDRITGLDLGADDYVSKPCSPGELVARLRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
 gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  ++I+ED +    +  +L+  +GY      +G+E L    +    +I++DI + +I 
Sbjct: 1   MIDNILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQYFSLILLDIMMPKID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I+++S   +IP+I +TA   +  + +  +   + YI+KP SL + +  I+  +
Sbjct: 61  GYAVCEIIRKNS---DIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|16118480|gb|AAL14442.1|AF370885_4 AdeR response regulator [Acinetobacter baumannii]
          Length = 228

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129


>gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D +  + L   L+   GY   +  +G E+LE+   +K D+ I+D+ L +ISG
Sbjct: 1   MAKILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIENNKIDLAILDVMLPDISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + I+E       PV+ +TA     D+      G + YI KP +    +  +K  + 
Sbjct: 61  FDVLQSIREKQFF---PVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515]
          Length = 223

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     +    L++   Y      NG EAL+     + DVII+D+ + ++ G  
Sbjct: 2   KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             K ++  ++  ++ ++ +TA     D       G + Y+ KP      M  I+  +  A
Sbjct: 62  FLKLLR--NKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRA 119


>gi|332526668|ref|ZP_08402770.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
 gi|332111071|gb|EGJ11103.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
          Length = 598

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N  +  +++++ G   ++  +G +ALE   +   D+++MDIQ+  + G E
Sbjct: 479 RVLLVEDNPVNRLIAAEMLKSCGLDVVEAEDGQQALETIDREHFDLVLMDIQMPVLDGYE 538

Query: 64  ITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+E      L  +P++A+TA A   D       G +A++SKP +       +K+++
Sbjct: 539 ATQRIREREARLRLARVPIVALTANAFDEDAALSLAAGMDAHLSKPYTREQLRALLKQWL 598


>gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED+E    L  + ++   Y  +Q  +G +ALE    +   +II+D+ L  I G+E
Sbjct: 5   KILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKY-DNTFQLIILDLMLPYIDGIE 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E+S    +PVI ++A   + D       G + Y+ KP S       +K  +  
Sbjct: 64  VLRKIRENS---TVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRR 119


>gi|296155941|ref|ZP_06838780.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295893447|gb|EFG73226.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1188

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + +++ ED+  N+     ++E  G      RNG EALE         +I+MDI + E+ G
Sbjct: 1067 RTILLAEDDVRNIFALSHVLEPLGAKLQIARNGREALEALENGPEVHLILMDIMMPEMDG 1126

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            L    +I+ +     +P+IA+TA AM  D  R  + G + Y+SKPI +   +   + ++ 
Sbjct: 1127 LTAMGEIRRNPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLR 1186

Query: 122  E 122
            +
Sbjct: 1187 Q 1187



 Score = 91.3 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    ++ RDL     +  +   +    L L R  +P  +++D+ L + SGL +
Sbjct: 801 IVAVEDDLAFAEILRDLTHELDFDFVHASDAASGLALVRDMRPAAVLLDVGLPDRSGLTV 860

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            + +K D   + IP+  V+A       ++    G   Y  KP +       I++ 
Sbjct: 861 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARGTMEAAIRRL 912



 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 46/94 (48%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V+++ED+    +  R L+++     +      EAL    +   D ++ D+ L + +G 
Sbjct: 921  KRVLVIEDDAPMRESIRALLQSENTEIVAVATLAEALAYLAKVTFDCVVTDLALPDGTGY 980

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            ++ +++  ++    +PVI  T   +  DEE   +
Sbjct: 981  DLLERLATNTVHVSLPVIVYTGRMLSDDEEHRLR 1014


>gi|307154499|ref|YP_003889883.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 7822]
 gi|306984727|gb|ADN16608.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 7822]
          Length = 315

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+     L +  +E  GY  +  ++G E L    + +PD++++D  + E+ G   
Sbjct: 15  ILVVDDDRSTRTLLKVAMEEEGYRVVTAKDGEECLNEYNRCQPDMVLLDAVMPEMDGFSC 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K++ E S+   IP++ +TA   +   ++    G   YI+KPI  ++  + +K+ +
Sbjct: 75  CKRLTEISQGHNIPILMITALDDQDSIDQAFACGAVDYITKPIHWAVLAQRVKRLL 130


>gi|153869802|ref|ZP_01999327.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073730|gb|EDN70671.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 151

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++I +D+ +N+K     +     +  L   NG   L++A Q  PD+I++D+ +  I G 
Sbjct: 7   TILIADDSLINIKFLLYYLTNKVEFRVLVANNGKSVLQIASQANPDLILLDVMMPGIDGF 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++ +Q+K +   ++IP+I +TA     D+ +  + G   YI+KP+     +  +   +
Sbjct: 67  QVCEQLKSEEHTRDIPIIFMTALDKTEDKIKAFRLGAADYITKPLQPEELLARVTTQL 124


>gi|26987013|ref|NP_742438.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24981631|gb|AAN65902.1|AE016218_4 DNA-binding response regulator GltR [Pseudomonas putida KT2440]
          Length = 239

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D++   +L  D +  +GY  L   +G +  +   +HK +++++D+ L    
Sbjct: 1   MSTTLLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +Q++    L    VI ++A     D     + G + Y++KP      +  IK  +
Sbjct: 61  GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|253571901|ref|ZP_04849306.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
 gi|251838498|gb|EES66584.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
          Length = 885

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++DNE        L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 640 VLIIDDNEDIRSYVHTLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 698

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 699 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 754


>gi|237716456|ref|ZP_04546937.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1464

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1264

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +  + +    G  AYI+KP S    +  I + + E
Sbjct: 1265 MLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323


>gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 1096

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ V+D  +N+++ ++++   GY     RNG EAL    Q +PD+I++D+ +  +SGL++
Sbjct: 702 ILAVDDEPINLQVLQNVLLPQGYRITTARNGSEALRSVAQERPDLIVLDVMMAGLSGLDV 761

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++    L E+P+I +TA     D     + G   Y+ KP      +  I+  +
Sbjct: 762 ARDLRRRHGLHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLL 817


>gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +K  V+I+ED +   K     ++   Y  + T +G+  L   R+  PD++++D+ L  
Sbjct: 1   MDRKPLVLIIEDEKEIAKFIDLELQAESYETVVTYDGVTGLSKFRELNPDLVVLDLMLPV 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ +++++       P+I +TA     D+      G + Y+ KP S+   +  ++ 
Sbjct: 61  LDGLEVARRVRK---TSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRA 117

Query: 119 YIGE 122
           ++  
Sbjct: 118 HLRR 121


>gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G EAL++  +   D+ ++D+ L  I G
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++E     +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 64  LEVCKAIRKENEKMG--IIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G EAL++  +   D+ ++D+ L  I G
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++  +++ +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 61  LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 242

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            ++++VED +    +  D +  +GY      +G  AL+       PD+ ++D+ L  I G
Sbjct: 5   ARILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q +  ++    P++ +TA   + D     + G + YI KP S    +  +K  + 
Sbjct: 65  LEVLRQARRHTDN---PIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1572

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 71/118 (60%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             K+++ EDN+LN +L  +L+ ++G   +   NG E L+   Q + D ++MD Q+  + G 
Sbjct: 1232 AKLLVAEDNDLNQELIVELLSSNGITPVLANNGQEVLDFLEQEQFDGVLMDCQMPIMDGY 1291

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T++I+++ + + +PV+A+T  AM GD ER  + G   +I KPI++     TI K++
Sbjct: 1292 TATRRIRDNEQFEHLPVLAMTENAMAGDRERALESGMNDHIPKPINVDELFTTIAKWV 1349



 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEIS 60
            +V++VEDN  + ++   ++ +         +G+EA+ + +        + ++D ++ ++ 
Sbjct: 1086 RVLLVEDNANSREILLAMLASLNVQVECAEDGVEAVAMLKASEASPYQLALLDWKMPKLD 1145

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            G+ + K IK+  E     V+ VTA+  +           +A ++KP++ S   + +
Sbjct: 1146 GIGVAKFIKQLPESITPHVVMVTAYGKEELLLDAVDVPIDAVLTKPVTQSTLWDAL 1201


>gi|254472023|ref|ZP_05085424.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
 gi|211959225|gb|EEA94424.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
          Length = 242

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              ++IV+D+    +     +  +        +   A ++ +    D++++DI +    G
Sbjct: 5   TAHILIVDDHRDIRESLARYLTKNNMRTTVAESAAAARKVLKNSSIDLVVLDIMMPGEDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + +    E  + PVI +TA A   D     + G + Y++KP +    +  I+  + 
Sbjct: 65  LSLCRHL---VETNQAPVILLTAMAEDTDRVVGLEIGADDYVTKPFNPRELLARIRAVLR 121

Query: 122 EA 123
            A
Sbjct: 122 RA 123


>gi|217975276|ref|YP_002360027.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217500411|gb|ACK48604.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1629

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
             +++VEDN+LN ++  +L+   G   +    GME + L  +     D++IMD+Q+ ++ G
Sbjct: 1287 TILVVEDNQLNRQVIDELLSYEGANVVLAEGGMEGVSLVLESGDLFDIVIMDMQMPDMDG 1346

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            LE T++I+ D     +P++A+TA A + D +     G   ++ KPI + + + +I + +G
Sbjct: 1347 LEATRRIRADGRFAALPILAMTANASQSDRQECLNAGMNDHVGKPIDMPLLLPSILRLVG 1406

Query: 122  E 122
             
Sbjct: 1407 R 1407



 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
            +V++V+DNEL +++   ++   G        G  AL   +Q        DV++MD ++ +
Sbjct: 1142 RVLVVDDNELTVEILEKILTGFGCEVETALGGYSALAKVKQSHEKSTPFDVVLMDWRMPD 1201

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMK--GDEERIRKGGCEAYISKPISLSIFMET 115
            + GL+  + ++      + P V+ +TA+  +   + ++IR      +++KP++  I  E 
Sbjct: 1202 LDGLQTAEMLRNSDANNQTPLVVMLTAYGHEVIAESQQIRHVPFVNFLTKPVTSQILAEA 1261

Query: 116  IKKYI 120
            +   I
Sbjct: 1262 VLNAI 1266


>gi|160877439|ref|YP_001556755.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160862961|gb|ABX51495.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315269641|gb|ADT96494.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1629

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
             +++VEDN+LN ++  +L+   G   +    GME + L  +     D++IMD+Q+ ++ G
Sbjct: 1287 TILVVEDNQLNRQVIDELLSYEGANVVLAEGGMEGVSLVLESGDLFDIVIMDMQMPDMDG 1346

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            LE T++I+ D     +P++A+TA A + D +     G   ++ KPI + + + +I + +G
Sbjct: 1347 LEATRRIRADERFAALPILAMTANASQSDRQECLNAGMNDHVGKPIDMPLLLPSILRLVG 1406

Query: 122  E 122
             
Sbjct: 1407 R 1407



 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
            +V++V+DNEL  ++   ++   G        G  AL   +Q        DV++MD ++ +
Sbjct: 1142 RVLVVDDNELTTEILEKILTGFGCEVETALGGYAALAKVKQSHEKSTPFDVVLMDWRMPD 1201

Query: 59   ISGLEITKQIKEDSELQEIP-VIAVTAFAMK--GDEERIRKGGCEAYISKPISLSIFMET 115
            + GL+  + ++      + P V+ +TA+  +   + ++IR      +++KP++  I  E 
Sbjct: 1202 LDGLQTAEMLRNSDANNQTPLVVMLTAYGHEVIAESQQIRHVPFVNFLTKPVTSQILAEA 1261

Query: 116  IKKYI 120
            +   I
Sbjct: 1262 VLNAI 1266


>gi|150017636|ref|YP_001309890.1| response regulator receiver protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149904101|gb|ABR34934.1| response regulator receiver protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 156

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED ++  ++  D +   GY  L+  +G +ALEL + +  +++I+DI L +I G
Sbjct: 1   MNKILVVEDEDILREVIVDYLIEDGYQVLEAADGEKALELFQSNSVELVILDIVLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++I+++S    IP+I +TA + + D     + G + Y+ KP S  I M  +K+++
Sbjct: 61  WSVCRRIRKNS---SIPIIMLTARSDEDDSLMGYELGADDYLIKPYSPRILMVKVKRFL 116


>gi|332974230|gb|EGK11163.1| DNA-binding response regulator [Kingella kingae ATCC 23330]
          Length = 231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++VED      L    ++ +G+      +   A EL  Q + D++++D  L + 
Sbjct: 1   MNKTRILVVEDEMPIQTLIAFSLQQAGFDVQCASHVQAARELIAQQRHDLLLLDWMLPDG 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+    +++       +P+I +TA +   D+E     G + Y++KP S    +  I   
Sbjct: 61  DGVSWIAELRAQPATAALPIILLTARSEDADKEHGFAQGADDYLTKPFSPRELIARIHAR 120

Query: 120 IG 121
           + 
Sbjct: 121 LR 122


>gi|329913505|ref|ZP_08275963.1| twitching motility protein PilH [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545323|gb|EGF30563.1| twitching motility protein PilH [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 121

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 57/116 (49%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+        D++  +G+      NG EAL   +  KP +I+MD+ +   +G +
Sbjct: 5   KILIVDDSPTERYFLTDVLVKNGFSVATAENGEEALLKIKADKPQLILMDVVMPGQNGFQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +T+ I  D E Q++P+I  T+   + D     + G   YI KP+     +  I   
Sbjct: 65  VTRAISRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKPVDPQELLAKIAAL 120


>gi|255526636|ref|ZP_05393542.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186096|ref|ZP_06854501.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509669|gb|EET86003.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049364|gb|EFG88793.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED++   +L + ++  +GY      NG  ALE+  Q   D+I++D+ + E++G
Sbjct: 1   MFKILVVEDDKSQARLMKAILSHAGYEIHLAHNGTIALEILDQVHIDLIVLDVMMPEMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+ I++   +  IP++ +TA  +  D+ R  + G + Y++KP      +  IK  + 
Sbjct: 61  YEFTETIRKSGNM--IPILMLTAKQLTTDKIRGFQSGTDDYMTKPADEEELLWRIKALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           + +IVED    +   R ++E  GY      +G   L  A   + DVI++D  L  +SG +
Sbjct: 2   RALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGFD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + KQ++     +  PV+ +TA     D  +    G + Y+ KP      +  ++  I  A
Sbjct: 62  LLKQLRTK---KSTPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRA 118


>gi|225026937|ref|ZP_03716129.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
 gi|224955748|gb|EEG36957.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
          Length = 248

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I++D +    L    ++   Y+  +     +A+        D+ I+DI L +++
Sbjct: 18  MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I++       P+I +TA   + D+      G + Y++KP      +  +K  +
Sbjct: 78  GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 134

Query: 121 GE 122
             
Sbjct: 135 RR 136


>gi|150003719|ref|YP_001298463.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149932143|gb|ABR38841.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1327

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++DN   + + +++     Y      +G +A +    H+ D+II D+ L +I+G E
Sbjct: 1077 TLLLIDDNAELLYIMKEMF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1135

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  +IK D     IPVI +TA     D       G + YI+KP  + +    +   I 
Sbjct: 1136 LCTRIKSDLRFNHIPVIILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1193


>gi|126738480|ref|ZP_01754185.1| response regulator [Roseobacter sp. SK209-2-6]
 gi|126720279|gb|EBA16985.1| response regulator [Roseobacter sp. SK209-2-6]
          Length = 423

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+ L  ++    ++  G+  ++  +G  A+E+  Q  PD+I+ D  +  +SG+E
Sbjct: 20  RVLVVDDSRLQRRILVASLKKWGFEVIEADSGEAAMEICLQESPDLILSDWMMPGMSGIE 79

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKYI 120
             +  ++ S+      I +T+ + K +       G + +++KP+S       I   ++ +
Sbjct: 80  FCQAFRQRSKDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERIL 139

Query: 121 G 121
            
Sbjct: 140 R 140


>gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+MIVED+    ++    ++   Y  +   NG +AL L      D++++D+ +  +SG
Sbjct: 1   MSKIMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMIPCLSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++ +        PVI +TA     D+      G   YI+KP ++   +  I+  + 
Sbjct: 61  LEVLRRYR--MRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALR 118


>gi|317490823|ref|ZP_07949259.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920370|gb|EFV41693.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 233

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   + +VED           +E+ G+       G+  LE+  + KPD++I+D+ L +I+
Sbjct: 1   MSPTIWLVEDESSIADTLIYTLESEGFTVCWFERGLPVLEMMTEKKPDLVILDVGLPDIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I   ++  ++PV+ +TA   + D     + G + Y++KP S       ++  +
Sbjct: 61  GFELCRKI--LTQSPDLPVLFLTARNDEVDRLIGLEIGADDYVAKPFSPREVCARVRTIL 118

Query: 121 GEA 123
             +
Sbjct: 119 RRS 121


>gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED        +  +E +GY+    R+G+E   LA + +  ++++D+ L  I G  
Sbjct: 2   RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGEYALVLLDVMLPGIDGFT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+     + +PV+ +TA     D  +  + G + Y+ KP S S  +  ++  +  
Sbjct: 62  VLQAIR---RTKNVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRR 117


>gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
          Length = 228

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL  D +  + Y  ++  NG EAL++  + K   +II+D+ + ++ G 
Sbjct: 9   KILVVDDESRMRKLVHDFLARNNYDVIEAANGEEALDIFYEDKDIALIILDVMMPKMDGW 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+  +I+ +S+   +P+I +TA   + DE +  + G + YISKP S  I    +   I  
Sbjct: 69  EVCAEIRRNSK---VPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAIIRR 125


>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1149

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 68/115 (59%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N K+ + L +  GY     +NG+EA+ +  +++ +++ MDIQ+ E+ GLE
Sbjct: 1016 RILLAEDNVINQKVAKRLFKKMGYEISVAQNGLEAVAMIGENEFELVFMDIQMPEMDGLE 1075

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T++I +    +   +IA+TA AM+ D E     G + Y++KP  L    + I K
Sbjct: 1076 ATREIIKRWPSERPRIIALTANAMREDRENCFAAGMDGYLTKPFKLDDLKDVIAK 1130


>gi|148977298|ref|ZP_01813912.1| probable transcriptional regulator SyrB [Vibrionales bacterium
           SWAT-3]
 gi|145963411|gb|EDK28675.1| probable transcriptional regulator SyrB [Vibrionales bacterium
           SWAT-3]
          Length = 222

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V++V+D+    +L  +++E  GY       G  ALE  + +  D++++D+ L  +S
Sbjct: 1   MMSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGEAALEFIQSNPVDLVLLDVMLPNLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ ++I +       P++ +TA           + G + YI+KP ++   +  IK  +
Sbjct: 61  GIQVARRICQRFAT---PILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|325298170|ref|YP_004258087.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
 gi|324317723|gb|ADY35614.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED E    + +D +E  G+      NG E +E     KPDV++ D+ +  + G E+
Sbjct: 10  VLLVEDEETLALIIKDTLEGQGFAIRLAENGEEGIEKFFGQKPDVVVADVMMPRMDGFEM 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+     ++ PV+ +TA +   D     + G   Y+ KP  +   +  IK  +G A
Sbjct: 70  VRRIRRKD--KQTPVLFLTARSATSDVVEGFELGGNDYLKKPFGMQELIVRIKALLGRA 126


>gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
 gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L    +   G+  ++  +G EAL +      D++++DI +  + G
Sbjct: 1   MPTILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAPIDLVVLDIMMPTMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K++++ +   ++P++ +TA     ++ +  + G + Y++KP         +K  + 
Sbjct: 61  WTLCKELRKMNT--DLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|298241004|ref|ZP_06964811.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554058|gb|EFH87922.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED     +     +  +GY  ++  +G  A+EL  +HKPD+ I+D+ L ++SGL++
Sbjct: 3   VLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFEEHKPDLAIIDLNLPKMSGLDV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K I+       +P++ VTA     DE +    G + YI KP + ++ +  ++  +
Sbjct: 63  CKAIR---TTSTMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL 115


>gi|294055631|ref|YP_003549289.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614964|gb|ADE55119.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 233

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 65/119 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +L +  +E  GY      + +  +  AR ++PD++I+DI + E++GL+
Sbjct: 8   RILVVDDEPDVTELLKYKLEQEGYQCEVLNDPLAFVGRARDYQPDLMILDIMMPELNGLQ 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  + D  ++++P++ +TA     D  +  + G + Y+SKP +    M  + K +  
Sbjct: 68  LCRIARSDPAIKDVPIVFLTARGEAEDRIKGLEIGADDYVSKPFNTKELMLRVGKVLNR 126


>gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I ED           +  SG+      +G + L+ A     D++I+D+ L +  G
Sbjct: 1   MSRILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGLPDRDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I K+++   E   +P+I +TA     D+    + G + Y++KP   +  +  ++  + 
Sbjct: 61  FQILKELRGQGET--LPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLR 118


>gi|254881051|ref|ZP_05253761.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254833844|gb|EET14153.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1327

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++DN   + + +++     Y      +G +A +    H+ D+II D+ L +I+G E
Sbjct: 1077 TLLLIDDNAELLYIMKEMF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1135

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  +IK D     IPVI +TA     D       G + YI+KP  + +    +   I 
Sbjct: 1136 LCTRIKSDLRFNHIPVIILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1193


>gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 1   MLMRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|256821208|ref|YP_003142407.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256799188|gb|ACV29842.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED+E  + L    +E   YI  +  +  +AL+  ++ + D+ I+DI L   +
Sbjct: 1   MNYSVLVVEDDESILDLIEIYLENENYIIKRATSSEQALKYIKEKEFDLAILDIMLPGEN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I  +I+E       P+I +TA   +  + +    G + Y++KP      +  +K  +
Sbjct: 61  GYYICAKIRESYNY---PIIMLTAKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|297196322|ref|ZP_06913720.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197722900|gb|EDY66808.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1150

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
            + V++V+D+  N+    +L+E  G   +   NG   +EL R +H   +++MD+ +    G
Sbjct: 1028 RTVLVVDDDTRNVFALTELLEHEGVHVITADNGRTGIELVRTRHDIGLVVMDVMMAGTDG 1087

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
                + I++     ++P+I VTA AM GD       G + Y+SKP+     +  I+ ++ 
Sbjct: 1088 YSAMQAIRKLPHAADVPIIVVTAKAMAGDRAEALAAGADDYVSKPVDTDRLVAKIRLWLE 1147

Query: 122  E 122
            +
Sbjct: 1148 Q 1148


>gi|196045036|ref|ZP_03112269.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863840|ref|YP_002749218.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196024038|gb|EDX62712.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786425|gb|ACO26642.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+  L   NG EAL++   +   + I+DI +  + G+E+
Sbjct: 6   ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     +   GY  ++  NG   LE+A + + D+II+D+ L EI+G
Sbjct: 1   MVKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++I++   + E+P+I +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRIRK---VSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|332828824|gb|EGK01516.1| hypothetical protein HMPREF9455_02349 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1442

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++I++DN+       D      ++     +G + L+ A +  PD+II D+ +  + G E
Sbjct: 1191 KMLIIDDNDDIRNFLIDEFSKY-FMVEVAEDGQKGLQKAIEINPDLIICDVMMPAMDGFE 1249

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T+++KED +   IP+I +TA +    +    + G +AYI KP SL   +  + K I +
Sbjct: 1250 VTRRLKEDFQTCHIPIILLTAHSSIEHQLEGIQSGADAYIMKPFSLKYLVTRVFKLIEQ 1308


>gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     ++  D +   G++     +G EA    +Q  PD +I+D+ L    GL I
Sbjct: 7   VLVVEDEPKIAQILVDFLSLEGFLTHVVHDGDEAEAAIKQVNPDCVILDLMLPGKDGLSI 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K +++      +P+I +TA   + D       G + Y+ KP S    +  ++  +  A
Sbjct: 67  CKDVRK---FSHVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLRRA 122


>gi|325280518|ref|YP_004253060.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
 gi|324312327|gb|ADY32880.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++VED+     + +  +E S Y      NG + LE  R+ K D+ ++D+ + E+ 
Sbjct: 1   MAQKILLVEDDPCFGSVLKSYLELSDYEVTLCVNGNDGLEAFRKDKFDICLLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+E      +P + +TA +MK D ++  + G + YI KP    + +  IK  +
Sbjct: 61  GFTLGKKIREIDG--NVPFVYITAKSMKEDMKQGYEIGADDYIVKPFDSEVLILKIKAIL 118

Query: 121 GEA 123
             +
Sbjct: 119 SRS 121


>gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  ALE   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRAEGL--PVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|258516894|ref|YP_003193116.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM
            771]
 gi|257780599|gb|ACV64493.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM
            771]
          Length = 1155

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KK+++++D+  N+    +++E  G   L  +NG E + L   +   D+I+MDI + E+ G
Sbjct: 1035 KKILLIDDDMRNVFALMNVLEEKGMKVLVGKNGKEGIFLLEDNPDVDLILMDIMMPEMDG 1094

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  K+I++ ++ +  P+IA+TA AM GD  +  + G   Y+SKPI     +  ++ ++
Sbjct: 1095 YEAMKEIRKQNKFKLTPIIALTAKAMVGDRSKCIEAGASDYLSKPIDTDKLLSLLRVWL 1153



 Score =  110 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I+ED+     +  DL    G+      +G   L+ A +++P  II+D+ L +I G  +
Sbjct: 769 VLIIEDDPRFSAILVDLAGGKGFHVYTAADGETGLQFALKYRPSAIILDVGLPDIDGWAV 828

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
            +++K + E + IPV  ++A+    D     + G   Y++KP+S+ + 
Sbjct: 829 MERLKGNPETRHIPVHFISAYDSGLD---AMRMGAIGYLTKPVSMEVL 873



 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VED+EL  +   +LI     +     +G EA EL R    D I++D+ L+++SG 
Sbjct: 889  KKLLVVEDDELQQRSILELIGEGDVMTTAVGSGYEAFELLRTGNFDCIVLDLGLRDMSGF 948

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            ++ ++I+    +  IPVI  T   +  +EE I     E+ I K + S    ++
Sbjct: 949  DLLEKIRNHDAISHIPVIIYTGKDLTKEEEAILSEHAESIIIKGVKSPERLLD 1001


>gi|197337852|ref|YP_002157772.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11]
 gi|197315104|gb|ACH64553.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11]
          Length = 221

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D+     L +++++  GY       G  ALE  + H  D++++D+ L ++ G
Sbjct: 1   MSRILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHSIDLVLLDVMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I +       P++ +TA   +       + G + +I+KP ++   +  I   + 
Sbjct: 61  YQVARRICQRFAT---PILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED+    +     +   GY      NGM+ L++AR   PD++I+D  L  IS
Sbjct: 1   MNDHILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWMLPVIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++  ++++     E P+I +TA     D       G + Y++KP S+   +  +K  +
Sbjct: 61  GLDLCLRLRKTGM--EAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|158337064|ref|YP_001518239.1| two-component response regulator [Acaryochloris marina MBIC11017]
 gi|158307305|gb|ABW28922.1| two-component response regulator [Acaryochloris marina MBIC11017]
          Length = 363

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 61/119 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+++ED +    +  +++    +  ++  +G   + LA++  PD++I DI + E  G
Sbjct: 1   MSKVLVIEDQDDIRSIVCEILIAESFNVIEAEDGHIGVLLAQEEMPDLVICDIMMPEFDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +  Q++++  LQ +P I +TA A K D     + G   Y++KP +    +  +   I
Sbjct: 61  YSVMTQLRQNPYLQSVPFIFLTAKASKTDLRLGMELGANDYLTKPFTRDELLGAVNAQI 119


>gi|326776200|ref|ZP_08235465.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
 gi|326656533|gb|EGE41379.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1821

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G 
Sbjct: 1701 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1760

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  +++++
Sbjct: 1761 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1818


>gi|326404574|ref|YP_004284656.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
 gi|325051436|dbj|BAJ81774.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
          Length = 239

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D+    +L    +E   +     R+  EA          ++++D+ L   SG
Sbjct: 4   MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  + ++ +S+   +P+I +TA   + D     + G + Y++KP +    +  I+  + 
Sbjct: 64  IDFARWLRGESQ---VPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K++I +D      L +  +E  GY   +  +G EAL++       + ++D+ + E+ 
Sbjct: 1   MMDKILIADDETEIRSLLKLYLENEGYAVAEAGDGQEALKILAGGDISLCLLDVMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K++++++    IPVI ++A     D+      G + Y+ KP +    +  ++  +
Sbjct: 61  GFHVLKEMRKNN---NIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 234

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+ VED+++  +  +  +E  G++     +G+  LE  R  +PD+ ++D+ +  + G+ 
Sbjct: 5   HVLFVEDDDVIREATQLALERDGFVVTAAPDGLTGLERFRADRPDIALLDVMVPGLDGVS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S    +PVI ++A A   D     + G + Y++KP   ++ +  I+  +  
Sbjct: 65  LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120


>gi|239787643|emb|CAX84111.1| Sensor protein [uncultured bacterium]
          Length = 1221

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEIS 60
           + +++ EDNE+N ++ + ++   G       +G+ AL          DV++MDI +  + 
Sbjct: 864 RHILLAEDNEINQEIAQAILSGEGAAVRIAADGVAALSAVESSDRPFDVVLMDIHMPVMD 923

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E T +I+      ++P+IA+TA AM  + E+    G   +I+KPI +   + T+ +++
Sbjct: 924 GYEATSRIRAIPAHADLPIIAMTASAMVEEREKCLAVGMNDHIAKPIDVGQMLSTLDQWM 983

Query: 121 G 121
            
Sbjct: 984 R 984



 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEIS 60
           ++ +IV+D  L+  + RD++   G      ++G  AL          DV+++D  +  + 
Sbjct: 719 RRALIVDDLALSCDVLRDVMTNFGLSVTTVKSGQAALAELTTTASPFDVVLLDWHMPGMG 778

Query: 61  GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E+ + I+ + ++  +P V+ VT F  +   + +R    +  + KPI  S+ +E+I   
Sbjct: 779 GAELIRNIRGNPQVASVPLVLMVTPFGQEEALDGMRDLELDGLLVKPILPSVLLESILGA 838

Query: 120 IG 121
           +G
Sbjct: 839 LG 840


>gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D+       +D +E SGY  +  +NG EAL L   + P +++ DI++    G E+
Sbjct: 5   ILIADDDPGIRLAVKDYLELSGYSVVTAKNGQEALSLLETYHPHLLVSDIKMPRTDGYEL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+++  E + +PV+ +T  +   +  R  + GC+ Y+ KP  +      I+  +  +
Sbjct: 65  VAQVRQRPEFRLLPVVFLTEKSTTHERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERS 123


>gi|194014661|ref|ZP_03053278.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013687|gb|EDW23252.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQL 56
           M K   KV+I++D +  ++L   ++   G    +      + L    Q +PD++I+DI L
Sbjct: 1   MPKLQSKVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFNQEQPDLVILDIML 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +  G +I KQI+   ++  +P+I ++A   + D+      G + YI+KP S       +
Sbjct: 61  PDGEGYDICKQIR---DVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRV 117

Query: 117 KKYIGEA 123
           K  +  +
Sbjct: 118 KAQLRRS 124


>gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED           +   GY  ++  +G +ALEL R    DV+++D+ L  I G
Sbjct: 1   MTNILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELFRNRNFDVVLLDLMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I++ +  Q++ +I +TA   + D+      G + Y+ KP SL      I   + 
Sbjct: 61  FTVCQEIRKVN--QKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|315125334|ref|YP_004067337.1| two-component system sensor histidine kinase/response
            [Pseudoalteromonas sp. SM9913]
 gi|315013847|gb|ADT67185.1| two-component system sensor histidine kinase/response
            [Pseudoalteromonas sp. SM9913]
          Length = 1329

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK++IVEDNE   +L   L   + Y  L   NG E L L +   PD+++ D+ +  + G 
Sbjct: 1071 KKLLIVEDNEEMRELLVSLFSDN-YTCLTANNGEEGLVLCQTQMPDIVLSDVMMPTMDGY 1129

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   I+ D  +  IPV+ ++A A      +      + Y+ KP   S+    +   +G
Sbjct: 1130 QLLSAIRSDISINHIPVLLLSAKADSRSRIKGLDLLADDYLCKPFEASLLKSRVHGLLG 1188


>gi|306826251|ref|ZP_07459585.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431527|gb|EFM34509.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 224

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED     ++    +E  GY      NG +A+E A+ +   ++I DI +   +G+E
Sbjct: 2   KILLAEDETQLNRVITVALEREGYSVDSVFNGQDAVEKAKSNHYHLMIFDIMMPIKTGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K+I++        VI +TA A   D       G + Y++KP SL   +  ++     
Sbjct: 62  ALKEIRQAGNTTH--VIMLTAMAEVNDRVTGLDAGADDYLTKPFSLKELLARLRSTARR 118


>gi|119490861|ref|ZP_01623144.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106]
 gi|119453679|gb|EAW34838.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106]
          Length = 1161

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 67/116 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+DN    +   ++++ + +  +  RNG E  E A+ ++P+VII D+ +  +SGL+
Sbjct: 805 TILVVDDNPDLRRYLSNILKPAKFHVVMARNGAEGFEQAKTYRPEVIITDLMMPVVSGLD 864

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + + I+ED +L+  P+I +TA A +       + G +AY+SKP +    +  ++  
Sbjct: 865 LIRMIREDVQLRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELLAEVRNL 920



 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62
           K+++V+D   N+ L       + Y  L+  +  +ALE LA++    VII D ++ ++SG 
Sbjct: 10  KILVVDDEPDNLDLLYRTFYRA-YKVLRADSAPQALEILAQEEDVAVIISDQRMPQMSGT 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKKYI 120
           E+       ++  +   I +T +    D       G    Y++KP         + + +
Sbjct: 69  ELLSV--AATQYPDAIRILLTGYTDVEDLVEAINSGQVFKYVTKPWEAEELKVIVNQAL 125


>gi|120603308|ref|YP_967708.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563537|gb|ABM29281.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 559

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 3/124 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ ED+ +N+     L+   GY      +G E L   ++ + D+++MDI +  + G+
Sbjct: 423 ARILVAEDHPMNLMFIEKLLAKQGYEVHTVTDGTEVLPALQRERFDLVLMDIAMPVMDGI 482

Query: 63  EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T+ +++   +   + +P+IA+TA AMKGD E+    G + YI KPI+       + K+
Sbjct: 483 EATRSVRQAGNMITDKNVPIIAMTAHAMKGDREQFLAAGMDDYIGKPINSDNLCNMLLKH 542

Query: 120 IGEA 123
           +  A
Sbjct: 543 LQRA 546


>gi|320333135|ref|YP_004169846.1| response regulator receiver and SARP domain-containing protein
           [Deinococcus maricopensis DSM 21211]
 gi|319754424|gb|ADV66181.1| response regulator receiver and SARP domain protein [Deinococcus
           maricopensis DSM 21211]
          Length = 343

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 60/122 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+   +KL   ++  +G+      +  EAL+L     PD++I D+ +  ++G
Sbjct: 1   MPRVLVVDDDAAILKLVSVILTRAGHEVRTCAHPNEALDLLNVMTPDLVISDVVMPYMTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  + ++    + ++P + +++ A + D  R    G + Y+ KP +       +   + 
Sbjct: 61  YEFLEHVRAQPNMADLPFMLLSSHAERDDVRRGMNLGADDYLPKPFTPHDLTSAVDARLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 228

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED E   ++ +  +E  GY      NG E L  A + +  ++++D+ L  +SGLE
Sbjct: 5   HILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLPGLSGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++    Q+ PVI +TA     D+      G   Y++KP  +   +  I+  + +
Sbjct: 65  VLRRLRKTD--QQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQ 121


>gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 319

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IPVI +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|291618521|ref|YP_003521263.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291153551|gb|ADD78135.1| BaeR [Pantoea ananatis LMG 20103]
          Length = 279

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ ED+     +    I+ +G  A+    G  AL L +  +PD++++DIQL  I G  +
Sbjct: 54  ILVAEDDFEISDILMSYIKRAGMKAVHAAEGESALALIKTLQPDLVLLDIQLPLIDGWNV 113

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              ++++S     PVI VTA     D+    + G + YI KP + S  +  I+  +  A
Sbjct: 114 LSTLRKES---NTPVIMVTALDQDIDKLMGLRLGADDYIVKPFNPSEVVARIEAVLRRA 169


>gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 241

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
           K+++ +D++  ++L    +   GY +++  +G EAL   R     +++I+DI + E+ G+
Sbjct: 14  KILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPEMDGM 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+++++S+   IP+I +TA     D+ R    G + Y++KP +    M  +K  +  
Sbjct: 74  QVVKELRKESQ---IPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 130


>gi|261416190|ref|YP_003249873.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372646|gb|ACX75391.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327682|gb|ADL26883.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 794

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 78/120 (65%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD---VIIMDIQLQEIS 60
           KV++VEDNELN+++ +D++E++G +     +G  A+E  ++  PD    I+MDIQ+  + 
Sbjct: 673 KVLVVEDNELNLEISKDILESAGVVVESAEDGSIAVERLKEKGPDYYDCILMDIQMPVMD 732

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E T++I++    + IP+IA++A A   D  +  + G + +++KPI ++   +++KK++
Sbjct: 733 GFEATREIRKMFPDKRIPIIALSANAFDEDRRKSFEAGMDGHLAKPIVIAQLEDSLKKFL 792


>gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
 gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
          Length = 233

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
           +K+M+V+D     K+ RD +   GY  ++ ++G EAL+L  + H+  +II+D+ L ++SG
Sbjct: 11  QKIMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVMLPKLSG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++I+E     ++P++ +TA + + DE +    G + YISKP S    +  ++  + 
Sbjct: 71  FDVAREIRE---TSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILR 127

Query: 122 EA 123
            +
Sbjct: 128 RS 129


>gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L +  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 120


>gi|189463287|ref|ZP_03012072.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
 gi|189430017|gb|EDU99001.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
          Length = 246

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL      + +++++D+ + EISG +
Sbjct: 23  RILVVDDEEDLCEILKFNLEMEGYTVDTAYSAEEAL-KLDITQYNLLLLDVMMGEISGFK 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +K + +  EIP+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 82  MARMLKANKDTAEIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 140


>gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 245

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ +D+    +L +  + T  Y      NG+EALE   +   D+I +D+ +  + G 
Sbjct: 19  RRILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDGF 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++I+  S   ++P++ +TA     D  +  + G + YI+KP  ++ F+  ++  +  
Sbjct: 79  DACERIRAKS---DVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRR 135


>gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 224

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I GL+
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 235

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED      + R  +E  G++ +    G + L  A +   D I+++I L  ++G E
Sbjct: 2   RVLVVEDEARLANVVRRGLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIMLPGLNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I + ++        P++ +TA   + D+      G + Y+ KP S  + +  ++  +  A
Sbjct: 62  IVRALRAKQIW--TPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRA 119


>gi|86358026|ref|YP_469918.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86282128|gb|ABC91191.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 246

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L    ++ +G       +G +       +  D+I++DI +    GL 
Sbjct: 6   HILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFLEANAVDLIVLDIMMPGDDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     + IP++ +TA   + D     + G + Y++KP ++   +  IK  +  A
Sbjct: 66  LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLAKPFAVRELLARIKAVLRRA 124


>gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 277

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 43  KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 102

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 103 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 160


>gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 1193

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEISG 61
            ++++V+D   N+ +  +++E+ G       NG+ AL+      +  D+++MDIQ+ E+ G
Sbjct: 935  RILLVDDMPTNLLIAGEMLESFGITVDTADNGVLALKKVIDEGNDYDIVLMDIQMPEMDG 994

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            LE T++++     Q +P+IA+TA A   + +R    G   +++KPI   +  +T+ ++
Sbjct: 995  LEATRRLRAVERSQSLPIIAMTANAQDSERQRCLAAGMNDFLTKPIDPGLLQDTLFRW 1052



 Score = 91.3 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 18/129 (13%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQE 58
           +++ ++V+D+ L   +   L+E  GY A+   +G EAL L    R    + + +D  +  
Sbjct: 798 MRRALVVDDSPLARAILIRLLEKHGYSAIPAESGAEALGLLADTRTAPFEFVTIDFNMPG 857

Query: 59  ISGLEITKQIKEDSELQEIP-VIAVTAFAM----KGDEERIRKGGCEAYISKPISLSIFM 113
           + GLE+++ I+  +++   P ++ VTA         +         +A +SKP++     
Sbjct: 858 MDGLELSEAIR--NQISPCPRLVMVTASDTAALGSDERLHC----VDAVLSKPVTA---- 907

Query: 114 ETIKKYIGE 122
             I K + +
Sbjct: 908 AQIGKLVRD 916


>gi|330465155|ref|YP_004402898.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
            maris AB-18-032]
 gi|328808126|gb|AEB42298.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
            maris AB-18-032]
          Length = 1457

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
              V+IV+D+  N+      +E  G   L   NG + + L  +H   D+++MD  + +  G
Sbjct: 1330 ATVLIVDDDVRNVFALTSALELHGMTVLYADNGNDGVRLLAEHPEVDIVLMDAMMPDQDG 1389

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E T+QI+ +    ++P++ +TA AM GD E     G   YI+KP+ L   +E +  +I
Sbjct: 1390 YETTRQIRRNHRFADLPIVFLTAKAMPGDRESAIAAGASDYITKPVDLDELIELMGSWI 1448


>gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 236

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQE 58
           M K +++VED +   +     ++ +GY  L+   G  AL+L   H  +  + ++DI L  
Sbjct: 1   MTKTILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G  + +++++ S+     +I +TA   + D+      G + Y++KP S S  +  +  
Sbjct: 61  IDGFAVCRELRQKSKTLG--IIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDA 118

Query: 119 YIGE 122
               
Sbjct: 119 LYRR 122


>gi|255009666|ref|ZP_05281792.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 229

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED +   +L +  +E SGY      +G+  L L R  +  ++I D+ L ++SG
Sbjct: 1   MIKILVVEDEQRVAELLKRGLEESGYQVELAYDGVWGLRLFRAGEFQMVISDVILPKMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+  +    +PV+ +TA     D+      G + Y+ KP         IK  + 
Sbjct: 61  FELCKEIRNINN--RVPVLMLTALGTTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|284038429|ref|YP_003388359.1| Crp/Fnr family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283817722|gb|ADB39560.1| transcriptional regulator, Crp/Fnr family [Spirosoma linguale DSM
           74]
          Length = 348

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++++EDNE   +   +++E +GY      NG   +E A   KPD++I DI +  + G
Sbjct: 1   MKTILLIEDNEAIRENTAEILELTGYTVETAENGKLGVEKALARKPDLVICDIMMPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +     ++ +L  +P I +TA   + D  +  + G + Y++KP   S  +  I+  + 
Sbjct: 61  YGVLHIFNKNPQLSGVPFIFLTAKTERNDLRKGMELGADDYLTKPFDESELLSAIEGRLN 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|237723313|ref|ZP_04553794.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229447835|gb|EEO53626.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1337

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y+     NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 1072 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1130

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+ + IK + E   IPVI +TA   + D     + G + Y+ KP ++ I    +   +  
Sbjct: 1131 ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1190

Query: 122  EA 123
             A
Sbjct: 1191 RA 1192


>gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+ +    E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 66  VIQKIRNEKI--ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123


>gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21]
 gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21]
          Length = 588

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ EDN +N ++   +I   G      ++G EA+E   +   D+I MD Q+ E+ G 
Sbjct: 457 ARVLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVEAFSRQPYDLIFMDCQMPEMDGY 516

Query: 63  EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + T+ I++      +   VIA+TA AM G  E     G + Y+SKP +L    E I K+
Sbjct: 517 QATRAIRQRELGSGKHTTVIALTAHAMAGAREYCLTAGMDDYLSKPFNLEQLQELIAKW 575



 Score =  110 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN++   +  +L    G+ +     G   L+   +    ++++D++L  ISG+E+
Sbjct: 7   ILIVDDNQVVCDVLAELFRNEGFDSWGVATGEACLDEVTRASWKLVMLDVRLPGISGIEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIGE 122
            + I+ D    +  VI +T+        +  + G + Y+ KP   L + + T+ K +  
Sbjct: 67  LEAIRRD--HPKTEVIIMTSHVSLETAVQALRLGAQDYLFKPFDDLEMVIATVNKALER 123


>gi|186477531|ref|YP_001859001.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193990|gb|ACC71955.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 245

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D+ +   L    ++++GY A    +G        + +P V+++DI +    
Sbjct: 1   MNPQVLIVDDDPVVRDLLCRFLQSNGYDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL     ++   +  +IPVI VTA     D       G + Y++KP      +  I+  +
Sbjct: 61  GLRALTALRAAGD--DIPVIFVTARGTVADRIIGLSLGADDYLTKPFDPRELLARIQTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG]
 gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably
           luxR-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
          Length = 227

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|91772837|ref|YP_565529.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
 gi|91711852|gb|ABE51779.1| Response regulator receiver domain-containing protein
           [Methanococcoides burtonii DSM 6242]
          Length = 204

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D   N++L    +    Y      +G+EALE  +   PD+I++D+++ ++ G +
Sbjct: 7   KILVVDDEPWNLELMEAYLSGD-YEIALASDGVEALEKVKDFDPDIILLDVRMPKMDGYQ 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K D   + IPV+ VTA + K D  +    G + ++SKP+ +      +   +
Sbjct: 66  TCEKLKNDERTKFIPVVLVTALSEKEDRIKGIAAGADEFLSKPVDMLELKTRVHSLL 122


>gi|114561406|ref|YP_748919.1| osmolarity response regulator [Shewanella frigidimarina NCIMB 400]
 gi|114332699|gb|ABI70081.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 241

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRSLLERYLIEQGFQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQQEN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 229

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K+++V+D+    +L    ++  GY  +   +G EAL     + PD  ++I+D+ +  ++G
Sbjct: 2   KILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTN-PDTSLMILDVMMPNMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ K +++DS    IP++ ++A +   D+ +    G + Y++KP +    M  ++  + 
Sbjct: 61  LDVVKTVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007]
          Length = 290

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|317477946|ref|ZP_07937129.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905860|gb|EFV27631.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 1357

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             K++IVEDN+    +   + +   Y  L   +G E L L R   P++++ D+ +  +SG 
Sbjct: 1094 AKILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSGT 1152

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ KQIK D     IPV+ +TA           + G + YI+KP + ++ +      +
Sbjct: 1153 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1210


>gi|270294949|ref|ZP_06201150.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274196|gb|EFA20057.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1357

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             K++IVEDN+    +   + +   Y  L   +G E L L R   P++++ D+ +  +SG 
Sbjct: 1094 AKILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSGT 1152

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ KQIK D     IPV+ +TA           + G + YI+KP + ++ +      +
Sbjct: 1153 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1210


>gi|256820389|ref|YP_003141668.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
 gi|256581972|gb|ACU93107.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
          Length = 1296

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 65/118 (55%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +  V++V+DN   +    D +       L+  NG EAL L + H+PD+II D+ +  ++G
Sbjct: 1044 MYSVLLVDDNPDFLNYLYDELRPLFKSVLKAVNGEEALLLLKTHQPDIIISDVMMPVMNG 1103

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             ++ K++KE  ++  IPVI +TA +    ++   K G +AY+SKP  + + +  I   
Sbjct: 1104 YQLCKEVKEHLQISHIPVILLTAKSDTESQKIGYKLGADAYLSKPFDIDLLLSVISNL 1161


>gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 232

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G EAL++  +   D+ ++D+ L  I G
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++  +++ +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 64  LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|226356935|ref|YP_002786675.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226318925|gb|ACO46921.1| putative response regulator, SarP [Deinococcus deserti VCD115]
          Length = 344

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D+   +KL   ++  SG+    + + +EAL+L +   PD+II D+ +  ++G
Sbjct: 1   MPRILVVDDDAAILKLVSVILSRSGHEVRTSSHPVEALDLLKVFTPDLIISDVVMPYMTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  ++++ED +L  +P + +++ A +GD  R    G + Y+ KP +       I   + 
Sbjct: 61  LEFLEKVREDEKLSALPFMLLSSHAERGDVRRGMNLGADDYLPKPFTPQELNVAIDARLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|170757056|ref|YP_001781900.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122268|gb|ACA46104.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 234

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+     + ++ +   GY   Q  +G+EA+E  +     ++IMDI +  + G+E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFKGENYHMVIMDIMMPVMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+E S+   +P+I ++A     D+      G + YI KP S+   +  +K  I  A
Sbjct: 65  SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121


>gi|160888601|ref|ZP_02069604.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492]
 gi|156861915|gb|EDO55346.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492]
          Length = 1343

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             K++IVEDN+    +   + +   Y  L   +G E L L R   P++++ D+ +  +SG 
Sbjct: 1080 AKILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSGT 1138

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ KQIK D     IPV+ +TA           + G + YI+KP + ++ +      +
Sbjct: 1139 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1196


>gi|323698577|ref|ZP_08110489.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio sp. ND132]
 gi|323458509|gb|EGB14374.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio desulfuricans ND132]
          Length = 346

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           + V++V+D   N+ L  + ++   Y  L   NG EALE+      PD++++D+ L  + G
Sbjct: 7   QTVLVVDDIPTNLDLLVETLKDE-YRVLAALNGREALEIVHSATPPDIVLLDVMLPHMDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++IK D   + IPVI VTA   + D+ R  + G   YI+KPIS ++ +  ++ ++
Sbjct: 66  YTVCREIKADLRSRNIPVIFVTARDQEEDQTRGFEAGGVDYIAKPISPAVVLARVRTHL 124


>gi|312891997|ref|ZP_07751498.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
 gi|311295494|gb|EFQ72662.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
          Length = 1392

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVEDN    +   D +  S Y   +  NG E    A    PD+++ DI +  + G+E
Sbjct: 1135 HVLIVEDNSEMRQYLADSLGAS-YKISEAANGREGWHKALALHPDLVVSDISMPYMDGIE 1193

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++++K D     IP+I +TA A + D+    + G   Y++KP    I    IK  +
Sbjct: 1194 LSRKLKSDKRTSHIPIILLTAMASQQDQLAGLELGVSDYLTKPFHFEILNIKIKNLL 1250


>gi|298374416|ref|ZP_06984374.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
 gi|298268784|gb|EFI10439.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
          Length = 1369

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++ VEDNE   +   +  +T  Y  +  +NG   LE A +  PDVI+ D+ +  ++G+
Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKALEILPDVIVSDVMMPVMNGI 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + +K D     IPVI +TA A +  +      G + Y+ KP SL++    I   +  
Sbjct: 1165 ECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKINNLLKR 1224

Query: 123  A 123
            +
Sbjct: 1225 S 1225


>gi|258593741|emb|CBE70082.1| putative response regulator in two-component reguatory system,
           sigma54 dependent transcriptional regulator [NC10
           bacterium 'Dutch sediment']
          Length = 460

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++V+D +   +    L+E  GY  +   +G  ALEL     PD++I D+++ ++ G
Sbjct: 1   METILVVDDEQGIREFLTVLLEKQGYRVITASDGERALELIAHQSPDLVISDVRMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +   I++      +PVI VTA+A      +  + G   YI+KP  +      ++K + 
Sbjct: 61  IGLLTGIRKTD--PHLPVIMVTAYASMDSTIQAMRLGAHDYITKPFRIDEIRLVVEKALA 118

Query: 122 E 122
           +
Sbjct: 119 K 119


>gi|288929066|ref|ZP_06422912.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330050|gb|EFC68635.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 898

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++  +DN+   ++ R L+ET  Y  L   NG+ AL++A  + PD+++ D+ + +++GLE
Sbjct: 655 TILFTDDNDDVCQMARTLLETH-YRVLTAPNGVVALQMAELNIPDLVVSDVMMPQMNGLE 713

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  ++K+ +    IPVI +TA  +        + G +AYI+KP S  + +  I+  +
Sbjct: 714 LCSRLKQSTATSHIPVILLTARTLDEQRIEGYEHGADAYITKPFSAPLLLARIQNLL 770


>gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
 gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
          Length = 249

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED     +L  + +    Y      +G EAL+     + D +I+DI +  + GL+
Sbjct: 21  RILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIMMPVMDGLQ 80

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++  E   +PV+ +TA     D       G + Y+ KP +    +  ++  + +
Sbjct: 81  VLRKLRQRKE--HVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLRK 137


>gi|68477999|ref|XP_717003.1| hypothetical protein CaO19.5181 [Candida albicans SC5314]
 gi|68478134|ref|XP_716936.1| hypothetical protein CaO19.12648 [Candida albicans SC5314]
 gi|46438625|gb|EAK97953.1| hypothetical protein CaO19.12648 [Candida albicans SC5314]
 gi|46438696|gb|EAK98023.1| hypothetical protein CaO19.5181 [Candida albicans SC5314]
          Length = 1081

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N KL   ++E  G+      NG+EA E  +++K DV++MD+Q+  + G E
Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934

Query: 64  ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            T++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M+T
Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994

Query: 116 IKKYI 120
           I K I
Sbjct: 995 INKCI 999


>gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 657

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 2/122 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ EDNE N+ L  D +   GY     RNG EAL+LAR+  PD I+MDIQ+  + G+E
Sbjct: 536 HILLAEDNEDNISLLLDFLPFHGYALTIARNGQEALDLARECHPDAILMDIQMPVMDGIE 595

Query: 64  ITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             ++++ D +  L   PVIA+TA AM GD +R    G +AYI KP+ L    + I   + 
Sbjct: 596 AIRRLRADPDPGLAHTPVIALTALAMPGDRDRCLAAGADAYIVKPLVLHDLPDQIAAVMH 655

Query: 122 EA 123
           ++
Sbjct: 656 QS 657


>gi|302878235|ref|YP_003846799.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302581024|gb|ADL55035.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 636

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 64/116 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED+   +KL   +++++G+      NG+EAL + RQ  P +I+ D  + E+ GL 
Sbjct: 324 RVLVVEDDPATLKLLDAMLKSAGHTVALAANGLEALRMIRQQVPQLIVSDWMMPEMDGLS 383

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + ++++E    + I  + +TA        +  + G + Y+ KPIS  IF+  ++  
Sbjct: 384 LCRKLRESDAWRNIYTVILTAQESPERLIQAFEAGADDYLLKPISPKIFLARLRAA 439


>gi|253689068|ref|YP_003018258.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755646|gb|ACT13722.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 229

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+I+ED+     +    +   GY      +G + L +A   KPD+I++D+ L +++G 
Sbjct: 4   KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQKGLHMALTSKPDLILLDVMLPKMNGS 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   +++ S    IPVI VTA   + +     + G + Y+ KP +    +  ++  +  
Sbjct: 64  EVLSALRQRS---NIPVIMVTAIGDEPERIGALRYGADDYVVKPYNPQEVVARVQAVLRR 120


>gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900]
          Length = 319

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IPVI +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|197336880|ref|YP_002157952.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197314132|gb|ACH63581.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 864

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEIS 60
           K V++VEDN +N K+   L++ +G+      NG EAL++   +     +++MD  +  + 
Sbjct: 742 KTVLVVEDNAINQKVASLLLKKAGFSVEIANNGQEALDMVMSKTSPYSLVLMDCMMPIMD 801

Query: 61  GLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           G   T+ I+   E+ E + +P+IA+TA     D ++  + G + Y++KP    + +E ++
Sbjct: 802 GFAATEAIRKWEENQEKKRLPIIALTASVFVEDIDKCYQSGMDDYVAKPFRKELILEKLE 861

Query: 118 KY 119
            Y
Sbjct: 862 AY 863


>gi|187934010|ref|YP_001886396.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722163|gb|ACD23384.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum B str. Eklund 17B]
          Length = 220

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++ ++D    + + +  +E  G+I     N  E +   +  K D+I++DI + EI G
Sbjct: 1   MATILAIDDEIGILNIIKVALEKEGHIVTTVSNANE-ISYNQYTKYDLILLDIMMPEIDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  +I+    L + P++ +TA  M+ D  +    G + YI+KP  +S     +  ++ 
Sbjct: 60  FTLCNKIRS---LVDCPILFLTAKTMEEDIVKGLSFGGDDYITKPFGISELRARVNAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 245

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|94499427|ref|ZP_01305964.1| putative response regulator [Oceanobacter sp. RED65]
 gi|94428181|gb|EAT13154.1| putative response regulator [Oceanobacter sp. RED65]
          Length = 560

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N ++ + L+E  G+   + +NG EA+   +    D+++MD+ +  + GLE
Sbjct: 2   HILVVDDQVTNREILKWLLEDEGHQVSEAQNGEEAVNEFKSGDFDLVLMDVIMPIMDGLE 61

Query: 64  ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            TK+IKE  +    +PVI +TA       +     G + ++SKP +  I    I  ++ 
Sbjct: 62  ATKRIKEIGQEDNYVPVIFLTALDDAKALKDCLDSGGDDFLSKPYNEVILKAKIHAHLR 120


>gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 232

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D    +KL +  ++  GY  L+  +G EAL +A   +PD+ ++D  L ++ G+
Sbjct: 4   AKILVVDDERAILKLMQIALKGHGYEVLEASSGEEALVVASTKRPDLAVIDWGLPDMEGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++E     ++PVI +T    + D+      G + Y+ KP  +   +  I+  +  
Sbjct: 64  EVLRRLRE---WSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRH 120

Query: 123 A 123
           A
Sbjct: 121 A 121


>gi|114321576|ref|YP_743259.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227970|gb|ABI57769.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 480

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN  N++L   ++   GY      +G  AL+  +    D+I++DI++ ++ G E+
Sbjct: 14  VLVVDDNPANLRLMVSVLREGGYAVRVAPSGRLALDSVQARPADLILLDIRMPDLDGYEV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D    +IPVI ++A     D+ R    G   YI+KP      +  ++ ++
Sbjct: 74  CRRLKADPARHDIPVIFLSALCEPADKVRGFAVGAVDYITKPFVAEEVLVRVQSHL 129


>gi|260769733|ref|ZP_05878666.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972]
 gi|260615071|gb|EEX40257.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972]
 gi|315182272|gb|ADT89185.1| chemotaxis protein CheY [Vibrio furnissii NCTC 11218]
          Length = 119

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D+    ++    ++ +GY      +G EAL  A+  K DV+I D+ +  + G
Sbjct: 1   MTKILAVDDSISIRQMVSHTLKDAGYDVETANDGREALTKAQSTKFDVVISDVNMPNMGG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ K I+ + + + IP++ +T       ++  +  G   ++ KP +    ++T+K+ +
Sbjct: 61  FELVKAIRGNPQYKFIPILMLTTETSMEKKQEGKLAGATGWLVKPFNPDTLLKTLKRVL 119


>gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 231

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+IVED      L    ++   Y   +     EALE   ++  D+ I+DI L + S
Sbjct: 1   MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIMLPDAS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I++       P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLTICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6]
 gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 244

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+     L R  +   G+  L   +      +  +   D+I++D+ L    GL 
Sbjct: 11  RIVVVDDDARIRDLLRRYLTQEGFEVLLAEDSKALNRILTRETVDLIVLDLMLPGEDGLS 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +++   P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 71  ICRRLRAANDI--TPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRR 127


>gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 269

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  A++ AR+ +PD +++D+ L ++ GL 
Sbjct: 44  RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   EL ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 104 VLGRLRR--ELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 161


>gi|83643354|ref|YP_431789.1| CheY-like receiver protein [Hahella chejuensis KCTC 2396]
 gi|83631397|gb|ABC27364.1| FOG: CheY-like receiver [Hahella chejuensis KCTC 2396]
          Length = 120

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D+    ++    ++ +GY   +  NG EAL  A+  K D++I D+ +  + G
Sbjct: 1   MAKILAVDDSASMRQMVTFTLKGAGYQVDEAANGQEALSKAKSGKYDLVITDVNMPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + K ++ +   +  P++ +T  +    +   +  G   +I KP +    + T+KK +G
Sbjct: 61  ISLIKNLRAEGAYKFTPLLMLTTESGADKKAEGKAAGATGWIVKPFNPDQLVATVKKVLG 120


>gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 232

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+  ++   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016]
 gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016]
          Length = 243

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 10  KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 70  ICRRLRNANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 126


>gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
 gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
          Length = 278

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +    L    +   G+      NG +A  L  + + D+ ++DI L ++ G E
Sbjct: 46  RILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIMLPDVDGFE 105

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+ +   +  PVI +TA   + D+      G + Y+ KP      +   K  +  
Sbjct: 106 LLRTIRTE---RTYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRR 161


>gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 226

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     +   GY  ++  NG   LE+A + + D+II+D+ L EI+G
Sbjct: 1   MIKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++I++   + E+P+I +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRIRK---VSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|160937915|ref|ZP_02085273.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439141|gb|EDP16895.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
          Length = 960

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 5/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEIS 60
           +V++ +DNELN ++ R L+E  G       +G EA+ L +         ++MDI++  + 
Sbjct: 839 RVLLADDNELNREIARTLLEMRGMEVETAEDGQEAVNLYKSRGAGYFSAVLMDIRMPRMD 898

Query: 61  GLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           GLE T+ I+  ED     IP++A+TA A + D+ R  + G   Y+ KP+ +   ++ +KK
Sbjct: 899 GLEATRTIRAMEDENTDRIPILAMTANAFEEDKARAYEAGMNGYLVKPLDMEAVLDELKK 958

Query: 119 YI 120
           ++
Sbjct: 959 HL 960



 Score = 93.7 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59
           V++V+D+ L       ++E +G  +L   +G  A+E  ++        D+ ++D ++ ++
Sbjct: 701 VLVVDDDPLVGSQATSILEKAGAQSLWVDSGFRAVEEVQRLLEENRHYDIAMIDWKMPDM 760

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E  ++I+      +  +I ++A+     E+  R  G   +ISKP+      +   + 
Sbjct: 761 DGVETARRIRAL-VGPDTTIIMISAYDWSRIEDEARNAGVNCFISKPLFGGTIYDAFARA 819

Query: 120 IGEA 123
           +  +
Sbjct: 820 VNRS 823


>gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 220

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V+IV+D         D +E  GY  +    G +A +L +Q++P +++ DI++ ++ 
Sbjct: 1   MPLTVLIVDDEPGIRLAVTDYLEAVGYTVISAATGKQAWQLVQQYRPHLLVTDIRMPQMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K +++    + +PVI +T  +   +  R  K GC+AY++KP +L      I+  +
Sbjct: 61  GYELVKLVRQQPAFRLLPVIYLTECSQTQERIRGYKLGCDAYLAKPFNLEELAAVIRNLL 120

Query: 121 GE 122
             
Sbjct: 121 DR 122


>gi|126651922|ref|ZP_01724114.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126591191|gb|EAZ85300.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 915

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           K ++IV+D+  N+   +  +ET G   L  ++G+E LE+ + H   D+++MDI +  + G
Sbjct: 791 KNILIVDDDNRNIYALKTALETRGMNILVAKDGLECLEVLQAHHEIDLVLMDIMMPNMDG 850

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E    I++  +  ++P+IA+TA AMK D ++  + G   YISKP++L   +  ++ ++
Sbjct: 851 YEAMTIIRQQMKRTDLPIIALTAKAMKNDRDKSLQAGASDYISKPLNLDQLISVLRVWL 909


>gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 246

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQE 58
             ++++VED++   +   + ++  G+      NG EAL       Q   D+I++D+ L  
Sbjct: 15  TARLLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPG 74

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GL++ +Q++ ++     P++ ++A   + D     + G + Y+ KP  +   +   + 
Sbjct: 75  LGGLDVCRQLRGNNIT--TPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRA 132

Query: 119 YIGE 122
            +  
Sbjct: 133 LLRR 136


>gi|148656471|ref|YP_001276676.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148568581|gb|ABQ90726.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 202

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 62/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N+ +    +  +GY  L    G  AL+ A    PD+II+D+ +  I G E
Sbjct: 7   TILVVDDTPANLAILFTGLRNAGYKVLINERGDIALQTAAYALPDLIILDVMMPGIDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++KED   ++IPVI +TA     DE    + G   YI+KPI + + +  I  ++
Sbjct: 67  TCRRLKEDPRTRDIPVILMTALTDPIDEVTGLRAGAVDYITKPIHVEVVLARISTHL 123


>gi|307331969|ref|ZP_07611063.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882402|gb|EFN13494.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 227

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 8   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 67

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 68  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121


>gi|302519444|ref|ZP_07271786.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428339|gb|EFL00155.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 231

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L   R+ +PD+I++D+ L  I G E+ 
Sbjct: 11  LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEVC 70

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 71  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124


>gi|162449627|ref|YP_001611994.1| two component system transcriptional regulatory protein [Sorangium
           cellulosum 'So ce 56']
 gi|161160209|emb|CAN91514.1| two component system transcriptional regulatory protein [Sorangium
           cellulosum 'So ce 56']
          Length = 234

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED     +  R ++   GY  ++   G + +  A    PD++++D+ L ++ GLE+
Sbjct: 8   VLLIEDEPQMRRFLRAMLAARGYRLVEAETGSDGIAQATTRNPDLVLLDLGLPDMDGLEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++++E      +P+I ++A   + D+     GG + Y++KP S    +  ++  + 
Sbjct: 68  TRRLRE---WSAVPIIVLSARGQEQDKIDALDGGADDYLTKPFSAGELLARLRVALR 121


>gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
 gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
          Length = 224

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +  VED+    +L    +E++G+ A    +G   LE      P+++++DI L    G+E+
Sbjct: 2   IFCVEDDGNIRELVVYTLESTGFQARGFEDGSSFLEALALETPELVLLDIMLPGEDGMEL 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K   + ++IPVI VTA   + D+ +    G + Y++KP  +   +  IK  +  +
Sbjct: 62  LRKLKASKKTKDIPVIMVTAKGAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLRRS 120


>gi|51473435|ref|YP_067192.1| response regulator PleD [Rickettsia typhi str. Wilmington]
 gi|51459747|gb|AAU03710.1| response regulator protein [Rickettsia typhi str. Wilmington]
          Length = 450

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 62/118 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL + ++ K D I++D+ + E+ G
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALSILKKEKIDTILLDVMMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K IK D     IPV+ +TA +   D  +  + G + ++ KPI+ +     +K  
Sbjct: 61  FEVCKIIKTDPGTTHIPVVMITALSDIDDRVKGLEAGADEFLIKPINDTALFVRLKSL 118



 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  + ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIKQILVKLTKYVKVISNSDE-LDIINEYTPDLVIISSTLENEDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +E+  + +I            +  + G   Y   PI  +  +  I+  +  
Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFIYPIEENELLARIRTQLRR 270


>gi|51246143|ref|YP_066027.1| two-component system response regulator [Desulfotalea psychrophila
           LSv54]
 gi|50877180|emb|CAG37020.1| related to two-component system response regulator (hybrid family)
           [Desulfotalea psychrophila LSv54]
          Length = 363

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D   N+ L + ++  S Y      +G  AL  A +H PD+I++DI + E+ G E
Sbjct: 9   TILLVDDEPNNLSLLQQVLADS-YNLKFANSGKSALAGAVKHMPDLILLDIMMPEMDGYE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + +K+D     IPVI VTA     D++R    G   Y++KPI   I +  +  ++ 
Sbjct: 68  VCRLLKKDPLTVNIPVIFVTAKGEIADKKRGFDLGAVDYVTKPIEPPILLARVATHLR 125


>gi|326335904|ref|ZP_08202081.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325691868|gb|EGD33830.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 241

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  SG+     +NGME  +  R+   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPYDMCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +E  ++P+I +TA  M+ D  +  K G + Y++KP    + +  I+  +  
Sbjct: 66  TLAKEIREKNE--KVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQR 123


>gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 774

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D++   +     ++   Y+     +G          +  ++I+DI L +++G+ 
Sbjct: 2   KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++  +   ++PV+ +TA     D+      G + Y+ KPI     +  ++  +  A
Sbjct: 62  LCRKLRSHN--YQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119



 Score =  110 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 55/120 (45%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++ + D+   ++L   L+   G          +  ++     PD++I+D+++   +G++
Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+ +   + +P++ +T          + + G + +ISKP+     +  +   +  +
Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606



 Score = 51.3 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ--EISGLE 63
           +IV+ + +  +       + G  A        A  +  +++P +I++++     E  GL 
Sbjct: 365 LIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGLM 424

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + + I       EIPV+  +  +   D   + + G  A++ KP+S    ME +
Sbjct: 425 LLEDI--AYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIV 475


>gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624]
          Length = 319

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDHAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IPVI +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|260170293|ref|ZP_05756705.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1464

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1264

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + + E
Sbjct: 1265 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323


>gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
 gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
          Length = 242

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRVREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EAL+   +  PDV+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAEE-PDVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRVFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARR 117


>gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 231

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D    ++  R  +   G+      +G EAL  A +  P V+++D+ L ++ GL 
Sbjct: 6   RVLVVDDEPQLLRALRINLNARGFAVTTAADGREALTAASRMDPHVVVLDLGLPDMDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PVI ++A +   D+      G + Y++KP  +  F+  ++  +  
Sbjct: 66  VLEGLR---GWTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRR 121


>gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC
           19977]
 gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus]
          Length = 228

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED +        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRAKS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116]
          Length = 1054

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DN +N K+    +  +GY      NG EA+E+  +++  +I+MD  +  + G E
Sbjct: 771 KILVVDDNTVNQKIAGLHVTKAGYEFDIAANGQEAVEMFAKNQYALILMDCMMPVMDGFE 830

Query: 64  ITKQIKEDSELQE----IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            TK+I++  +       IP+IA+TA  +  D ++    G + Y+ KP    I  + + K 
Sbjct: 831 ATKRIRQLEKESNRGYQIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAPILKDKLSKA 890

Query: 120 I 120
           +
Sbjct: 891 V 891



 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            ++++VEDN +N K+   L+  +GY      NG  AL++ +Q +  D+I+MD  +  + G 
Sbjct: 934  RILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDMFQQDNSFDIILMDCMMPVMDGF 993

Query: 63   EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E TK+I+   +   L + P+IA+TA  +  D +R    G +AY+ KP+     +  I+  
Sbjct: 994  EATKEIRAYEKVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESV 1053

Query: 120  I 120
            I
Sbjct: 1054 I 1054


>gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
 gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
          Length = 225

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I+ED E   +   + +   GY      +G E LEL      D+I++D+ L  I GL+
Sbjct: 2   HILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +Q +E +     PV+ ++A     D+      G   Y++KP         I+     
Sbjct: 62  ILRQFRETN--SSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRR 118


>gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
 gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1710

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 59/117 (50%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED   N  L   L+ET G+      NG EA+EL     P +I MD+Q+  ++G +
Sbjct: 1503 RILVAEDRPDNRHLIVKLLETVGFEVQAAVNGQEAIELWESWSPHLIWMDMQMPVMNGYQ 1562

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              + IK   + ++  +IA+TA   + +   I   GC  ++ KP         I++Y+
Sbjct: 1563 AIQYIKATPKGEDTVIIALTASVFEEERHNIIALGCNDFVRKPFEEQEIFAKIQQYL 1619


>gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
 gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
          Length = 227

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED E   ++ +  +E  GY +   + G EA+E       D+I++D+ L  IS
Sbjct: 1   MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPNIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+  + +  IP+I +TA     D+      G   YI+KP  +   +  I+  +
Sbjct: 61  GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|91202235|emb|CAJ75295.1| similar to two component response regulator [Candidatus Kuenenia
           stuttgartiensis]
          Length = 271

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 63/118 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++IVED E N  +  + I   G+I++   NG+ AL   R+  PD+I++DI + E+ G 
Sbjct: 5   ARILIVEDKESNRNILNERINELGHISILAENGLSALAKVREQPPDIILLDIMMPEMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+   +K ++  + IPVI ++A        R  + G + Y++KP +  +    I   +
Sbjct: 65  EVLCHLKGNASWRHIPVIMISAIGDMDSIVRCIEKGADDYLTKPFNPVLLKARIDSCL 122


>gi|71907263|ref|YP_284850.1| response regulator receiver [Dechloromonas aromatica RCB]
 gi|71846884|gb|AAZ46380.1| Response regulator receiver [Dechloromonas aromatica RCB]
          Length = 123

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 61/123 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IV+D    +     L++  G+      +G EAL       PD++++D+ + + S
Sbjct: 1   MTKKILIVDDEPNIVISLEFLMKKEGFAVAVAVDGEEALAKVADFDPDLVLLDVMMPKKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + ++ D     + ++ +TA     +  +    G +AY++KP S    +  +K  +
Sbjct: 61  GFEVCEALRADPARAGLKIVMLTAKGRDTEVAKGLAIGADAYVTKPFSTKELVAMVKAML 120

Query: 121 GEA 123
           G A
Sbjct: 121 GVA 123


>gi|148545543|ref|YP_001265645.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148509601|gb|ABQ76461.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 239

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D++   +L  D +  +GY  L   +G +  +   +HK +++++D+ L    
Sbjct: 1   MSTTLLVVDDDDEIRELLCDYLTDAGYSVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +Q++    L    VI ++A     D     + G + Y++KP      +  IK  +
Sbjct: 61  GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
 gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
          Length = 224

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +    +    ++ + +      +G EAL+ +     D+I++D+ L +++G E
Sbjct: 2   KILVVEDEKDLNNIITKNLKKNNFSVDSVYDGEEALKYSDYGNYDLILLDVMLPKMNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++ +    E  V+ +TA     D+ +    G + Y+ KP      +  I+  I  
Sbjct: 62  VVKHLRANKN--ETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRR 118


>gi|320159178|ref|YP_004191556.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
 gi|319934490|gb|ADV89353.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 9   EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68
           +D++   +   D +  +G+      NG    +      PD+II+DI +    G  + ++I
Sbjct: 2   DDHQDLREALSDYLGKAGFDVQCAENGQVMWKKLELCAPDLIILDIMMPGDDGFTLCQKI 61

Query: 69  KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +      ++P+I +TA A + D     + G + Y++K  S    +  IK  +  +
Sbjct: 62  R---RYSDVPIIMLTAVAEEADRVAGLEMGADDYMTKSFSPRELLARIKTILRRS 113


>gi|307719669|ref|YP_003875201.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306533394|gb|ADN02928.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV+D E+N++ F  ++   G+   + R+G EAL + ++ +PD++++D  + ++SG 
Sbjct: 4   KKILIVDDEEINLEFFEIMLSKLGFEVYKARDGEEALLVMKEQRPDLVLLDNIMPKLSGW 63

Query: 63  EITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E+T+ +K++ + +    IP++  +A     D+    + G E YI+KP + S  +  I   
Sbjct: 64  EVTRIVKQEPDYRDVAHIPIVMFSAMDDVRDKIEGFELGVEDYITKPFNFSEVLARINSV 123

Query: 120 IG 121
           + 
Sbjct: 124 LR 125


>gi|289435683|ref|YP_003465555.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171927|emb|CBH28473.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313632083|gb|EFR99179.1| regulatory protein VanR [Listeria seeligeri FSL N1-067]
 gi|313636469|gb|EFS02215.1| regulatory protein VanR [Listeria seeligeri FSL S4-171]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I +D++  + L +  ++  GY      +G E   L ++ +P ++I+DI + E++
Sbjct: 1   MTTSILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ + ++ +  L   P++ ++A A   D+      G + Y+ KP +       +K  +
Sbjct: 61  GLEVCRLMRSEGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|229005054|ref|ZP_04162778.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228756156|gb|EEM05477.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 238

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M++ ++IV+D    +++ R  +E  G+  L+ R+G  AL   ++ K D+ I+DI +  I+
Sbjct: 1   MVRTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++++ +   +P+I ++A   + D+      G + +ISKP SL   +  I+  +
Sbjct: 61  GYELIKIVRKEYK---MPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|228473133|ref|ZP_04057890.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275715|gb|EEK14492.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC
           33624]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  SG+     +NGME  +  R+   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPYDMCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +E  ++P+I +TA  M+ D  +  K G + Y++KP    + +  I+  +  
Sbjct: 66  TLAKEIREKNE--KVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQR 123


>gi|227819020|ref|YP_002822991.1| two-component transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227338019|gb|ACP22238.1| two-component transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D      +    IE +G  ++  RNG EA+   R+   D+ I+DI + E+ G
Sbjct: 1   MLRILVVDDEPHIRDVICFAIERAGMTSVVARNGAEAMMAFRRGNVDLAILDIGMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++I+ +S L   PV+  +A   + D     + G + Y++KP S    +  +K  + 
Sbjct: 61  LEVCRRIRTESAL---PVLFPSARDDEIDRVVGLEIGGDDYVTKPFSPRELIARVKAILK 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|149371430|ref|ZP_01890916.1| response regulator receiver domain protein (CheY-like)
           [unidentified eubacterium SCB49]
 gi|149355568|gb|EDM44127.1| response regulator receiver domain protein (CheY-like)
           [unidentified eubacterium SCB49]
          Length = 121

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 63/120 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ K++IV+D    +       +  G+     R+G EALE+   H PD++++DI +  + 
Sbjct: 1   MMHKILIVDDEPNIVMSLEYAFKKKGFEVFIARDGSEALEIVENHIPDIVLLDIMMPNVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  +QIK    LQ   V+ +TA     D E+  K G + Y++KP S+   +  I++ +
Sbjct: 61  GYQTLQQIKNKPLLQATKVVFLTAKNRASDIEKGLKLGADKYLTKPFSIKKIVSEIQELL 120


>gi|116878444|ref|YP_356197.2| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|114843080|gb|ABA88027.2| two component transcriptional regulator, winged helix family
           [Pelobacter carbinolicus DSM 2380]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++VED     +     +E  GY  +   +G +ALELA   +  ++I+D+ L  ISG
Sbjct: 3   SPHILLVEDELHIARGLIFNLEQEGYRVIHVSSGEQALELAPWSQCLLVILDLMLPGISG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +Q++       +P++ +TA   + D     + G + Y++KP SL+ F+  ++  + 
Sbjct: 63  LEVCQQLRAQD--PRLPILILTALGKEQDRIAGLEAGADDYLTKPFSLTEFLLRVRGMVN 120

Query: 122 EA 123
            +
Sbjct: 121 RS 122


>gi|160880001|ref|YP_001558969.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428667|gb|ABX42230.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED++   +L + ++  +GY      NG+ ALEL  +   D+I++D+ + E+ G E 
Sbjct: 4   ILVVEDDKNTARLMKAVLMHAGYEVFCADNGVSALELMDKQHIDLIVLDVMMPEMDGYEF 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           TKQ++  ++    P++ VTA  +  D+ +    G + Y+ KP++    +  IK  +  A
Sbjct: 64  TKQLRGSND--NTPILMVTAKQLPEDKCKGFLAGTDDYMVKPVNEDEMLLRIKALLRRA 120


>gi|330501377|ref|YP_004378246.1| response regulator receiver protein [Pseudomonas mendocina NK-01]
 gi|328915663|gb|AEB56494.1| response regulator receiver protein [Pseudomonas mendocina NK-01]
          Length = 121

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 70/119 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+   M     ++E  G+  L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+Q+ +D+E   IPVI VT    + D+   ++ G + Y++KP+     ++T+   +
Sbjct: 61  FQATRQLTKDAETSHIPVIIVTTKDQETDKVWGKRQGAKDYLTKPVDEDTLLKTLNAVL 119


>gi|317474353|ref|ZP_07933627.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316909034|gb|EFV30714.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1320

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDN          +    Y   +  +G+EAL++ ++   D+++ DI +  + G+E+ 
Sbjct: 1067 LIVEDNLEMQDFISKRL-MDKYDVYRAADGLEALKVLKEFDIDIVVSDIMMPNMDGMELL 1125

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K IKE  E   IPVI ++A +         + G +AYI KP SL   M  I+  +
Sbjct: 1126 KNIKETVEYSHIPVILLSAKSDLESRINGLELGADAYIEKPFSLEYLMAQIQNLL 1180


>gi|256843524|ref|ZP_05549012.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|293381453|ref|ZP_06627449.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|312978303|ref|ZP_07790046.1| DNA-binding response regulator DltR [Lactobacillus crispatus
           CTV-05]
 gi|256614944|gb|EEU20145.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|290921970|gb|EFD98976.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|310894822|gb|EFQ43893.1| DNA-binding response regulator DltR [Lactobacillus crispatus
           CTV-05]
          Length = 221

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED    +++    +E +GY      NG++A+E A+++  DVI++DI +  + G+ 
Sbjct: 2   KILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             K+I+E  +  +  ++ +TA A   D       G + Y++KP SL   +  ++ 
Sbjct: 62  ALKKIRESGD--KTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRS 114


>gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
 gi|156111849|gb|EDO13594.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
          Length = 1464

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1264

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + + E
Sbjct: 1265 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323


>gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
 gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
          Length = 242

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR---QHKPDVIIMDIQLQEIS 60
           ++++VED++       + + + G+     ++G+ AL+      +   D+II+D+ L  ++
Sbjct: 13  RILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+ D +    P++ ++A   + D     + G + Y++KP  L+  +   +  I
Sbjct: 73  GLELCRKIRNDEDY--TPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALI 130

Query: 121 GEA 123
             +
Sbjct: 131 RRS 133


>gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL103PA1]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+I+ED E   +    ++   G+      NG + LE+  ++  D++++D+ +  + G
Sbjct: 1   MTRVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLMMPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++      + +I VTA   + D+    + G + Y++KP S    +  I+    
Sbjct: 61  TEVCRQLRQRG---NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|300726552|ref|ZP_07059996.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
 gi|299776166|gb|EFI72732.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
          Length = 1330

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++++EDN    +   D +    +   Q  +G E L  A    P ++I DI +  + G E
Sbjct: 1073 TILVIEDNAGIRQYIADSLSDR-FTVYQAADGREGLAKALDLIPTIVISDIMMPAMDGNE 1131

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K +K D     IPVI +TA      +E   + G ++YI+KP S S+ +  I   I +
Sbjct: 1132 LCKALKTDMRTSHIPVILLTAKDSNQAKEEGYEAGADSYITKPFSRSLLVTRIDNLIAQ 1190


>gi|298290157|ref|YP_003692096.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296926668|gb|ADH87477.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 239

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VED+     L  D +   GY      +G        +  PD++I+DI L    GL
Sbjct: 4   ARVLLVEDDRDIRSLLVDFLGGEGYDVEAVGSGALMDRALMRGMPDLVILDIMLPGEDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I ++++  S    +P++ +TA     D     + G + Y+ KP +    +  I+  +  
Sbjct: 64  SICRRLRTKSR---VPILMLTAKHDDIDRIVGLEIGADDYLGKPFNPRELLARIRALLRR 120

Query: 123 A 123
           A
Sbjct: 121 A 121


>gi|260642820|ref|ZP_05417466.2| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260620414|gb|EEX43285.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1343

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++IVEDN+         + +  ++     NG EAL +  ++KPD++I DI + E+ G
Sbjct: 1075 SQRILIVEDNDELRNYLSQTL-SEDHLIQVCSNGKEALTVIPEYKPDLVISDIMMPEMRG 1133

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E+ + IK + E   IPVI +TA   + D     + G + Y+ KP ++ I   TI   + 
Sbjct: 1134 DELCQAIKSNIETSHIPVILLTALNNEKDILSGLRIGADEYVLKPFNIGILKATISNLLA 1193

Query: 122  -EA 123
              A
Sbjct: 1194 NRA 1196


>gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae RC385]
 gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio
            cholerae RC385]
          Length = 1331

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 69/115 (60%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   L++ +G   +   +G EALE       D+++MD+Q+  + G+  T
Sbjct: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ +   Q +P++A+TA AM  D ER  + G   ++SKPI +  F + ++ ++
Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNEHLSKPIEVDKFYQVLRHFL 1109



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+DN+    +   L+    +  +   NG EAL   +Q   D++ +D  +  ++G+
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116
           E+  ++K       +    VTA+  + + E     G      +A I KP++ S  ++ I
Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965


>gi|83643744|ref|YP_432179.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631787|gb|ABC27754.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 469

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 6/125 (4%)

Query: 1   MLK-----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55
           M K     ++++V+D   N++L  ++ +   +       G EALE+A +  PD+I++DIQ
Sbjct: 1   MAKQQPAGRILVVDDQATNIELLHNIFKEV-HEVEFAMTGEEALEMAIRDLPDIILLDIQ 59

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           L  + G E+ +++K ++  + IPVI +TA     D     K G   Y+ KP +    +  
Sbjct: 60  LPGMDGFEVCRRLKSNANTRHIPVIFLTAKNDVDDMVNGYKQGAVDYVIKPFNWFELIAK 119

Query: 116 IKKYI 120
           +   +
Sbjct: 120 VNTQL 124



 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IV+D+  N++    ++    Y      NG +A ++AR+  P +I++D+ L +  G 
Sbjct: 167 QRVLIVDDSVSNIETLASMLGDE-YELFFAVNGEQAKQIAREAHPHLIMLDVVLPDTDGY 225

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++ KQ+K + E ++IP++ VT+     DE R  + G   YI KP S SI     +  +
Sbjct: 226 QVCKQLKREPETRDIPIVFVTSRDSAEDETRGLEAGAIDYIIKPYSHSIVKARTRNLL 283


>gi|300866251|ref|ZP_07110963.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335770|emb|CBN56123.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 362

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED EL  +   +L++   + AL   NG   +E+A Q +PD+I+ D+ + E+ G
Sbjct: 1   MPKILVIEDEELIRENILELLDAEEFEALGAANGKIGVEMAAQQQPDLILCDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +   ++       IP I +TA A K D  +  + G + YI KP + +  +  I   +
Sbjct: 61  YSVLAALRSHPLTATIPFIFLTARAEKADTRKGMELGADDYIPKPCTPAELLAAIATRL 119


>gi|296137486|ref|YP_003644728.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797608|gb|ADG32398.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 240

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L    ++ +G       +G          + D+I++D+ L    GL 
Sbjct: 6   HILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++  S   +IPV+ +TA + + D     + G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRQLRAKS---DIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRA 122


>gi|256839824|ref|ZP_05545333.1| two-component sensor histidine kinase [Parabacteroides sp. D13]
 gi|256738754|gb|EEU52079.1| two-component sensor histidine kinase [Parabacteroides sp. D13]
          Length = 968

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVEDN         L+  + Y  +  +NG E LE+A +  PD+I+ D+ + E+ 
Sbjct: 715 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIAAEQMPDLILTDLMMPEMD 773

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++E   L  IP+I +TA +   +     + G +AY+ KP +       I K +
Sbjct: 774 GYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKLL 833

Query: 121 GE 122
            +
Sbjct: 834 EQ 835


>gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 221

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ +GY+ L   +G+ AL   ++ +PD+I++D  +  + G E 
Sbjct: 13  VLIVDDTPDNLAMLSDALDDAGYMVLVALDGLSALNRVQRRRPDLILLDAMMPGLDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K      +IPV+ +T         +  + G   Y++KPI     +  +  ++  +
Sbjct: 73  CRRLKAQPASADIPVVFMTGLTDTRHVVQGFEVGGSDYVTKPIQTDEVLARVAAHLRTS 131


>gi|212695100|ref|ZP_03303228.1| hypothetical protein BACDOR_04638 [Bacteroides dorei DSM 17855]
 gi|212662416|gb|EEB22990.1| hypothetical protein BACDOR_04638 [Bacteroides dorei DSM 17855]
          Length = 1347

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++EDNE   K       T  Y  L+  NG E LE+A    P++I+ DI + ++ G+++ 
Sbjct: 1089 LVIEDNEDIRKYIVSSFNTE-YKVLEGSNGKEGLEIALSTIPNIIVSDIMMPQMDGIQLC 1147

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + IKED     IPVI +TA     D+E   + G ++Y++KP S  +    +   +
Sbjct: 1148 RAIKEDIRTSHIPVILLTAKDSMQDKEEGYESGADSYLTKPFSAKLLRTRMLNLL 1202


>gi|212637155|ref|YP_002313680.1| response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain-containing protein [Shewanella piezotolerans
           WP3]
 gi|212558639|gb|ACJ31093.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain protein [Shewanella piezotolerans WP3]
          Length = 338

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   N+ +   ++ +  Y      +G +AL LA++  PD+I++D+ +  ++G 
Sbjct: 4   ATILVVDDTPENIDILVGILSSD-YKIRVAIDGPKALALAQKSTPDIILLDVMMPGMNGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K+D     IPVI VTA A   DE +    G   YI+KP+S  +    +K ++
Sbjct: 63  EVCERLKQDPLTCHIPVIFVTALAETADETQGFALGAVDYITKPVSAPVVQARVKTHL 120


>gi|120435017|ref|YP_860703.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117577167|emb|CAL65636.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 240

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  + Y     +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGTVLKDYLAMNDYEVTHAKNGMEGFEKFKKDDFDLCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +E  EIP+I +TA AMK D  +  K G + Y++KP    + +  IK  +  
Sbjct: 66  TLAKEIREKNE--EIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQR 123


>gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans
           CH34]
 gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Cupriavidus metallidurans CH34]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED           + T G        G EAL+  R  +PD++I+D+ L +ISG E+
Sbjct: 6   VLVVEDESAIADTILYALRTEGMQVETCTLGSEALDRVRSRRPDLVILDVGLPDISGFEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + ++      ++PVI +TA   + D     + G + Y+ KP S       ++  +  A
Sbjct: 66  CRSMR---TFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRA 121


>gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 252

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---------KPDVIIMDI 54
           ++++VED ++   +    +E  GY      +G  AL L +Q          + D++++D+
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDL 79

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            L +++GL+I + ++    +  IP++ ++A A + D     + G + Y++KP S+   + 
Sbjct: 80  MLPQVNGLDICRLLRYHGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137

Query: 115 TIKKYIGE 122
             +  I  
Sbjct: 138 RCRALIRR 145


>gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1066

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDNE+N  + RD ++  G++ +   NG +A++L  Q + D++ MD Q+ E+ G+E
Sbjct: 939  RILVAEDNEINQLVMRDWLDEMGHMVICVPNGRKAIDLLSQGRFDLVFMDAQMPEMDGIE 998

Query: 64   ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T+ I+          IP++A+TA+A+KGD ER    G + Y+SKP+        + ++
Sbjct: 999  ATRIIRRSPPQGVDPAIPIVALTAYALKGDRERFLAAGMDDYLSKPLDFEELHRILAEF 1057


>gi|332528620|ref|ZP_08404602.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332041936|gb|EGI78280.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 336

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 59/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ L  D ++ SG   L   +G  AL+ A Q +PD++++D  +  + G E+
Sbjct: 17  VLIVDDVPDNLSLLHDALDESGCTVLVALDGASALQRAAQARPDIVLLDAMMPGMDGFEV 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D+    IP+I +T            + G   Y++KPI     +  +  ++
Sbjct: 77  ARRLKADATTAHIPIIFMTGLTETEHLVAALEAGGTDYVTKPIRPKEVLARMHVHL 132


>gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1095

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 74/115 (64%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IVEDN +N  + +++++     +    +G+EA+ LA++ K D++ MDIQ+  + G E T
Sbjct: 776 LIVEDNAINQIVLQNMLKQFNISSDFANDGLEAVNLAKKKKYDIVFMDIQMPNMDGYEAT 835

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +Q+++  E  ++P+IAV+A A K D ++  + G   +++KP+S++   + + K+I
Sbjct: 836 RQLRKIPEYTDVPIIAVSAHAFKTDADKSLEAGMNDHLTKPVSINDLFKALSKWI 890


>gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 289

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN     +        G+ A    +G+E  +   +   D+II+DI L  + G+ 
Sbjct: 64  KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 123

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+E      +P+I +TA   + D+    + G + Y++KP S    +  IK  I  
Sbjct: 124 ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 179


>gi|218963798|gb|ACL13561.1| CopR [Pseudomonas fluorescens]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED        +  +  +G+   +  NG +AL+ A     D++I+D+ +  + G E
Sbjct: 2   RLLVAEDEPKIGIYLQQGLTEAGFNVDRFTNGKDALQHALSEAYDLLILDVMMPGLDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + +PV+ +TA     D  +  + G + Y+ KP + S  +  ++  +  
Sbjct: 62  VLQKVRASG--KNVPVLFLTARDRVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRR 118


>gi|256424519|ref|YP_003125172.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256039427|gb|ACU62971.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1306

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++ED+E      +D +    +  +   NG     + +   P++I+ D+ + E+ GLE+ 
Sbjct: 1062 LLIEDSEDFRFYLKDNLGVH-FHIIDAANGKLGWAILQHTVPNLIVSDVNMPEMDGLELC 1120

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+++  L  +PVI +TA A + D+      G   YI+KP +  + +  I+  + +
Sbjct: 1121 RRIRQNQRLAHLPVILLTARASEEDQLEALDNGATDYITKPFNYEVLLSRIRNIVSQ 1177


>gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 242

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D +   KL    ++  GY  LQ  +G E LE+ R+    +I++DI + +I G+ 
Sbjct: 14  TILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDVHLIVLDIMMPKIDGIH 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E   + E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 74  MCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129


>gi|220929662|ref|YP_002506571.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999990|gb|ACL76591.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+I+ED E      +   +   +I ++   G E L  ARQ  PDV+++D+ L  IS
Sbjct: 1   MENKVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + +++  E+ ++ +I +TA     D+ +  + G + Y+ KP + +  +   K  +
Sbjct: 61  GFQVCETLRK--EMPDVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1]
 gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++V+D         D +   GY      +G+  L      +PD +++D+ +  + GL
Sbjct: 19  QRILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAAWEPDAVVLDVMMPVLDGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +Q++   +    P++ +TA     +     + G + Y+ KP +L   +  ++  +
Sbjct: 79  GVCRQLRAMGD--RTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALL 134


>gi|160889014|ref|ZP_02070017.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492]
 gi|317479297|ref|ZP_07938432.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|156861481|gb|EDO54912.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492]
 gi|316904585|gb|EFV26404.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL +      +++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALRM-DIGSYNLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  +IP+I +TA   + D       G + YISKP SL      +K  +  
Sbjct: 64  MASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122


>gi|146301096|ref|YP_001195687.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
            UW101]
 gi|146155514|gb|ABQ06368.1| multi-sensor hybrid histidine kinase/response regulator
            [Flavobacterium johnsoniae UW101]
          Length = 1189

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
            KKV+IV+D+  N+      +E      +   +G +A+++  ++   DV+++D+ +  + G
Sbjct: 1067 KKVLIVDDDVRNIYSLTKALEVFKMTIITAFDGNDAIKVLSENPDTDVVLLDMMMPHMDG 1126

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+ + +   +PVIAVTA AM GD E+  K G   YI+KP+ +   +  ++ ++
Sbjct: 1127 YETAEKIRANPKFLNLPVIAVTAKAMTGDREKCIKAGASDYITKPVDVDQLLSLLRVWL 1185



 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED+    K         GY  +    G  AL     +KP  +++DI+L   SG E+
Sbjct: 800 ILIIEDDINFAKSLLAFTRQKGYKGIVAVRGDYALNFTLLYKPVGVLLDIELPVKSGWEV 859

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS---IFMETIKKYIG 121
            +++K  +E + IPV  +++  +   ++     G   ++ KP++          I+  I 
Sbjct: 860 LEELKNHAETKHIPVHIMSSHKL---KQESLLKGAVDFLDKPVAFDKIPDVFLRIEHIIN 916

Query: 122 E 122
           +
Sbjct: 917 K 917



 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 6/106 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIAL---QTRNGMEALELARQHKPDVIIMDIQLQEI 59
            +KV+I+EDN  + K     +ET    +    +  +G++AL    + + D +I+D+ + + 
Sbjct: 920  QKVLIIEDNPKHAKALAYFLETYNINSEIKSEVADGIQAL---GKTEVDCVILDMGIPDK 976

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
               +I   +K++  L+++PVI  T  ++   EE   K   ++ I K
Sbjct: 977  QAYQILDGVKKNPGLEKLPVIVFTGKSLSLKEEVKIKKYADSIIVK 1022


>gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 24  KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    P I +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 84  VLRALRTAHQS---PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139


>gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB]
 gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D     +     + + G+       G +AL L      D++++D+ L ++SG +
Sbjct: 2   KILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGHDLVVLDVGLPDMSGFD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      ++PV+ +TA + + D     + G + Y++KP S    +  I+  +  
Sbjct: 62  VCRALR---RYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAILRR 117


>gi|319640058|ref|ZP_07994785.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388336|gb|EFV69188.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1306

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++DN   + + +++     Y      +G +A +    H+ D+II D+ L +I+G E
Sbjct: 1056 TLLLIDDNAELLYIMKEMF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1114

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  +IK D     IPVI +TA     D       G + YI+KP  + +    +   I 
Sbjct: 1115 LCTRIKSDLRFNHIPVIILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1172


>gi|307731193|ref|YP_003908417.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585728|gb|ADN59126.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 247

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+ +   L    +E  G+      +GM      R  +P ++++DI + E+ 
Sbjct: 1   MNPSILVVDDDPVVRNLVSQYLEGRGFKVATLEHGMALQSKLRDERPALVVLDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++      +IPVI +TA A   D     + G + Y+ KP   S  +  I+  +
Sbjct: 61  GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|12484568|gb|AAG09631.1| CztR [Pseudomonas fluorescens]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +      +  +  SGY+     NG++ L LA QH  +++I+D+ L    G E
Sbjct: 2   RILVVEDEQKTADYLQQGLSESGYVVDCASNGIDGLHLAGQHAYELVILDVNLPGKDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ +   +   V+ +TA     D+ +    G + Y+ KP      +  ++  +  +
Sbjct: 62  VLEQLRRNGTQR---VMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRS 118


>gi|21230253|ref|NP_636170.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21111797|gb|AAM40094.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN    ++  + +E  G+      +G++   LA ++  DV+++D+ L  + G+E+
Sbjct: 22  VLVVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 82  CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 138


>gi|54307405|ref|YP_128425.1| osmolarity response regulator [Photobacterium profundum SS9]
 gi|46911825|emb|CAG18623.1| putative transcriptional regulator OmpR [Photobacterium profundum
           SS9]
          Length = 239

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +   ++P++ +TA   + D     + G + Y+ KP +    +  I+  +  
Sbjct: 66  ICRRLRNANN--KLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRR 122


>gi|329961774|ref|ZP_08299805.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328531515|gb|EGF58355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1327

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +K++IVEDN+         + ++ Y      NG EAL L ++  P++I+ DI + E+ G 
Sbjct: 1067 QKILIVEDNDELRAYLLQCLSST-YNVQVCSNGKEALVLVKEFWPELILSDIMMPEMGGD 1125

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+   IK D E   IPV+ +TA A +       + G + YI KP SL+I   +I   +  
Sbjct: 1126 ELCSAIKNDMETSHIPVLLLTALADEKHILEGLQIGADEYIVKPFSLNILKASIANLLAN 1185

Query: 122  EA 123
             A
Sbjct: 1186 RA 1187


>gi|313897646|ref|ZP_07831188.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           HGF2]
 gi|312957598|gb|EFR39224.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           HGF2]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++++ED+   ++     ++ +GY  ++ RNG+E + L     PD+I++D+ L +I 
Sbjct: 1   MHDKILLIEDDASIIRFLSLSLDKNGYKVIEARNGIEGISLFMSDNPDLILLDLGLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+  SE   +P++ V+A   + ++      G + Y++KP  ++  +  ++  +
Sbjct: 61  GSEVLRQIRSQSE---VPILVVSARGQEREKVEALDLGADDYVTKPFHINELLARVRVAL 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|310815788|ref|YP_003963752.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308754523|gb|ADO42452.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 243

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IV+D+     L    +   G+      +  E ++      PD++++D+ L + SG
Sbjct: 1   MNHILIVDDDPEIRSLLSRYLSGQGFRVTMAASRRECMQRLSHETPDLVVLDVLLPDGSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ +++   S    +PV+ +TA     D     + G + Y+ KP +    +  IK  + 
Sbjct: 61  LEMCREL--SSANPHVPVVLLTALKEDVDRIIGLELGADDYLGKPFNPRELVARIKAVLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVED     +  +  +E  G+ A    NG  A E   Q   D+I++D+ L  + G+E
Sbjct: 6   HVLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++    +  +P+I +TA     D       G + YI+KP ++   +  I+  +  
Sbjct: 66  ICRRVR---TVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARIRNALRR 121


>gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C]
 gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C]
          Length = 1828

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            +V+IV+D+  N+     ++E  G   L   NG E +E+  Q+    V++MDI + E+ G 
Sbjct: 1708 RVLIVDDDVRNVFALTSVLEQHGLAVLYAENGREGIEVLEQNDDVAVVLMDIMMPEMDGY 1767

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P+IA+TA AMKGD E+    G   Y++KP+     +  +++++ 
Sbjct: 1768 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVEPDYLLTVMEQHMR 1826


>gi|296447290|ref|ZP_06889218.1| response regulator receiver protein [Methylosinus trichosporium
           OB3b]
 gi|296255155|gb|EFH02254.1| response regulator receiver protein [Methylosinus trichosporium
           OB3b]
          Length = 123

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/122 (63%), Positives = 106/122 (86%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V+IVEDNELNMKLF DL+E +G+  LQT++G+EA+ LAR+H PD+I+MDIQL E+S
Sbjct: 1   MQKTVLIVEDNELNMKLFNDLLEANGHATLQTKSGVEAIALARRHSPDLILMDIQLPEVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+T+ +K+D EL+ IP+IA+TAFAMKGDEE+IR+GGCEAY+SKPIS++ F+ET+  ++
Sbjct: 61  GLEVTRWLKDDEELRSIPIIAITAFAMKGDEEKIRQGGCEAYLSKPISVARFLETVNAFL 120

Query: 121 GE 122
            +
Sbjct: 121 AD 122


>gi|225028286|ref|ZP_03717478.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353]
 gi|224954332|gb|EEG35541.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 9   EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68
           +DN    ++ + L+   GY+     NG++ALE+    + D+II+DI +  + G +  +++
Sbjct: 2   DDNPEIREIIQVLLGGEGYLVETAGNGVKALEMLENREYDLIILDIMMPGMDGYQTCRKM 61

Query: 69  KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +E+S     P++ ++A     D+      G + Y++KP S +  +   K  I  
Sbjct: 62  REES---NAPILFLSARTKDSDKTLGFSSGGDDYLAKPFSYNELISRAKALIRR 112


>gi|160884454|ref|ZP_02065457.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483]
 gi|237718085|ref|ZP_04548566.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260174656|ref|ZP_05761068.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293369752|ref|ZP_06616328.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|299145993|ref|ZP_07039061.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23]
 gi|315922919|ref|ZP_07919159.1| two-component system response regulator [Bacteroides sp. D2]
 gi|156110193|gb|EDO11938.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483]
 gi|229452506|gb|EEO58297.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292635174|gb|EFF53690.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298516484|gb|EFI40365.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23]
 gi|313696794|gb|EFS33629.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K    V++VED +    + +D +E + +I     +G E L L  +  PDV++ D+ + 
Sbjct: 1   MSKNKITVLLVEDEQTLAMIIKDTLEENDFIIHTANDGEEGLSLFFELHPDVLVADVMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ G E+ ++I++    ++ PV+ +TA +   D     + G   Y+ KP  +   +  IK
Sbjct: 61  KMDGFEMVRRIRQTD--KQTPVLFLTARSAINDVVEGFELGANDYLKKPFGIQELIIRIK 118

Query: 118 KYIGEA 123
             +G+A
Sbjct: 119 ALMGKA 124


>gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3]
 gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++      IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  ICRRLRQTGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123


>gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 242

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D +   KL    ++  GY  LQ  +G E LE+ ++    +I++DI + +I G+ 
Sbjct: 14  TILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIH 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E   + E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 74  MCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129


>gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++ +D++   +L    +E  G+  ++  +G EA     + + D+ ++DI +    G
Sbjct: 1   MIQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+TK+IKE     +IPV+ VTA     D+ +    G + Y+ KP      +  +K  + 
Sbjct: 61  WELTKEIKE---YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|293371358|ref|ZP_06617795.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|294810799|ref|ZP_06769445.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|315919426|ref|ZP_07915666.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292633718|gb|EFF52273.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|294441987|gb|EFG10808.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|313693301|gb|EFS30136.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1358

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VEDN+      ++ +E   Y  ++  +G E    A +  P++II DI + ++ G+
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ ++IK + +   IPVI +TA      +    + G ++Y+SKP +  + M  I+K I +
Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1224


>gi|210610549|ref|ZP_03288475.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787]
 gi|210152408|gb|EEA83414.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D    + + +   +T  Y  L   +G EAL+     KPD+I++DI +  + GL 
Sbjct: 6   KLLIVDDERGIVDMIQSYFQTQ-YDILTAYSGQEALKKV-ACKPDLILLDINMPGMDGLT 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +QI+E       P++ +TA     D+    + G + YI KP  L      I  ++  
Sbjct: 64  VCQQIREHIA---CPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRR 119


>gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
 gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
          Length = 230

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++ +  +  SG++     +G E L+ A  +  DVI++DI L +  
Sbjct: 1   MSKRILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++  +      ++ ++A   + D       G + Y++KP S    +  IK  I
Sbjct: 61  GFAVCKELRAQNI--STYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAII 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|307154354|ref|YP_003889738.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306984582|gb|ADN16463.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 355

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++    +   GY   +  +G +AL + +   P++I++D+++  + G E+
Sbjct: 12  ILIVDDIPENLEILFKSLRDQGYEVRRVLSGKQALMVVKAEPPELILLDVKMPNMDGYEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K +SE  EIPVI ++A     D+ +    G   YI+KP  L   +  I+  +
Sbjct: 72  CQKLKANSETAEIPVIFLSALNEVFDKVKAFTVGGVDYITKPFHLEEVLSRIETQL 127


>gi|298385015|ref|ZP_06994574.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298262159|gb|EFI05024.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1511

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+      R +  ++ Y  ++   GME    A ++ PD+II D+ + E  G+E+T
Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASEGMEGWSKALKYLPDIIISDVMMPEKDGIEMT 1294

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1295 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1349


>gi|284990061|ref|YP_003408615.1| response regulator receiver modulated diguanylate cyclase
           [Geodermatophilus obscurus DSM 43160]
 gi|284063306|gb|ADB74244.1| response regulator receiver modulated diguanylate cyclase
           [Geodermatophilus obscurus DSM 43160]
          Length = 767

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 60/111 (54%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+E+  +L R  +E++G   +   +G EAL+   +  PDV++ D+ +  + G  + 
Sbjct: 12  LVVDDDEMVAELVRAGLESAGLTVVTAADGHEALDRLAEAVPDVVVSDVNMPGMDGFALV 71

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +++ +   + +P++ +++ + + D     + G + Y+ KP  L   +  +
Sbjct: 72  SRLRAEPATRRVPLVFLSSRSQRDDVLTGLRLGADDYVRKPFDLDELVGRV 122


>gi|251790356|ref|YP_003005077.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247538977|gb|ACT07598.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 245

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I ED     ++ R  +  +G   L   +G +ALEL    KPD++++D+Q+  + G ++
Sbjct: 18  VLIAEDEPEIAEILRAYLTRNGLRTLHAADGRQALELHLSMKPDLVLLDVQMPLVDGWQV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              I+      + PVI +TA     D+    + G + Y+ KP + +  +  ++  +  A
Sbjct: 78  LSGIRLRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVQAVLRRA 133


>gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+I++D++    L +  +      A     G E +   +  +  ++I+DI +  + 
Sbjct: 1   MKHKVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++I+E      +PV+ +TA +    +    + G + Y++KP  +  F+  +   I
Sbjct: 61  GFQVLEKIRE---TNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|225848943|ref|YP_002729107.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643812|gb|ACN98862.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 219

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VEDN       ++++E +GYI     +  EAL   +    DVII+D+ L +I G  
Sbjct: 2   KVLLVEDNIGLNASLKEILELNGYIVDGAFDADEALNFLQNSFYDVIILDVMLPDIDGFT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I+E     + PVI +TA     D+ +  + G + YI+KP  +   +  IK     +
Sbjct: 62  LLKLIREKGI--KTPVIMLTAKDQLRDKVKGLELGADDYITKPFEVEELLARIKAVARRS 119


>gi|167762881|ref|ZP_02435008.1| hypothetical protein BACSTE_01245 [Bacteroides stercoris ATCC
           43183]
 gi|167699221|gb|EDS15800.1| hypothetical protein BACSTE_01245 [Bacteroides stercoris ATCC
           43183]
          Length = 375

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +      NG +ALE   + +PD++++D+ + ++SG E
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFAIATANNGRQALEQVDKERPDLLLLDVMMPDLSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + +++K + +  +IP+I +TA     D  +  + G   +ISKP +    +  +
Sbjct: 71  VAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQAGASDFISKPFNKEELIIRV 123


>gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++++D++    L R  +      A    +G + L + +++   +I++D+ +  + 
Sbjct: 1   MSYKILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  ++I++      +P++ +T+      + R  + G + Y++KP  +   +  +   I
Sbjct: 61  GFQTMEKIRQ---TSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +   +     ++  GY      NG   LE A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQDFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E   ++  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVARRVRE---VKSTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|188995632|ref|YP_001929884.1| putative DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas gingivalis ATCC 33277]
 gi|33411668|dbj|BAC81440.1| regulator of gingipain and black pigmentation [Porphyromonas
           gingivalis]
 gi|188595312|dbj|BAG34287.1| putative DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 961

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VEDN+    L   L+    Y  L   NG E + LA +H PD+II DI +  + G+E
Sbjct: 698 TILLVEDNKDI-NLLVKLLLCDRYNVLSAANGKEGIALATEHIPDIIITDIMMPIMDGIE 756

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +T ++K+   L  IP++A+TA + + D     K G  +Y+ KP S    +  I++ +
Sbjct: 757 MTIRMKQSPLLCHIPIVALTAKSTEQDRLEGIKSGVVSYLCKPFSPEELLMRIEQLL 813


>gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|29349519|ref|NP_813022.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341428|gb|AAO79216.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1511

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+      R +  ++ Y  ++   GME    A ++ PD+II D+ + E  G+E+T
Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASEGMEGWSKALKYLPDIIISDVMMPEKDGIEMT 1294

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP+I +TA      +    + G + YI+KP S +     ++  +
Sbjct: 1295 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1349


>gi|22450197|dbj|BAC10587.1| sensory transduction histidine kinase/response regulator
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 258

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 17/135 (12%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------------QHKPDVII 51
           V++ EDN+LN +     ++  GY      +G EAL+  R             +   DV++
Sbjct: 105 VLLAEDNDLNREFLSFFLQERGYEVHLAIDGQEALDRLRGGCTPDSGIGGMQRPPFDVVL 164

Query: 52  MDIQLQEISGLEITKQIKEDSELQ----EIPVIAVTAFAMKGDEERIRKGGCEAYISKPI 107
           MD+Q+  +SGLE T++I+E +       ++PVIA+TA AM+GD +R    G + +++KP+
Sbjct: 165 MDVQMPVVSGLEATRRIREAAAQGAAWADVPVIALTAHAMQGDRDRFLAEGMDDFVAKPV 224

Query: 108 SLSIFMETIKKYIGE 122
           +       I++ +  
Sbjct: 225 NREALFAAIERQVAR 239


>gi|27378817|ref|NP_770346.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351966|dbj|BAC48971.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 273

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED++    L    +  + +      NG E      Q++ D+I++D+ L    GL +
Sbjct: 42  ILIVEDDQETRNLVARYLRENSFNVGMAANGREMDRYISQNRVDLIVLDLMLPGEDGLSL 101

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+     P+I +TA     D     + G + Y+ KP +    +  I   +  
Sbjct: 102 CRRLRVDT---TTPIIILTAKGDDVDRILGLEMGADDYLPKPFNPRELLARINAVLRR 156


>gi|315647309|ref|ZP_07900422.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277511|gb|EFU40840.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D++  ++L RD +E   +  +   +  +A ++ +Q     I++DI +   +G E
Sbjct: 6   TVLVVDDDQSIVELLRDFLENDNFHVMTAGDTEQAWDMFKQQPVHCIVLDIMMPGQNGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+ +S    +P++ ++A +   D+ R    G + YI K  S    +  +K  +  +
Sbjct: 66  LCRRIRGES---SVPILFLSARSHDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRS 122


>gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML+K++IV+D +    L    ++       +  +G EAL        D+ I+DI L +IS
Sbjct: 1   MLEKILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I + I+        PVI +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLSICQSIRSKEYTY--PVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1476

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +  + +    G  AYI+KP S    +  I + + E
Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335


>gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 268

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   ++    +  +G+   Q   G +A++  R+  PDV+++D+ L E+ GLE
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 101

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+      +  ++ +TA   + D+      G + YI+KP S+   +  +   +  
Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157


>gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 572

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++ EDN  N KL   +++  G  A    NG+EAL L ++   D+I+MD Q+ E+ G 
Sbjct: 450 QKILVAEDNVGNQKLILGMLKKIGLHADTANNGIEALNLFQKGGYDLILMDCQMPEMDGF 509

Query: 63  EITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T +I++  +      P+IA+TA +++G  ER  + G + Y+SKP+ +     T+ K+
Sbjct: 510 ETTAEIRKLEKKTGTHTPIIALTALSLQGARERCLEVGMDDYLSKPLEIKPLAATLSKW 568


>gi|254421727|ref|ZP_05035445.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189216|gb|EDX84180.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 381

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 64/113 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L  D +    Y   +  +G  A+++A+   PD+I++DI++ ++ G E+
Sbjct: 13  ILIVDDQPENLQLLLDTLSRQSYELRRVLSGQLAIQVAQFDPPDLILLDIRMPDMDGYEV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            +Q+K +   ++IPVI ++A     D+ +    G   Y+SKP  +   +  ++
Sbjct: 73  CRQLKTNKRTRDIPVIFLSALDDPVDKVKAFDVGGADYVSKPFQVPEVLARVR 125


>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
            DSM 8797]
 gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
            DSM 8797]
          Length = 1362

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 2/119 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++ ED+ +N KL   L++  G+      NG +A+   +  + D+I+MD+Q+ E+ GLE
Sbjct: 1082 KILLAEDSLVNQKLALALLKPQGHEIAVVLNGSDAVNERKNREFDLILMDVQMPEMDGLE 1141

Query: 64   ITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+QI+  E    + +P+IA+TA AMKGD ER  + G + Y+SKP+ +     TI++ +
Sbjct: 1142 ATRQIREYEQETGEHVPIIAMTAHAMKGDRERCLEAGMDGYVSKPVRVRELFSTIEECL 1200



 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
            +V+IV+DN  N ++  +++ +          G +AL++       +H  D++++D  +  
Sbjct: 936  RVLIVDDNLTNCQILEEMLGSWNMQTQSINRGSDALDVMHASQQSKHPFDLVLVDANMPV 995

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            + G  + K IK+DS L    ++ +T+   +G+  R ++ G  A++ KP+  S    +I +
Sbjct: 996  MDGFSVAKAIKQDSTLGSAVIMMITSSDRQGEISRCKELGIAAHLIKPLKQSELFNSIAE 1055

Query: 119  YIG 121
             +G
Sbjct: 1056 TLG 1058


>gi|126698058|ref|YP_001086955.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile 630]
 gi|254974096|ref|ZP_05270568.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-66c26]
 gi|255091495|ref|ZP_05320973.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile CIP 107932]
 gi|255099603|ref|ZP_05328580.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-63q42]
 gi|255313223|ref|ZP_05354806.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-76w55]
 gi|255515913|ref|ZP_05383589.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-97b34]
 gi|255649007|ref|ZP_05395909.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-37x79]
 gi|306519126|ref|ZP_07405473.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-32g58]
 gi|115249495|emb|CAJ67310.1| Two-component response regulator [Clostridium difficile]
          Length = 230

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D    + L  D ++  G+  L   +G   +EL++Q  PD+II+DI + +++G
Sbjct: 1   MSKILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQE-PDLIILDIMMPKMNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I++D      P+I ++A   + D+ +    G + Y++KP  L   M  I+  + 
Sbjct: 60  FEVCQAIRDDVL---CPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|313905958|ref|ZP_07839313.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469218|gb|EFR64565.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++VED+     L    +    Y  L   NG  A+  A  H PDVI +D+ L ++
Sbjct: 1   MSKASILVVEDDPPVRNLITTTLGMHQYEYLVAGNGQTAIMQAASHNPDVIFLDLGLPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+++ ++++      EIP+I ++A + + D+      G + Y++KP S+   +  ++  
Sbjct: 61  DGVDVIRKVR---TWTEIPIIVISARSEEADKIEALDAGADDYLTKPFSVEELLARLRVS 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|218246197|ref|YP_002371568.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218166675|gb|ACK65412.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 715

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 61/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IV+D   N++L RD ++  GY       GM AL  A+    D+I++DI+L +  G EI 
Sbjct: 10  LIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVTDLILLDIKLPDYDGYEIC 69

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++K D +   IPVI ++A     D+ +    G   YI+KP  +   +  +  ++
Sbjct: 70  RRLKADEQTAHIPVIFLSALNETFDKVQGFTVGGADYITKPFQIEEVLARVATHL 124


>gi|192361000|ref|YP_001982278.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
 gi|190687165|gb|ACE84843.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D++   +L  + +   G+      +G +A+EL  Q    +I++D+ L   SG
Sbjct: 1   MLKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K +++ S+    PVI +TA     D     + G + Y++KP      +  I+  + 
Sbjct: 61  FDVLKILRQHSQT---PVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I GL+
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D +         ++   Y   +  NG+EALE+ R+ +  ++++DI +  + G
Sbjct: 1   MYNILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEEIHLVLIDIMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T +I+E      +P+I ++A +   D+      G + YI+KP +    +  +   + 
Sbjct: 61  TKTTIKIRE---TSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
 gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I+ED        +  +  +GY+      G + L LARQ   D++I+D+ L E+ G  
Sbjct: 2   RLLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNLPELDGWG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +S  +   ++ +TA     D  +    G + Y+ KP      +  I+  +  
Sbjct: 62  VLQRLRAESSTR---IMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR 117


>gi|66769754|ref|YP_244516.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992968|ref|YP_001904978.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66575086|gb|AAY50496.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734728|emb|CAP52938.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN    ++  + +E  G+      +G++   LA ++  DV+++D+ L  + G+E+
Sbjct: 22  VLVVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 82  CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 138


>gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
 gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
          Length = 230

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D +  + L +D +   GY  L   NG + +    + +PD+I++DI + E+ G
Sbjct: 1   MSKILIIDDEKELVALLQDELTERGYQVLAAHNGADGVT-LSKKQPDLIVLDIMMPEMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+++      P++ ++A   + D+ R    G + YISKP  L   +  I   + 
Sbjct: 60  FEVCRKIRDEVL---CPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
 gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
          Length = 1092

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN +N ++   ++  SG+      +G  A+E  + H  D+I MDIQ+  + G+  
Sbjct: 844 ILIVDDNTINRQVASQILMKSGFKTDLAFSGPAAIEKVKNHDYDLIFMDIQMPVMDGVTA 903

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++IK+  + +  P++A+TA++MK D +R    G + Y++KPI  S+ +E I++ +
Sbjct: 904 TREIKKLPK-KIPPIVAMTAYSMKEDRQRFLDLGMDDYLAKPIVSSLLLEVIQQNL 958


>gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ +  + G E
Sbjct: 2   RLLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|186470431|ref|YP_001861749.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184196740|gb|ACC74703.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 2010

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            +K +IV+D+  N+     ++E  G   +   NG +A+ L     + D+++MDI + E+ G
Sbjct: 1890 RKALIVDDDMRNIFALATVLEDHGMRHVWADNGRDAIRLVETDSEIDIVLMDIMMPEMDG 1949

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            L  T +I++    + +P+IAVTA AMKGD ER  + G   Y+SKP++    +  +  ++ 
Sbjct: 1950 LVTTSEIRKLPVGRTLPIIAVTAKAMKGDRERCIEAGAWDYLSKPVNREDLLAVLHAWLH 2009

Query: 122  E 122
             
Sbjct: 2010 R 2010



 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 4    KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+ IVE++        D     G+  L T  G  AL LA Q KPDVI +D+ L ++ G 
Sbjct: 1625 RVLMIVENDLAFAHFLLDAAREQGFKGLVTPLGAPALTLAEQFKPDVITLDLFLPDMDGW 1684

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
             +  ++K D   + IPV  ++        ER  K G  A+++KPI     ++
Sbjct: 1685 RVLGRLKNDMATRHIPVCVIS---TDESRERALKAGAFAFLTKPIQAREILD 1733


>gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 220

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED+    +     +   GY     ++G  AL        D+ ++D+ L  + GL+
Sbjct: 2   RLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       +PV+ +TA     D       G + Y+ KP  L+     ++  +  +
Sbjct: 62  VLRRLR--DSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRS 119


>gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
 gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS 60
           + +++IV+D++    L  D +E  G+  +   +G EALE   +  +  ++I+DI + ++ 
Sbjct: 1   MDRILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ +++++  +    P+I V+A +   D     + G + YI KP  +   +  +K ++
Sbjct: 61  GLELCRRVRDQLKA---PIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
 gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
          Length = 1072

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 5/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
           KV++ EDNE+N ++  +L+E +G +     NG EALE        +   D++ MD+Q+  
Sbjct: 696 KVLLTEDNEINQQIAVELMEGNGLLVTVANNGQEALEHLEAMAKGESHFDIVFMDLQMPV 755

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E + +I+ +S    IP+IA+TA AM  + ER    G   +ISKPI   I   TI+K
Sbjct: 756 MDGYEASHRIRANSSYDTIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPEILFNTIRK 815

Query: 119 YIGE 122
           +   
Sbjct: 816 WCPR 819



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 63/125 (50%), Gaps = 6/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           ++++V+DNE  +++ ++++ T         +G +A++  R+      K D+I MD  + E
Sbjct: 546 RILVVDDNEHALEIMQEMLSTLPGKVALANSGQQAVDCIRKASEQREKFDLIFMDWNMPE 605

Query: 59  ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + G+E ++ I+E    +  P ++ VTA+  +   +         ++SKP+  S   + + 
Sbjct: 606 MDGIETSRLIRESFASEYQPQIVIVTAYDKEDVLDATNDLDIAGFLSKPVGQSYLFDLLV 665

Query: 118 KYIGE 122
           +  G 
Sbjct: 666 ELFGR 670


>gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074]
 gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1827

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G
Sbjct: 1705 QKVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1764

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I+   +   +P++A+TA AMKGD E+  + G   Y++KP+     +  ++ ++ 
Sbjct: 1765 YATTSAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLAVMEGWMS 1824

Query: 122  E 122
            +
Sbjct: 1825 Q 1825


>gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 223

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED +   +     +  SGY      +G E L L  QH  D++I+D+ L E++G ++
Sbjct: 3   ILIIEDEQKIARYLAKGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVMLPELNGWQV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + +++     E+PV+ +TA     D  +  + G + Y+ KP S    +  +K  +  +
Sbjct: 63  IQTLRQ---FSEVPVLFLTARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRS 118


>gi|239907909|ref|YP_002954650.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797775|dbj|BAH76764.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1126

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN  N ++   ++   G        G  A+++      D++ MD+ + ++ G E
Sbjct: 867 RILVVDDNTTNRQVATGILTKLGLSVETVSGGAAAIQVLELINFDIVFMDVLMPDMDGYE 926

Query: 64  ITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK+I+          IP+IA+TA AM GD ++    G + YISKPI L    + + K++
Sbjct: 927 ATKRIRDPLSKVINHNIPIIAMTANAMTGDRKKCLDAGMDDYISKPIMLKNLTQVLAKWL 986



 Score = 94.0 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58
           +V+IV+DN  N  +   L+ T G       +   AL+         +   + ++D ++  
Sbjct: 717 RVLIVDDNATNRDILYSLMTTWGMRPSTVIDAPSALQALYKALNENNPFIIAVIDSKMPG 776

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G  + + IK D  L    ++ +T+     + E  +K G  AY +KPI  S F + +  
Sbjct: 777 MNGEALGRAIKADPRLSRTKMVILTSLGQNENVEIYKKVGFSAYANKPIRQSDFFKILSS 836

Query: 119 YI 120
            I
Sbjct: 837 VI 838


>gi|146305444|ref|YP_001185909.1| response regulator receiver protein [Pseudomonas mendocina ymp]
 gi|145573645|gb|ABP83177.1| response regulator receiver protein [Pseudomonas mendocina ymp]
          Length = 121

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 70/119 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+   M     ++E  G+  L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+Q+ +D+E   IPVI VT    + D+   ++ G + Y++KPI     ++T+   +
Sbjct: 61  FQATRQLTKDAETSHIPVIIVTTKDQETDKVWGKRQGAKDYLTKPIDEDTLLKTLNAVL 119


>gi|51209895|ref|YP_063559.1| tctD transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
 gi|50657649|gb|AAT79634.1| tctD transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
          Length = 214

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 61/119 (51%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++++D+   +      + + G+    T NG + L+     KPD+II DI + +IS
Sbjct: 1   MKKKILLIDDDINLLNSMASYLISEGFTIDITTNGDKVLKNLNIIKPDLIITDIMMPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G ++ KQI+ + +    PVI +TA  M  D     + GC AYI+KP      +  I   
Sbjct: 61  GYDLIKQIRSNEKWCHTPVIFLTAKGMTHDRILGYELGCNAYIAKPFYPEELISIINNI 119


>gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
 gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
          Length = 1072

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 5/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
           KV++ EDNE+N ++  +L+E +G +     NG EALE        +   D++ MD+Q+  
Sbjct: 696 KVLLTEDNEINQQIAVELMEGNGLLVTVANNGQEALEHLEAMEKGESHFDIVFMDLQMPV 755

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E + +I+ +S    IP+IA+TA AM  + ER    G   +ISKPI   I   TI+K
Sbjct: 756 MDGYEASHRIRANSSYDTIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPEILFNTIRK 815

Query: 119 YIGE 122
           +   
Sbjct: 816 WCPR 819



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 63/125 (50%), Gaps = 6/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           ++++V+DNE  +++ ++++ T         +G +A++  R+      K D+I MD  + E
Sbjct: 546 RILVVDDNEHALEIMQEMLSTLPGKVALANSGQQAVDCIRKASEQREKFDLIFMDWNMPE 605

Query: 59  ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + G+E ++ I+E    +  P ++ VTA+  +   +         ++SKP+  S   + + 
Sbjct: 606 MDGIETSRLIRESFASEYQPQIVIVTAYDKEDVLDATNDLDIAGFLSKPVGQSYLFDLLV 665

Query: 118 KYIGE 122
           +  G 
Sbjct: 666 ELFGR 670


>gi|299146431|ref|ZP_07039499.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one-component system) [Bacteroides sp.
            3_1_23]
 gi|298516922|gb|EFI40803.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one-component system) [Bacteroides sp.
            3_1_23]
          Length = 1360

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VEDN+      ++ +E   Y  ++  +G E    A +  P++II DI + ++ G+
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ ++IK + +   IPVI +TA      +    + G ++Y+SKP +  + M  I+K I +
Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1226


>gi|270295880|ref|ZP_06202080.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D20]
 gi|270273284|gb|EFA19146.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D20]
          Length = 1354

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +  R  +    +  L   +G     LA++  P++I+ DI +  + G+++ 
Sbjct: 1105 LVVEDNQDIREYIRQSLGDD-FDILTAEDGSRGWTLAQERIPNIIVSDIMMPVMDGIQLC 1163

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K+D     IPVI +TA     D+E     G ++Y++KP S  +    I   +
Sbjct: 1164 RLVKDDIRTSHIPVILLTAKDSLHDKEEGYTAGADSYLTKPFSAKLLHSRINNLL 1218


>gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 919

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN++N    +  +  +G       +G++ALEL  Q   D+++MDIQ+ E+ G E
Sbjct: 678 RVLLAEDNQVNRLFLKHFLAEAGCQVRLAGSGLQALELLCQEPADLVLMDIQMPEMDGAE 737

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+E       + +PV+A+TA++MKGD ER    G + Y+SKP+ +      +++ +
Sbjct: 738 ATRRIREGEAGDAARAMPVVALTAYSMKGDRERFLSVGLDDYVSKPVDVDELFMVMRRVL 797

Query: 121 GE 122
             
Sbjct: 798 AR 799


>gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 240

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     ++P+I +TA   + D     + G + Y+ KP +    +   K  +  
Sbjct: 67  ICRRLRQQEN--DMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123


>gi|126654707|ref|ZP_01726241.1| CheY subfamily protein [Cyanothece sp. CCY0110]
 gi|126623442|gb|EAZ94146.1| CheY subfamily protein [Cyanothece sp. CCY0110]
          Length = 122

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+    +L   L+  +G+      +G EALE  +   PD+II+D+ + +++G
Sbjct: 1   MTTILLADDSTAQRELIAGLLIDNGFSVTTAIDGAEALEKLKSLAPDLIILDVVMPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  + IK D + + IPVI  +    + D     K G +AYI KP      + T+K+ + 
Sbjct: 61  YQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIIKPFPHEELLGTVKQLLR 120

Query: 122 EA 123
            +
Sbjct: 121 NS 122


>gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
 gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM
           13855]
 gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
          Length = 247

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED        +  +   GY       G   L+ ARQ   D++++DI+L ++SGLE
Sbjct: 6   HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      E+P++ +TA     D  R  + G + Y+ KP +    +  I+  +  
Sbjct: 66  VCERLR--LHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRR 122


>gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I+ED E         ++  GY      +G + LE+A +   D+I++D+ L  ++G
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVALETNYDLILLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++     +  P+I +TA     D       G + Y+ KP ++   +  ++    
Sbjct: 61  LEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1101

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 74/122 (60%), Gaps = 4/122 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K++++V+D+  N++L R  ++   Y      +G EA++  RQ    D+I+MD+Q+  + G
Sbjct: 979  KRILVVDDSTDNLELIRLFLKRQPYTLEFAESGQEAVDKVRQRPSFDLILMDVQMPGMDG 1038

Query: 62   LEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             + T+ I+   + ++L  IP+IA+TA AM    E   + GC+ +++KPI   + ++ +++
Sbjct: 1039 YQATRTIRLWEKANDLASIPIIALTAHAMPEHRENSLRAGCQEHLTKPIHKLVLIQELQR 1098

Query: 119  YI 120
            ++
Sbjct: 1099 FL 1100


>gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I++D+   + + + L+E  GY      NG   LE  ++   ++I++D+ L +I+
Sbjct: 1   MACKILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSYNLILLDLNLPDIA 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K I+++SEL   P++ ++A     D+    + G + YI+KP      +  IK  +
Sbjct: 61  GEQLCKAIRKNSEL---PILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +M+VED     ++    I+ +GY       G  A+E     +P +I++D+ L  + G
Sbjct: 1   MRTIMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQLTTVQPALILLDVMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++  S     PVI +TA    GD       G + YI KP      +  I+  + 
Sbjct: 61  WEVLREVRNRS---TCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|164688486|ref|ZP_02212514.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
           16795]
 gi|164602899|gb|EDQ96364.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
           16795]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++EDN+   KL    ++ +GY   +  +G   L++      D+II DI +  + G E 
Sbjct: 4   ILVIEDNKNMRKLICATLKQNGYSTFEAEDGEVGLDVLDTTHIDLIICDIMMPNMDGYEF 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           T+ ++      E P+I VTA     D+++    G + Y+ KPI     +  I   +  +
Sbjct: 64  TETLR--DGHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPIDFEELILRIGAILRRS 120


>gi|71907731|ref|YP_285318.1| PAS [Dechloromonas aromatica RCB]
 gi|71847352|gb|AAZ46848.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 680

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61
           ++++VED  +N  + R+L+E +  +     NG +A+E+A       D+I+MD+Q+  + G
Sbjct: 560 RILLVEDEPINQMIARELLEDASLVVHVADNGQQAVEMALSTPSPYDLILMDVQMPVLDG 619

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +     I+E       P+IA+TA A   D  +    G   ++SKP+   +  E I K++ 
Sbjct: 620 IAAAHCIREKRPDLHTPIIALTANAFSDDRRKCLAAGMNDFVSKPVDPDVLFEIIWKWLS 679

Query: 122 E 122
           +
Sbjct: 680 K 680



 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQEIS 60
           ++V+D  L   +   L++  G   +   +G EAL   +      H   +  +D+ + +++
Sbjct: 412 LVVDDLPLTQAVHSQLLKRIGLNPIAVMSGQEALTAVQIADRELHPFGIAFIDLHMPDLN 471

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+  +I+      +   + VTA  ++   +  +  G  A + KP SL+   E + + +
Sbjct: 472 GLEVIAKIRALPLRYQPHCVLVTAAGIQSIVDEAKSVGYAAVLQKPASLAGLREIVSQLL 531


>gi|332992815|gb|AEF02870.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Alteromonas sp. SN2]
          Length = 331

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 71/125 (56%), Gaps = 6/125 (4%)

Query: 1   MLKKV-----MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55
           ML+ +     ++V+D  +N+++ + L+  + Y  +  +NG EA+ L  Q +P +I++DI 
Sbjct: 1   MLRTIEKPTLLLVDDEPVNLRVLKQLL-AADYQLIFAKNGEEAIRLTSQRQPQLILLDIM 59

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           +  ++G E+ + +K   + + IPVI VTA   + DE    + G   YI+KPIS  +    
Sbjct: 60  MPGLTGFEVCRILKGQDDTRHIPVIFVTALNDEHDEAEGFEVGAVDYITKPISPPVVKAR 119

Query: 116 IKKYI 120
           +K ++
Sbjct: 120 VKTHL 124


>gi|328951840|ref|YP_004369174.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109]
 gi|328452164|gb|AEB07993.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109]
          Length = 357

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+DN +N  +    +E  G+ A    NG +AL +  +   D+I++DI++ E++G ++
Sbjct: 17  ILVVDDNRMNRLMLARGLEKQGHQAAFAENGRQALAMLAEQDFDLILLDIEMPEMNGYQV 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +  +   +++PVI ++A        R  + G E Y++KP +  +    +   +
Sbjct: 77  LDHLAANVRWRDLPVIMISAVDEIDSVVRCIELGAEDYLTKPFNPVLLKARVDASL 132


>gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5]
 gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED E   ++ +  +E  GY      NG E LE A +    ++++D+ L  +SGLE
Sbjct: 5   HILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVMLPGLSGLE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++    Q+ PVI +TA     D+      G   Y++KP  +   +  I+  + +
Sbjct: 65  VLRRLRKTD--QQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ 121


>gi|313895961|ref|ZP_07829515.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975386|gb|EFR40847.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED+    +L RD +E SG+    + +G E   +A      ++++D+ L    G
Sbjct: 1   MTKILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I + ++++    +IP++ V+A     D+ R    G + YI KP S S     +K +I 
Sbjct: 61  FAICRAVRKEL---DIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHIT 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|309792127|ref|ZP_07686599.1| OmpR subfamily [Oscillochloris trichoides DG6]
 gi|308225668|gb|EFO79424.1| OmpR subfamily [Oscillochloris trichoides DG6]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 54/107 (50%)

Query: 17  LFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE 76
           +    +   G+      +G EAL++A++ +PD+II+D+ + ++ G E+   +   S L +
Sbjct: 16  VVGRSLYDDGHTVRMAHDGEEALDMAQRQRPDLIILDVAMPKMDGFELCHTLHTRSNLAD 75

Query: 77  IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +PV+ +T      D  R  + G + Y++KP  L      IK  +  +
Sbjct: 76  VPVLFLTGRNTIEDRLRGFEEGADDYLTKPFDLRELKARIKALLRRS 122


>gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED+   +   R  +E  G+      +  E  +   Q +PD++++D+ L + +G
Sbjct: 1   MQRLLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGLPDGTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +QI+ ++     P++ +TA   +         G + YI+KP  L   +  ++  + 
Sbjct: 61  FDLCRQIRVENGT---PILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
          Length = 239

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|258514837|ref|YP_003191059.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778542|gb|ACV62436.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 314

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 74/124 (59%), Gaps = 3/124 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IV+D  +++K+  +L+    Y  L   +G  A+E+A +++PD+I+MD+ +  + G
Sbjct: 1   MNKVLIVDDVPVSIKVLGELL-KEHYEILVATSGSRAIEVALKNQPDLILMDVVMPGMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-- 119
           LE  +++KE++   EIPVI +TA +   D  +  + G + Y+ KP +    +  +K +  
Sbjct: 60  LETCRRLKENTLTAEIPVIFLTAMSESSDVIKGFEVGGQDYVVKPFNKIEVIARVKNHME 119

Query: 120 IGEA 123
           + ++
Sbjct: 120 LRKS 123


>gi|119468143|ref|ZP_01611269.1| sensory box/GGDEF domain/EAL domain protein [Alteromonadales
           bacterium TW-7]
 gi|119448136|gb|EAW29400.1| sensory box/GGDEF domain/EAL domain protein [Alteromonadales
           bacterium TW-7]
          Length = 735

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ +  + + T  Y    + +G +AL      +PD+I++DI +  ++G E+
Sbjct: 22  ILIVDDEPSNLHILVEGLSTD-YDVRISTSGEQALTFIESTRPDLILLDIMMPGMNGYEV 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +K   + + IP+I VTA   +  EE+    G   YI KP  L++    I+ +I
Sbjct: 81  CTILKGKPKTKGIPIIFVTALTEEESEEKGFAMGAIDYIHKPYKLALVRARIRTHI 136


>gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120]
          Length = 290

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|254720404|ref|ZP_05182215.1| response regulator PleD [Brucella sp. 83/13]
 gi|265985422|ref|ZP_06098157.1| response regulator receiver modulated diguanylate cyclase [Brucella
           sp. 83/13]
 gi|306839019|ref|ZP_07471840.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|264664014|gb|EEZ34275.1| response regulator receiver modulated diguanylate cyclase [Brucella
           sp. 83/13]
 gi|306405925|gb|EFM62183.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 461

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI +T      D+ R  + G E ++SKP++    +  +K   
Sbjct: 61  GFEVCRRLKANPHTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+++EL     R ++    Y          AL  A +   D II+         L
Sbjct: 160 ARILVVDEDELATARLRHIL-DENYRVDVASGAETALIRAIETDYDTIIVSASFTYYDPL 218

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++  Q++     + IP+I +          R  + G   Y+ +P+        ++  I  
Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278


>gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     +   GY  ++  NG   LE+A + + D+II+D+ L EI+G
Sbjct: 1   MIKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++I+    + E+P+I +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRIR---RVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|119897782|ref|YP_932995.1| polar differentiation response regulator [Azoarcus sp. BH72]
 gi|119670195|emb|CAL94108.1| probable polar differentiation response regulator [Azoarcus sp.
           BH72]
          Length = 131

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 80/121 (66%), Gaps = 1/121 (0%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M+  ++++ EDN  N++L R L+  +G+  + T +G+ ALE A++  PD+II D+Q+  +
Sbjct: 1   MMGARILVAEDNLANLELVRYLLSRAGHEVITTADGLAALEEAQRAVPDLIISDLQMPRM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++  +++ D  L+ +PVIA+TAF+M GD  ++ + G ++Y+SKP+    F+  ++ +
Sbjct: 61  DGYQLLARLRGDPALRAVPVIALTAFSMPGDRVKVMQAGFDSYMSKPLVPETFVAQVEAW 120

Query: 120 I 120
           +
Sbjct: 121 L 121


>gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1118

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN  N  +   ++   G +     NG EA+E+      D++ MD ++ E+ G E
Sbjct: 827 RVLLAEDNATNQIVGAMILRNLGCLVDVATNGREAMEMVDAFLYDMVFMDCEMPEMDGFE 886

Query: 64  ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T  ++   + +  +PVIAVTA AM+GD ER  + G + YISKP+ L  F   +K+++
Sbjct: 887 ATAALRRRPDSKSRLPVIAVTAQAMQGDRERCLRAGMDDYISKPVKLEDFAAALKRWM 944



 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           +V+IV+DN  N  + ++ + +         +G EAL              + I+D Q+ +
Sbjct: 668 RVLIVDDNAANRLVLQEQLRSWRMRIGSCPSGAEALRALHTSHASGDPYRIAILDHQMPD 727

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETI 116
           + G  + + IK D  L+ I ++ +++   +GD  ER++K G  AY+ KP   S  + T+
Sbjct: 728 MDGEMLGRTIKADPLLRSIHLVMLSSLGQEGDLRERLQKIGFAAYLVKPARQSELLSTL 786


>gi|86136783|ref|ZP_01055361.1| response regulator [Roseobacter sp. MED193]
 gi|85826107|gb|EAQ46304.1| response regulator [Roseobacter sp. MED193]
          Length = 410

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 58/115 (50%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+ L  ++    ++  G+  ++  +G  A+E+ R+  PD+I+ D  +  ++GLE
Sbjct: 7   RVLVVDDSRLQRRILVASLQKWGFDVVEAESGEAAMEICRKDPPDLILSDWMMPGMNGLE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             +  +E S       I +T+ + K +       G + +++KP+S       I  
Sbjct: 67  FCQAFREQSRDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISA 121


>gi|330811069|ref|YP_004355531.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379177|gb|AEA70527.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 633

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 66/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VEDN +N  +   ++ + G+      +G +A+  A     + I+MD +L  I G 
Sbjct: 515 RNVLLVEDNPVNQTVVEAMLRSLGFTVSIATDGAQAVRSAESLIFEAILMDCRLPIIDGY 574

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+QI++     E+P+IA+TA A++GD E     G   Y++KP   +   + +++++
Sbjct: 575 EATRQIRQLPGCGEVPIIALTANALQGDREACLAAGMNDYLAKPFKRNDLQQILQRWV 632


>gi|303243632|ref|ZP_07329973.1| response regulator receiver protein [Methanothermococcus
           okinawensis IH1]
 gi|302485874|gb|EFL48797.1| response regulator receiver protein [Methanothermococcus
           okinawensis IH1]
          Length = 124

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDNE  + L + ++E + +  L   +G EA++L  ++KPD++++DI +  +SG
Sbjct: 1   MAKILVVEDNEDILNLVKIILEVNNHDVLTASDGHEAIKLM-ENKPDLVLLDIMMPGMSG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   I+   + +  PVIA+TA A K D E   K   + YI KP      +  I K +G
Sbjct: 60  WDVLDIIRSRDKWKNTPVIALTALAQKKDIETGVKKHVDGYIVKPFEKKELLNIINKVLG 119

Query: 122 E 122
           E
Sbjct: 120 E 120


>gi|298374088|ref|ZP_06984046.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
 gi|298268456|gb|EFI10111.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
          Length = 1359

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN    +  +  +    Y  L   +G +A +L  +  PD++I D+ +    G+ 
Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1170

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK D     IPVI +TA + K  +    + G + YISKP ++ + +  ++  I
Sbjct: 1171 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1227


>gi|255013019|ref|ZP_05285145.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. 2_1_7]
          Length = 1359

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN    +  +  +    Y  L   +G +A +L  +  PD++I D+ +    G+ 
Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1170

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK D     IPVI +TA + K  +    + G + YISKP ++ + +  ++  I
Sbjct: 1171 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1227


>gi|254712420|ref|ZP_05174231.1| response regulator PleD [Brucella ceti M644/93/1]
 gi|254715492|ref|ZP_05177303.1| response regulator PleD [Brucella ceti M13/05/1]
 gi|261217227|ref|ZP_05931508.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M13/05/1]
 gi|261320098|ref|ZP_05959295.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M644/93/1]
 gi|260922316|gb|EEX88884.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M13/05/1]
 gi|261292788|gb|EEX96284.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M644/93/1]
          Length = 462

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI +T      D+ R  + G E ++SKP++    +  +K   
Sbjct: 61  GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 3   KKVMIVE-DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++++V+ D        R ++    Y      +   AL  A +   D II+         
Sbjct: 160 ARILVVDEDELAAAARLRHIL-DENYWVDVASDAETALIRAIETDYDTIIVSASFTYYDP 218

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++  Q++     + IP+I +          R  + G   Y+ +P+        ++  I 
Sbjct: 219 LKLCTQLRTIQRTRLIPIILMVWEDEGALVARALELGVNDYLMRPLEKIELFARLRTQIK 278

Query: 122 E 122
            
Sbjct: 279 R 279


>gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 220

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED      + +  +   GY   +  +G  A++L  +   D++I+DI L +  G
Sbjct: 1   MKKILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++IK+      +PV+ ++A     DE    + G + YI+KP +  I +  IK  I
Sbjct: 61  WSVLREIKK---YSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLI 116


>gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
            ES-2]
 gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
            ES-2]
          Length = 1407

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 69/118 (58%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++VEDNE N ++  +L++          NG EAL L  ++  D+++MD+Q+  + G+
Sbjct: 1074 ARILLVEDNEFNQQIAMELLQQMHLAVDLAENGAEALNLLEKNNYDLVLMDMQMPVMDGI 1133

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T +++  +   E+PV+A+TA  ++ D +R    G   ++SKPI   +  +T+ K+I
Sbjct: 1134 SATLELRRQARFAELPVVAMTANVLQADRQRCLDAGMNDFLSKPIEPELLWQTLLKWI 1191



 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58
             V++V+DN+   ++  ++++   +      + +EA+        ++    ++ MD  +  
Sbjct: 927  HVLVVDDNDNARQVMNEMLDGMSFSVDVANSAIEAITAIELADRQRDPYKLVFMDWHMPT 986

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            ++G++   +I+         ++ VTA+            G    + KP++ S   +T  +
Sbjct: 987  MNGIDACNKIQSLPLTAPPHLVLVTAYGRDEVFHNAENAGIRDVLVKPVTASTLFDTAIR 1046

Query: 119  YIG 121
             IG
Sbjct: 1047 VIG 1049


>gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 11  MVMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 71  GLQVLQRLRADNHT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|222082916|ref|YP_002542281.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727595|gb|ACM30684.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 240

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED+     +  +L++++G+ A    +G E   L  +HK D+I++D  L    G  
Sbjct: 8   HILIVEDDTDIAHMLVELVKSNGFEATSAASGGEMDRLLARHKFDLIVLDGMLPGEDGFS 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++     + IP++ +TA     D     + G + Y++KP +    M  IK  +  A
Sbjct: 68  ICRRLRSS---RSIPILMLTALREDVDRILGLELGADDYVTKPFNSRELMARIKSILRRA 124


>gi|218439743|ref|YP_002378072.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
 gi|218172471|gb|ACK71204.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
          Length = 121

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+  V++VED     +L    +  +GY  +   +G EA+E     KPDVI+ D+ +  ++
Sbjct: 1   MMTIVLVVEDTLSEQELISLYLRNAGYTVITANDGKEAMEKTLAQKPDVIVTDVVMPNMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G E+ + IK++ + Q++PVIA T+   + D     K G + Y++KP +    +  ++  
Sbjct: 61  GFELCRSIKKNPQTQKLPVIACTSKTQELDRLWGMKQGIDVYVTKPFTQEELVRAVRSV 119


>gi|88602714|ref|YP_502892.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
 gi|88188176|gb|ABD41173.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
          Length = 393

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
            +++IV+D+    +  ++ +   GY   +  +  +ALE   +H   D+I++D+ +   SG
Sbjct: 6   ARLLIVDDDPAIREFLKNRLMMEGYEVSEAEDAEKALERLEEHPDTDLILLDVIMPGASG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ + +KED    +IPVI VTA  +  D+E   + G   Y++KP      +  I  +I
Sbjct: 66  FDLLRTLKEDRRYCQIPVIMVTALGLVQDKELAFRLGAGDYLTKPFDTREMLARIGTHI 124


>gi|29347164|ref|NP_810667.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339063|gb|AAO76861.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 921

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++DNE        L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 676 VLIIDDNEDIRSYVHTLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 734

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 735 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 790


>gi|302337571|ref|YP_003802777.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634756|gb|ADK80183.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 236

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++ IV+D E             G+      +G  A +   Q  P +I++DI + ++ GL
Sbjct: 5   KRIAIVDDEEALTATLAFAFRREGFEIELFHDGAAAWQHFSQRLPHLIVLDIMMPKMDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K ++  SE  ++P+I +++   + D     + G + Y+SKP S+   +  ++  +  
Sbjct: 65  TLCKLLR--SEGMQVPIIFLSSRDDEIDRLLGFESGGDDYLSKPFSVRELLARVRAVLRR 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++ +D++   +L    +E  G+  ++  +G EA     + + D+ ++DI +    G
Sbjct: 1   MIQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+TK+IKE     +IPV+ VTA     D+ +    G + Y+ KP      +  +K  + 
Sbjct: 61  WELTKEIKE---YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 240

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 9   EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68
           +D     ++    ++ +GY  +   +G EAL L  Q +PD++++D+ L ++ G  + +++
Sbjct: 2   DDEAAVRRVLLMRLQLAGYRVICAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFAVCRRL 61

Query: 69  KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +S    +P+I ++A     +       G + Y+ KP S       I   +  
Sbjct: 62  RAESC---VPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRR 112


>gi|160887592|ref|ZP_02068595.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483]
 gi|156108003|gb|EDO09748.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483]
          Length = 1360

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VEDN+      ++ +E   Y  ++  +G E    A +  P++II DI + ++ G+
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ ++IK + +   IPVI +TA      +    + G ++Y+SKP +  + M  I+K I +
Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1226


>gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2]
          Length = 240

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     E+P+I +TA   + D     + G + Y+ KP +    +   K  +  
Sbjct: 67  ICRRLRQMGN--ELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123


>gi|332701444|ref|ZP_08421532.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551593|gb|EGJ48637.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 697

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 75/121 (61%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N    + L++ +G+       G E LE+  +   D ++MD+Q+ E+ G+E
Sbjct: 565 RILVAEDNPINQIFIQALLQDAGHDVRIAPTGCEVLEVLARDCFDCVLMDVQMPEMDGME 624

Query: 64  ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T++I+     L +IP+IA+TA+AMK D+ERI   G + Y++KP+ ++ F   +++ +  
Sbjct: 625 TTRRIRAMAPPLCDIPIIALTAYAMKEDQERIMSAGMDGYVTKPVDIAEFSRVLREKLAH 684

Query: 123 A 123
           A
Sbjct: 685 A 685


>gi|302037442|ref|YP_003797764.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605506|emb|CBK41839.1| putative Histidine kinase with protein phosphatase region
           [Candidatus Nitrospira defluvii]
          Length = 563

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 64/116 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ +D  +N ++   L+   G+  +   +G +A+ L  Q +PD++IMD+ + E+ G +
Sbjct: 2   KILVADDTIVNRRILEALLGKDGHTVVLAEDGKQAVALFEQEQPDLVIMDLMMPEMDGYQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            TK IK+ +  + +PVI +TA   +    +    G + +++KP + +I    I  +
Sbjct: 62  ATKLIKQQTGSRFVPVIFLTAVTNEDVLAKCIAHGGDDFLTKPYNHTILRAKIAAW 117


>gi|298480780|ref|ZP_06998976.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. D22]
 gi|298273214|gb|EFI14779.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. D22]
          Length = 945

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 700 VLVIDDNADIRSYVRGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 758

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 759 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 814


>gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
 gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
          Length = 1476

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + + E
Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335


>gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 220

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +  +  R  +   G+      +G  AL  A     D++++D+ L +  GL+
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGLPKRDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PV+ VTA     D  +    G + Y+ KP  L      ++  I  
Sbjct: 62  VLRALRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118


>gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 210

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 59/118 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++++D+   + L RD +   GY  L   NG  AL +  Q  PD+II D+ + E+ G 
Sbjct: 5   KRLLLIDDDPNLILLVRDYLGFRGYDVLTAENGRTALGVLEQDIPDMIICDVMMPEMDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +Q++++     +PV+ ++A     D  +    G + Y+ KP      +  ++  +
Sbjct: 65  TFVEQVRQNERTSWVPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 122


>gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +M+ ED+ +N ++   ++   G+      NG EA+ L  +   + I+MD+Q+  + G+E 
Sbjct: 768 IMVAEDSPVNQRVISHVLHKMGHSFTIVENGQEAVTLWEKRNFNAILMDVQMPIMDGIEA 827

Query: 65  TKQIKEDSELQE--IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T++I+     +E  +P+IA+TA AM+ D ER    G   Y+SKP+   +  E + K+
Sbjct: 828 TRRIRALDTHRENPVPIIALTAHAMQSDRERCLDAGMNDYLSKPLDPGMLAEKLAKW 884



 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 16/122 (13%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59
           V++V+D+  N  + R+L+     +  + ++G EAL + ++H        +++ D+Q+  I
Sbjct: 623 VLVVDDHATNRAILRELLAGWKALVEEAKDGFEALTILKEHEAQGNPIRLLLSDLQMPGI 682

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFME 114
            GL + +++ E       P   + + +         +GG      + ++ KP   S  ++
Sbjct: 683 DGLALAQRV-EKLCGSHPPAFILISSSQIE-----LEGGIAPSIVKDFLLKPFDPSHVLD 736

Query: 115 TI 116
            +
Sbjct: 737 CV 738


>gi|256419372|ref|YP_003120025.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256034280|gb|ACU57824.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 2037

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            K V++V+D+  N+       E      +   +G EA+ +  ++   D+++MDI + E+ G
Sbjct: 1917 KNVLVVDDDVRNLFALTTAFERFHINTITAESGKEAMNILSENSDIDIVLMDIMMPEMDG 1976

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  ++I+ + +   +P+IAVTA AMKGD E+  + G   YI+KP+ +   +  ++ ++
Sbjct: 1977 YETMQKIRREHKNSALPIIAVTAKAMKGDREKCLEAGASDYITKPLKIDQLLSLMRVWL 2035



 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 3/121 (2%)

Query: 2    LKKVMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
             KKV++VEDNE +      +++           NG  A++       D II D  L +I 
Sbjct: 1769 TKKVLVVEDNEPDASQIARILDNGELIEMDFVENGKAAIDKVNSTAYDCIIADYMLPDID 1828

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM--ETIKK 118
            G E    +   +     PVI  +A     +E    K      + K ++    +  ETI +
Sbjct: 1829 GAEFVANMNTVNRHNATPVIVYSAKDFTNNERSKLKQYANKILLKGVNSLDLLLEETIMQ 1888

Query: 119  Y 119
             
Sbjct: 1889 L 1889



 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 3/108 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVED+    K+  +     G   +   +  +  +L  ++ P  + +D++L + SG  +
Sbjct: 1650 VLIVEDDVRFAKIMLEKAHEMGLKVVVATSFGDVFDLTNKYNPIAVTLDVKLPDASGWRV 1709

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
                K D  L+ IP+  ++    + +       G  ++  KP+     
Sbjct: 1710 LDLFKNDINLRHIPIHLISG---EENRLLAMHRGARSFNLKPLKAEAL 1754


>gi|227515346|ref|ZP_03945395.1| two component response regulator [Lactobacillus fermentum ATCC
           14931]
 gi|227086260|gb|EEI21572.1| two component response regulator [Lactobacillus fermentum ATCC
           14931]
          Length = 223

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ ED +   +     ++ +GY      NG EA++LA Q   DVII+DI + +++G+E 
Sbjct: 3   ILLAEDEKQLSRALVTAMQANGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGIEA 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            KQ+++     +  VI +TA A   D+      G + Y++KP SL   +  ++     +
Sbjct: 63  LKQLRQTGN--KTYVIMLTAMAEIDDKVTGLDAGADDYLTKPFSLKELLARLRSLERRS 119


>gi|86157034|ref|YP_463819.1| response regulator receiver domain-containing protein
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773545|gb|ABC80382.1| response regulator receiver domain protein (CheY-like)
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 123

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 67/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   + + R ++  S Y  +  R+G E +E AR+ KPD+I+MD+ +  + G 
Sbjct: 4   KKILLVDDSSTVLLMERMILAKSAYDVVTARDGQEGVEKAREEKPDLILMDVVMPRMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++++E  E   IPVI VT        E     GC  Y++KPI+    +  ++  +G+
Sbjct: 64  EACRKLREHEETAAIPVIMVTTRGELASVETGYASGCTDYVTKPINGLELLAKVRSCLGQ 123


>gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces
           tenjimariensis]
          Length = 234

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+ VED+++  +  +  +E  G+      +G+  LE  R  +PD+ ++D+ L  + G+ 
Sbjct: 5   HVLFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRADRPDIALLDVMLPGMDGVS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S    +PVI ++A A   D     + G + Y++KP   ++ +  I+  +  
Sbjct: 65  LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120


>gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Rv]
 gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis AF2122/97]
 gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis GM 1503]
 gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T17]
 gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis 210]
 gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN R506]
 gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN V2475]
 gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3
 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3
 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
 gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis]
 gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis W-148]
 gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 785

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ EDN +N +L R ++E+ G       NG +A+E     + D++ MD Q+ E+ G E 
Sbjct: 664 VLLAEDNPVNQELGRLVLESLGCKVDVVGNGRQAVEAVSDREYDLVFMDCQMPEVDGYEA 723

Query: 65  TKQIKED-----SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T+ I++       + + IPVIA+TA AM GD E     G + Y SKP +       + ++
Sbjct: 724 TRSIRQREAETGEQTRHIPVIALTAHAMDGDRETCLSAGMDDYASKPFTPIQLQALLNRW 783

Query: 120 IG 121
             
Sbjct: 784 CR 785


>gi|326800911|ref|YP_004318730.1| Crp/Fnr family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551675|gb|ADZ80060.1| transcriptional regulator, Crp/Fnr family [Sphingobacterium sp. 21]
          Length = 347

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K V+I+EDN+   +   +++E +GY       G   +ELA ++KPD+I+ DI +  + G
Sbjct: 1   MKNVLIIEDNDDIRESTVEILELAGYRVFSATEGRSGVELALKNKPDIILCDIMMPNLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +   + +  E   IP I +TA A + D  +  + G + Y++KP      +  I+  + 
Sbjct: 61  YGVLFLLGKHQETASIPFIFLTAKAERADMRKAMEMGADDYLTKPFDDVELLNAIETRLR 120

Query: 122 E 122
           +
Sbjct: 121 K 121


>gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+       GM+A+  AR+  PD +++D+ L +  GLE
Sbjct: 24  RVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMMLPDFDGLE 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+    +PV+ +TA     D       G + Y++KP SL   +  ++  +  
Sbjct: 84  VLRRMRTDN--PNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRR 140


>gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 215

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+VED+    KL R  +   GY      +G EAL+   +  PD++I+D+ L  + G  + 
Sbjct: 1   MVVEDDMHIGKLLRLELGHEGYEVEVLTDGKEALKHLEKELPDLLILDVMLPGLDGFSVL 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+E     ++PVI +TA     D  R  K G + Y+ KP  +   +  I+  +  
Sbjct: 61  EEIREYIST-DLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRR 116


>gi|295838626|ref|ZP_06825559.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74]
 gi|295827102|gb|EFG65240.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L   R+ +PD+I++D+ L  I G E+ 
Sbjct: 11  LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEVC 70

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 71  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124


>gi|291571978|dbj|BAI94250.1| adenylate cyclase [Arthrospira platensis NIES-39]
          Length = 344

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 64/115 (55%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           MIV+DNE+N  L    ++  GY  L   NG EAL++ R    D++++DI + +++G ++ 
Sbjct: 1   MIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPLDLVLLDIMMPQMNGYQVL 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +K D +L+ IPVI ++A        R  + G E Y+SKP +  +    I   +
Sbjct: 61  ESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACL 115


>gi|282858981|ref|ZP_06268119.1| response regulator receiver domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588261|gb|EFB93428.1| response regulator receiver domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 58/119 (48%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +   ++ +  +E  GY      +  EAL         + I+DI + E+SG +
Sbjct: 5   RILVVDDEQDLCEIMQFNLENEGYQVAVAYSAEEALARTDLPTFHLFILDIMMGEMSGFK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++K+D    +  +I VTA   + D       G + Y++KP S+   +  +K  +  
Sbjct: 65  LAQKLKQDPATNQAAIIFVTARDTENDIITGLTLGADDYMAKPFSVRELILRVKAVLRR 123


>gi|255530119|ref|YP_003090491.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255343103|gb|ACU02429.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           +K++++VED+     L +D ++  G +  +   +G E L+   + + D+ I+D+ + +  
Sbjct: 1   MKRILLVEDDPNLGLLLQDYLQLKGKFDVVLCADGEEGLKAFSKQEFDLCILDVMMPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I++ +  QE+P+I  TA AM  D+      G + YI+KP  +   +  I   +
Sbjct: 61  GFTLGKEIRKIN--QEVPIIFATAKAMMEDKASAYDLGGDDYITKPFRIEELLLRINALL 118

Query: 121 GE 122
             
Sbjct: 119 KR 120


>gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1129

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ ED   N K+   +++  G+  +   NG EA++  R    DV++MD+Q+  + GL+
Sbjct: 856 RVLVAEDTPANQKVINAILKKRGHQCVIADNGREAVDCLRNESFDVVLMDVQMPTMDGLQ 915

Query: 64  ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T  I+E+        P+IA+TA+AM+GD ++    G ++YISKPI     +  +++ 
Sbjct: 916 ATAMIRENEYGSGVHTPIIAMTAYAMRGDRDKCIAAGMDSYISKPIDAKKLILILERL 973



 Score = 87.5 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEI 59
           V++V+DN+ N  +  +++           +  EAL+       ++    ++I+D  + E 
Sbjct: 715 VLVVDDNQTNRVILEEMLTNWSMSPTPVDSAREALDQLSALSEKEKSYPLVIVDALMPET 774

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G  + +Q +E+  L    ++ +++   +   ER +     A++ KP+S S  ++ I   
Sbjct: 775 DGFMLLEQAREEGLLDSATILMLSSADHQIFSERCQGLDISAFLEKPVSQSDLLDAIMTA 834

Query: 120 I 120
           +
Sbjct: 835 L 835


>gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I+ED +   K  +  +E + Y      NG++ L LA     D+I++DI L  I+G E
Sbjct: 2   KILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIMLPGINGKE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + KQI+        P I +TA     D+      G + YI KP S S  +  I+  +  
Sbjct: 62  VLKQIRNTGI--HTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRR 118


>gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
 gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
          Length = 1683

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             K+++VEDNELN +L  +L++ S        NG  A+E       D I+MD+Q+  + G 
Sbjct: 1341 AKILLVEDNELNQELALELLKQSNIDVELAENGAIAVEKFSSRHFDGILMDLQMPVMDGF 1400

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              TK I+E      IP+IA+TA AM  D+E++   G   +I+KPI+++    TI K++  
Sbjct: 1401 TATKIIRESD--SSIPIIAMTANAMVSDKEKVLASGMNDHITKPINVNTMFATIAKWVSP 1458

Query: 123  A 123
            +
Sbjct: 1459 S 1459



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEIS 60
            K+++IV+DN L + +   ++++     +   +G EA+EL +Q     D I++D  + ++ 
Sbjct: 1195 KRILIVDDNLLALDVLSSILKSFHCHVVAANSGEEAIELVKQATLTFDFIMLDWNMPDLD 1254

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+E    IK  +  Q+   I VT+ A   +     K    + + KP++ S   + + + 
Sbjct: 1255 GIETYHIIKSQNNYQDNQFILVTSNANDNEAVDQLKKRINSVLVKPVTSSSIFDEMMRL 1313


>gi|94309460|ref|YP_582670.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353312|gb|ABF07401.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Cupriavidus metallidurans CH34]
          Length = 244

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+     L R+ + + G+      +G        + +P +I++D+ + ++ GL  
Sbjct: 9   ILVVDDDPELRDLLREYLTSQGFAVSVLHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++  ++  +IPVI +TA + + D     + G + Y+ KP S    +  I   +  
Sbjct: 69  LRNLRAKND--DIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRR 124


>gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 1476

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + + E
Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335


>gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1103

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 4/120 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N  + +  +   GY      +G EAL   R    D+++ D  +  + G E+
Sbjct: 833 ILVVDDQPTNRDVIQRQLNHLGYQCEMAVHGQEALHKWRNGSFDLVLTDCHMPVMDGYEL 892

Query: 65  TKQIKEDSE----LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           TKQI+E       L   P++A+TA AM    E+    G + Y++KP+ L    ++I+K++
Sbjct: 893 TKQIRESERKDKTLGHTPIVAITANAMVEASEQCIASGMDDYLTKPVELKTLDQSIEKWM 952


>gi|228945524|ref|ZP_04107874.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814042|gb|EEM60313.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 190

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P+I ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQRLRADNNA--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|218887412|ref|YP_002436733.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758366|gb|ACL09265.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1162

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VED+ +N    R ++E SG       +G +AL+       D ++MD+Q+  + GL 
Sbjct: 1035 HVLLVEDDAVNQLAVRRMLEKSGMTVTLVTDGQQALDALHHAAFDCVVMDVQMPVMDGLT 1094

Query: 64   ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+ I+ D        IPV+A+TA AM GD E   + G + Y+SKP+ +S   + I + +
Sbjct: 1095 ATRAIRTDPAFASRAAIPVVAMTAHAMVGDRESFMEAGMDDYVSKPVEMSGLRQAILRAM 1154


>gi|332829768|gb|EGK02414.1| hypothetical protein HMPREF9455_01684 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1268

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2    LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
             KK  +++VEDN       ++ ++   Y      +G  A  L  +  PD+II DI +  +
Sbjct: 1019 SKKMQILVVEDNNELQDFLKNSLQEL-YNISVANDGEVAWNLINRKMPDLIISDIMMPNM 1077

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             G  + + IK   +   IPVI +TA + K  +      G + YI+KP  +++  + I+  
Sbjct: 1078 DGFGLCQLIKSTFQTSHIPVILLTALSDKTKQLEGLGLGADDYITKPFDITVLTKRIESI 1137

Query: 120  I 120
            +
Sbjct: 1138 L 1138


>gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1143

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N +    ++  +G+ +    NG EAL+   +   D+++MD+Q+ E+ GLE 
Sbjct: 887  ILLAEDNRINQEFLVHMLGAAGHRSRVAANGREALQALAEETFDLVLMDVQMPEMDGLET 946

Query: 65   TKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I+E         IP+IAVTA+AMKGD+ER    G + Y+SKP+   +    + + +
Sbjct: 947  TRRIREHDGRLFDPAIPIIAVTAYAMKGDQERFLAAGMDGYVSKPVDFGLLSRVMARVL 1005


>gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D++  ++     +   GY  L+  +G EAL++       ++++D+ +  + G
Sbjct: 1   MYNILVCDDDKEIVEAIEIYLSQEGYHVLKAYDGAEALKMLESEDVHLLVLDVMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E++    IP+I ++A +   D+      G + Y++KP +    +  +K  + 
Sbjct: 61  IRATLKIRENN---SIPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|298387513|ref|ZP_06997065.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. 1_1_14]
 gi|298259720|gb|EFI02592.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. 1_1_14]
          Length = 929

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++DNE        L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 684 VLIIDDNEDIRSYVHTLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 742

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 743 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 798


>gi|317051729|ref|YP_004112845.1| EAL domain-containing protein [Desulfurispirillum indicum S5]
 gi|316946813|gb|ADU66289.1| EAL domain protein [Desulfurispirillum indicum S5]
          Length = 542

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++IV+D E N    +  +    Y  L   NG E  + A  H PD+II D  + ++ G
Sbjct: 5   SYRILIVDDIEDNRLAIKAALRKQEYTFLDAHNGQEGFDQAVAHMPDLIITDAMMPQVDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+T+Q++E  + + IPV+ ++A   K D+ R  + G + +ISKP   +      + +I
Sbjct: 65  FEMTRQLREQEKTRRIPVLMISALDEKRDKLRALETGVDDFISKPFDKTELRVRCRAFI 123


>gi|260577913|ref|ZP_05845843.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603933|gb|EEW17180.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 228

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+    ++   +++  G+  +   +G+EA++ A +H PD+I++D+ L  ++G++
Sbjct: 7   KILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMNGID 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           + K I+E      +P++ +TA     D     + G + Y+ KP     
Sbjct: 67  VCKAIRE---TSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKE 111


>gi|256838638|ref|ZP_05544148.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
 gi|256739557|gb|EEU52881.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
          Length = 1364

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN    +  +  +    Y  L   +G +A +L  +  PD++I D+ +    G+ 
Sbjct: 1117 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1175

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK D     IPVI +TA + K  +    + G + YISKP ++ + +  ++  I
Sbjct: 1176 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1232


>gi|237653314|ref|YP_002889628.1| response regulator receiver protein [Thauera sp. MZ1T]
 gi|237624561|gb|ACR01251.1| response regulator receiver protein [Thauera sp. MZ1T]
          Length = 122

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 65/120 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KKV+I +D +  +     L++  GY      +G EA+   R  +PD++++D+ + + S
Sbjct: 1   MDKKVLIADDEQNIVISLEFLMKREGYQVEVANDGEEAVRRIRASRPDLVLLDVMMPKKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+ D E+  I ++ +TA     +  +    G +AY++KP S    ++ ++  +
Sbjct: 61  GFEVCQEIRSDPEMAGIRILMLTAKGRDTEVAKGLALGADAYMTKPFSTRELVDKVRSLL 120


>gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 774

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D++   +     ++   Y+     +G          +  ++I+DI L +++G+ 
Sbjct: 2   KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++  +   ++PV+ +TA     D+      G + Y+ KPI     +  ++  +  A
Sbjct: 62  LCRKLRSHN--YQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119



 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 54/120 (45%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++ + D+   ++L   L+   G          +  ++     PD++I+D+++   +G++
Sbjct: 487 TIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+ +   + +P++ +T          + + G + +ISKP+     +  +   +  +
Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606



 Score = 51.3 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 12/125 (9%)

Query: 2   LKK--------VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMD 53
           +KK        ++IV+ + +  +       + G  A        A  +  +++P +I+++
Sbjct: 353 MKKHPKTTVQSLLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLE 412

Query: 54  IQLQ--EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           +     E  GL + + I       EIPV+  +  +   D   + + G  A++ KP+S   
Sbjct: 413 LNFPKPEEDGLMLLEDI--AYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQ 470

Query: 112 FMETI 116
            +E +
Sbjct: 471 IVEIV 475


>gi|158424377|ref|YP_001525669.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571]
 gi|158331266|dbj|BAF88751.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D++   KL    + + G+      +G E  E     + D++++D+ L + SGL+
Sbjct: 6   HVLVVDDDQEIRKLLARYLLSQGFRTTVAASGREMEECLASSRFDMVVLDLMLPDASGLD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++  S L   P+I +TA     D     + G + Y+ KP +    +  I+  +  A
Sbjct: 66  LCRALRARSRL---PIILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRA 122


>gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K++IV+D++  ++L    +E  GY   +  NG EAL       PD  ++I+D+ + ++ G
Sbjct: 2   KILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKL-NMNPDIALMILDVMMPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++++S+   IPV+ ++A     D+ +    G + Y++KP +    M  +K  + 
Sbjct: 61  MEVIREVRKESQ---IPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|71906611|ref|YP_284198.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846232|gb|AAZ45728.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 994

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 71/122 (58%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGLE 63
           +++V+D  +N++   +++  +G  A     G  AL  AR + +PD+I++DI + ++ G  
Sbjct: 24  ILVVDDTPINLETLAEMVRHAGANARVANCGATALRYARLEPRPDLILLDIMMPDMDGHA 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--G 121
           +  +++   E ++IPVI VTA   + +EER  + G   Y+SKP+ +S+ +  I+ ++   
Sbjct: 84  VLAELRRMPETRDIPVIFVTALDDQSEEERGIREGAADYVSKPVKMSVLIARIRAHLEVR 143

Query: 122 EA 123
            A
Sbjct: 144 RA 145



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D    +     L+   GY  L   +  EA +L  +    V+I D ++ ++SG 
Sbjct: 860 QTLLLVDDEPNVLSSLTRLLRREGYAILTATSPTEAFDLLAKQPVQVVISDQRMPDMSGT 919

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA-YISKPISLSIFMETIKKYIG 121
           E   ++++         + +T +            G    +++KP       E I++   
Sbjct: 920 EFLSRVRQL--YPATIRLVLTGYTDLQSVTDAINRGAIYKFLTKPWDDDQLREQIREAFR 977


>gi|89097898|ref|ZP_01170785.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087400|gb|EAR66514.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 933

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
           K V+I +D+  N+      ++  G      +NG E LE+  ++   D+I+MDI +  + G
Sbjct: 810 KSVLICDDDNRNIYALEKALKAEGMEVTTVQNGQECLEMVGQKRDIDIILMDIMMPVMDG 869

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E  ++++    L+++P+IA+TA AMKGD+++    G   YISKP+ L   +  ++ ++ 
Sbjct: 870 YETMQRLRSMDGLEQMPIIALTAKAMKGDKQKCLDAGASDYISKPLKLDQLLSVMRVWLT 929

Query: 122 EA 123
           +A
Sbjct: 930 KA 931


>gi|121998936|ref|YP_001003723.1| response regulator receiver protein [Halorhodospira halophila SL1]
 gi|121590341|gb|ABM62921.1| response regulator receiver protein [Halorhodospira halophila SL1]
          Length = 577

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 58/116 (50%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D  +N  L   ++   G+  +   NG EA+   R+   D+I+MDI +  + G + T
Sbjct: 13  LVVDDEPVNTMLLEAILGARGFHVITATNGEEAVARFREQPVDMILMDIMMPRMDGYQAT 72

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +QIK       IPV+ VTA   +    +  + G + +++KPIS       I  ++ 
Sbjct: 73  RQIKAMDTEGFIPVLFVTALTDEQRLAQCVEAGGDDFVTKPISRVQLNAKIDSWLR 128


>gi|148265316|ref|YP_001232022.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146398816|gb|ABQ27449.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED E    L  D ++ SG+ +    +G   +   ++H PD+I++D+ L    
Sbjct: 1   MSGTILIVEDEEKLAALLADYLKQSGFDSEWLADGQAVVPWVKRHGPDLILLDLMLPGRR 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I K+I+      ++P+I +TA   + D     + G + YI KP S    +  +K  +
Sbjct: 61  GLDICKEIRS---FSDVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKSLL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|109898565|ref|YP_661820.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Pseudoalteromonas atlantica T6c]
 gi|109700846|gb|ABG40766.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Pseudoalteromonas atlantica T6c]
          Length = 331

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +KV+IV+D   N+++ + ++    Y     ++G EAL L  +  PD+I++D+ +  ++G 
Sbjct: 9   QKVLIVDDEPANLRVLKRILGDL-YRLSFAKSGEEALRLVERDLPDLILLDVMMPGMTGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K+  + + IPV+ VTA   + DE +    G   YI+KP+S ++    ++ ++
Sbjct: 68  EVCKSLKDSRQTRAIPVMFVTALNDEVDEAKGFDVGAVDYITKPVSPAVVKARVRTHL 125


>gi|315918654|ref|ZP_07914894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313692529|gb|EFS29364.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1476

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + + E
Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335


>gi|262392993|ref|YP_003284847.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
 gi|262336587|gb|ACY50382.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   G+   +  +G   L      K D+I++D+ + +++G
Sbjct: 1   MANILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAVND-KIDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E+ E    PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|237722419|ref|ZP_04552900.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|260171106|ref|ZP_05757518.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. D2]
 gi|229448229|gb|EEO54020.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1360

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VEDN+      ++ +E   Y  ++  +G E    A +  P++II DI + ++ G+
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ ++IK + +   IPVI +TA      +    + G ++Y+SKP +  + M  I+K I +
Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1226


>gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 242

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D +   KL    ++  GY  LQ R+G E LE+ R+    +I++DI + +I G+ 
Sbjct: 14  TILIVDDEKEIRKLIAIYLKNEGYEVLQARDGEEGLEIVRKRDVHLIVLDIMMPKIDGIH 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E   + E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 74  MCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129


>gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 220

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++ V+D+E    L   ++   G+         E L   +  + D++++D+ +    G
Sbjct: 1   MARILAVDDDEAIRNLLGRVLGKDGHDVRCAACAEEVLA-LKLDRYDLVLLDVMMPGTDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I+      + P++ +TA + + D       G + Y+ KP   +     +  ++ 
Sbjct: 60  FELCRAIRGSV---DAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   +  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|306521077|ref|ZP_07407424.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 233

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++ +DN    ++   L+   GY  +   NG EA+ L      D+II+D+ +   +G 
Sbjct: 7   KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDS-TIDLIILDVVMPVKTGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +I+E +     P++ +TA     D+      G + Y+SKP S S  +  +K  +  
Sbjct: 66  VACNEIREKTTA---PILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRR 122


>gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++ +D+    +L +  +    Y  +   NGMEALE   + + D++ +D+ +  + G 
Sbjct: 21  RRILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAFDRGQFDLVFLDVMMPFVDGF 80

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++I+  S   ++P++ +TA     D  +  + G + YI+KP  ++ F+  ++  +  
Sbjct: 81  DACERIRAKS---DVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRR 137


>gi|91228465|ref|ZP_01262389.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269966827|ref|ZP_06180900.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
 gi|91188000|gb|EAS74308.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269828494|gb|EEZ82755.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   G+   +  +G   L      K D+I++D+ + +++G
Sbjct: 1   MANILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAIND-KIDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E+ E    PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|62317533|ref|YP_223386.1| response regulator PleD [Brucella abortus bv. 1 str. 9-941]
 gi|83269514|ref|YP_418805.1| response regulator PleD [Brucella melitensis biovar Abortus 2308]
 gi|148558083|ref|YP_001257597.1| response regulator PleD [Brucella ovis ATCC 25840]
 gi|189022788|ref|YP_001932529.1| response regulator PleD [Brucella abortus S19]
 gi|237817081|ref|ZP_04596073.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|254691030|ref|ZP_05154284.1| response regulator PleD [Brucella abortus bv. 6 str. 870]
 gi|254695663|ref|ZP_05157491.1| response regulator PleD [Brucella abortus bv. 3 str. Tulya]
 gi|254698814|ref|ZP_05160642.1| response regulator PleD [Brucella abortus bv. 2 str. 86/8/59]
 gi|254732261|ref|ZP_05190839.1| response regulator PleD [Brucella abortus bv. 4 str. 292]
 gi|256111466|ref|ZP_05452486.1| response regulator PleD [Brucella melitensis bv. 3 str. Ether]
 gi|256256215|ref|ZP_05461751.1| response regulator PleD [Brucella abortus bv. 9 str. C68]
 gi|260544769|ref|ZP_05820590.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038]
 gi|260756626|ref|ZP_05868974.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 6 str. 870]
 gi|260760056|ref|ZP_05872404.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 4 str. 292]
 gi|260763295|ref|ZP_05875627.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260882443|ref|ZP_05894057.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 9 str. C68]
 gi|261216063|ref|ZP_05930344.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 3 str. Tulya]
 gi|265992970|ref|ZP_06105527.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297249572|ref|ZP_06933273.1| two-component system protein [Brucella abortus bv. 5 str. B3196]
 gi|62197726|gb|AAX76025.1| response regulator/GGDEF domain protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82939788|emb|CAJ12796.1| GGDEF:Response regulator receiver [Brucella melitensis biovar
           Abortus 2308]
 gi|148369368|gb|ABQ62240.1| response regulator/GGDEF domain protein [Brucella ovis ATCC 25840]
 gi|189021362|gb|ACD74083.1| GGDEF:Response regulator receiver [Brucella abortus S19]
 gi|237787894|gb|EEP62110.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260098040|gb|EEW81914.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038]
 gi|260670374|gb|EEX57314.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 4 str. 292]
 gi|260673716|gb|EEX60537.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260676734|gb|EEX63555.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 6 str. 870]
 gi|260871971|gb|EEX79040.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 9 str. C68]
 gi|260917670|gb|EEX84531.1| response regulator receiver modulated diguanylate cyclase [Brucella
           abortus bv. 3 str. Tulya]
 gi|262763840|gb|EEZ09872.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297173441|gb|EFH32805.1| two-component system protein [Brucella abortus bv. 5 str. B3196]
          Length = 456

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI +T      D+ R  + G E ++SKP++    +  +K   
Sbjct: 61  GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 80.2 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+++EL     R ++    Y      +   AL  A +   D II+         L
Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++  Q++     + IP+I +       ++E   + G   Y+ +P+        ++  I  
Sbjct: 219 KLCTQLRTIQRTRLIPIILM-----VWEDEGALELGVNDYLMRPLEKIELFARLRTQIKR 273


>gi|28199251|ref|NP_779565.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71276152|ref|ZP_00652432.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71898347|ref|ZP_00680520.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71900367|ref|ZP_00682501.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170730620|ref|YP_001776053.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182681977|ref|YP_001830137.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|28057357|gb|AAO29214.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71163070|gb|EAO12792.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71729870|gb|EAO31967.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71731870|gb|EAO33928.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167965413|gb|ACA12423.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632087|gb|ACB92863.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578243|gb|ADN62212.1| two-component system, regulatory protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVEDN    ++  + +E  G+      +G++   LA ++  DV+++D+ L  + G+E+
Sbjct: 11  VLIVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAVENSYDVVVLDLMLPRLDGIEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q+++D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 71  CRQLRKDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 127


>gi|320530934|ref|ZP_08031967.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|320136799|gb|EFW28748.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED+    +L RD +E SG+    + +G E   +A      ++++D+ L    G
Sbjct: 1   MTKILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I + ++++    +IP++ V+A     D+ R    G + YI KP S S     +K +I 
Sbjct: 61  FAICRAVRKEL---DIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHIT 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|167839158|ref|ZP_02465935.1| response regulator protein [Burkholderia thailandensis MSMB43]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+++ED++   +L R+ +++  +     R G  A+   R+H+P ++I+D+ L  + G+E
Sbjct: 9   RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+       +PV+ +TA +   D+    + G + Y++KPI   + +  ++  +  A
Sbjct: 69  VCRRIR---GFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARVRALLRRA 125


>gi|89890994|ref|ZP_01202502.1| putative two-component response regulator [Flavobacteria bacterium
           BBFL7]
 gi|89516638|gb|EAS19297.1| putative two-component response regulator [Flavobacteria bacterium
           BBFL7]
          Length = 351

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+I+ED+    +   +L+E S Y  +   NG   +ELA+++KPDV++ DI + E+ G
Sbjct: 3   MKKVLIIEDDTALRENTAELLELSDYEVITAPNGRAGIELAKKNKPDVVVCDIMMPEVDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + +  D+   +IP I ++A     +  +    G + Y++KP      ++ I+  + 
Sbjct: 63  YGVLEALSLDTSTNQIPFIFLSARTDHKEVRKGMDLGADDYLTKPFEEEELLKAIETRLA 122

Query: 122 EA 123
           +A
Sbjct: 123 KA 124


>gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   +      +   G++     +G  A++ A   +PD++I+DI L    GL
Sbjct: 19  RRVLVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 79  EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135


>gi|113969060|ref|YP_732853.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. MR-4]
 gi|114048795|ref|YP_739345.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. MR-7]
 gi|113883744|gb|ABI37796.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. MR-4]
 gi|113890237|gb|ABI44288.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. MR-7]
          Length = 338

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   N+ +   ++    Y      +G  AL L  +  PD+I++D+ +  ++G 
Sbjct: 4   ATILVVDDTPENIDILVGIL-GEDYKVKVAIDGPRALALVAKTLPDLILLDVMMPGMNGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K++     IPVI VTA +   DE +  + G   YI+KP+S  +    ++ ++
Sbjct: 63  EVCKLLKQEPLTCHIPVIFVTALSEVADETQGFELGAVDYITKPVSAPVVKARVRTHL 120


>gi|260466893|ref|ZP_05813076.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259029289|gb|EEW30582.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 243

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M++    +++V+D+     L    ++  G+      +  E  +     + D+I++D+ L 
Sbjct: 1   MMQSQPHILVVDDDREIRTLLGRYLDGQGFRVSVAADRRECEQKLGLGQFDLIVLDVMLP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + SGL+I + ++       IPVI +TA     D     + G + Y+ KP +       I+
Sbjct: 61  DGSGLDICRALR--DRKPHIPVILLTALKEDVDRIIGLELGADDYLGKPFNPRELTARIR 118

Query: 118 KYIGEA 123
             +  +
Sbjct: 119 AVLRRS 124


>gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 742

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++ ++VED+ +N      ++   G   +   NG+EA+E+ ++   D++ MD+Q+  + G+
Sbjct: 625 RRFLLVEDDSVNRMAMERILGKFGCEVISAGNGLEAVEILKRENVDLVFMDVQMPVMDGM 684

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+ I+E+  L ++P++A+TA+AM GD ER  +GG ++Y+SKP+ ++   ET+   +
Sbjct: 685 EATRIIREELGL-DVPIVAMTAYAMAGDRERFLQGGMDSYVSKPVDMARLKETVNSIL 741


>gi|218129748|ref|ZP_03458552.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697]
 gi|217987858|gb|EEC54183.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697]
          Length = 1362

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VED +      +  +    Y      NG EA +L  +  PD+ I D+ + E+ GL 
Sbjct: 1111 RVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDTPDLAISDVMMPEMDGLT 1169

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK+++ +  +PVI +TA +   D     + G +AY+ KP +  +  +TI   I
Sbjct: 1170 LCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKTIANLI 1226


>gi|189465171|ref|ZP_03013956.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM
            17393]
 gi|189437445|gb|EDV06430.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM
            17393]
          Length = 1391

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN+      R L+    Y   +  +G EALE+ ++H  D+I+ D+ +  + G+E
Sbjct: 1141 TILIVEDNKDMRSYIRTLLVGD-YRLFEAGDGQEALEIVQKHTIDLIVSDLMMPVMDGME 1199

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++IKE+     IP + +TA      E+R  + G + Y+ KP    +    I+  +
Sbjct: 1200 LSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNIL 1256


>gi|160936708|ref|ZP_02084075.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440499|gb|EDP18244.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED+EL  +L RD +E  G+      +G E L  A     D +I+D+ L   SG
Sbjct: 1   MNKVLIVEDDELIAELERDYLEAGGFEVELIFDGNEGLNRAMAGGWDALILDVMLPGKSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++++      +PVI VTA     D+ R    G + Y+ KP S +  +  +K +I
Sbjct: 61  FEVCREVRKSL---HLPVIMVTAKKEDVDKIRGLGLGADDYLVKPFSPAELVARVKSHI 116


>gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 226

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     ++  GY  ++  NG   LE+A + + D++++DI L EI+G
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++++      +IP+I +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|119512832|ref|ZP_01631899.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena
           CCY9414]
 gi|119462505|gb|EAW43475.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena
           CCY9414]
          Length = 314

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D +      R  +E  GY  ++ +NG EAL L  Q  PD+I++D  + ++ G E 
Sbjct: 14  ILIVDDEQFIRMQLRLALEREGYEIVEAQNGTEALNLCEQLHPDIILLDAIMPDMDGFEC 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++K  +  Q  PV+ +T    +   +R  + G   +I+KPI   +  + +K+ I ++
Sbjct: 74  CTRLKSVAFSQCTPVLMITGLDDQESVDRAFEVGAIDFITKPIHWPVLRQRVKRLISQS 132


>gi|116331277|ref|YP_800995.1| sensor histidine kinase and response regulator of a two component
            complex [Leptospira borgpetersenii serovar Hardjo-bovis
            JB197]
 gi|116124966|gb|ABJ76237.1| Sensor histidine kinase and response regulator of a two component
            complex [Leptospira borgpetersenii serovar Hardjo-bovis
            JB197]
          Length = 1023

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 69/113 (61%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VEDN +N K+   L+   GY A    NG+EA+E  ++ K D+I MDIQ+ E+ G E
Sbjct: 905  KILLVEDNLINQKIALRLLMKLGYTADAALNGLEAIECLKERKYDLIFMDIQMPEMDGYE 964

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             T  I++D    +  ++A+T   M+GD+E+  + G +AYI+KPI +      I
Sbjct: 965  ATHLIRKDFAKSKPVIVAMTDNVMEGDKEKCLEAGMDAYIAKPIQIQDIESAI 1017



 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 15  MKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73
            +  +   E +G+     +   EA+     + K  + + D+ L +++  E+  ++K  S 
Sbjct: 769 REQIKKFCERNGFSVKVVKTAKEAIRTIGEEEKIGIFLTDLNLPDMNLPEMLNELKNQSP 828

Query: 74  LQEIPVIA 81
             ++ +I 
Sbjct: 829 SLKLTIIL 836


>gi|116328548|ref|YP_798268.1| sensor histidine kinase and response regulator of a two component
            complex [Leptospira borgpetersenii serovar Hardjo-bovis
            L550]
 gi|116121292|gb|ABJ79335.1| Sensor histidine kinase and response regulator of a two component
            complex [Leptospira borgpetersenii serovar Hardjo-bovis
            L550]
          Length = 1023

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 69/113 (61%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VEDN +N K+   L+   GY A    NG+EA+E  ++ K D+I MDIQ+ E+ G E
Sbjct: 905  KILLVEDNLINQKIALRLLMKLGYTADAALNGLEAIECLKERKYDLIFMDIQMPEMDGYE 964

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             T  I++D    +  ++A+T   M+GD+E+  + G +AYI+KPI +      I
Sbjct: 965  ATHLIRKDFAKSKPVIVAMTDNVMEGDKEKCLEAGMDAYIAKPIQIQDIESAI 1017



 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 15  MKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73
            +  +   E +G+     +   EA+     + K  + + D+ L +++  E+  ++K  S 
Sbjct: 769 REQIKKFCERNGFSVKVVKTAKEAIRTIGEEEKIGIFLTDLNLPDMNLPEMLNELKNQSP 828

Query: 74  LQEIPVIA 81
             ++ +I 
Sbjct: 829 SLKLTIIL 836


>gi|92115368|ref|YP_575296.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91798458|gb|ABE60597.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IV+D     ++    +E + Y  L+  N   A  +    +PD++++D  +   SG+
Sbjct: 4   KTVLIVDDEASIREMIAVALEMADYRVLEADNAQAAHAMVVDDQPDLLLLDWMMPGTSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +++K D+   E+P+I +TA + + ++ +  + G + YI+KP S    +  +K  +  
Sbjct: 64  ELARRLKRDTATAELPIILLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLRR 123


>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1035

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN++N  +   ++E  GY      NG+E L+  ++   DVI+MD+Q+ E+ G+ 
Sbjct: 909  RILVAEDNKVNQMVALRILEKLGYRGDIAANGLEVLDAVQRQPYDVILMDMQMPEMDGIT 968

Query: 64   ITKQIKEDSELQEIP---VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T+++ +  +  + P   +IA+TA AM+ D +     G + Y+SKPI L   +  +++
Sbjct: 969  ATREVTQLFQGLKKPRPRIIAMTANAMESDRQLCLDAGMDDYVSKPIRLEELVRALRQ 1026



 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 7/119 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           ++V+IV+DN  N ++    I+      L   +G  AL L +Q    D+ I+D+Q+ E+ G
Sbjct: 767 RRVLIVDDNATNRQILALQIKKWKMQPLVAESGPSALALLQQQGWVDLAILDLQMPEMDG 826

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKY 119
           + + +QI+      E+P+I +T+      E E+       + ISKP+  S     +   
Sbjct: 827 VTLARQIRA--AYGELPLILLTSLGNTLTESEKAL---FSSLISKPVKQSTLYNALNSL 880


>gi|319940840|ref|ZP_08015179.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805722|gb|EFW02503.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
          Length = 233

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++I++D+   + L  D     G+  +   NG E L    +   D++++D+ +  +SG+
Sbjct: 6   RRLLIIDDDVDFVTLLVDYFTLEGFDTVPAHNGPEGLAHLAREPFDLVVLDVMMPGMSGV 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+++E S    IPV+ +TA     D     + G + Y+ KP      +  I   +  
Sbjct: 66  EVLKKMREKS---HIPVLMLTARGDPVDRIVGLELGADDYVQKPCPPRELVARINAILRR 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|315923585|ref|ZP_07919825.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313697460|gb|EFS34295.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1317

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+  +      + ++ Y  L+ ++G+EALE+      D++I D+ +  + G+E+
Sbjct: 1072 ILVVEDNQDMLTFIAKQLSSA-YSVLKAKDGVEALEILEDANIDLLISDVMMPRMDGMEL 1130

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++K D     IP++ +TA      +    K   +AYI KP S+   + TI+  +
Sbjct: 1131 CHRLKTDLTYSHIPIVLLTAKTNLESKIEGLKLAADAYIEKPFSVEYLIATIESLL 1186


>gi|306833226|ref|ZP_07466355.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304424593|gb|EFM27730.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 233

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  V++VEDN     L    ++  GY  L   NG  A+  A  H PD++++D+ L ++
Sbjct: 1   MNKTLVLLVEDNSSVRNLMTTTLKAHGYRYLTAPNGDAAILEASSHNPDIVLLDLGLPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G+E+ K+I+       +P+I ++A +   D+      G + Y++KP S+   +  ++
Sbjct: 61  DGVEVIKKIRS---WSSMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLR 115


>gi|298483802|ref|ZP_07001975.1| one-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D22]
 gi|298270096|gb|EFI11684.1| one-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D22]
          Length = 1358

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++VEDN+      ++ +E   Y  ++  +G E    A +  P++II DI + ++ G+
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1164

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+ ++IK + +   IPVI +TA      +    + G ++Y+SKP +  + M  I+K I +
Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1224


>gi|289669452|ref|ZP_06490527.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 769

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N+ + + L+   G+ A    +G  AL      + D+I MD Q+  + G  
Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALSRMESTRYDMIFMDCQMPVLDGYA 557

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+  +    +S  + IP++A+TA AM GD ER    G + Y+SKP++       +++++
Sbjct: 558 ATRHWRALETESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617

Query: 121 GE 122
             
Sbjct: 618 PR 619


>gi|260175353|ref|ZP_05761765.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1321

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+  +      + ++ Y  L+ ++G+EALE+      D++I D+ +  + G+E+
Sbjct: 1076 ILVVEDNQDMLTFIAKQLSSA-YSVLKAKDGVEALEILEDANIDLLISDVMMPRMDGMEL 1134

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++K D     IP++ +TA      +    K   +AYI KP S+   + TI+  +
Sbjct: 1135 CHRLKTDLTYSHIPIVLLTAKTNLESKIEGLKLAADAYIEKPFSVEYLIATIESLL 1190


>gi|256157697|ref|ZP_05455615.1| response regulator PleD [Brucella ceti M490/95/1]
 gi|256253331|ref|ZP_05458867.1| response regulator PleD [Brucella ceti B1/94]
 gi|261220447|ref|ZP_05934728.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti B1/94]
 gi|265996202|ref|ZP_06108759.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M490/95/1]
 gi|260919031|gb|EEX85684.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti B1/94]
 gi|262550499|gb|EEZ06660.1| response regulator receiver modulated diguanylate cyclase [Brucella
           ceti M490/95/1]
          Length = 462

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI +T      D+ R  + G E ++SKP++    +  +K   
Sbjct: 61  GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 3   KKVMIVE-DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++++V+ D        R ++    Y      +   AL  A +   D II+         
Sbjct: 160 ARILVVDEDELAAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDP 218

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++  Q++     + IP+I +          R  + G   Y+ +P+        ++  I 
Sbjct: 219 LKLCTQLRTIQRTRLIPIILMVWENEGALVVRALELGVNDYLMRPLEKIELFARLRTQIK 278

Query: 122 E 122
            
Sbjct: 279 R 279


>gi|238925846|ref|YP_002939364.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|238877523|gb|ACR77230.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
          Length = 248

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I++D +    L    ++   Y+  +     +A+        D+ I+DI L +++
Sbjct: 18  MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + + I++       P+I +TA   + D+      G + Y++KP      +  +K  +
Sbjct: 78  GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 134

Query: 121 GE 122
             
Sbjct: 135 RR 136


>gi|238755039|ref|ZP_04616387.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           ruckeri ATCC 29473]
 gi|238706743|gb|EEP99112.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           ruckeri ATCC 29473]
          Length = 315

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K++IV+D+ +N+++      ++ Y      +G +A+++     PD+I++DI++  +
Sbjct: 1   MGKPKILIVDDHPINIQILYQAF-SADYHVCMATSGKQAIDVCINQHPDLILLDIEMPGM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +G ++  ++K   + Q+IP+I +TA   +  E R    G   +ISKPI+ +     +K +
Sbjct: 60  NGFDVCARLKSSPDTQDIPIIFITAHIDEETETRCFNEGAVDFISKPINRNTVRARVKTH 119

Query: 120 I 120
           +
Sbjct: 120 L 120


>gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
 gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
          Length = 1070

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/120 (35%), Positives = 74/120 (61%), Gaps = 3/120 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED+ +NM + R ++E  G+  +  RNG EAL+  +    D+++MDIQ+ E+ G+E 
Sbjct: 951  ILLVEDDVVNMTMARRMLEKMGHSVICARNGQEALDTLQAPGVDLVLMDIQMPEMDGIEA 1010

Query: 65   TKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T+ ++ D        +P+IA+TA AM GDEE+    G +AY+SKP   +   E + ++ G
Sbjct: 1011 TEIVRNDPLFTPYARVPIIALTAHAMGGDEEKFLSHGMDAYLSKPFDHARLQELLHRFFG 1070


>gi|225028056|ref|ZP_03717248.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
 gi|224954656|gb|EEG35865.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
          Length = 245

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED     +L RD +E + +       G   L+ A +   D+II+D+ L ++ G
Sbjct: 1   MKHILIIEDERAVAELERDYLEINSFKVSIEETGEGGLQRALKGDIDLIILDLMLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++++      +IP++ V+A     D+ R    G + YI+KP S +  +  +K ++ 
Sbjct: 61  FEICRELRHRI---DIPILIVSAKKSDIDKIRGLGIGADDYITKPFSPNELVARVKAHLN 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|153870405|ref|ZP_01999814.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS]
 gi|152073130|gb|EDN70187.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS]
          Length = 620

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 70/118 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+DN  N  +F  L+   G+  ++  NG + +E A+   PD+IIMD+ +  + GL
Sbjct: 413 RKILVVDDNAANRMIFFGLLFPLGFEVIEAENGQQGIETAKALLPDLIIMDLVMPIMDGL 472

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+Q+++   L+ + +IA +A A     +     GC+ +++KPI     +E +++++
Sbjct: 473 EATRQLRQIPALKNVIIIAASASAFDKQRKECLGVGCDDFVTKPIEADEVLEKLQEHL 530


>gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 248

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++ +D+   ++L    +    Y  +   NG+EAL++ R  +  ++++D+ +  I G 
Sbjct: 19  RKILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGF 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T++I+  S   ++P+I +TA     D     + G + YI+KP   +     ++  I  
Sbjct: 79  TVTERIRARS---DVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRR 135


>gi|325571361|ref|ZP_08146861.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
 gi|325155837|gb|EGC68033.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +   +L    +   G+      +G  AL    +   DV ++D+ L +I 
Sbjct: 1   MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I++       PV+ +TA     D+      G + Y++KP +    +  +K  +
Sbjct: 61  GFQLLQTIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|323139254|ref|ZP_08074308.1| adenylate/guanylate cyclase [Methylocystis sp. ATCC 49242]
 gi|322395475|gb|EFX98022.1| adenylate/guanylate cyclase [Methylocystis sp. ATCC 49242]
          Length = 539

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 62/113 (54%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN  N  L +  +E  G+  +   NG  AL + +Q + D++++D+ + +ISG +
Sbjct: 195 RILVVDDNASNRDLLKRRLERQGHAVVLAENGSSALAIVKQAQFDLVLLDLLMPDISGFD 254

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           +   +K D  L++IPVI ++A        R  + G E Y++KP    +    I
Sbjct: 255 VLSILKSDLSLRDIPVIMISALNEIDTIVRCIEAGAEDYLAKPFEPVLLRARI 307


>gi|310823306|ref|YP_003955664.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396378|gb|ADO73837.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 397

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 61/119 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++V+I +D+  + K+   L+  S Y      +G E L    + +PD++++D+ +  + G
Sbjct: 19  TRQVLIADDDAASRKIAAALLAASDYRIRFATSGEETLAAVGEERPDLVLLDVMMPGLDG 78

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ ++++E    + IP+I VT+   + D  +  K G + ++ KP+  +     +   +
Sbjct: 79  FEVCRRLRERLSGEYIPIILVTSLDGRSDVVQGLKAGADDFLHKPVHGAELRARVSNLL 137


>gi|307298880|ref|ZP_07578682.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915305|gb|EFN45690.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +  ++     +E  G++    ++  + L+LA +   D II+D+ L  + G E
Sbjct: 2   KLLVVEDEKKLLENVAAFLERKGFLVDTAQDAEDGLDLALERNYDCIILDVILPGMGGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + ++E     ++P+I +TA           K G + Y+ KP  L      ++  I  
Sbjct: 62  FCRFLRE-EIGSDVPIIIITALGEIDSRIEGLKIGADDYLPKPFDLRELEARVRALIRR 119


>gi|225629101|ref|ZP_03787134.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|260167407|ref|ZP_05754218.1| response regulator PleD [Brucella sp. F5/99]
 gi|261756817|ref|ZP_06000526.1| GGDEF:Response regulator receiver [Brucella sp. F5/99]
 gi|225615597|gb|EEH12646.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|261736801|gb|EEY24797.1| GGDEF:Response regulator receiver [Brucella sp. F5/99]
          Length = 462

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI +T      D+ R  + G E ++SKP++    +  +K   
Sbjct: 61  GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 82.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 3   KKVMIVE-DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++++V+ D        R ++    Y      +   AL  A +   D II+         
Sbjct: 160 ARILVVDEDELAAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDP 218

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++  Q++     + IP+I +          R  + G   Y+  P+        ++  I 
Sbjct: 219 LKLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMCPLEKIELFARLRTQIK 278

Query: 122 E 122
            
Sbjct: 279 R 279


>gi|209528286|ref|ZP_03276747.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209491272|gb|EDZ91666.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 203

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 58/117 (49%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M+V+D+   + L  D +E  GY      NG +ALE   +  P++II DI + E+ G  + 
Sbjct: 1   MLVDDDPNLVILISDYLELRGYQVTIAENGQKALEKLEEEVPELIICDIMMPEMDGYTLV 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           K I+E+++   I VI ++A     D  +    G + Y+ KP      M  ++  + +
Sbjct: 61  KLIRENAQFGWISVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQ 117


>gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED E      +  ++ + +  ++   G + L+ A +   D+ ++D+ L  I G
Sbjct: 1   MSRILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEKFSIDLAVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++  ++++     +I +I +TA     D+    + G + YI KP +    +  IK  + 
Sbjct: 61  FKVCDELRK--RYPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|152999372|ref|YP_001365053.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS185]
 gi|151363990|gb|ABS06990.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS185]
          Length = 338

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   N+ +   ++    Y      +G  AL L  + +PD+I++D+ +  ++G 
Sbjct: 4   ATILVVDDTPENIDILIGILGDD-YKVKVAIDGPRALALVAKSRPDLILLDVMMPGMNGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K+D     IP+I VTA +   DE +    G   YI+KP+S  +    +K ++
Sbjct: 63  EVCKLLKQDPLTSHIPIIFVTALSESSDEAQGFALGAVDYITKPVSAPVVKARVKTHL 120


>gi|88800460|ref|ZP_01116024.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Reinekea sp. MED297]
 gi|88776790|gb|EAR08001.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Reinekea sp. MED297]
          Length = 561

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  +++I +DNE +  + R ++   G+  L   NG EA+ L    +PD+I++D+ +  
Sbjct: 1   MSKPLRILIADDNETDRMILRTIVRKEGHEVLLAANGEEAVHLFETGRPDLILLDVLMPV 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G+   ++I++D+    +P+I +T+        +    G + ++SKP +  I    IK 
Sbjct: 61  MDGVRAAEEIRKDTRRAYVPIIFLTSLQDAESLAQCLDSGGDDFLSKPYNRVILKAKIKA 120

Query: 119 Y 119
           +
Sbjct: 121 F 121


>gi|25010196|ref|NP_734591.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786780|ref|YP_328847.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77409199|ref|ZP_00785910.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77414552|ref|ZP_00790696.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|23094547|emb|CAD45766.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561837|gb|ABA44421.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77159393|gb|EAO70560.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77172207|gb|EAO75365.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDN +  K+    +   GY  +   NG EAL      +  +II DI +  + G
Sbjct: 1   MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++  S    +P+I +TA +   D  +    G + Y+ KP+ L      IK  + 
Sbjct: 61  YQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|307130253|ref|YP_003882269.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
           dadantii 3937]
 gi|306527782|gb|ADM97712.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
           dadantii 3937]
          Length = 245

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I ED      + R  +  SG   L   +G +ALEL    KPD++++D+Q+ ++ G ++
Sbjct: 18  VLIAEDEPEIADILRAYLTRSGLRTLHAADGHKALELHLSMKPDLVLLDVQMPQVDGWQV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              I+      + PVI +TA     D+    + G + Y+ KP + +  +  ++  +  A
Sbjct: 78  LAGIRHRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVQAVLRRA 133


>gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
 gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|262405712|ref|ZP_06082262.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643395|ref|ZP_06721214.1| sensor histidine kinase/response regulator family protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810622|ref|ZP_06769272.1| sensor histidine kinase/response regulator family protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|262356587|gb|EEZ05677.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641273|gb|EFF59472.1| sensor histidine kinase/response regulator family protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442164|gb|EFG10981.1| sensor histidine kinase/response regulator family protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 601

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED +    L +D++    Y+  + ++G+EAL+    + PD+II DI +  + GL +
Sbjct: 355 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 412

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++K D +   IP+I ++A A   D+      G +AYI KP      + TI+  +  
Sbjct: 413 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 470


>gi|257453011|ref|ZP_05618310.1| two component transcriptional regulator [Fusobacterium sp. 3_1_5R]
 gi|257467429|ref|ZP_05631740.1| two component transcriptional regulator [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918553|ref|ZP_07914793.1| transcriptional regulator yycF [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059551|ref|ZP_07924036.1| transcription regulator [Fusobacterium sp. 3_1_5R]
 gi|313685227|gb|EFS22062.1| transcription regulator [Fusobacterium sp. 3_1_5R]
 gi|313692428|gb|EFS29263.1| transcriptional regulator yycF [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 227

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 68/122 (55%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I++D E  ++L +  +E  GY    +  G   LE   +  P++I++D+ L EI 
Sbjct: 1   MGEKILIIDDEEAILELLKFNLEIYGYKIFTSNTGKGILEKIIEIHPNIILLDLMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ I K+++E+S   ++ +I ++A + + D+    + G + YI+KP S+   +  I  + 
Sbjct: 61  GMSICKKVRENSIWNDLRIIILSAKSQEIDKITCLEIGADDYITKPFSIRELIARIHAFS 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|239907600|ref|YP_002954341.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239797466|dbj|BAH76455.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 374

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 2   LKK-----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           +K      +++V+D E N+ +  D +    +      +G  AL LA++  PD+I++DI +
Sbjct: 1   MKTLAECLILLVDDTETNLDILVDAL-GEDHEVAVATDGPTALALAKEQTPDLILLDIMM 59

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             + G E+ +++  D    E PVI +TA     D+ R    G   Y++KP   +      
Sbjct: 60  PGMDGYEVCRRLMADPATAETPVIFLTALTDVADKTRGFAVGGVDYVTKPFEPAEIKARA 119

Query: 117 KKYI 120
           + ++
Sbjct: 120 RTHL 123


>gi|160886485|ref|ZP_02067488.1| hypothetical protein BACOVA_04496 [Bacteroides ovatus ATCC 8483]
 gi|156108370|gb|EDO10115.1| hypothetical protein BACOVA_04496 [Bacteroides ovatus ATCC 8483]
          Length = 947

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 702 VLVIDDNADIRSYVRGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 760

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 761 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 816


>gi|153873769|ref|ZP_02002241.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Beggiatoa sp. PS]
 gi|152069768|gb|EDN67762.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Beggiatoa sp. PS]
          Length = 173

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EISGL 62
            ++IV+D   N+++  D +    +  L   NG +ALE A +  PD+I++D+ +   I G 
Sbjct: 10  TLLIVDDTPENIRVLFDFLIAHDFRILVAENGEDALENAEEELPDLILLDVMMPAGIDGF 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  + +K++++ Q+IPVI +TA +   D+ +  + G   Y++KP      +  I  ++
Sbjct: 70  ETCRLLKDNAQTQDIPVIFMTALSDTLDKVKAFELGAVDYVTKPFQQEEVLARINTHL 127


>gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1223

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDNELN +     +E  G+  +   +G E L++  +   D+++MDIQ+  ++G+E
Sbjct: 1100 RILLAEDNELNREFLTIFLEEGGHSVVTACDGYEVLDILHREHVDLVLMDIQMPRMNGME 1159

Query: 64   ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T+ I+   E    +PVIA+TA +M GD +R    G   ++ KP+  +     I +
Sbjct: 1160 ATRSIRSSGEAWSTVPVIALTAHSMAGDRDRFIAEGMSDFVGKPVDRNELHAAIAR 1215


>gi|257869521|ref|ZP_05649174.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|9294730|gb|AAF86641.1|AF162694_5 response regulator VanRc [Enterococcus gallinarum]
 gi|67479938|gb|AAY67971.1| reponse regulator [Enterococcus gallinarum]
 gi|257803685|gb|EEV32507.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++  G+      +G  A+    +   D+ ++D+ L +I 
Sbjct: 1   MSEKIVVVDDEKEIADLVTTFLQNEGFSVQPFYDGTSAIAYIEKEAIDLAVLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ +QI++       PV+ +TA     D+      G + Y++KP +    +  +K  +
Sbjct: 61  GFQLLQQIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|126175701|ref|YP_001051850.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS155]
 gi|217972049|ref|YP_002356800.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS223]
 gi|304411120|ref|ZP_07392736.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS183]
 gi|307301757|ref|ZP_07581515.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica BA175]
 gi|125998906|gb|ABN62981.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS155]
 gi|217497184|gb|ACK45377.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS223]
 gi|304350655|gb|EFM15057.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS183]
 gi|306913795|gb|EFN44216.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica BA175]
          Length = 338

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   N+ +   ++    Y      +G  AL L  + +PD+I++D+ +  ++G 
Sbjct: 4   ATILVVDDTPENIDILIGILGDD-YKVKVAIDGPRALALVAKSRPDLILLDVMMPGMNGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K+D     IP+I VTA +   DE +    G   YI+KP+S  +    +K ++
Sbjct: 63  EVCKLLKQDPLTSHIPIIFVTALSESSDEAQGFALGAVDYITKPVSAPVVKARVKTHL 120


>gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED           I   G+ A    +G  A++ A Q +PD++IMDI L  + GL
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPVMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I  +   + +PV+ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 73  EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129


>gi|271969710|ref|YP_003343906.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512885|gb|ACZ91163.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+          +   G+      +G EAL+  R  +P+++I+D+ L  I G+E+
Sbjct: 4   ILLVEDDPSVRTGLELALARQGHSVTSYASGEEALDHIRSRRPEIVILDVMLPGIDGVEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I++  +L   PVI +TA     D     + G + Y+ KP+   +    I+  +  
Sbjct: 64  CRRIRKMDQL---PVILLTARGDDLDVVVGLEAGADDYVVKPVEPRVLDARIRAVLRR 118


>gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC
           19977]
 gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus]
          Length = 249

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           + ++V+D     ++    ++   +      +G  AL+LAR+  PDV+I+DI L  + G+E
Sbjct: 17  RALVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGLPGVDGIE 76

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++      +  V+ +TA   + D       G + Y++KP S    +  ++  +  
Sbjct: 77  VCRQLR---VFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRR 132


>gi|160945777|ref|ZP_02093003.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443508|gb|EDP20513.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
           M21/2]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           K++++V+D    +++ + +   +G+   L   +G  AL++  + +PD++I+D+ +  + G
Sbjct: 4   KRILVVDDETDLLEMVKSIFTRAGFTQILTASSGEAALKMCEEQEPDMMILDVMMPGMDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K++++     +IPV+ +TA     D+    + G + Y+ KP      +  ++  + 
Sbjct: 64  FAALKELRK---TSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILK 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|146302697|ref|YP_001197288.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146157115|gb|ABQ07969.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 228

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 2   LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +K  K++  ED+E    L +D +E + Y  +   NG   LE  +    D+ I DI + ++
Sbjct: 1   MKNFKILYTEDDETLAFLTKDNLEQNNYEVIHCTNGKSGLETFKNEDFDICIFDIMMPKM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ +++++     ++P+I ++A  +K D  +  + G + Y+ KP S+   +  I+ +
Sbjct: 61  DGFELAEEVRKIDN--DVPIIFLSAKTLKEDRIKGLRLGADDYLVKPFSIEELILKIEVF 118

Query: 120 IGEA 123
           +  +
Sbjct: 119 LKRS 122


>gi|29346892|ref|NP_810395.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386461|ref|ZP_06996017.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|29338790|gb|AAO76589.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260838|gb|EFI03706.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++       +I++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +   +P+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 230

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D+    +L    ++  GY  +   +G EAL     +    ++I+D+ +  ++GL
Sbjct: 2   KILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTNPDIALMILDVMMPNMNGL 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K +++DS    IP++ ++A +   D+ +    G + Y++KP +    M  ++  +  
Sbjct: 62  DVVKTVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 123 A 123
           A
Sbjct: 119 A 119


>gi|295135073|ref|YP_003585749.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294983088|gb|ADF53553.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  + Y     +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGTVLKDYLAMNEYEVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +E  EIP+I +TA AMK D  +  K G + Y++KP    + +  IK  +  
Sbjct: 66  TLAKEIREKNE--EIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQR 123


>gi|254562811|ref|YP_003069906.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Methylobacterium extorquens DM4]
 gi|254270089|emb|CAX26076.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Methylobacterium extorquens DM4]
          Length = 270

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+     L  + +  +G       +G +        + D++++D+ +    GL 
Sbjct: 29  HVLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQMRAFLDADRVDLVVLDVMMPGDDGLV 88

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     +  PV+ +TA + + D     + G + Y+ KP +    +  IK  +  
Sbjct: 89  LCRELRS-GRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRR 146


>gi|255690604|ref|ZP_05414279.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM
           17565]
 gi|260623875|gb|EEX46746.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM
           17565]
          Length = 228

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL         +I++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAL-KLDICSYQLILLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  ++P+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|118593336|ref|ZP_01550720.1| two-component response regulator [Stappia aggregata IAM 12614]
 gi|118434014|gb|EAV40671.1| two-component response regulator [Stappia aggregata IAM 12614]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L  D++   G+   Q  +G +   +  + KPD +++D+ L    GL 
Sbjct: 7   TILIVDDDPEIRRLVGDVLRKEGFGIEQAMSGRDMDAVLERVKPDAVVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++ D     +P++ ++A   + D     + G + YI KP +   F+  ++  +  +
Sbjct: 67  ICRRLRADD---TLPILFLSARGDEVDRVVGLEIGADDYIVKPFAPREFVARVRALLRRS 123


>gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti]
 gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti]
          Length = 246

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    ++     E  GY      +G E  E   +   DVI++D+ L    GL 
Sbjct: 10  HILVVDDDSRIRQMLSRYFEEEGYRVSLAGDGQEMRECLDKQPVDVILLDLMLPGEDGLT 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+  S   ++P+I +T  +   D     + G + YI+KP  L   +  ++  +  
Sbjct: 70  LARDIRARS---DVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVLRR 125


>gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 418

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 59/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN+ N  L    +E  G+      +G EAL    +  PD+I++D+ + E+ G+E+
Sbjct: 36  ILIVDDNQNNCDLLNRRLERKGFRCAIALSGREALRQVEKQPPDLILLDVMMPEMDGMEV 95

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++ +    E+PV+ VTA     D       G   YI KP+   I +  I+ ++
Sbjct: 96  LDILRRNFNSVELPVLMVTAKNAHEDIISAFAQGANDYIEKPVDFPIMLARIRHHL 151


>gi|330825319|ref|YP_004388622.1| two component heavy metal response transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329310691|gb|AEB85106.1| two component heavy metal response transcriptional regulator,
           winged helix family [Alicycliphilus denitrificans K601]
          Length = 221

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     +  R  +  +G++A   +NG + L LA Q + D++I+D+ L  + G +
Sbjct: 2   KILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      ++PV+ +TA     D  +  + G + Y+ KP S +  +  ++  +  
Sbjct: 62  VLQSLRNRGL--QMPVLYLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRR 118


>gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 230

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK+++V+D +          +  GYI     +G EALE  +  +PDV+I+D+ + +++
Sbjct: 1   MNKKILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVMMPKLT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++      + + +I +T      D+    + G + Y++KP  +   +   K  +
Sbjct: 61  GYEVCRKL---ENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALV 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED      + +  +   GY   +  +G  A++L  +   D++I+DI L +  G
Sbjct: 1   MKKILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++IK+      +PV+ ++A     DE    + G + YI+KP +  I +  IK  I
Sbjct: 61  WSVLREIKK---YSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALI 116


>gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 230

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D    ++  +  +  +GY  +    G EAL+ A    PD+I++D+ L ++ G +
Sbjct: 5   RILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQSPDIILLDLGLPDMDGKD 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++      + P++ ++A   + ++      G + Y++KP  +      ++  +  A
Sbjct: 65  VIRELR---GWSKTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALRHA 121


>gi|237716942|ref|ZP_04547423.1| LOW QUALITY PROTEIN: two-component system sensor histidine
           kinase/response regulator [Bacteroides sp. D1]
 gi|229442925|gb|EEO48716.1| LOW QUALITY PROTEIN: two-component system sensor histidine
           kinase/response regulator [Bacteroides sp. D1]
          Length = 616

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED +    L +D++    Y+  + ++G+EAL+    + PD+II DI +  + GL +
Sbjct: 370 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 427

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++K D +   IP+I ++A A   D+      G +AYI KP      + TI+  +  
Sbjct: 428 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 485


>gi|221067032|ref|ZP_03543137.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712055|gb|EED67423.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 230

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED           +   G+      NG++ L LA +   D+I++D  L  I GL 
Sbjct: 2   KILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGLA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +   +++    ++ PV+ +TA     D  +  + G + Y+ KP + S  +  +   +  +
Sbjct: 62  VLAALRQ---TKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRS 118


>gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25]
 gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|330821703|ref|YP_004350565.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327373698|gb|AEA65053.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1172

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLE 63
            +++ ED+  N+     +IE  G      RNG EALEL  Q HK D+I+MD+ + E+ GL 
Sbjct: 1053 ILLAEDDARNIFALSHVIEPLGAKLFIARNGREALELLEQGHKIDLILMDVMMPEMDGLA 1112

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T  I++D+    +P+IA+TA AM+ D  R  + G + YISKPI +   +   + ++ +
Sbjct: 1113 ATAAIRKDARFMRLPIIALTAKAMEHDRIRCIEAGADDYISKPIDIDKLVSLCRVWLRQ 1171



 Score = 92.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ +ED+ +   + RDL+    +  +   +G   + L R  +P  +++D+ L + SGL +
Sbjct: 785 ILAIEDDLVFAGILRDLVHELDFDFVHAADGSSGVALVRDMQPTAVLLDVGLPDRSGLTV 844

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +K D   + IP+  V   A      +    G   Y  KP + +   + I++  G 
Sbjct: 845 LEWLKSDPLTRHIPIHIV---AATDHIAKALHLGAAGYTLKPAARATLEDAIRRLEGR 899



 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+++ED+    +  RDL+       +       ALE       D ++ D+ L + +G 
Sbjct: 905 KRVLVIEDDTAMREGIRDLLTNETTEIVAVDTLASALENLDLVDFDCVVTDLALPDGTGY 964

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
           ++ + +  D     +PVI  T  A+  DEE   +
Sbjct: 965 DLLETLAADPARALLPVIVYTGRALSADEEHRLR 998


>gi|325921446|ref|ZP_08183302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
            19865]
 gi|325548088|gb|EGD19086.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
            19865]
          Length = 1054

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 66/120 (55%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              V++ ED+  N+     ++E  G      RNG EALE   +H+ ++++MDI + E+ GL
Sbjct: 934  ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLARHEVNLVLMDIMMPEMDGL 993

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               +QI+ + + Q++P+IA+TA AM  D ER  + G   YI KPI +   +   + +   
Sbjct: 994  TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIPKPIDVDKLVSLCRVWCSR 1053



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    +   DL     +  +   +  EAL+LA   +P  I++DI L + SGL +
Sbjct: 668 ILAVEDDTRFAQALVDLAHELDFDCVVAPSAEEALQLAADLRPSGILLDIGLPDASGLSV 727

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + IPV  V+A       +   + G   Y+ KP +  +    I++ 
Sbjct: 728 LERLKRDPATRHIPVHVVSAMERS---QIALELGAVGYLIKPATRELLAGAIRQL 779



 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVED+         L+       +   +  EA++       D ++ D+ L + SG 
Sbjct: 788 RRLLIVEDDSALRANLELLLARDQLEIVAVGSIAEAMQQLAGSTFDCMVTDLALPDGSGY 847

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116
           ++ +++  +  +   PVI  T  A+  DEE+  +   ++ I K + S    ++ +     
Sbjct: 848 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQRLRRYSKSIIIKGVRSPERLLDEVTLFLH 907

Query: 117 ----------KKYIGEA 123
                     ++ + EA
Sbjct: 908 SVEASLPSDQQRLLREA 924


>gi|300112844|ref|YP_003759419.1| response regulator receiver protein [Nitrosococcus watsonii C-113]
 gi|299538781|gb|ADJ27098.1| response regulator receiver protein [Nitrosococcus watsonii C-113]
          Length = 132

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 60/116 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KVM+V+D++   K    L++  G   +   +G EAL    QH PD+I +DI +  + G +
Sbjct: 13  KVMVVDDSKTIRKTAETLLKKFGCKVVTAEDGFEALPKINQHHPDIIFIDIMMPRLDGYQ 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
               IK +S L+  PVI +++     D  R R  GC+ Y++KP +    +  I  +
Sbjct: 73  TCTLIKNNSALKNTPVIMLSSKDGLFDRARGRIAGCDQYLTKPFTREELLGAISSH 128


>gi|269118927|ref|YP_003307104.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268612805|gb|ACZ07173.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 232

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +KK  +++VED+     L +  +E   +  +  +N  +ALE+ + +KP+++I+DI L  +
Sbjct: 1   MKKNTILVVEDDLEIKTLIQFFLEKENFNVITAQNSGKALEMLQNNKPELVILDIMLPGL 60

Query: 60  SGLEITKQIKEDSELQEIPVI-AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +GLEI K IK++S     P I  +TA     D     + GC+ Y+ KP      +  IKK
Sbjct: 61  NGLEIAKLIKKESHKYGTPFIFMLTAKTETEDVIDGFQAGCDDYLRKPFDPRELILRIKK 120

Query: 119 YI 120
            +
Sbjct: 121 LL 122


>gi|255009001|ref|ZP_05281127.1| putative two component system histidine kinase/response regulator
           fusion protein [Bacteroides fragilis 3_1_12]
 gi|313146741|ref|ZP_07808934.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313135508|gb|EFR52868.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 375

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 64/113 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+ L + L+    +  +   NG +AL+  ++  PD+I++D+ + ++SG E
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFNIVTACNGTQALDQVKKENPDLILLDVMMPDMSGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           +++++K D E   IP+I +TA     D  +  + G   +ISKP +    +  +
Sbjct: 71  VSQKLKADPEAAHIPIIFLTALNSTADIVKGFQVGGNDFISKPFNKEELIIRV 123


>gi|161779855|gb|ABX79416.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +   +L    +   G+      +G  AL    +   DV ++D+ L +I 
Sbjct: 1   MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I++       PV+ +TA     D+      G + Y++KP +    +  +K  +
Sbjct: 61  GFQLLQTIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016]
 gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 1072

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 5/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
           KV++ EDNE+N ++  +L+E +G +     NG EAL+        +   D+I MD+Q+  
Sbjct: 696 KVLLTEDNEINQQIAVELMEGNGLLVTVANNGQEALDHLEAMAKGESHFDIIFMDLQMPV 755

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E + +I+ +S    IP+IA+TA AM  + ER    G   +ISKPI   I   TI+K
Sbjct: 756 MDGYEASHRIRANSSYDTIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPEILFNTIRK 815

Query: 119 YIGE 122
           +   
Sbjct: 816 WCPR 819



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 63/125 (50%), Gaps = 6/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           ++++V+DNE  +++ ++++ T         +G +A++  R+      K D+I MD  + E
Sbjct: 546 RILVVDDNEHALEIMQEMLSTLPGKVALANSGQQAVDCIRKASEQREKFDLIFMDWNMPE 605

Query: 59  ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + G+E ++ I+E    +  P ++ VTA+  +   +         ++SKP+  S   + + 
Sbjct: 606 MDGIETSRLIRESFASEYQPQIVIVTAYDKEDVLDATNDLDIAGFLSKPVGQSYLFDLLV 665

Query: 118 KYIGE 122
           +  G 
Sbjct: 666 ELFGR 670


>gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
 gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
          Length = 236

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    +L    +  +G+      +  EALE   +  PDV+++D+ L    G E
Sbjct: 8   RVLVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRPPDVVVLDVMLPGADGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I + ++  +   ++PV+ +TA     D  R  + G + Y++KP S+      ++  +  A
Sbjct: 68  ILQLLRARAV--DVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRRA 125


>gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 224

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED+     L   ++  +GY      N   A EL +  + D+++ DI + ++ G
Sbjct: 1   MVKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYELLQSEQFDLVLSDIMMPQVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  ++++       IP++ +TA      +E+    G + Y+ KPI+ +  +  IK  + 
Sbjct: 61  YQFAQELRRTD--PSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|291518383|emb|CBK73604.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQE 58
           +  ++I +D +  +   R  +E+ G       NG EA+++          +I+MD+ + E
Sbjct: 1   MNNILICDDEKDIISALRIYLESEGMNVTAASNGREAVDIMAGPNGKDMQLILMDVMMPE 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G+    +I++      +P+I +TA +   D+      G + Y++KP +    M  +K 
Sbjct: 61  MDGIAAMAEIRK---TSNVPIIMLTAKSEDADKVIGLTVGADDYVTKPFNPVELMARVKS 117

Query: 119 YIGE 122
            +  
Sbjct: 118 QLRR 121


>gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1798

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    V++MDI + E+ G
Sbjct: 1676 QKVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1735

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T  I+   +   +P++A+TA AMKGD E+  + G   Y++KP+     +  ++ ++ 
Sbjct: 1736 YATTSAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLAVMEGWMS 1795

Query: 122  E 122
            +
Sbjct: 1796 Q 1796


>gi|256395913|ref|YP_003117477.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362139|gb|ACU75636.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 233

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ KV++V+D    ++  R  +    Y  +   +G  AL +A +  PD++++D+ L ++ 
Sbjct: 1   MMIKVLVVDDEPQLLRALRINLTARKYEVVTAIDGTSALAIAARTLPDLVVLDLGLPDLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K ++      E+P++ ++  A   D+      G + Y++KP S+   +  ++   
Sbjct: 61  GAEVIKGLR---GWTEVPIVVLSGRADASDKVEALDAGADDYLTKPFSMEELLARLRVAR 117

Query: 121 GEA 123
             A
Sbjct: 118 RHA 120


>gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czccba [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Cupriavidus
           taiwanensis LMG 19424]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED           +  SG++    R+G + L  AR+H  D+I++D+ L  + G E
Sbjct: 2   RILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +   ++ PV+ +TA     D  +  + G + Y+ KP + +  +  I+  +  
Sbjct: 62  VLRELRRE---RDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRR 117


>gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 241

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++++ED+     L R  ++++ Y      NG + L+  + + PD++I+D+ L +I G
Sbjct: 1   MKNILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGLKFYKSNHPDLVILDLSLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EI + I++  E    P+  ++A   + D     + G + YI+KP S+      +  +  
Sbjct: 61  MEICRSIRKSDE--STPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
 gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
          Length = 1356

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++ EDN    +     +  + Y  ++  NG E +E A +  PD+II DI + +  G E
Sbjct: 1103 TVLVTEDNSELRQFIASELIGT-YRVIEATNGAEGIERAIKQLPDLIITDIMMPQTDGFE 1161

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +   ++ +     IP+I ++A A    + +  + G + Y++KP S    +  ++  IG 
Sbjct: 1162 LVNTLRNNPATSHIPIIILSAKASPESKLKGLEIGSDDYLTKPFSSKELLLKVRNIIGR 1220


>gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K++IV+D+    +L    ++  GY  +   +G EA+   R + PD  +II+DI + +++G
Sbjct: 2   KILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTN-PDIGLIILDIMMPDMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K++++D+    +P++ ++A +   D+ +    G + Y++KP +    M  ++  + 
Sbjct: 61  TEVLKEVRKDNP---VPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|329909927|ref|ZP_08275148.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546366|gb|EGF31380.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 204

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 54/119 (45%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ +  D ++ +GY+ L   +G  ALE      P +I++D  +  + G E 
Sbjct: 11  ILIVDDVPDNLAVLSDALDEAGYLVLVATDGAGALERLGYVTPHLILLDAVMPGMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+       IPVI +T         R  + G   Y+ KP+     +  I   +  A
Sbjct: 71  CRRIRALPGASHIPVIFMTGLTETEHVVRGFEVGGNDYVIKPLQPREVIARIVAQLRSA 129


>gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 233

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED +    L R +++   +      +G+  LELA     D +++D+ L E+ G E
Sbjct: 2   HILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVMLPELDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++ D+ +   PV+ +TA     D       G + Y+ KP ++   +  +   +  
Sbjct: 62  ICRRMRTDNVMS--PVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRR 118


>gi|296268830|ref|YP_003651462.1| response regulator receiver protein [Thermobispora bispora DSM
           43833]
 gi|296091617|gb|ADG87569.1| response regulator receiver protein [Thermobispora bispora DSM
           43833]
          Length = 125

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+E+  +L    +   G+      +G + L+      PDVI +D+ +  + G
Sbjct: 1   MGRVLVVDDDEVIRQLIAVNLTLEGFEVATACDGQDCLDRVHDIDPDVITLDVMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E   +++ D   + I V+ +TA A + D  R    G +AY++KP   +  ++ +++ 
Sbjct: 61  WETATRLRSDPSTRHIKVVLITARAQEEDRRRGLGIGVDAYVTKPFDPAELIQIVREL 118


>gi|256391218|ref|YP_003112782.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256357444|gb|ACU70941.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 236

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++++V+D    +   R  +   GY      +G   L +A +  PD++++D+ L ++ G
Sbjct: 1   MKRLLVVDDEAQLLVAVRINLSARGYEVSVAPDGTTGLAVAARRPPDLVVLDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++   ++       +P++ ++      D+      G + +++KP  +      ++  + 
Sbjct: 61  VQVIDGLR---GWTTVPILVLSGRTESWDKVEALDAGADDFVTKPFDMDELAARVRSLLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED           ++ +G+  L+   G EAL++   H  DV ++D+ L  I G
Sbjct: 4   MSTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTVDVALLDVMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I+E++  +++ +I +TA    GD  +    G + YI+KP S       I+  + 
Sbjct: 64  FQVCKTIREEN--KKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|182415664|ref|YP_001820730.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177842878|gb|ACB77130.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 378

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 63/119 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+D+ LN+++   +++T GY      +G  ALEL  + +PD++++D+ +  ++G 
Sbjct: 13  RKILVVDDDRLNIRILSGILKTQGYALADADSGERALELYPEFRPDLVLLDVVMPGLNGF 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E  +++K+       P++ +TA     D       G   Y+ KP      +  I+ ++ 
Sbjct: 73  ETCRKLKDTYGDACAPIVFITAKNESDDVVEGFSAGGVDYLPKPFQAKEVLVRIQTHLR 131


>gi|146342170|ref|YP_001207218.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194976|emb|CAL79001.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain (modular protein)
           [Bradyrhizobium sp. ORS278]
          Length = 1319

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +DN         L+    Y      +G+ ALE  R+ +PD+++ D+ +  + G  
Sbjct: 666 RVVLADDNSDMRDYVCRLLGDD-YEVEAVADGVAALETVRRRRPDLVLTDVMMPRLDGFG 724

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK-----K 118
           + K ++ D + ++IPV+ ++A A +  +      G   Y+SKP S    +  ++      
Sbjct: 725 LLKALRSDPQRRDIPVVILSARAGEEAKVEGLDAGASDYLSKPFSARELLARVRVNIDLA 784

Query: 119 YIGEA 123
            +  A
Sbjct: 785 RVRRA 789



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 13/121 (10%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62
            V++VEDN    +    L+E  GY  +  R+G++AL L   +    D+++ D+ +  + G+
Sbjct: 1194 VLVVEDNPEIGEFSTQLLEDLGYRTVLARSGLDALRLIEDNPDGFDLVLSDVVMPGMDGV 1253

Query: 63   EITKQIKEDSELQEIPVIAVTAFAM---KGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             + ++I+    L  IP++  + ++     GD            I KP S+      +++ 
Sbjct: 1254 TLGQEIRR--RLPTIPIVLNSGYSDVLADGDR-HGFSL-----IHKPYSVDELSRVLRQV 1305

Query: 120  I 120
            +
Sbjct: 1306 M 1306


>gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1223

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDNELN +     +E  G+  +   +G E L++  +   D+++MDIQ+  ++G+E
Sbjct: 1100 RILLAEDNELNREFLTIFLEEGGHSVVTACDGYEVLDILHREHVDLVLMDIQMPRMNGME 1159

Query: 64   ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T+ I+   E    +PVIA+TA +M GD +R    G   ++ KP+  +     I +
Sbjct: 1160 ATRSIRSSGEAWSTVPVIALTAHSMAGDRDRFIAEGMSDFVGKPVDRNELHAAIAR 1215


>gi|91778882|ref|YP_554090.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
 gi|91691542|gb|ABE34740.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
          Length = 1194

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + +++ ED+  N+     ++E  G      RNG EAL+         +I+MDI + E+ G
Sbjct: 1073 RTILLAEDDVRNIFALSHVLEPLGAKLQIARNGREALDALENGPEVHLILMDIMMPEMDG 1132

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            L    +I+ +     +P+IA+TA AM  D  R  + G + Y+SKPI +   +   + ++ 
Sbjct: 1133 LTAMGEIRRNPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLR 1192

Query: 122  E 122
            +
Sbjct: 1193 Q 1193



 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    ++ RDL     +  +   +    L L R  +P  +++D+ L + SGL +
Sbjct: 807 IVAVEDDVAFAEILRDLTHELDFDFVHASDAASGLALVRDMRPAAVLLDVGLPDRSGLTV 866

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            + +K D   + IP+  V+A       ++    G   Y  KP + S     I++ 
Sbjct: 867 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 918



 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 47/94 (50%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V+++ED+    +  R L+++     +      EAL+   +   D ++ D+ L + +G 
Sbjct: 927  KRVLVIEDDTPMRESIRALLQSENTEIVAVATLAEALDYLAKVTFDCVVTDLALPDGTGY 986

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            ++ +++  ++    +PVI  T   +  +EE   +
Sbjct: 987  DLLERLAANTAHVSLPVIVYTGRMLSDEEEHRLR 1020


>gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8]
 gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++VED      L  + ++   +      +G E + +A     DV+I+DI L    
Sbjct: 1   MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G EI K ++E       PV+ +TA +      +    G + Y+ KP  L   +  ++  I
Sbjct: 61  GWEILKSMRESGV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALI 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|83311738|ref|YP_422002.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946579|dbj|BAE51443.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 638

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDN  N K+   L+   G+      NG+EAL+  +    D+I+MD+Q+ E+ G E 
Sbjct: 403 ILLAEDNIFNQKVAAGLLNREGHRVTVACNGLEALDKLQDENFDLILMDMQMPEMDGPEA 462

Query: 65  TKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++I+     +  IP+IA+TA AM  D  R R  G + +++KPI   +    I + +
Sbjct: 463 TRRIRAMPGPVASIPIIALTANAMAVDVARCRAAGMDGHVAKPIDPLLLRSAIAEVL 519


>gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+ VED+++  +  +  +E  G+      +G++ LE  R   PD+ ++D+ +  + G+
Sbjct: 11  ARVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGV 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+++S    +PVI ++A A   D     + G + Y++KP  +S+ +  ++  +  
Sbjct: 71  SLCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127


>gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED     +L    +   G+      +G    E A  H+ D+I++D+ L  ++G +I 
Sbjct: 2   LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVMLPGMNGFQIL 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++++        P+I +TA   + +  +  K G + YI+KP  +S  +  +   +  
Sbjct: 62  EKLRGSGIT--TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 116


>gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
 gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
          Length = 1055

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DN +N K+    +  +G+      NG EA+++ +Q++  +I+MD  +  + G E
Sbjct: 773 KILVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQQNQYCLILMDCMMPVMDGFE 832

Query: 64  ITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            TK I++         +IP+IA+TA  +  D ++    G + Y+ KP    +  E + K 
Sbjct: 833 ATKMIRQIEAKEKRTVKIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAGLLKEKLDKA 892

Query: 120 IG 121
           IG
Sbjct: 893 IG 894



 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            ++++VEDN +N K+   L+  +GY      NG  A+E+ ++    D+I+MD  +  + G 
Sbjct: 935  RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVEMFQKDGGFDIILMDCMMPIMDGF 994

Query: 63   EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E ++QI+       L + P+IA+TA  +  D +R    G +AY+ KP+     +  I+  
Sbjct: 995  EASRQIRAYEASKGLPKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRREKLLYQIENA 1054

Query: 120  I 120
            I
Sbjct: 1055 I 1055


>gi|256830761|ref|YP_003159489.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579937|gb|ACU91073.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 377

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 65/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D  LN++L   +++ +GY  L   +G EA  LA +H PD+I++D+ + +  G   
Sbjct: 12  ILIVDDEPLNIRLLDIVLKKNGYRTLSCTSGPEARALAAEHSPDLILLDVLMPDEDGYAT 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +K+ S+  +IP+I ++A      + R  + G   +ISKP   +  +  +K ++
Sbjct: 72  CALLKQQSQTSDIPIIFISALTDTSSKVRGLEVGGVDFISKPFEKAEVLARVKVHL 127


>gi|160873992|ref|YP_001553308.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS195]
 gi|160859514|gb|ABX48048.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS195]
 gi|315266221|gb|ADT93074.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella baltica OS678]
          Length = 338

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   N+ +   ++    Y      +G  AL L  + +PD+I++D+ +  ++G 
Sbjct: 4   ATILVVDDTPENIDILIGILGDD-YKVKVAIDGPRALALVAKSRPDLILLDVMMPGMNGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K+D     IP+I VTA +   DE +    G   YI+KP+S  +    +K ++
Sbjct: 63  EVCKLLKQDPLTSHIPIIFVTALSESSDEAQGFALGAVDYITKPVSAPVVKARVKTHL 120


>gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|17989005|ref|NP_541638.1| response regulator PleD [Brucella melitensis bv. 1 str. 16M]
 gi|23500354|ref|NP_699794.1| response regulator PleD [Brucella suis 1330]
 gi|161620672|ref|YP_001594558.1| response regulator PleD [Brucella canis ATCC 23365]
 gi|163844762|ref|YP_001622417.1| response regulator PleD [Brucella suis ATCC 23445]
 gi|225686396|ref|YP_002734368.1| response regulator PleD [Brucella melitensis ATCC 23457]
 gi|254699847|ref|ZP_05161675.1| response regulator PleD [Brucella suis bv. 5 str. 513]
 gi|254702985|ref|ZP_05164813.1| response regulator PleD [Brucella suis bv. 3 str. 686]
 gi|256015387|ref|YP_003105396.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915]
 gi|256043507|ref|ZP_05446434.1| response regulator PleD [Brucella melitensis bv. 1 str. Rev.1]
 gi|256262463|ref|ZP_05464995.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str.
           63/9]
 gi|260564702|ref|ZP_05835187.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260568102|ref|ZP_05838571.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261750320|ref|ZP_05994029.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 5 str. 513]
 gi|261753594|ref|ZP_05997303.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 3 str. 686]
 gi|265989925|ref|ZP_06102482.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|294853592|ref|ZP_06794264.1| two-component system response regulator [Brucella sp. NVSL 07-0026]
 gi|17984843|gb|AAL53902.1| response regulator protein [Brucella melitensis bv. 1 str. 16M]
 gi|23463971|gb|AAN33799.1| response regulator/GGDEF domain protein [Brucella suis 1330]
 gi|161337483|gb|ABX63787.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
 gi|163675485|gb|ABY39595.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
 gi|225642501|gb|ACO02414.1| GGDEF domain protein [Brucella melitensis ATCC 23457]
 gi|255998047|gb|ACU49734.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915]
 gi|260152345|gb|EEW87438.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260154767|gb|EEW89848.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261740073|gb|EEY27999.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 5 str. 513]
 gi|261743347|gb|EEY31273.1| response regulator receiver modulated diguanylate cyclase [Brucella
           suis bv. 3 str. 686]
 gi|263000594|gb|EEZ13284.1| response regulator receiver modulated diguanylate cyclase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092199|gb|EEZ16496.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str.
           63/9]
 gi|294819247|gb|EFG36247.1| two-component system response regulator [Brucella sp. NVSL 07-0026]
 gi|326410768|gb|ADZ67832.1| response regulator PleD [Brucella melitensis M28]
 gi|326554060|gb|ADZ88699.1| response regulator PleD [Brucella melitensis M5-90]
          Length = 461

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI +T      D+ R  + G E ++SKP++    +  +K   
Sbjct: 61  GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 86.7 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+++EL     R ++    Y      +   AL  A +   D II+         L
Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++  Q++     + IP+I +          R  + G   Y+ +P+        ++  I  
Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278


>gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25]
          Length = 1059

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DN +N K+    +  +G+      NG EA+++ +Q++  +I+MD  +  + G E
Sbjct: 777 KILVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQQNQYCLILMDCMMPVMDGFE 836

Query: 64  ITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            TK I++         +IP+IA+TA  +  D ++    G + Y+ KP    +  E + K 
Sbjct: 837 ATKMIRQIEAKEKRTVKIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAGLLKEKLDKA 896

Query: 120 IG 121
           IG
Sbjct: 897 IG 898



 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            ++++VEDN +N K+   L+  +GY      NG  A+E+ ++    D+I+MD  +  + G 
Sbjct: 939  RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVEMFQKDGGFDIILMDCMMPIMDGF 998

Query: 63   EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E ++QI+       L + P+IA+TA  +  D +R    G +AY+ KP+     +  I+  
Sbjct: 999  EASRQIRAYEASKGLPKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRREKLLYQIENA 1058

Query: 120  I 120
            I
Sbjct: 1059 I 1059


>gi|332527238|ref|ZP_08403306.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111658|gb|EGJ11639.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 766

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ EDN +N ++ + ++E +G +     +G+ A+++A      +++MD+Q+  + GL
Sbjct: 639 ARVLLAEDNPVNAEVAQAILEEAGLVVEVAEDGVAAVDMALARDYRLVLMDMQMPGLDGL 698

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
           +  + I+       +PVIA+TA A   D+ R +  G + ++SKP+      + + +++ G
Sbjct: 699 DACRAIRRRHPAGTLPVIAMTANAFAEDKVRCQAAGMDDFLSKPVDPLALYQLLLRWLDG 758

Query: 122 EA 123
            A
Sbjct: 759 RA 760


>gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D      L R+ +   G+   +  N  +AL +  +  PD +I+D+ L  + G  +
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++E     E PV+ +TA     D+      G + Y++KP SL   +  ++  +  A
Sbjct: 76  LRRVREMGT--ECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRA 132


>gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1046

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           +V+ V+D+ +N+++  +L+  +G   +   +  EAL+L   + + D++I D  + E+SG+
Sbjct: 714 RVLAVDDDGVNLRVLEELLYATGCSVVAVDHAEEALQLLNGRARFDLVITDWMMPEMSGI 773

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++I+E   L E+PV+ +TA  + GD       G   ++ KP+        ++  +
Sbjct: 774 ELCRRIREGYSLSELPVLLLTARDLPGDIHAGFMAGANDFLRKPVDAEELKARVRTLL 831


>gi|293370623|ref|ZP_06617175.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292634357|gb|EFF52894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1339

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVED+E              +  +++RNG EALE   +  PD++I DI + E+ G  
Sbjct: 1084 HVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGFT 1142

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK++  L  IPVI +T+   + D       G +AYI KP ++ I  +T++  I
Sbjct: 1143 LCRKIKQNVNLNHIPVILLTSKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199


>gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
 gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2]
 gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+ +VED+     L +  ++  GY  +   +G  ALE   +H  D +I+D+ L  + GL
Sbjct: 5   KKIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++I++ S    +PVI ++A   +       + G + Y++KP S+   M  +K     
Sbjct: 65  EICRRIRQMSFY--LPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRR 122


>gi|224537465|ref|ZP_03678004.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520903|gb|EEF90008.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1390

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN+      R L+    Y   +  +G EALE+ ++H  D+I+ D+ +  + G+E
Sbjct: 1140 TILIVEDNKDMRSYIRTLLVGD-YRLFEAGDGQEALEIVQKHTVDLIVSDLMMPVMDGME 1198

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++IKE+     IP + +TA      E+R  + G + Y+ KP    +    I+  +
Sbjct: 1199 LSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNIL 1255


>gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++D    ++L    +   GY   +  NG + + +  + K  V+++D+ +  I G ++
Sbjct: 4   VLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++D     IP+I ++A +   D+ +    G + Y+ KP +    +  +K  I  
Sbjct: 64  CMKIRKD---YNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRR 118


>gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
 gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
          Length = 850

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 1/122 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KV++VED  +N K+ + ++E  G   +   NG   +++ ++H  D+I MD Q+  + G 
Sbjct: 716 AKVLVVEDTVVNQKVAKMMLEKLGVEVMIASNGQIGVDMYQEHDFDIIFMDCQMPVLDGF 775

Query: 63  EITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E TK I+   +    IP+IA+TA  +K ++++  + G + ++SKP+S  +    ++K++ 
Sbjct: 776 EATKAIRNLEQNTSHIPIIALTANVVKEEKDKCYEAGMDDFVSKPVSKKVLSAVMEKHLA 835

Query: 122 EA 123
            A
Sbjct: 836 IA 837



 Score = 80.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59
           V++V+D+ LNM++    +   G   +   +  +A+++ +Q        D++I+D  +  +
Sbjct: 493 VLLVDDSMLNMRITSAQLNNFGAKTICCDDATQAIDIVKQAIVNKSPFDLVIIDKIMPHL 552

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ + + ++  L    ++ ++A    GD+ + ++ G  A +S+P   S    T+K+ 
Sbjct: 553 DGFELAQLLTKELGLDCPRLMMISAGPQMGDDLKAKQVGILACLSRPYKESNLKWTVKRV 612

Query: 120 I 120
           I
Sbjct: 613 I 613


>gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
 gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
          Length = 223

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+       +  +  SGY     R G + L +A ++  D++++D+ L  I G EI
Sbjct: 3   ILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGWEI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++     +++PVI +TA     D  R  + G + Y+ KP S +  +  I+  +  
Sbjct: 63  MRALRAR---RDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRR 117


>gi|34557245|ref|NP_907060.1| two-component hybrid sensor and regulator [Wolinella succinogenes
           DSM 1740]
 gi|34482961|emb|CAE09960.1| TWO-COMPONENT HYBRID SENSOR AND REGULATOR [Wolinella succinogenes]
          Length = 379

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M  K  +++++D E N+ +   +++   Y  +   +G EALE+ +  K D+I++DI + E
Sbjct: 1   MSHKPTILVIDDTESNLDMLMAILK--NYDVIPALSGKEALEIVKNEKIDLILLDIMMPE 58

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E+ +++K +   + IP+I +TA   +   E     G   Y++KP      +   K 
Sbjct: 59  MDGYEVCRRLKSEEATRSIPIIFITAKTDEESIELGYSIGGIDYVTKPFKPRELLARAKT 118

Query: 119 YI 120
            +
Sbjct: 119 QL 120


>gi|332994428|gb|AEF04483.1| two-component system response regulator (hybrid family) protein
           [Alteromonas sp. SN2]
          Length = 364

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N+ L + ++    Y       G  AL++  Q  PD+I++DI +  I G E+
Sbjct: 14  ILVVDDEPANIDLLQGILSPY-YQVKVAPTGHIALKVVEQFTPDLILLDIMMPGIDGHEV 72

Query: 65  TKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +QIK        L ++P+I VTA     DEE+  + G   YI+KPIS ++ +  +K +I
Sbjct: 73  CRQIKTSPALAPRLAKVPIIFVTALGQGQDEEKGFELGAVDYITKPISPALVLARVKTHI 132


>gi|329960128|ref|ZP_08298592.1| response regulator receiver domain protein [Bacteroides fluxus YIT
            12057]
 gi|328533080|gb|EGF59853.1| response regulator receiver domain protein [Bacteroides fluxus YIT
            12057]
          Length = 1343

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN+   +  R+ +  + Y      NG  AL +A+++ P++II DI + E+ G E
Sbjct: 1082 KILIVEDNDELREYLRNTLSET-YHIQVCSNGKMALTIAKEYLPNLIISDIMMPEMRGDE 1140

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-GE 122
            + K +K D E   IP+I +TA     +     + G + YI KP ++ I   TI   +   
Sbjct: 1141 LCKALKNDIETSHIPIILLTALNTDKNIIEGLETGADEYIVKPFNIGILRATIANLLNNR 1200

Query: 123  A 123
            A
Sbjct: 1201 A 1201


>gi|326794734|ref|YP_004312554.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326545498|gb|ADZ90718.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED     +L    +E +GY       G   ++  + ++ D+I++D+ L  + G
Sbjct: 1   MSKVLIVEDEPKLAELMSAYLEQAGYEHHHLERGDIVVDYVKSNQVDLILLDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ KQ+++      IP+I VTA A + D     + G + Y+ KP S    +  +K  + 
Sbjct: 61  IEVCKQVRQ---FSGIPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREVVARVKANLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 227

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D     +L     +  G+   +  +GMEA+EL  ++  D+++MDI +  + G
Sbjct: 1   MTKILIVDDEAKIRELIIKYAKHEGFETAEAADGMEAVELCEKNNYDLVVMDIMMPHLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+IK+     ++P I ++A   + D       G + Y+ KP S    M  I   + 
Sbjct: 61  FSAVKEIKKTK--PQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
            11-1]
 gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
            11-1]
          Length = 1046

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 64/117 (54%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VED+  N+     ++E  G      RNG EALE   + + D+++MDI + E+ GL   
Sbjct: 929  LLVEDDVRNIFALSSVLEPLGVRLEIARNGREALETVGRQEFDLVLMDIMMPEMDGLTAM 988

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ + + Q++P+IA+TA AM  D E     G   YI+KP+ +   +   + +   
Sbjct: 989  REIRRNPQWQDLPIIALTAKAMADDRENCLAAGANDYIAKPVDVDKLISLCRVWCAR 1045



 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED+    +    L     +  +      E L LA + +P  I++DI L ++SGL +
Sbjct: 660 ILVIEDDADFAQAMVALAHELEFDCVVAGTAEEGLALAAKLQPSGILLDIGLPDVSGLSV 719

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++K D   + +PV  V+A  M+  +    + G   Y+ KP +       I++ 
Sbjct: 720 LERLKRDPATRHLPVHVVSA--MERSQV-ALELGAVGYLIKPATRERLASAIRQL 771



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++IVED+       + L+       +      +A+    +   D ++ D+ L + SG
Sbjct: 779 MRRLLIVEDDRDLRANLQLLLARDQLEIVAVGTIADAIAELDRSTFDCMVTDLSLPDGSG 838

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            ++ +++         PVI  T  A+  DEE+  +
Sbjct: 839 YDLLERMSGSETGAFPPVIVYTGRALTRDEEQRLR 873


>gi|298375583|ref|ZP_06985540.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. 3_1_19]
 gi|298268083|gb|EFI09739.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. 3_1_19]
          Length = 826

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVEDN         L+  + Y  +  +NG E LE+A +  PD+I+ D+ + E+ 
Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIAAEQMPDLILTDLMMPEMD 683

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++E   L  IP+I +TA +   +     + G +AY+ KP +       I K +
Sbjct: 684 GYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKLL 743

Query: 121 GE 122
            +
Sbjct: 744 EQ 745


>gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
            SL3/3]
          Length = 1079

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59
            K +++VEDNELN ++ ++++   G++     NG  A+E      P   D+++MD+Q+  +
Sbjct: 957  KHILLVEDNELNREIAQEILREYGFLVDSAENGAVAVEKVSTAAPGSYDLVLMDVQMPIM 1016

Query: 60   SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             G   T++I+   D    ++P++A+TA A   D     + G   ++SKPI +   ++ ++
Sbjct: 1017 DGYTATRKIRALDDPARAKLPILAMTANAFDEDRRNALESGMNGFLSKPIVIDDLVQELR 1076

Query: 118  KYI 120
            K +
Sbjct: 1077 KIL 1079



 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           K ++V+D+         ++   G  A  T +G EA+  ARQ           I+D +L +
Sbjct: 816 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDVYHAYIIDWRLPD 875

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+E+T+QI+   +  + P+I +TA+     E   +  G  A+ +KP+ +S   ET+  
Sbjct: 876 MNGIEVTRQIRSLHD--DTPIIILTAYDWSDIEVEAKAAGVTAFCAKPMFMSDLRETLMS 933

Query: 119 YIGE 122
            +G+
Sbjct: 934 ALGQ 937


>gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis
           str. Paraca]
          Length = 587

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D++   +     ++   Y+     +G          +  ++I+DI L +++G+ 
Sbjct: 2   KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++  +   ++PV+ +TA     D+      G + Y+ KPI     +  ++  +  A
Sbjct: 62  LCRKLRSHN--YQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119



 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 48/101 (47%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++ + D+   ++L   L+   G          +  ++     PD++I+D+++   +G++
Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104
           + + I+ +   + +P++ +T          + + G + +IS
Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFIS 587



 Score = 50.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ--EISGLE 63
           +IV+ + +  +       + G  A        A  +  +++P +I++++     E  GL 
Sbjct: 365 LIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGLM 424

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + + I       EIPV+  +  +   D   + + G  A++ KP+S    ME +
Sbjct: 425 LLEDI--AYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIV 475


>gi|254711121|ref|ZP_05172932.1| response regulator PleD [Brucella pinnipedialis B2/94]
 gi|256029502|ref|ZP_05443116.1| response regulator PleD [Brucella pinnipedialis M292/94/1]
 gi|261318712|ref|ZP_05957909.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis B2/94]
 gi|265986510|ref|ZP_06099067.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis M292/94/1]
 gi|261297935|gb|EEY01432.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis B2/94]
 gi|264658707|gb|EEZ28968.1| response regulator receiver modulated diguanylate cyclase [Brucella
           pinnipedialis M292/94/1]
          Length = 462

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI +T      D+ R  + G E ++SKP++    +  +K   
Sbjct: 61  GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 3   KKVMIVE-DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            ++++V+ D        R ++    Y      +   AL  A +   D II+         
Sbjct: 160 ARILVVDEDELAAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDP 218

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++  Q++     + IP+I +          R  + G   Y+ +P+        ++  I 
Sbjct: 219 LKLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIK 278

Query: 122 E 122
            
Sbjct: 279 R 279


>gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+      +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKALRSRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254513977|ref|ZP_05126038.1| two-component response regulator [gamma proteobacterium NOR5-3]
 gi|219676220|gb|EED32585.1| two-component response regulator [gamma proteobacterium NOR5-3]
          Length = 123

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 65/117 (55%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VEDNELN  +    ++ +G+ AL   +G +AL      +P ++++D+ L  + G  + 
Sbjct: 7   LLVEDNELNRDMLSRRLKRAGFEALIAEDGAKALASIESERPALVLLDMNLPVMDGWSVC 66

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++   EL   P+IA+TA AM  D +R  + GC+ Y +KPI     +E I + +  
Sbjct: 67  RAVRAKPELAHTPIIALTAHAMAEDRDRALEAGCDDYATKPIDFPALLEKIARLLER 123


>gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1101

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VED+ +     R ++E +G+      +G   L        D+++MDIQ+  + G+E
Sbjct: 973  RILLVEDDPVTQLAVRRMLEKAGHTVTVAGDGRAGLNALAGGSFDMVLMDIQMPTMDGME 1032

Query: 64   ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               +I++     +   IP++A+TA+AM+GD ER    G +AY +KP  +      I +  
Sbjct: 1033 AVARIRKGEAGPDRAGIPIVALTAYAMEGDRERFMGAGMDAYATKPTDMDTLHAVIGRLC 1092

Query: 121  GE 122
            G+
Sbjct: 1093 GQ 1094


>gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056]
 gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058]
 gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059]
 gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 319

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ L  + ++ +GY  L T +G+ A+E+A +  PD+I++D  +  + G E 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+K     Q IPVI +T  +      R  + G   Y++KP+++   +  +K ++  A
Sbjct: 79  CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137


>gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 234

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEI 59
           M  +++I++D++    L RD  E S         G++ ++      P D++++DI L +I
Sbjct: 1   MTHRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E  K+I+  S+   +PVI +TA   + D     + G + Y+ KP +    +  IK  
Sbjct: 61  DGFETLKKIRAISQ---VPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAV 117

Query: 120 IGEA 123
           +  A
Sbjct: 118 LRRA 121


>gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D +    L    ++  GY  LQ  +G E L +  +++  ++++DI + ++ G+ 
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIH 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E    +E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 65  MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 120


>gi|332709992|ref|ZP_08429948.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332351363|gb|EGJ30947.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1738

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N +L   L++  GY A    NG+E L+   +   D+++MD+Q+ E+ GL 
Sbjct: 1484 RILLAEDNIVNQQLALQLLKRMGYRADVAGNGLEVLQALSRQPYDLVLMDVQMPEMDGLT 1543

Query: 64   ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T++I E         +IA+TA AM+GD E     G + YISKPI +   +  + +
Sbjct: 1544 ATQRICEQWPAHLRPWIIAMTANAMEGDREMCLSAGMDDYISKPIQVPELVRALSQ 1599



 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            K+++IV+D+  N  +  +  ++ G +     +G EAL+   Q  K D+ I+D  + E+ G
Sbjct: 1338 KRLLIVDDSATNRTIISEQAKSWGMLTQTAASGREALDWLSQGDKFDIAILDGYMPEMDG 1397

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +  +I++ SE Q +P++ +++      +    +    A ++KPI  S   + + + +
Sbjct: 1398 FTLATKIRQQSEGQALPLVMLSSMNQSDTKHHQSQLDIAAVLNKPIKQSQLHDVLTQVM 1456


>gi|322806627|emb|CBZ04196.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+     + ++ +   GY   Q  +G+EA+E  +     ++IMD+ +  + G+E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGENYHMVIMDVMMPVMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+E S+   +P+I ++A     D+      G + YI KP S+   +  +K  I  A
Sbjct: 65  SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELVARVKCNIRRA 121


>gi|255690627|ref|ZP_05414302.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260623650|gb|EEX46521.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1353

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 3    KKV-----MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
            K++     +IVEDNE   ++   + ET  Y      +G EALE  R+  P +I+ D+ + 
Sbjct: 1089 KRIEDAKMLIVEDNESIKQMLVSIFETF-YQVTTASDGEEALEKVREEMPSIILSDVVMP 1147

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             +SG E+ K+IK D     IPV+ +TA           K G + YI+KP + ++ +    
Sbjct: 1148 RMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCN 1207

Query: 118  KYI 120
              +
Sbjct: 1208 NLV 1210


>gi|255013833|ref|ZP_05285959.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_7]
          Length = 878

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVEDN         L+  + Y  +  +NG E LE+A +  PD+I+ D+ + E+ 
Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIAAEQMPDLILTDLMMPEMD 683

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++E   L  IP+I +TA +   +     + G +AY+ KP +       I K +
Sbjct: 684 GYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKLL 743

Query: 121 GE 122
            +
Sbjct: 744 EQ 745


>gi|226315460|ref|YP_002775356.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226098410|dbj|BAH46852.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 1024

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 61/117 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+D+ +N+ +   ++E+  Y      +  +AL +  ++  D++I D+ +  +SG 
Sbjct: 697 ARIIVVDDDSINLNILSKMLESDQYEVSTATSAQQALSILERNPVDLVISDVMMPHVSGY 756

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E+T+ I+E   + E+PV+ +TA +   D     + G   Y+ KP+        +K  
Sbjct: 757 ELTRIIRERFSVLELPVLLLTARSRSEDIIAGFQAGANDYVKKPVDAWELKARVKAL 813


>gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47FAA]
          Length = 234

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  K+++V+D +  + L  +++   G+  +Q   NG +AL++ R  +PDVI++DI L +I
Sbjct: 1   MENKILLVDDEKDIVDLVEEVLRKEGFRVIQKAYNGTDALKICRDFQPDVIVLDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+ +QI++ S      ++ +++     D+      G + Y++KP S    +  IK  
Sbjct: 61  DGLEVCRQIRQFSYCS---ILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQ 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA2]
 gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA3]
 gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL097PA1]
 gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL099PA1]
 gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266]
          Length = 226

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+I+ED E   +    ++   G+      NG + LE+   +  D++++D+ +  + G
Sbjct: 1   MTRVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGADIVLLDLMMPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+++      + +I VTA   + D+    + G + Y++KP S    +  I+    
Sbjct: 61  TEVCRQLRQRG---NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|251795843|ref|YP_003010574.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543469|gb|ACT00488.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           KKV++VED+  N+    + +E          NG   ++L + +K  D+++MDI +  + G
Sbjct: 766 KKVLLVEDDARNVFALVNALENKKMQVTVAGNGRACMDLLKDNKDFDLVLMDIMMPLMDG 825

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  +++++  ELQ +P+IA+TA AMK D ++  + G   YISKP+ +      ++ ++
Sbjct: 826 YETMREMRKQPELQAMPIIALTAKAMKSDRDKCLEAGASDYISKPLQMDQLYSLMQVWL 884


>gi|167630674|ref|YP_001681173.1| two-component system sensor protein [Heliobacterium modesticaldum
           Ice1]
 gi|167593414|gb|ABZ85162.1| two-component system sensor protein [Heliobacterium modesticaldum
           Ice1]
          Length = 305

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           V++VEDN +N+K+ R  ++  G        NG EA++LARQ++  +I+MD Q+  + G  
Sbjct: 31  VLVVEDNPINLKMIRSQLKQLGIDMIHTAVNGNEAVQLARQNQYGLILMDCQMPVMDGYS 90

Query: 64  ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T  I+ +  +    P++AVTA A+ GD E+  + G + YISKP+ L    E ++ ++
Sbjct: 91  ATALIRANEGQETHTPIVAVTAHALPGDREKCLEAGMDDYISKPVRLQRLFEALQCWL 148


>gi|157375725|ref|YP_001474325.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318099|gb|ABV37197.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 230

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED     +L  D +  S +   Q   G E L     H  D+I++D+ L  + GL
Sbjct: 7   KQILIVEDELKLAQLLADYLCDSSFEPHQLHRGDEVLGWLASHPCDLILLDLMLPGLDGL 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ KQI++ S    IP+I +TA   + D     + G + YI KP S    +  +K  I  
Sbjct: 67  EVCKQIRQHS---NIPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVIRR 123


>gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 224

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +     +  +GY+  +  +G E   L      D +++DI L ++ G+ 
Sbjct: 2   RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +  + +   + +PV+ +TA     D+ +    G + Y++KP  L   +  I+  +  +
Sbjct: 62  VLEAWRRNG--RAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRS 119


>gi|110834104|ref|YP_692963.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
 gi|110647215|emb|CAL16691.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
          Length = 714

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++M+VEDNE+N  + R ++   GY      NG  AL L  Q   D+++MD  + E+ G E
Sbjct: 584 RLMLVEDNEVNQLVTRGMLSKLGYQVKTVSNGETALALLEQEPFDLVLMDCMMPEMDGFE 643

Query: 64  ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++ +E    +     P++A+TA   +G + R    G + +++KP+ L      +++++
Sbjct: 644 ATRRQREMEHSKASPRTPIVAITANTAEGVQARCLAAGMDDFLAKPVHLDALETVLRRWL 703

Query: 121 GE 122
            E
Sbjct: 704 PE 705


>gi|28868014|ref|NP_790633.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851250|gb|AAO54328.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331018350|gb|EGH98406.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 254

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+          +    +      +     +L RQ   DV+++D+ L +  G E
Sbjct: 12  RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++        IPVI +TA     D  R    G + Y++KP      +  I   +  
Sbjct: 72  LCSRLHRRE---NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRR 127


>gi|56475527|ref|YP_157116.1| response regulator domain-containing protein [Aromatoleum
           aromaticum EbN1]
 gi|56311570|emb|CAI06215.1| Protein containing response regulator domain, but no DNA binding
           domain [Aromatoleum aromaticum EbN1]
          Length = 123

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 66/123 (53%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I +D +  +     L++  GY      +G EA+   R   PD++++D+ + + S
Sbjct: 1   MAKKILIADDEQNIVISLEFLMKREGYEVSIANDGEEAIARIRAELPDLVLLDVMMPKKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++IK D +LQ + V+ +TA     +  +    G +AY++KP S    +E ++  +
Sbjct: 61  GFEVCQEIKADPDLQSVRVLMLTAKGRDTEVAKGLALGADAYMTKPFSTKELVECVRSML 120

Query: 121 GEA 123
             +
Sbjct: 121 AAS 123


>gi|22536308|ref|NP_687159.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|77412156|ref|ZP_00788478.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|22533130|gb|AAM99031.1|AE014196_27 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|77161774|gb|EAO72763.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
          Length = 223

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDN +  K+    +   GY  +   NG EAL      +  +II DI +  + G
Sbjct: 1   MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++  S    +P+I +TA +   D  +    G + Y+ KP+ L      IK  + 
Sbjct: 61  YQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
 gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
          Length = 238

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IV+D E   KL    +E  GYI  +  NG + LE  +      +++D+QL  ++
Sbjct: 1   MAERILIVDDEERIRKLLVMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I  ++++    +  PVI ++A A +       + G + Y+ KP S    M  I   +
Sbjct: 61  GKSILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAIL 117

Query: 121 GE 122
             
Sbjct: 118 QR 119


>gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED           + + G+      +G  A++LA  ++PD+IIMDI L  + GLE 
Sbjct: 14  ILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAATYRPDLIIMDIMLPVMDGLEA 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           TK+I     ++ +P++ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 74  TKRI---VTMRPVPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRR 128


>gi|260662341|ref|ZP_05863236.1| response regulator [Lactobacillus fermentum 28-3-CHN]
 gi|260553032|gb|EEX25975.1| response regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 223

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ ED +   +     ++ +GY      NG EA++LA Q   DVII+DI + +++G+E 
Sbjct: 3   ILLAEDEKQLSRALVTAMQATGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGIEA 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            KQ+++     +  VI +TA A   D+    + G + Y++KP SL   +  ++     +
Sbjct: 63  LKQLRQTGN--KTYVIMLTAMAEIDDKVTGLEAGADDYLTKPFSLKELLARLRSLERRS 119


>gi|254784921|ref|YP_003072349.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685780|gb|ACR13044.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 300

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 64/120 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D E N+ L    +E  G+  +   NG E L+L  +  PD+I++DI++  ISG
Sbjct: 1   MTKVLVVDDVEDNIVLLTFELEDEGFEVIAAHNGRECLDLVHKEWPDIILLDIRMPGISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE  +Q+K D   ++IPV+ V+A        R    G   ++ KPI   +    ++  + 
Sbjct: 61  LETLEQLKADESTRDIPVVMVSANTGDNSIVRALDMGAHDFVCKPIEYPVLSARMRSALR 120


>gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ + E+ G E
Sbjct: 8   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   +  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 67  VIQKIR--DKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124


>gi|281420578|ref|ZP_06251577.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella copri DSM 18205]
 gi|281405351|gb|EFB36031.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella copri DSM 18205]
          Length = 1349

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IV+D+E   +  +   E   Y      NG +AL    +H   +II D  + E+ G E  
Sbjct: 1103 LIVDDDEDMRQFVKAHFEKM-YTVYTADNGKDALRKLEKHPVSLIISDWMMPEMDGPEFC 1161

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E+SE   +P + +TA      +      G + YI KP S+     ++++ +
Sbjct: 1162 RRVRENSEYSHLPFVMLTAKTDDAAKTESMNCGADVYIEKPFSMKYLEASVRQLL 1216


>gi|224538556|ref|ZP_03679095.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519824|gb|EEF88929.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1367

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++IVED E  +   ++ +E   Y  +  +NG EA +      PD++I DI + E+ GL 
Sbjct: 1116 RILIVEDEEEILSYLKEELEGD-YRIMTRKNGREAYDTILADTPDLVISDIMMPEMDGLS 1174

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK+++ +  +PVI +TA +   D       G +AY+ KP +  +   TI   +
Sbjct: 1175 LCRKIKQNTNVNHVPVILLTAKSKPEDTMEGMATGADAYMVKPFNTELLKSTIANLL 1231


>gi|218258768|ref|ZP_03475054.1| hypothetical protein PRABACTJOHN_00710 [Parabacteroides johnsonii DSM
            18315]
 gi|218225233|gb|EEC97883.1| hypothetical protein PRABACTJOHN_00710 [Parabacteroides johnsonii DSM
            18315]
          Length = 1333

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              KV+IVEDNE  +++   L     Y  +  RNG E L  A + KPD+++ D+ +  +SG
Sbjct: 1082 SYKVLIVEDNEELLQILNALFAPF-YQVILARNGEEGLRKANEEKPDLVVSDVMMPLMSG 1140

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +E+  +IK + +L  IPV+ +TA           + G + YISKP    + +      I 
Sbjct: 1141 MEMCMKIKNNIDLCHIPVVLLTALDSVEYNIEGLQQGADDYISKPFHAKVLLMRCNNLIR 1200


>gi|162295955|gb|ABX83925.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 349

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ SGY  L   +G  AL  ARQ  PD++++D  +  + G E+
Sbjct: 27  VLIVDDVPDNLSVLHDALDESGYTVLVATSGEAALNRARQAVPDIVLLDAMMPGMDGFEV 86

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121
            K++K  +E   IP+I +T            + G   Y++KPI     M  +  ++    
Sbjct: 87  AKRLKAMAETAHIPIIFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVMARMGVHLQGAR 146

Query: 122 EA 123
            A
Sbjct: 147 RA 148


>gi|311695306|gb|ADP98179.1| sensory box sensor histidine kinase/response regulator [marine
           bacterium HP15]
          Length = 783

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VEDN +N  L R L+E  G   +   +G  A  L + H  D++ MD  +  + G E
Sbjct: 658 KVLLVEDNPVNRTLTRRLLEKLGCDVMTANDGEAAASLWQWHPFDLVFMDCVMPRVDGFE 717

Query: 64  ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++++E  +      IPV+A+TA AM+ DEER R+ G +++++KP+++ +    +++Y
Sbjct: 718 ATRRLREWEKTHNRARIPVVALTASAMEEDEERCRRCGMDSFVAKPVNIEMLRAVLEQY 776



 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
           +++++V+  EL+ K+  +++          ++  EAL   R         D II+D  + 
Sbjct: 502 RRILVVDSYELSRKITLEMLSRHEVHIEAVKSAGEALTSLRTAFDGHQPFDAIILDGFVP 561

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++    + +QI+ +    ++ ++ +++   +GD E  R+ G +A++SK +  S     + 
Sbjct: 562 DMDSDLLCRQIRSNPLWSDMRLLILSSNPQRGDAEHFRQAGADAFLSKSLRESCLTPILN 621

Query: 118 KYIGEA 123
           +   +A
Sbjct: 622 QLFADA 627


>gi|294339068|emb|CAZ87417.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L    ++ +G       +G          + D+I++D+ L    GL 
Sbjct: 6   HILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++  S   +IPV+ +TA + + D     + G + Y++KP S    +  IK  +  A
Sbjct: 66  LCRQLRAKS---DIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRA 122


>gi|289623891|ref|ZP_06456845.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648450|ref|ZP_06479793.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486910|ref|ZP_07004964.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158575|gb|EFH99641.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330868308|gb|EGH03017.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 227

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L RD +  +GY      NG+E +   R   P +I++DI L    G++I
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAKPPQLILLDIMLPGRDGMDI 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K+++      ++P++ +TA   + D       G + YI KP S    +  +K  +  +
Sbjct: 70  CKELRS---FSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRS 125


>gi|260554988|ref|ZP_05827209.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411530|gb|EEX04827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 247

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++ ED+    +     +   GY      +G  ALE   Q   D++++D+ L  + G
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++ +     +P++ +TA A + D       G + Y++KP  L+  +  ++  + 
Sbjct: 61  LEVARRLRAEGHT--VPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|229113505|ref|ZP_04242954.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229164674|ref|ZP_04292538.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228618754|gb|EEK75716.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228669923|gb|EEL25317.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 221

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 9   EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68
           +D    + L    +   GY  ++  +G EA+ L    +  ++++DI + E++G E   +I
Sbjct: 2   DDEPRMLDLLSLYLTPRGYHCIKATSGKEAISLVEAKEFRLLLLDIMMPEMNGWETCNKI 61

Query: 69  KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +E      +P+I +TA     D  +  K G + Y++KP      +  I+  +  
Sbjct: 62  RE---FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRR 112


>gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 865

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 66/119 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++V+IV+D E N ++    +E  G+   +  NG EA+   ++ +PDV++MD+++  + G
Sbjct: 656 MRRVLIVDDAEQNRQMLHRYLEPLGFALDEACNGQEAVAKVQERRPDVVLMDLRMPVMDG 715

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           L  T+ I+  S      +IA++A A + +       GC+ +++KP+   + M  +   +
Sbjct: 716 LSATRAIRRLSNSHHTVIIAISASAFEENRAACLAAGCDGFLAKPVRFEVLMAQLGALL 774


>gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
 gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
          Length = 1145

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 72/126 (57%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56
            ++++IVED+  N+    +++E  G +    RNG EAL+   +       + D+++MD+ +
Sbjct: 1020 RRILIVEDDVRNIYALTNILEPRGAVIEIARNGEEALQKLDRSLSSTDGRIDLVLMDVMM 1079

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
              + GL  T+ I+ +   +++PVI +TA AM  D++R  + G   Y++KP+ +   +  +
Sbjct: 1080 PVMDGLTATRHIRNNPNWKKLPVITLTAKAMPDDQKRCIEAGANDYMAKPLDVEKLLSLV 1139

Query: 117  KKYIGE 122
            + ++ +
Sbjct: 1140 RVWMPQ 1145



 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +K+++VED++    + RDL     +  L      EALELARQH P  I++D+ L + SG
Sbjct: 751 TRKLLVVEDDQSFAMILRDLARELSFQVLVAGTAQEALELARQHAPSAIVLDVGLPDQSG 810

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           L +  ++K D   + IP+  ++A   +   ER    G   Y  KP+     ++ +K  
Sbjct: 811 LSVLDRLKRDVRTRHIPIHIISA---EDYSERALSLGAIGYAMKPVQRDELLDVLKSL 865



 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 47/94 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IVEDN++  +    LI +     +      E L L ++   D +++D+ L + SG 
Sbjct: 874 RRVLIVEDNQIQREAVSKLIGSQDVETVGAGTAAECLALLKEQTFDCMVLDLSLPDASGF 933

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            + + I +D+     PVI  T   +  +EE+  +
Sbjct: 934 ALLETISQDTAHSFPPVIVYTGRVLSAEEEQSLR 967


>gi|196048307|ref|ZP_03115484.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus 03BB108]
 gi|196021044|gb|EDX59774.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus 03BB108]
          Length = 230

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           ++ ++++ED           ++ +G+  L+   G EALE+ R H+  D+ ++D+ L  I 
Sbjct: 1   MQTILVLEDELTIRSFIVLNLQRAGFNVLEASTGEEALEIFRTHQAIDIALLDVMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I++ ++  ++ VI +TA     +  +    G + YI KP S +  +  IK  +
Sbjct: 61  GFEVCRKIRDFND--QLGVIMLTACVQNKEIIQGLTMGADDYIEKPFSPTELIARIKSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|163788902|ref|ZP_02183347.1| two-component system sensor histidine kinase/response
            [Flavobacteriales bacterium ALC-1]
 gi|159876139|gb|EDP70198.1| two-component system sensor histidine kinase/response
            [Flavobacteriales bacterium ALC-1]
          Length = 1315

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
               +++VEDNE        L+    Y  +  +NG+E L++A+    D II D+ + ++ G
Sbjct: 1065 SHTLLLVEDNEEIRNYITLLL-GEYYNIITAKNGVEGLKIAKNKNIDFIISDVMMPKMDG 1123

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  + IK D +   IP I ++A   K D+ R  + G +AY+ KP         IK  I
Sbjct: 1124 FEFCEHIKSDLKTSHIPFIIISAKTAKEDKLRGYQLGIDAYLFKPFDKDELQLIIKNLI 1182


>gi|91785406|ref|YP_560612.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689360|gb|ABE32560.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 246

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D+ +   L    ++++G+ A    +G        + +P V+++DI +    
Sbjct: 1   MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL     ++   +  +IPVI VTA     D       G + Y++KP      +  I   +
Sbjct: 61  GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|254427282|ref|ZP_05040989.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196193451|gb|EDX88410.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 301

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+  ++ +    ++ +G  AL    G++AL +A +  PD+I+MD  +  + G E 
Sbjct: 10  ILVVDDSPDSLGMIHQALDQAGLTALIALEGLQALSIAEKMTPDLILMDAIMPTLDGFET 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K+   L  +PVI +T      D  R  + G   YI+KP+  +  +  I+ ++  A
Sbjct: 70  CRRLKKHPGLASVPVIFMTGLTESEDVVRGLEAGGVDYITKPVRPNELIARIRVHLNNA 128


>gi|301307690|ref|ZP_07213647.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
 gi|300834364|gb|EFK64977.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
          Length = 1369

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN    +  +  +    Y  L   +G +A +L  +  PD++I D+ +    G+ 
Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1180

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK D     IPVI +TA + K  +    + G + YISKP ++ + +  ++  I
Sbjct: 1181 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1237


>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
 gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
          Length = 1343

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 70/117 (59%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VEDN +N ++ + ++E          NG  AL+  ++   D+++MD+Q+  + GL 
Sbjct: 991  KILLVEDNMINQEVAKGILEQFNPTIEVADNGQVALDRVQKEHFDIVLMDMQMPVMDGLT 1050

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T++I+E   L  +P++A+TA AM+ D ++ +  G   ++SKPI +   +  I+ +I
Sbjct: 1051 ATRKIREIEALAGLPIVAMTANAMERDIKQCKAAGMNDHVSKPIDIEELINAIQTWI 1107



 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57
           K+V++V+DN+ +  +   L++          NG EA+             DV++MD ++ 
Sbjct: 841 KRVLVVDDNQASRDIMYALLDNLDLRVAAVSNGEEAVYEVESADLSNDGFDVVVMDWKMP 900

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAM-----KGDEERIRKGGCEAYISKPISLSIF 112
            I+G E T +I+E S  +   VI  +A+         + + +        + KPI+ S  
Sbjct: 901 GINGDEATVKIRELSLNKMPKVILASAYGENSGLINEEVQNVFDAS----LVKPINPSSL 956

Query: 113 METIKKYIGE 122
            + + +  G+
Sbjct: 957 FDALMEAFGQ 966


>gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 1153

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DN         L+    +      NG +A+       P +I+ DI +  + G E
Sbjct: 622 KILVVDDNADMRAYLTRLLAPY-FTVSTAVNGADAIRQLATDLPQLILSDIMMPVMDGKE 680

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K++     IP+I ++A A +       + G + Y+ KP S    +  I+  I
Sbjct: 681 LLRRVKQNPVTAPIPLIFLSARAGQEARIDGLEAGADDYLVKPFSSLELLTKIRAQI 737


>gi|260587254|ref|ZP_05853167.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|331083571|ref|ZP_08332682.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542449|gb|EEX23018.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|330403782|gb|EGG83334.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +  VED     +L    + T+G+ A    +G E  +  ++  P++I++DI L    G  +
Sbjct: 2   IYCVEDERNIRELLVYTLGTTGFEAKGFGDGKEFKKALKEELPELILLDIMLPGEDGYTL 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K++    EIPVI VTA   + D+ R  +GG + YI+KP  +  F+  +K  +  +
Sbjct: 62  LEELKKEPSTSEIPVIMVTAKEAEYDKVRGLEGGADDYITKPFGMMEFLARVKAVLRRS 120


>gi|187925557|ref|YP_001897199.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716751|gb|ACD17975.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 246

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D+ +   L    ++++G+ A    +G        + +P V+++DI +    
Sbjct: 1   MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL     ++   +  +IPVI VTA     D       G + Y++KP      +  I   +
Sbjct: 61  GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
 gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
          Length = 276

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L +  +   G+      +G EA+    +  PDV+++DI L ++ GLE
Sbjct: 52  RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 111

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++E       P + +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 112 ILRRVRESDVY--TPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 169


>gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
 gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        +  +E SG+     ++G E L LA++ + DVI++D+ L  + G  
Sbjct: 2   RILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVMLPVLDGWG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++E       PV+ +TA     D     + G + Y+ KP +    +  I+     
Sbjct: 62  VLKRLRE---THTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARR 117


>gi|294495053|ref|YP_003541546.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
 gi|292666052|gb|ADE35901.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
          Length = 355

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 64/118 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D      L +  ++   Y  L   NG +A+E+AR+  PD+I++DI + ++ G E+
Sbjct: 228 ILIVDDEPDIPDLLKLSLKDEPYDFLVAYNGKDAIEIAREKIPDLILLDIMMPDMDGYEV 287

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +K++ + ++I +I +TA     D+ +  + G + YISKP         IK  +  
Sbjct: 288 VETLKKERDTRDIAIIMITAKTKVDDKLKGMELGIDDYISKPFDKREVNARIKMVMKR 345


>gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D      L    ++  GY     +NG++ +E A+ +  DVII+DI L EI G++
Sbjct: 2   RILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIMLPEIDGIQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K ++  +     P++ +TA     D+ +    G + Y++KP  LS     I+  +  
Sbjct: 62  ILKNLRNMNI--NTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRR 118


>gi|226951682|ref|ZP_03822146.1| type IV pili response regulator PilH [Acinetobacter sp. ATCC 27244]
 gi|294651363|ref|ZP_06728682.1| twitching motility regulator PilH [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837598|gb|EEH69981.1| type IV pili response regulator PilH [Acinetobacter sp. ATCC 27244]
 gi|292822765|gb|EFF81649.1| twitching motility regulator PilH [Acinetobacter haemolyticus ATCC
           19194]
          Length = 120

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 67/119 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+      FR+++   GY  L+  NG + + +A+   PD+++MD+ +  ++G
Sbjct: 1   MARILIVDDSPTETFRFREILTKHGYEVLEATNGADGVTMAQAELPDLVLMDVVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+QI +  + Q IPV+ V+      D    ++ G   Y++KP+     ++ IK+ +
Sbjct: 61  FQATRQISKAKDTQHIPVVIVSTKDQATDRVWGKRQGASDYLTKPVDEQQLIDVIKQLL 119


>gi|224537529|ref|ZP_03678068.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520842|gb|EEF89947.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1373

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++DN+  + + +D++    Y  L   NG E L L +Q  PD+II DI + +I G+ 
Sbjct: 1116 TILMIDDNKELLWMLKDILSDE-YSILTAENGEEGLVLLKQKTPDLIITDIMMPKIDGIT 1174

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + KQ+K +     IP+I ++A     ++    + G +AYI KP +       IK+ +
Sbjct: 1175 LIKQLKSNKHTMHIPLIILSAKNTTDEKIEGIESGADAYIPKPFNTQYLRSIIKQLL 1231


>gi|170077489|ref|YP_001734127.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885158|gb|ACA98871.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 764

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 65/113 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN  N K+   +++  GY      NG+E LE   Q   DVI+MDIQ+ E+ GL+
Sbjct: 642 KILLAEDNLTNQKVVAKILKNLGYQVDIVSNGLEVLEAVEQQIYDVILMDIQMPEMDGLD 701

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            TK + + +      VIA+TA AM+ D     + G + YI+KP+ L + ++ +
Sbjct: 702 ATKALLKLNLEPHPYVIALTANAMQHDRLACLEVGMDDYITKPVRLDLLVQAL 754


>gi|187736215|ref|YP_001878327.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187426267|gb|ACD05546.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 234

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I ED++       D++  SGY  L    G+ A+   R+   D+ ++D+ +    G +
Sbjct: 7   TILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMPGADGFQ 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + +    E    PVI +TA   + D  +  K G + YI KP S+   +  I+  +  +
Sbjct: 67  VLQVM--SEERPGTPVIMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVLRRS 124


>gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 226

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     ++  GY  ++  NG   LE+A + + D++++DI L EI+G
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++++      +IP+I +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri]
 gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 228

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E         ++  GY      +G   LE A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E   L++ P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVARRVRE---LKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|71065720|ref|YP_264447.1| putative two component system regulatory protein [Psychrobacter
           arcticus 273-4]
 gi|71038705|gb|AAZ19013.1| putative two component system regulatory protein [Psychrobacter
           arcticus 273-4]
          Length = 233

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++EDN   +       E  G+      NG+  L LA  ++ DVI++D+ L  + G
Sbjct: 6   MYKILLIEDNPDIVANIYAFFEPKGFELDNAHNGLSGLALAANNRYDVILLDVMLPGMDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K ++E+   +  PV+ +TA     D+      G + Y+ KP SL      IK  I 
Sbjct: 66  TKLCKMLREELHDK-TPVLMLTARDTILDKVAGFDSGADDYLVKPFSLVELEARIKALIR 124

Query: 122 E 122
            
Sbjct: 125 R 125


>gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
 gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
          Length = 1188

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 70/116 (60%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY  +   NG  AL++      D ++MDIQ+  + GL  
Sbjct: 1066 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIVDSRPFDAVLMDIQMPVMDGLTA 1125

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E      +P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +I
Sbjct: 1126 ARALRERYSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLTHWI 1181



 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  L+    +      +G EAL    +   D++++D  + E+ G +
Sbjct: 920  RTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGSD 979

Query: 64   ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I     +  + + P +I +TA+A +     +      A + KP   S   + I
Sbjct: 980  VISAIDTMVAEGRIAKRPIIIMMTAYAAEPLLHEVDSANVFAVLQKPFKASSLFDEI 1036


>gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + IV+D++   ++   ++E  G+  +   +G+ A+E+    KPD+I++D+ L  + G
Sbjct: 1   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             + ++I+       +P+I +TA +   D     + G + Y+ KP  ++  +  I+ 
Sbjct: 61  TGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRA 114


>gi|332526126|ref|ZP_08402264.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109969|gb|EGJ10597.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++VED     +L    +  +GY         +A     +  PD++++D  L   SG
Sbjct: 1   MSHVLVVEDESAIAELISINLRHAGYEVTVAATADQAQAAVDRVLPDLVLVDWMLPGQSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++ + ++  +EIP+I +TA   + D+      G + Y++KP S    +  ++  + 
Sbjct: 61  LQLARRWRAETRTREIPIIMLTARNEEADKIAGLDAGADDYLTKPFSPKELLARMRAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 249

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D      L    +  +G+      +G  AL+   +  PD++++D+ L ++ G 
Sbjct: 15  AHLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGF 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E       P++ +TA     D+ +    G + Y++KP  L   +  I+  +  
Sbjct: 75  TVARRLRERDVT--TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRR 132


>gi|327438528|dbj|BAK14893.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++VED+    ++ +D +   GY       G+E LE       D+I++D  + E+ 
Sbjct: 1   MEQQILLVEDDREIARIIKDTLIKEGYAVTWATTGIEGLEDFSAGSYDLILVDWMMPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I+  S   ++P+I ++A + + D+    +   + Y++KP SL      ++  I
Sbjct: 61  GLSMIEHIRLQS---DVPIIMISAKSNESDKVTGLQ-DADDYLAKPFSLEELKARVRSQI 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|239929290|ref|ZP_04686243.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 221

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M++ED++         +   G+      +G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 1   MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 61  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 114


>gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 863

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 75/123 (60%), Gaps = 3/123 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED+ ++    + ++E +G      ++G EAL+L  +   D+I+MDIQ+  + G++
Sbjct: 737 RILIAEDDTVSSLTCKRMLEKTGSSVTSVKDGKEALQLLCEKVFDLILMDIQMPVMDGVD 796

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+E     +   IP+IA+TA+AM GD+E+  + G   YISKP+ +    E I++ +
Sbjct: 797 ATRAIREGRAGEDKASIPIIAMTAYAMTGDKEKFLEAGMNDYISKPVEMETLKEVIERVM 856

Query: 121 GEA 123
            +A
Sbjct: 857 EKA 859


>gi|224537326|ref|ZP_03677865.1| hypothetical protein BACCELL_02204 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521057|gb|EEF90162.1| hypothetical protein BACCELL_02204 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1313

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++++DN   + + +++     Y  L   +G +A +  + ++ DV+I D+ L + +G E+
Sbjct: 1065 ILLIDDNTELLFVMKEMFRER-YTVLTAADGQQAWDKLKNNEVDVVICDVMLPDANGWEL 1123

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              ++K D     IPVI +TA     D     + G + YI+KP  L I    +   I  +
Sbjct: 1124 CARMKGDLRFNHIPVIILTAKNGIEDRVASYEAGADGYIAKPFELKILFARVDNLIRSS 1182


>gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++   +L  D +   GY      +G++ LE+ +      +I+D+ + ++ G E+
Sbjct: 13  ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFEM 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            KQ+++ S   +IPV+ +TA   + D     + G + Y+ K  S    +  ++     
Sbjct: 73  LKQLRKQS---DIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRR 127


>gi|213971081|ref|ZP_03399201.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301384196|ref|ZP_07232614.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060880|ref|ZP_07252421.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302132855|ref|ZP_07258845.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924189|gb|EEB57764.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 254

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+          +    +      +     +L RQ   DV+++D+ L +  G E
Sbjct: 12  RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++        IPVI +TA     D  R    G + Y++KP      +  I   +  
Sbjct: 72  LCSRLHRRE---NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRR 127


>gi|254412501|ref|ZP_05026275.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180811|gb|EDX75801.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 650

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IV+D   N+++    +   GY       G  A+  A+  +PD+I++DI++ E+
Sbjct: 1   MTKGNLLIVDDTPENLQVLSATLSEQGYQVRGVVKGKMAIRAAKSAQPDLILLDIRMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ + +K D E ++IP+I ++A     D+ +  + G   YI+KP  +   +  ++  
Sbjct: 61  DGYQVCETLKADPETRDIPIIFISAIDDVLDKVKAFRVGGVDYITKPFQVEEVLARVEHQ 120

Query: 120 I 120
           +
Sbjct: 121 L 121



 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D   N  L   L+E  G+   +  NGME L L    +P +I MD ++  + GLE
Sbjct: 425 RILVVDDTPENRLLLTKLLEPIGFEVREAANGMECLPLWETWQPHLIFMDTRMPMMDGLE 484

Query: 64  ITKQIKEDS-----------ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
            T+++K              +L    +IA+TA A +   E I   G E ++ KP +    
Sbjct: 485 ATRRLKSKEKERLSQSNSVLDLSRTIIIALTASAFEERREEILAAGSEDFVRKPFTEEQI 544

Query: 113 METIKKYIG 121
            +TI  ++G
Sbjct: 545 FDTIAHHLG 553


>gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+  L   NG EAL++   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED E   +  +  +E  GY      NG  AL+  +    D+II+DI L E+ G+ +
Sbjct: 9   ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEYFDLIILDIMLPEMDGIAV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+  +   E+P++ ++A     D     K G + Y++KP +L   +  ++K I
Sbjct: 69  CENIRIQNN--EVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLI 122


>gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D++  ++L    I+  GY   +  NG EAL   +  K  D++++D+ +  + G+
Sbjct: 2   KILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDGI 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+++++ +L   P++ ++A     D+ +    G + Y++KP +    M  IK  +  
Sbjct: 62  QVVKEVRKELQL---PILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRR 118

Query: 123 A 123
           +
Sbjct: 119 S 119


>gi|152994993|ref|YP_001339828.1| response regulator receiver protein [Marinomonas sp. MWYL1]
 gi|150835917|gb|ABR69893.1| response regulator receiver protein [Marinomonas sp. MWYL1]
          Length = 304

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   + L  D +E +    L    G +AL +AR+ +PD+I++D  +  + G E 
Sbjct: 11  VLVVDDSPDALSLIHDTLEAANMDVLVALEGKQALTIARRIRPDIILLDAIMPNMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            + +K D  L  IPVI +T  +   D  R  + G   Y++KPI  +  +  ++ ++  A
Sbjct: 71  CRALKADQSLASIPVIFMTGLSDTDDIVRGLEAGGVDYLTKPIQPNELIARMRVHLSNA 129


>gi|153806265|ref|ZP_01958933.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185]
 gi|149130942|gb|EDM22148.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185]
          Length = 1330

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++IVEDN+         + +  Y      NG EAL +A++  PD+I+ DI + E+ G
Sbjct: 1062 SQRILIVEDNDELRSYLVSSLSSM-YHVQACGNGREALIIAKEFWPDLILSDIMMPEMRG 1120

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E+   IK D E   IPV+ +TA   + +       G +AYI KP ++ I   +I   + 
Sbjct: 1121 DELCVAIKNDIETSHIPVLLLTALGDENNILDGMSIGADAYIVKPFNVRILKASIANLLA 1180

Query: 122  -EA 123
              A
Sbjct: 1181 NRA 1183


>gi|323492710|ref|ZP_08097854.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323313085|gb|EGA66205.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 770

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN  N  + R++ +  G       NG +A+E+ +Q++ DVI MDI + E+ G++
Sbjct: 491 RVLVAEDNRANQLVIREMFKRIGLNIDIAENGRQAIEMVQQYQYDVIFMDISMPEMDGMQ 550

Query: 64  ITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             K I+   D    ++P+IA+TA ++ GD+E+    G   Y+SKP+  S  ++ I  ++ 
Sbjct: 551 ACKAIRNLDDPATAKLPIIALTAHSLAGDKEKFLASGMNDYLSKPLRASQLIDKINLFLN 610

Query: 122 E 122
           E
Sbjct: 611 E 611


>gi|308271052|emb|CBX27662.1| hypothetical protein N47_H24840 [uncultured Desulfobacterium sp.]
          Length = 1019

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            KKV+IV+D+  N+    ++IE  G   L  +NG E LE    +   D+++MDI + E++G
Sbjct: 898  KKVLIVDDDMRNVFAVSNIIEEKGMEVLVGKNGREGLERLNGNPDIDLVLMDIMMPEMNG 957

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E   +I++    + +P+IA+TA AM G+  +  + G   Y++KP  +   +  ++ ++
Sbjct: 958  YEAMTEIRKQMRFKSLPIIALTAKAMTGERNKCLEAGASDYLAKPFDIDKLLSLMRVWL 1016



 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++I+ED+    ++  DL    G+  L   +G   L  A  +KP+ +I+DI L  + GL
Sbjct: 629 KSILIIEDDSKFAEVLLDLARERGFKGLIAGSGETGLHFADYYKPNAVILDIGLPGMDGL 688

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI---FMETIKKY 119
            + +++KE++  + IPV  ++A   K       + G   Y++KP+SL       + I+  
Sbjct: 689 SLMERLKENAATRHIPVHFISASDDKS--IIAMRMGAIGYLTKPVSLEDIDSVFKKIENI 746

Query: 120 I 120
           I
Sbjct: 747 I 747



 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDNE+      +L+E        +  G  A EL +    D +I+D+ L+++SG +
Sbjct: 753 RLLVVEDNEIERNNIVELLEGKDVQIEISGGGDAAYELLKTGTFDCVILDLDLEDMSGPD 812

Query: 64  ITKQIKEDSELQEIPVIAVTAF--AMKGDEERIRKGGC 99
             K+IK D  + +IPVI  T    + + +    R+ G 
Sbjct: 813 FIKKIKNDKNISDIPVIIYTGKEFSREDEAVLNRQAGA 850


>gi|294776040|ref|ZP_06741536.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
 gi|294450178|gb|EFG18682.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
          Length = 1365

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  + L   L+    Y  L++ NG EALE+  + + D+I+ D+ + E+ G+E
Sbjct: 1115 TILLVEDNEELLALMVRLLHGK-YHILKSANGTEALEILAKQEVDLIVSDVMMPEMDGME 1173

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +++K   E   IP+I +TA     D     + G + YI KP+ LS+    I   +  
Sbjct: 1174 LCRRVKTQFETCHIPLILLTAKTSDEDHVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1232


>gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 230

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++VED     ++ +  +  SG++     +G E L+ A  +  DVI++DI L +  
Sbjct: 1   MSKRILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+++  +      ++ ++A   + D       G + Y++KP S    +  IK  I
Sbjct: 61  GFAVCKELRAQNI--STYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAII 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|302381374|ref|YP_003817197.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192002|gb|ADK99573.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 234

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + +V+D+E  +      +E+ G+  +   +G   LE      PD+ I+D+++  + G
Sbjct: 1   MANITLVDDDENIVASVSLALESHGHKVVAYHDGATGLEALEASPPDLAILDVKMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +++++     +IPVI +T+   + DE      G + Y+ KP S  + +E +K  + 
Sbjct: 61  MEVLRRLRQ---TSQIPVIMLTSKDEEIDEILGFNLGADDYMHKPFSQRLLIERVKALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|302535152|ref|ZP_07287494.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444047|gb|EFL15863.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+ VED+++  +     +E  G++     +G+  LE  R ++PD+ ++D+ +  + G+ 
Sbjct: 5   HVLFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRANRPDIALLDVMVPGMDGVS 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S    +PVI ++A A   D     + G + Y++KP   S+ +  I+  +  
Sbjct: 65  LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRR 120


>gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 218

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++I+ED E    L +  +  +GY + Q  +G+EAL L ++   D+I+MDI L  + 
Sbjct: 1   MKINILIIEDEEAISNLIKINLTMAGYESRQVFDGLEALNLLKEESFDLILMDIMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K+IK+      IPVI +TA     D+    K G E YI KP      +  I+  +
Sbjct: 61  GFELMKRIKDL----NIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|238921493|ref|YP_002935008.1| osmolarity response regulator [Edwardsiella ictaluri 93-146]
 gi|269140620|ref|YP_003297321.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|294638112|ref|ZP_06716369.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|238871062|gb|ACR70773.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267986281|gb|ACY86110.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|291088744|gb|EFE21305.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|304560407|gb|ADM43071.1| Two-component system response regulator OmpR [Edwardsiella tarda
           FL6-60]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 242

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D +   KL    ++  GY  LQ  +G E LE+ ++    +I++DI + +I G+ 
Sbjct: 14  TILIVDDEKEIRKLIAIYLKNEGYEVLQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGIH 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E   + E+P+I ++A     D+      G + Y++KP +    +  IK  +  
Sbjct: 74  MCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129


>gi|227500016|ref|ZP_03930095.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217913|gb|EEI83200.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 227

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED+E  + L    +E   YI  +     EA+   ++ + D+ I+DI L +  
Sbjct: 1   MNYSVLVVEDDESILDLIEIYLENENYIIKKATCSEEAIRYIKEEEFDLAILDIMLPDKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+E       P+I +T+   +  + +    G + Y++KP      +  +K  +
Sbjct: 61  GYYLCKKIRESFNY---PIIMLTSKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +   +L    +   G+      +G  AL    +   DV ++D+ L +I 
Sbjct: 1   MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + I++       PV+ +TA     D+      G + Y++KP +    +  +K  +
Sbjct: 61  GFQLLQNIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
 gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
 gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
          Length = 553

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 69/116 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN+ N  +   +++  GY      +G EAL    +   D+++MD Q+  + G  
Sbjct: 437 RILVAEDNKTNQLVISTMLKRLGYQYDLCGDGQEALSQLDKQDYDLVLMDCQMPTMDGFI 496

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I+++ +L+ +P+IA+TA A + ++++    G   ++SKPI L++  + ++++
Sbjct: 497 ATQNIRKNPDLKNLPIIALTAGATEKEQKQCFDSGMNDFLSKPIKLNVLKDALERW 552



 Score = 40.5 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYI-----ALQTRNGMEA-LELARQHKPDVIIMDIQLQE 58
           V++V+D+E   +L + ++    +           +  EA   +A      V ++D+ ++ 
Sbjct: 32  VLVVDDDEYVHQLTKMVLRGFTFEGSPIRLASALSAKEAKYYIATHDNVAVALVDVVMET 91

Query: 59  IS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAYISK-PISLSIFMET 115
            + GL++   I+E+    EI ++  T       EE +        Y+SK  I+       
Sbjct: 92  DNAGLDLVNFIREEHNNNEIRLLIRTGQPGAAPEESVFQDYDINDYLSKTDITAHKLRMA 151

Query: 116 IKKYIG 121
           +   + 
Sbjct: 152 LLNALR 157


>gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185]
 gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185]
 gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 244

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 11  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 71  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 127


>gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 848

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ EDN +N    +D  E  G+      NG   LE  R    D+I+MDIQ+  + GLE T
Sbjct: 623 LLAEDNRINQFFLKDYFEAMGHSVDIAENGRLVLEKLRSKPYDLILMDIQMPHMDGLEAT 682

Query: 66  KQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + I+   D    +IP++A+TA+A+  D  +  + G +AY+ KPI+       I   +G
Sbjct: 683 RIIRSSNDEPWADIPIVALTAYALSQDRSKAMEAGMDAYVLKPINFEELEREIVHALG 740


>gi|315606849|ref|ZP_07881858.1| two component system sensor histidine kinase/response regulator
            [Prevotella buccae ATCC 33574]
 gi|315251514|gb|EFU31494.1| two component system sensor histidine kinase/response regulator
            [Prevotella buccae ATCC 33574]
          Length = 1298

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++D    ++L    +  + +  ++  +G + LE A +  PD+I+ D+ +  + G+E
Sbjct: 1055 TILVIDDEHDTVELLERNL-AADFKVIKAYDGRQGLEEAARTLPDIIVCDLMMPNMDGME 1113

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
                +K D +L  I VI  TA   + D       G +AY++KPISL +  + I + + ++
Sbjct: 1114 FLHMLKSDKKLAHIKVIIFTAKTSEEDMIEAFDQGADAYLTKPISLRLLRKRIDRLVAQS 1173


>gi|308070222|ref|YP_003871827.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305859501|gb|ADM71289.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 266

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+   ++L  + ++   Y      +G   +E  R ++PD +++DI +  I G
Sbjct: 31  MTKIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIMMPGIDG 90

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L +  Q++E     E+P+I ++A   + D     + GC  +++KP +    +  +K  + 
Sbjct: 91  LSLLTQLRE---FTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLR 147


>gi|289663273|ref|ZP_06484854.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++VED+  +  +    +   G+      +G  A++L RQ  PD++++D+ L ++SG+
Sbjct: 4   KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   I+      + PVI VTA   + ++    + G + Y+ KP S    +  +   +  
Sbjct: 64  EVLSAIRRAG---DTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|266624372|ref|ZP_06117307.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288863787|gb|EFC96085.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 230

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++I +D+E  +++ + L+   GY  +   +G EA+ LA     D+II+D+ +   S
Sbjct: 1   MAQRILIADDSEEIIEILQILLTGEGYEVVTAGDGEEAVRLADD-TIDLIILDVMMPVKS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G     +I++ +     P++ +TA     D+      G + Y++KP S S  +   K  +
Sbjct: 60  GYVACSEIRKKTMA---PILFLTARTQDSDKSMGFSAGGDDYLAKPFSYSELLSRCKSLL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 844

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++VED+  N ++  +L+E  G+      NG EA+EL     P +I MD+ L  + G
Sbjct: 629 SYRLLVVEDHPTNRQVLVNLLEPIGFQVKTADNGQEAVELWETWHPHLIWMDLHLPIMDG 688

Query: 62  LEITKQIKEDSE-----LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            E T+QIK   E     +    +IA+TA A   +   +   GC+ +++KP S  I ++ I
Sbjct: 689 YEATRQIKAKMEKFPLDIYPTKIIALTASAFAQERSAMLALGCDDFVTKPFSEGIILDKI 748

Query: 117 KKYIG 121
            +++G
Sbjct: 749 AQHLG 753


>gi|254409963|ref|ZP_05023743.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182999|gb|EDX77983.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1525

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62
            K++IV+D+ +N ++  + +    Y   Q  NG EAL++     +PD+I++D  +  ++G 
Sbjct: 978  KILIVDDDTVNRQILVNYLSLENYQLAQAANGREALDIINNGFQPDLILLDAIMPRMTGY 1037

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+++E     E+PV+ +TA     D       G   Y++KPI+    +  IK ++ 
Sbjct: 1038 DVCKKLREFYPPTELPVLMLTANEQVNDLVAGFSVGVNDYLTKPIAKYKLLVRIKTHLR 1096


>gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 844

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++VED+  N ++  +L+E  G+      NG EA+EL     P +I MD+ L  + G
Sbjct: 629 SYRLLVVEDHPTNRQVLVNLLEPIGFQVKTADNGQEAVELWETWHPHLIWMDLHLPIMDG 688

Query: 62  LEITKQIKEDSE-----LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            E T+QIK   E     +    +IA+TA A   +   +   GC+ +++KP S  I ++ I
Sbjct: 689 YEATRQIKAKMEKFPLDIYPTKIIALTASAFAQERSAMLALGCDDFVTKPFSEGIILDKI 748

Query: 117 KKYIG 121
            +++G
Sbjct: 749 AQHLG 753


>gi|170699335|ref|ZP_02890383.1| two component transcriptional regulator, AraC family [Burkholderia
           ambifaria IOP40-10]
 gi|170135765|gb|EDT04045.1| two component transcriptional regulator, AraC family [Burkholderia
           ambifaria IOP40-10]
          Length = 277

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   +++L  +++ ++        +G++A   A+   PD+I+MD+++  + G 
Sbjct: 20  AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRMDGF 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              + +      Q IPVI +TA A   D     + G   YI KP      +  I+ ++  
Sbjct: 80  AACRLLASTPSTQNIPVIILTAAADLEDRIAGLETGALDYIVKPFEPVEVIARIRNHLKR 139

Query: 123 A 123
           A
Sbjct: 140 A 140


>gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 226

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     ++  GY  ++  NG   LE+A + + D++++DI L EI+G
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++++      +IP+I +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
            M21/2]
 gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1084

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 5/123 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59
            K +++VEDNELN ++ ++++   G++     NG  A+E      P   D+++MD+Q+  +
Sbjct: 962  KHILLVEDNELNREIAQEILREYGFLVDSAENGAVAVEKVSTAAPGSYDLVLMDVQMPIM 1021

Query: 60   SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             G   T++I+   D    +IP++A+TA A   D     + G   ++SKPI +   ++ + 
Sbjct: 1022 DGYTATRKIRALDDPARAKIPILAMTANAFDEDRRNALESGMNGFLSKPIVIDDLVQELH 1081

Query: 118  KYI 120
            K +
Sbjct: 1082 KIL 1084



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           K ++V+D+         ++   G  A  T +G EA+  ARQ           I+D +L +
Sbjct: 821 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDVYHAYIIDWRLPD 880

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+E+T+QI+   +  + P+I +TA+     E   +  G  A+ SKP+ +S   ET+  
Sbjct: 881 MNGIEVTRQIRSLHD--DTPIIILTAYDWSDIEVEAKAAGVTAFCSKPMFMSDLRETLMS 938

Query: 119 YIGE 122
            +G+
Sbjct: 939 ALGQ 942


>gi|301310542|ref|ZP_07216481.1| response regulator DrrA [Bacteroides sp. 20_3]
 gi|300832116|gb|EFK62747.1| response regulator DrrA [Bacteroides sp. 20_3]
          Length = 228

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL+       +++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK-DLTVYNLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +++D +    P+I +TA   + D       G + YISKP S+   +  +K  +  
Sbjct: 64  MARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122


>gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +  +  +  +E  GY      +G+   E  +   P V ++D+ L  + G+E
Sbjct: 6   RLLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVMLPNLDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+       +PV+ ++A     D  +  + G + Y+ KP   S+ +  I+  +  
Sbjct: 66  LCRRIR---GCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRR 121


>gi|323527545|ref|YP_004229698.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384547|gb|ADX56638.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 246

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D+ +   L    ++++G+ A    +G        + +P V+++DI +    
Sbjct: 1   MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL     ++   +  +IPVI VTA     D       G + Y++KP      +  I   +
Sbjct: 61  GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|253572356|ref|ZP_04849759.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|251838131|gb|EES66219.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++       +I++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +   +P+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|150007457|ref|YP_001302200.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|255013954|ref|ZP_05286080.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262382003|ref|ZP_06075141.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375433|ref|ZP_06985390.1| response regulator DrrA [Bacteroides sp. 3_1_19]
 gi|149935881|gb|ABR42578.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|262297180|gb|EEY85110.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298267933|gb|EFI09589.1| response regulator DrrA [Bacteroides sp. 3_1_19]
          Length = 228

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL+       +++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK-DLTVYNLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +++D +    P+I +TA   + D       G + YISKP S+   +  +K  +  
Sbjct: 64  MARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122


>gi|148283360|gb|ABQ57262.1| AdeR [Acinetobacter baumannii]
          Length = 220

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 10  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 70  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 124


>gi|170726314|ref|YP_001760340.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811661|gb|ACA86245.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1713

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +KV+IV+D+  N       +   G+      NG EA+E   + K  ++++MD  + E+ G
Sbjct: 1592 RKVLIVDDDMRNTYALSKKLIEYGFEVEMAHNGKEAVEQLTEDKSFELVLMDTMMPEMDG 1651

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + TK+I+E    +++P+IA+TA  M  D E+  + G   Y++KPI     +  ++ ++
Sbjct: 1652 YQATKRIREMEHYKQVPIIALTAKTMPEDREKSLQSGASEYLTKPIDFEKLLSIMRIWL 1710



 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++I++D+ +  K+ RD     GY +L   +G   + LA++++P+ II+DI L +I G ++
Sbjct: 1325 ILIIDDDPVFAKILRDHARECGYQSLVAGDGRMGIFLAQEYQPNGIILDIMLPDIDGHQV 1384

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKY-- 119
             +Q+K   + + IPV  ++A     D+      G     +KP+S    +     IK +  
Sbjct: 1385 LEQLKFSLKTRHIPVEIISAHN--EDKNAALVQGAIGLQTKPVSQETLLSVFDEIKSFSS 1442

Query: 120  --IGE 122
              +  
Sbjct: 1443 SELRR 1447



 Score = 77.1 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++++ED+  N      L+E S         G E +E     + D II+D+ L +ISG 
Sbjct: 1446 RRLLVIEDDAGNQTSIVRLLEGSDIDIKCVDKGTEGVEEILSGQYDCIILDLGLPDISGF 1505

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92
            E+ KQI+     +  PVI  T   +   E+
Sbjct: 1506 EVLKQIESSKLERIPPVIIYTGKEITDQEQ 1535


>gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 247

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 21  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 81  CRRVREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135


>gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 226

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I+ED     +L +  +E  GY      +G+   +L  Q   D+IIMDI L +I+G++
Sbjct: 2   HILIIEDESRIAQLLQRGLEELGYKTTVAYDGILGKKLVWQQAYDLIIMDIILPKINGID 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++IKE     ++P+I +TA     D+      G + Y+ KP         I+  +  
Sbjct: 62  LCREIKE--SYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLLKR 118


>gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
 gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
          Length = 242

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEISGL 62
           ++VED++   +   +++   G+      +G  AL L         D+I++D+ L  + GL
Sbjct: 16  LVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPGLGGL 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++  +     P++ ++A   + D     + G + Y+ KP  L   +   +  +  
Sbjct: 76  DLCRELRRINNT--TPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 133

Query: 123 A 123
           +
Sbjct: 134 S 134


>gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 228

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVED     +  +  +E  G+ A    NG  A E   Q   D+I++D+ L  + G+E
Sbjct: 6   HVLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++    +  +P+I +TA     D       G + YI+KP ++   +  ++  +  
Sbjct: 66  ICRRVR---TVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARVRNALRR 121


>gi|209526276|ref|ZP_03274806.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493373|gb|EDZ93698.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 335

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D+    +L R  ++  GY     ++G EA+   +Q+ PD++I+DI + EI+G 
Sbjct: 128 KTILIVDDDPSIRELLRQELDAEGYNVRLAKDGREAISQIKQNPPDLVILDIIMPEINGF 187

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++   +K D E Q IP++ V+A        R  + G + Y++KP++    ++ +K     
Sbjct: 188 DVAAILKHDPETQHIPILVVSADDSVS---RGYQVGVDKYLTKPVAQETLLQEVKSLFAR 244



 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 31/49 (63%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVII 51
           K+V+IV+ +   +++  ++++T GY+  QT+   E L   R  KPD++I
Sbjct: 249 KRVLIVDRDISTLEILNEVLKTQGYLVSQTQGEEEFLPQIRAMKPDLVI 297


>gi|147920988|ref|YP_685202.1| putative response regulator (CheY-like) [uncultured methanogenic
           archaeon RC-I]
 gi|110620598|emb|CAJ35876.1| putative response regulator (CheY-like) [uncultured methanogenic
           archaeon RC-I]
          Length = 132

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+MIV+D    + L + ++++ GY  +   +G EALE      PD++++DI + ++ 
Sbjct: 1   MANKIMIVDDEPDVVDLVKIVLKSEGYEVVTATSGKEALEKIGNEMPDLVLLDIMMPQMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK-GGCEAYISKPISLSIFMETIKKY 119
           G E+   IK +++ ++IPV  +TA +   D+         + YI+KP   +  +E +KK 
Sbjct: 61  GWEVYNHIKSNTKTRDIPVAMLTAKSQSIDKMIGLHVVQVDDYITKPFGRAELLERVKKI 120

Query: 120 I 120
           +
Sbjct: 121 L 121


>gi|71908547|ref|YP_286134.1| PAS [Dechloromonas aromatica RCB]
 gi|71848168|gb|AAZ47664.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 955

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 69/120 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED  +N ++   +++  G IA    +G+ A+ +  ++  D+I+MD+Q+  + GL 
Sbjct: 834 RILLVEDEPINQEIALAMLDDVGLIADVAEDGVVAIAMLDRNDYDLILMDMQMPRMDGLT 893

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            T++I+E +    I ++A+TA A   D+ R  + G   +I+KP+        + K++ ++
Sbjct: 894 ATRKIREQAGKAGIVILAMTANAFAEDKVRCLEVGMNDFIAKPVDPGHLYAMLVKWLSKS 953


>gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++IV+D    + + + +++  G+   +   +  EA+ + ++ K D++++D+ +  +SG E
Sbjct: 6   ILIVDDENAIVDMVKRVLDKEGFQNVMTAGSAEEAIPIVKKEKIDLLVLDVMMDGMSGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               I+E     + P+  +TA     D+      G + YI+KP +    +  I+ ++  
Sbjct: 66  ACAAIRE---YSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLKR 121


>gi|304408131|ref|ZP_07389780.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342819|gb|EFM08664.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++ +D           ++  G+      +G EAL      +P V+++D+ + +++
Sbjct: 1   MSKRILVADDEPGIASAIAYALQREGFEVQVASDGEEALAAVAAFQPHVLLLDVMMPKLN 60

Query: 61  GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G ++ +++         P VI +T      D+    + G + Y++KP  +   +      
Sbjct: 61  GFDVCRRL----PTSGRPGVILLTVKNDIVDKVLGLELGADDYMTKPFDIRELLARTNAL 116

Query: 120 IGE 122
           +  
Sbjct: 117 LRR 119


>gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703]
 gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|288941950|ref|YP_003444190.1| response regulator receiver protein [Allochromatium vinosum DSM
           180]
 gi|288897322|gb|ADC63158.1| response regulator receiver protein [Allochromatium vinosum DSM
           180]
          Length = 121

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K ++ V+D+    ++    ++ +GY   +  +G + L+ AR  K D+I  D  +  + 
Sbjct: 1   MAKTILTVDDSASIRQMVSFTLKEAGYAVTEAVDGQDGLDKARSGKFDLIFTDQNMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + KQ++     + +P++ +T  +    + + R  G   ++ KP   +  +E ++K I
Sbjct: 61  GLSLIKQLRALPTYKSVPILMLTTESSDAMKSQGRAAGATGWLVKPFDPAKLLEVVRKVI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|257790764|ref|YP_003181370.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474661|gb|ACV54981.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++++D     +L   +   +GY      +G E L +A +  PD++IMD+ +  + G
Sbjct: 1   MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               + ++E       PVI ++A     D+    + G + Y+ KP      +  I+ ++ 
Sbjct: 61  FTTCRLMRERGIT--CPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260622611|gb|EEX45482.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1476

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDN    +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 1218 TLLLVEDNRDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + + E
Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLSE 1335


>gi|170695738|ref|ZP_02886880.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170139343|gb|EDT07529.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 246

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D+ +   L    ++++G+ A    +G        + +P V+++DI +    
Sbjct: 1   MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL     ++   +  +IPVI VTA     D       G + Y++KP      +  I   +
Sbjct: 61  GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 224

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I+ED E         ++  GY      +G + LE A +   D+I++D+ L  ++G
Sbjct: 1   MQHILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAALETNYDLILLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++     +  P+I +TA     D       G + Y+ KP ++   +  ++    
Sbjct: 61  IEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1166

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 71/124 (57%), Gaps = 3/124 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
            +V++VEDN +N ++  +L+  +G       +G  AL+L     P D+++MDIQ+ ++ G
Sbjct: 828 ARVLLVEDNAINQEIAIELLGYAGVAVTPAASGQSALDLLNSEAPFDLVLMDIQMSDMDG 887

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI- 120
              T+Q+++D   + +PV+A+TA AM  D E+  + G + +I KPI        + ++I 
Sbjct: 888 YATTRQLRQDPRFKTLPVVAMTAHAMVSDREKALQLGMQDHIPKPIEPEQLFAALVQWIK 947

Query: 121 -GEA 123
             +A
Sbjct: 948 PRQA 951



 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           +V++V+DN    ++  + +           +G  AL++      P++I++D Q+  +SG+
Sbjct: 681 RVLVVDDNATAREILEEQLNAFHMEVCSVASGEAALDVLHHEPRPELILLDDQMTGLSGV 740

Query: 63  EITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E  ++++    L  IP V+ ++    +   +     G   ++ KPIS S+ +ET+
Sbjct: 741 ETVRRLRGQINLARIPEVLMLSDHGREKVRQEAEALGITHFMCKPISPSVLLETL 795


>gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D++  +      ++  GY  ++   G +AL+   + K  +++MD+ + E+ GL  
Sbjct: 6   ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVMMPELDGLSA 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T +I+E+     IP+I ++A +   D+      G + Y++KP +    +  +K  +  
Sbjct: 66  TVKIREEL---NIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLRR 120


>gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933]
 gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai]
 gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073]
 gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T]
 gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301]
 gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046]
 gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227]
 gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197]
 gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. W3110]
 gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89]
 gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536]
 gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1]
 gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638]
 gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A]
 gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS]
 gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739]
 gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5]
 gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94]
 gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99]
 gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11]
 gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469]
 gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1]
 gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88]
 gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a]
 gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989]
 gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39]
 gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026]
 gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972]
 gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9]
 gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B]
 gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220]
 gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103]
 gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412]
 gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354]
 gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101]
 gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736]
 gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR
 gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR
 gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR
 gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR
 gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC
           and ompF: outer membrane protein synthesis [Escherichia
           coli O157:H7 str. EDL933]
 gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073]
 gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli]
 gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
 gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri]
 gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai]
 gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T]
 gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301]
 gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046]
 gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF
           [Shigella dysenteriae Sd197]
 gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227]
 gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K12 substr. W3110]
 gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89]
 gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536]
 gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1]
 gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
 gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS]
 gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A]
 gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5]
 gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC
           3083-94]
 gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis
           Et1/99]
 gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli]
 gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli]
 gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli]
 gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli]
 gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli]
 gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11]
 gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli 55989]
 gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia fergusonii ATCC 35469]
 gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI1]
 gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli S88]
 gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI39]
 gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli ED1a]
 gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli UMN026]
 gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82]
 gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972]
 gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli O157:H7 str. TW14359]
 gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15]
 gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017]
 gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM
           12163]
 gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042]
 gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
           29220]
 gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103]
 gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412]
 gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354]
 gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034]
 gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
 gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101]
 gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU
           83972]
 gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146]
 gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617]
 gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC
           BAA-2158]
 gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str.
           2457T]
 gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli W]
 gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1]
 gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1]
 gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3]
 gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1]
 gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3]
 gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431]
 gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae
           CDC 74-1112]
 gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC
           796-83]
 gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli
           WV_060327]
 gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli
           EC4100B]
 gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str.
           493-89]
 gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H
           2687]
 gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           LSU-61]
 gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14]
 gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010]
 gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G]
 gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68]
 gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180]
 gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357]
 gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1]
 gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2]
 gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3]
 gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227]
 gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1044]
 gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1125]
 gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v]
 gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355]
 gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli
           AA86]
 gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82]
 gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae
           155-74]
 gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74]
 gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88]
 gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671]
 gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70]
 gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71]
 gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71]
 gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
 gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6]
 gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272]
 gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218]
 gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304]
 gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|315921700|ref|ZP_07917940.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695575|gb|EFS32410.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1334

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y+     NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 1069 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+ + IK + E   IPVI +TA   + D     + G + Y+ KP ++ I    +   +  
Sbjct: 1128 ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|326201364|ref|ZP_08191236.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988932|gb|EGD49756.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV+I+ED E      +   +   +I ++   G E L  ARQ  PDV+++D+ L  IS
Sbjct: 1   MESKVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ + +++  EL  + +I +TA     D+ +  + G + Y+ KP + +  +   K  +
Sbjct: 61  GFQVCETLRK--ELPGVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|163849959|ref|YP_001638002.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163661564|gb|ABY28931.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 247

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D+     L  + +  +G       +G +        + D++++D+ +    GL 
Sbjct: 6   HVLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQMRAFLDADRVDLVVLDVMMPGDDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     +  PV+ +TA + + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  LCRELRS-GRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRR 123


>gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|152998342|ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839266|gb|ABR73242.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 244

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGLE 63
           + +V+D++    L +  +E   +  L   +G   L   R + + D++I+DI L    G  
Sbjct: 7   IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++  S+   +PVI +TA + + D     + G + Y++KP +    +  IK  +  
Sbjct: 67  VCRSLRTQSQ---VPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122


>gi|115360939|ref|YP_778076.1| two component AraC family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|115286267|gb|ABI91742.1| two component transcriptional regulator, AraC family [Burkholderia
           ambifaria AMMD]
          Length = 277

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   +++L  +++ ++        +G++A   A+   PD+I+MD+++  + G 
Sbjct: 20  AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRMDGF 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              + +      Q IP+I +TA A   D     + G   YI KP      +  I+ ++  
Sbjct: 80  AACRLLASTPSTQNIPIIILTAAADLDDRIAGLETGALDYIVKPFEPVEVIARIRNHLKR 139

Query: 123 A 123
           A
Sbjct: 140 A 140


>gi|330812352|ref|YP_004356814.1| response regulator, CheY family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380460|gb|AEA71810.1| putative response regulator, CheY family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 121

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 67/119 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IV+D+   M     ++E  G+  L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARVLIVDDSPTEMYKLTGMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+Q+ +D +   IPVI +T      D+    + G + Y++KP+     + T+ K +
Sbjct: 61  FQATRQLTKDPDTGHIPVIIITTKDQDTDKVWGTRQGAKDYLTKPVDEETLIATLNKVL 119


>gi|317477648|ref|ZP_07936861.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316906188|gb|EFV27929.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 630

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++++IVEDN+       D+   +GY      NG EAL + R+  PD++I DI + E++G 
Sbjct: 462 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMTGD 520

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
           E+   IK + E+  IPV+ +TA   + +     K G +AYI KP S+ I   T+K  +  
Sbjct: 521 ELCSIIKGNLEMSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNILAN 580

Query: 122 EA 123
            A
Sbjct: 581 RA 582


>gi|294636584|ref|ZP_06714945.1| putative diguanylate cyclase/response regulator [Edwardsiella tarda
           ATCC 23685]
 gi|291090171|gb|EFE22732.1| putative diguanylate cyclase/response regulator [Edwardsiella tarda
           ATCC 23685]
          Length = 318

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D  LN++L    +    +      NG +AL +     PD++++DI++ +++GLE
Sbjct: 20  RLLIVDDEPLNIQLL-YQLFADDHTVFMATNGQQALNICMNQHPDLVLLDIEMPDMNGLE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K   + Q+IPVI +TA   +  E    + G   +ISKPI+ +I    +  ++
Sbjct: 79  VCQRLKAAPQTQDIPVIFITAHIDENSETAGLRAGAVDFISKPINHNIVRARVNTHM 135


>gi|239989346|ref|ZP_04710010.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 256

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+    +  +  +E  GY      +G+  LE  R    D++I+D+ L  + G+ +
Sbjct: 27  VLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAHDLLILDVMLPALDGIGL 86

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I+E+S    +PV+ ++A     D     + G + Y+ KP+  ++ +  I+  +  A
Sbjct: 87  CHRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRRA 142


>gi|227327463|ref|ZP_03831487.1| two-component system regulatory protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V+I+ED+     +    +   GY      +G   L +A   KPD+I++D+ L +++G 
Sbjct: 4   KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQRGLHMALTSKPDLILLDVMLPKMNGS 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   +++ S    IPVI VTA     +     + G + Y+ KP +    +  ++  +  
Sbjct: 64  EVLSALRQRS---NIPVIMVTAIGDDPERIGALRYGADDYVVKPYNPQEVVARVQAVLRR 120


>gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
          Length = 223

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        R  +  + Y      NG + L LA     D++++D+ L E+ G E
Sbjct: 2   RILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     ++ PV+ +TA     D+    + G + Y+ KP + + F+  I+  +  A
Sbjct: 62  VLRRLRAQ---KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRA 118


>gi|78060490|ref|YP_367065.1| two component AraC family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77965040|gb|ABB06421.1| two component transcriptional regulator, AraC family [Burkholderia
           sp. 383]
          Length = 278

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 57/121 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   +++L  +++  +        +G++A   A+   PD+I+MD+++  + G 
Sbjct: 20  AHILVVDDRPNDLRLLTEILRAARCRISVAFDGLQAYHRAQAIAPDLILMDVRMPRMDGF 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              + +      Q IPVI +TA     D     + G   YI KP   +  +  I+ ++  
Sbjct: 80  AACRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGAIDYIIKPFEPTEVLARIRNHLKR 139

Query: 123 A 123
           A
Sbjct: 140 A 140


>gi|56418841|ref|YP_146159.1| lantibiotic biosynthesis response regulator [Geobacillus
           kaustophilus HTA426]
 gi|56378683|dbj|BAD74591.1| lantibiotic biosynthesis protein (response regulator) [Geobacillus
           kaustophilus HTA426]
          Length = 232

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+E      +  +E   Y      +G+EAL++      D+I++DI ++ I G+
Sbjct: 4   KKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMIND-DFDLIVLDIMMEGIDGM 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   I++  +    P++ V+A  ++ D+ +    G + YI+KP SL      I  ++  
Sbjct: 63  ELCTIIRDRVDY---PIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRR 119


>gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 271

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L    +   G+      +G  A++ AR  +PD +++D+ L ++ GL 
Sbjct: 46  RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLS 105

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++ D  L ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 106 VLGRLRRD--LPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 163


>gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED +    L +   E  G+      +G + L  A+ +  D I++DI L  I GL 
Sbjct: 2   RILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIMLPVIDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K++++ +     PVI +TA     D+      G + Y++KP S    +   K  I  
Sbjct: 62  ILKKLRKQNNT--TPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRR 118


>gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+    +L +  ++  G   ++  +G++AL      K D+++MDI +  + G
Sbjct: 1   MTKLLVVDDDAHIRELVKVFLQNEGLEVIEAIDGVDALSKLDTEKIDMVVMDIMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+  +   ++P++ +TA      + +    G + Y+ KP   +  +  +K  + 
Sbjct: 61  WALCEEIRSFNT--DLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D+    +L    ++  GY  +   +G EAL     +    ++I+D+ +  ++GL
Sbjct: 2   KILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTNPDIALMILDVMMPNMNGL 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K +++DS    IP++ ++A +   D+ +    G + Y++KP +    M  ++  +  
Sbjct: 62  EVVKVVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 123 A 123
           A
Sbjct: 119 A 119


>gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 231

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D++  ++     +   G+  ++  +G EALEL  +++ +++I+D+ +  + G
Sbjct: 1   MPTILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLEKNEVNLMIVDVMMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +++E      IP+I ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 61  IRTTLKVRE---TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|256059197|ref|ZP_05449403.1| response regulator PleD [Brucella neotomae 5K33]
 gi|261323146|ref|ZP_05962343.1| response regulator receiver modulated diguanylate cyclase [Brucella
           neotomae 5K33]
 gi|261299126|gb|EEY02623.1| response regulator receiver modulated diguanylate cyclase [Brucella
           neotomae 5K33]
          Length = 461

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI +T      D+ R  + G E ++SKP++    +  +K   
Sbjct: 61  GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+++EL     R ++    Y      +   AL  A +   D II+         L
Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++  Q++     + IP+I +          R  + G   Y+ +P+        ++  I  
Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278


>gi|298530375|ref|ZP_07017777.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509749|gb|EFI33653.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 301

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 73/119 (61%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            +++IV+D ++N+++  DL++   Y  +  R+G +AL+LA Q   PD+I++DI +  +SG
Sbjct: 6   ARILIVDDEKINLRVLADLLKDK-YTIMLARSGEQALKLAHQEPRPDLILLDIAMPGMSG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ K++K D     IPVI +TA   +  EE+  K G   YI+KPIS  I    ++ Y+
Sbjct: 65  FEVIKKLKHDDATNHIPVIFITALDSREQEEKGLKLGAVDYITKPISPPIVKIRVRNYL 123


>gi|171315888|ref|ZP_02905118.1| two component transcriptional regulator, AraC family [Burkholderia
           ambifaria MEX-5]
 gi|171098984|gb|EDT43772.1| two component transcriptional regulator, AraC family [Burkholderia
           ambifaria MEX-5]
          Length = 277

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   +++L  +++ ++        +G++A   A+   PD+I+MD+++  + G 
Sbjct: 20  AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRMDGF 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              + +      Q IPVI +TA A   D     + G   YI KP      +  I+ ++  
Sbjct: 80  AACRLLASTPATQNIPVIILTAAADLEDRIAGLETGALDYIVKPFEPVEVIARIRNHLKR 139

Query: 123 A 123
           A
Sbjct: 140 A 140


>gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +  +  R  +   G+      +G  AL  A     D++++D+ L +  GL+
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PV+ VTA     D  +    G + Y+ KP  L      ++  I  
Sbjct: 62  VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118


>gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++M+VED     +    L++  GY      +G  A+    +   D+I++D+ L  + G
Sbjct: 1   MTRIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVAAFEKDGTDLILLDLMLPGLPG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+  S    +P+I +TA   + D     + G + Y++KP S    +  I+  + 
Sbjct: 61  TEVCREIRTRSA---VPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|148977340|ref|ZP_01813954.1| putative two-component response regulator [Vibrionales bacterium
           SWAT-3]
 gi|145963453|gb|EDK28717.1| putative two-component response regulator [Vibrionales bacterium
           SWAT-3]
          Length = 220

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN        D +E  G+      NG  A++L  + + D+II+DI +  ++GL 
Sbjct: 2   RILVAEDNHATAANLGDYLELFGHDIDFAYNGQAAIQLLGEARFDLIILDIMMPVMNGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
               I+      +IP+I +TA    GD+    K G + Y+ KP  L      ++  
Sbjct: 62  ACSAIRA-GRHADIPIIFLTARDTLGDKLAGFKAGADDYLVKPFELQELHARVEAL 116


>gi|94967535|ref|YP_589583.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549585|gb|ABF39509.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 427

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 62/120 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + +++V+D+     L ++L+   GY+     +  EA        PD+I++D+Q+   +G
Sbjct: 110 SQHILVVDDSPELAMLMQELLAAHGYLVQLAYSAAEAEREIAGRPPDLILLDVQMPGKNG 169

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +++K++ E + IP++ +T    + +  R  + G + +++KPI        +K  + 
Sbjct: 170 YDLCRELKDNPETRLIPIVMITGLTDRENRIRGIESGADEFLNKPIFPEELFARVKSLLR 229


>gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|329961691|ref|ZP_08299737.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328531563|gb|EGF58400.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1338

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             K++IVEDN    ++  ++     Y  L   +G E L L     P++++ D+ + ++SG 
Sbjct: 1080 AKILIVEDNASIREMLANIFHPF-YEVLTAPDGEEGLALVHSEMPNIVVSDVVMPKMSGT 1138

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ KQIK D     IPV+ +TA           + G + YI+KP + ++ +      +
Sbjct: 1139 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1196


>gi|317493397|ref|ZP_07951818.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918340|gb|EFV39678.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 236

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 1   ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M+    +++++D+     L  +    +G+  +   +G + ++  +Q   D+II+D+ +  
Sbjct: 1   MMLPYSLLLIDDDAEIRSLLTEYFTRAGFSVIALPDGEKLMQTLQQQSVDLIILDVMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G  + + ++       +P+I +TA + + D+    + G + Y++KP S    +  +K 
Sbjct: 61  MDGFTLCRMVR---NTSSVPIIMLTAASDETDKVIGLELGADDYLAKPFSARELLARVKA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 LLRR 121


>gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 235

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++++ED+    ++    +   GY      +G E L    +H  D++++D+ + ++ 
Sbjct: 1   MPQHILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLMMPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +QI+  S    +P++ ++A     D+      G + Y++KP S+      I+  I
Sbjct: 61  GMEVIRQIRTRSA---VPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|260173428|ref|ZP_05759840.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1290

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y+     NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 1025 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1083

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+ + IK + E   IPVI +TA   + D     + G + Y+ KP ++ I    +   +  
Sbjct: 1084 ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1143

Query: 122  EA 123
             A
Sbjct: 1144 RA 1145


>gi|253700815|ref|YP_003022004.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
 gi|251775665|gb|ACT18246.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
          Length = 452

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    KL   L+   GY     RNG +ALE   + +PD++I DI + E+ G E+
Sbjct: 14  ILIVDDSPTQAKLLEQLLAGEGYRVAVARNGSDALEQINERRPDMVISDILMPEMDGFEL 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E   ++E P++ +T      D     + G   ++SKP S  + +  I+  +
Sbjct: 74  CRRVREMESIKETPIVLLTHLNDPSDVLHSLEAGANYFVSKPYSDKLLLNRIRAIL 129


>gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
 gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++++D    +++ +  +E  GY  +Q  +G+EAL+   +  PD++I+D+ L +IS
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+E+SE   +P+I +TA + +         G + YI+KP S    +  +   +
Sbjct: 61  GENVCERIREESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|90994534|ref|YP_537024.1| hypothetical chloroplast protein 29 [Porphyra yezoensis]
 gi|122244619|sp|Q1XDE4|YCF29_PORYE RecName: Full=Probable transcriptional regulator ycf29
 gi|90819098|dbj|BAE92467.1| unnamed protein product [Porphyra yezoensis]
          Length = 222

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 66/122 (54%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+M+VE++ +  K  ++ +   G+      NG+EAL LA Q+  D+II DI +  ++
Sbjct: 1   MSYKLMLVENDIVLSKAIQEYLIDQGFNVYIANNGLEALNLAYQYNFDLIISDIMMPLVN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+  ++K++  L +IPVI +TA  M  D  +    GC  Y+SKP   +  +  I   I
Sbjct: 61  GYELLAKLKKNKALSKIPVIFLTAKGMTKDRIKGYDMGCYGYLSKPFDPNELLSIINNLI 120

Query: 121 GE 122
             
Sbjct: 121 AR 122


>gi|78777953|ref|YP_394268.1| two component transcriptional regulator [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498493|gb|ABB45033.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas denitrificans DSM 1251]
          Length = 220

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED+    ++  + ++  G+  +   +  +A+ + +    D++I+D+ L  + G
Sbjct: 1   MKKILMIEDDLELAEILTEYLQQFGFDVVTEDDPFKAVSILKLEPFDLVILDLTLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I+E    Q+IP+I  +A +   D+ +  + G + YI KP         I   + 
Sbjct: 61  LEVCEAIRER---QDIPIIISSARSDVTDKVKALELGADDYIPKPYDPRELEARIHSVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|42526008|ref|NP_971106.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
 gi|41816058|gb|AAS10987.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
          Length = 369

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 21/139 (15%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+IVED+E      R  +E  GY  L   +G  ALEL     PD++++DI L +++G
Sbjct: 1   MNKVLIVEDDEGIADFLRFELEHEGYSVLHAGDGRTALELFESDTPDILLLDIMLPQLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-------------- 107
           LE+ ++I++      +PVI +TA     D+      G + Y++KP               
Sbjct: 61  LEVLRRIRK---TSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIGASNLDERLPVT 117

Query: 108 ----SLSIFMETIKKYIGE 122
                     +T    +  
Sbjct: 118 DKGDDFDELAKTFNNLLSR 136


>gi|27376076|ref|NP_767605.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349215|dbj|BAC46230.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 306

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 62/118 (52%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+   ++L  D ++ +G   +   +G  A+ +  Q  PD++++D  +  I G E  
Sbjct: 12  LVVDDSPETLRLLTDALDGAGMTVMVALDGAAAMRIVEQITPDIVLLDAVMPGIDGFETC 71

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +++K D+ L  +PVI +T  A      R    G   Y++KPI +   +  I+ ++G A
Sbjct: 72  RRLKRDAGLANVPVIFMTGLAETEHIVRGLDAGGVDYVTKPIVIEEMLARIRVHLGNA 129


>gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 230

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D      L    +  +G+      +G + +    + +PD+II+D+ L +++G  
Sbjct: 6   KILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVMLPDMNGFG 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +TK+++        P++ +TA     D+      G + Y++KP SL   +  IK  +  
Sbjct: 66  VTKRLRASGYTS--PILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRR 122


>gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1314

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 3/122 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---PDVIIMDIQLQEIS 60
             V++VED++LNM++ + ++E  G   +  ++G EAL L  Q +    D I+MD+Q+  + 
Sbjct: 979  HVLLVEDHDLNMEVAKAILERVGIRVITAQHGGEALALLEQTEGAAFDAILMDLQMPVMD 1038

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E T+ I+  +   + P+IA+TA A   D ER  + G   +I+KPI+  +    ++++I
Sbjct: 1039 GFETTRVIRSKTAWAQPPIIALTANAFSQDRERALQVGMNDHITKPIAPGLLYAALERWI 1098

Query: 121  GE 122
              
Sbjct: 1099 DR 1100


>gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++++ED     +     +   GY      +G    E A     D+II+D+ L E+S
Sbjct: 1   MKTRILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLMLPELS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++++S   ++P+I +TA     D+      G + Y++K  ++   +  I+  +
Sbjct: 61  GIEVCRRVRKES---DVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVIL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|319744078|gb|EFV96455.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 223

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDN +  K+    +   GY  +   NG EAL      +  +II DI +  + G
Sbjct: 1   MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ ++++  S    +P+I +TA +   D  +    G + Y+ KP+ L      IK  + 
Sbjct: 61  YQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|196234682|ref|ZP_03133496.1| response regulator receiver protein [Chthoniobacter flavus
           Ellin428]
 gi|196221255|gb|EDY15811.1| response regulator receiver protein [Chthoniobacter flavus
           Ellin428]
          Length = 121

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 74/119 (62%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++VEDNE+N  +    +E  GY  +   +G + +  A++H+PD+I+MD+ L  + G
Sbjct: 1   MKKLLLVEDNEMNRDMLSRRLERRGYQVVIAVDGEQGITAAKEHRPDLILMDMSLPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+++K++ + Q IPV+A+TA AM G+ ++    GC  Y +KP+     +  I+  +
Sbjct: 61  WESTRRLKQEPDTQAIPVLALTAHAMAGERDKALAAGCSDYDTKPVDFVRLLGKIESLL 119


>gi|157374787|ref|YP_001473387.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157317161|gb|ABV36259.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1374

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 74/120 (61%), Gaps = 3/120 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60
            KK+++V+D+  N+     ++E  G   +  R+G+E++E   QH PD  +I+MDI + ++ 
Sbjct: 1255 KKILLVDDDMRNVFALSSILEDKGIEIVVGRDGLESIEKLDQH-PDIALILMDIMMPKMD 1313

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G +  K+I++  + +++P+IA+TA AMKGD  +  + G   Y++KP+     +  ++ ++
Sbjct: 1314 GYDAMKEIRKKRKYKKLPIIALTAKAMKGDRSKCIEAGASDYLAKPVDTDKLLSMLRVWL 1373



 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++I+ED+     + RD     G+  +    G   L  A  +KP  II+DI L  I G 
Sbjct: 987  QTLLIIEDDRAFAGVMRDFGRERGFKCIVAETGETGLHFADYYKPSAIILDIGLPGIDGW 1046

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKY 119
             + +++KE+SEL+ IPV  ++A     D     + G   Y++KP+ L+   +T   I++ 
Sbjct: 1047 TVMERLKENSELRHIPVHFMSASDNNLD---AMRMGAIGYLTKPVDLNKLNKTFGDIEEI 1103

Query: 120  IGEA 123
            I ++
Sbjct: 1104 IAKS 1107



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK++IVED+E+  +  R L+       +    G +AL+    ++ D +I+D+ L+++SG 
Sbjct: 1109 KKLLIVEDDEIQRESIRQLLGEGDIHIVGVATGKQALQELETNRYDCMILDLGLEDLSGF 1168

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114
            E+  +I+       +P+I  T   +  DEE+      E+ I K + S    ++
Sbjct: 1169 ELLDKIRRSDSAARVPIIVYTGRELTVDEEKELSRYAESIIIKGVKSPERLLD 1221


>gi|332304516|ref|YP_004432367.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171845|gb|AEE21099.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 239

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED+     L R  +   G       +G  AL  A ++   VI++D+ L  ++
Sbjct: 1   MTDRILIVEDDLDIANLMRVNLLELGVEIDHQTDGQLALTQALENDYSVILLDVMLPNMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I +QI+ D    +I +I +T+   + D     + G + Y++KP S+      ++  +
Sbjct: 61  GLDICRQIR-DKRPMQI-IIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQL 118

Query: 121 GE 122
            +
Sbjct: 119 RK 120


>gi|323699566|ref|ZP_08111478.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459498|gb|EGB15363.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 953

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 5/117 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISGL 62
           +++ +DN +N K  +  +   G+  +   NG+EALE+ R      DV++MD+Q+ E+SGL
Sbjct: 697 ILLADDNPMNRKYLQHFLTMFGHTVVTAENGLEALEVLRDRGRTVDVVLMDVQMPEMSGL 756

Query: 63  EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E T+ I+E       + IP+IA+TA+AMKGD ER+ + G + Y+SKP+ +    E I
Sbjct: 757 EATRAIRESDGRQYDRRIPIIALTAYAMKGDRERMLEAGMDDYVSKPVDMHALSEAI 813


>gi|238790319|ref|ZP_04634092.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           frederiksenii ATCC 33641]
 gi|238721583|gb|EEQ13250.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           frederiksenii ATCC 33641]
          Length = 312

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D+ +N+++   +  +  Y      +G +AL++     PD+I++DI++ E++G E
Sbjct: 12  KILIVDDHPINIQMLYQVFSSD-YHVCMATSGKQALDVCVSQHPDLILLDIEMPEMNGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  ++K   E Q+IPVI VTA   +  E R    G   +ISKPI+ +     +K ++
Sbjct: 71  VCTRLKALPETQDIPVIFVTAHIDEETETRCFSEGAVDFISKPINRNTVRARVKTHL 127


>gi|159897122|ref|YP_001543369.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890161|gb|ABX03241.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 397

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +V+ +EDN  N +L R ++ T GY  +   +G E  + A+  +PD+I+MDI L  ++G
Sbjct: 4   STRVLYIEDNHDNQRLVRRVLATRGYQIIIANDGNEGWKSAQTDRPDLILMDINLPGLNG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+T + K   +L  +P++A+TA    GD ER    GC+ YISKPI      + +  YIG
Sbjct: 64  YELTTKFKATPQLASVPIVALTANTTPGDRERALAAGCDGYISKPIDPRALPDLVASYIG 123


>gi|15838927|ref|NP_299615.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|9107507|gb|AAF85135.1|AE004044_6 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
          Length = 241

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVEDN    ++  + +E  G+      +G++   LA ++  DV+++D+ L  + G+E+
Sbjct: 15  VLIVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAVENSYDVVVLDLMLPRLDGIEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q+++D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 75  CRQLRKDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 131


>gi|83312977|ref|YP_423241.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947818|dbj|BAE52682.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1177

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEI 64
            ++V+D+  N      ++   G   L  ++G +AL   +     D+++MDI +  + G + 
Sbjct: 1053 LLVDDDMRNAFALSKVLRARGLKVLIAQDGAKALSQLQSRADVDLVLMDIMMPGMDGYQT 1112

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I++D     +P+IA+TA AM GD +R    G + Y++KP+ +    + +   I  
Sbjct: 1113 MGEIRKDPRFAHLPIIALTAKAMAGDRDRCLAAGADDYLTKPVDVERLRQVMALLIRR 1170



 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED+ +  ++  D+ +  G+      +G   LELAR  +P  +++DI L ++SG E+ 
Sbjct: 785 LVIEDDPIFRRVVCDMAQAKGFATATAGDGKTGLELARLRRPSGVVLDIGLPDMSGWEVI 844

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           + +K   E ++IPV  ++A    G   R  + G   +++KP+S    
Sbjct: 845 EALKLQPETRDIPVHVMSAGDEPG---RAARLGTVGHLTKPVSREQI 888



 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           V+ +E +     + +            G  ALE       D +++D+ L +++G E  + 
Sbjct: 910 VDGDEASRATIGETLVGLDLDITVAETGQVALEHLAAGPFDCMVLDLALSDMAGGEFLE- 968

Query: 68  IKEDSELQEI-PVIAVTAFAMKGDE 91
            + +     + PVI  ++  +  D+
Sbjct: 969 -RAERIGSGLPPVIVYSSQELSQDQ 992


>gi|117921855|ref|YP_871047.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. ANA-3]
 gi|117614187|gb|ABK49641.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. ANA-3]
          Length = 338

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   N+ +   ++    Y      +G  AL L  +  PD+I++D+ +  ++G 
Sbjct: 4   ATILVVDDTPENIDILVGIL-GEDYKVKVAIDGPRALALVAKTLPDLILLDVMMPGMNGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K++     IPVI VTA +   DE +  + G   YI+KP+S  +    ++ ++
Sbjct: 63  EVCKLLKQEPLTCHIPVIFVTALSEVADETQGFELGAVDYITKPVSAPVVKARVRTHL 120


>gi|167037177|ref|YP_001664755.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|166856011|gb|ABY94419.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
          Length = 318

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 71/117 (60%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+DN+L  K+ +D++E +GY  L+ ++G EAL++ R   PD++I+DI +  ++G 
Sbjct: 12  RNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIYRNKLPDMVILDIVMPGMNGF 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           ++ + ++++ E   +P+I +T+     ++ +  + G + Y+ KP +    +  +   
Sbjct: 72  DLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNNL 128


>gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1202

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++ EDN +NMK+   ++   GY A    NG EA++       DV++MD+Q+ ++ GLE
Sbjct: 1079 KILLAEDNPVNMKVALLMLNKLGYKADVVSNGEEAVQALSHKHYDVVLMDVQMPKMDGLE 1138

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-IGE 122
             T+ I +   +    ++A+TA+A++GD +R    G + YISKP+ +      ++   IG 
Sbjct: 1139 ATRAILDMDLVDRPRILAMTAYALEGDRKRCLDAGMDGYISKPVQIDELRAALQALNIGR 1198


>gi|295101501|emb|CBK99046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 978

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 5/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59
           + +++VEDNELN ++ ++++   G+      NG  A+E      P   D+++MD+Q+  +
Sbjct: 856 RHILLVEDNELNREIAQEILREYGFRVDTAENGEVAVEKVSTAAPGSYDLVLMDVQMPVM 915

Query: 60  SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G   T++I+   D    ++P++A+TA A   D     + G   ++SKPI +   ++ ++
Sbjct: 916 DGYTATRKIRALDDPARAKLPILAMTANAFDEDRRNALESGMNGFLSKPIVIGDLVQELR 975

Query: 118 KYI 120
           K +
Sbjct: 976 KIL 978



 Score = 96.7 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           K ++V+D+         ++   G  A  T +G EA+  ARQ           I+D +L +
Sbjct: 715 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDAYHAYIIDWRLPD 774

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+E+T+QI   ++  + P+I +TA+     E   +  G  A+  KP+ +S   ET+  
Sbjct: 775 MNGIEVTRQICSLND--DTPIIILTAYDWSDIEVEAKAAGVTAFCEKPMFMSDLRETLMS 832

Query: 119 YIGE 122
            +G+
Sbjct: 833 ALGQ 836


>gi|291547625|emb|CBL20733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E    L +D +E SG+       G   L  A + + D+II+D+ L E+ G
Sbjct: 1   MSRILIIEDEEAIADLEKDYLELSGFEVEIENRGDTGLVRAMKEEFDLIILDLMLPEVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I +Q++E+   +  P+I V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FDICRQVREE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHME 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|258591511|emb|CBE67812.1| Response regulator receiver protein [NC10 bacterium 'Dutch
           sediment']
          Length = 397

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 57/115 (49%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D+    +L    +++ GY  +Q  +G +A +L +      +I D  +  + GLE
Sbjct: 2   RILIVDDDVDMRRLLLHTLQSWGYDVVQAIDGAQAWDLLQNEPFSFVITDWIMPNLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + ++I+     + I +I +TA   K +  +  + G + ++ KP +       I+ 
Sbjct: 62  LCRRIRGARFTRYIYIILLTAKHSKEELIKGMEAGADDFLIKPFNAGELKVRIRA 116


>gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
 gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L  +L    +  +GY       G   + L  Q   D +I+D+ L  + GL
Sbjct: 4   KRILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGWDALILDLMLPGVDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I ++++     +  P+I ++A + +       + G + Y++KP S+   +  +K     
Sbjct: 64  DICRRVRAM--TRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFRR 121


>gi|227484748|ref|ZP_03915064.1| response regulator VanRG [Anaerococcus lactolyticus ATCC 51172]
 gi|325846324|ref|ZP_08169314.1| response regulator receiver domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|227237270|gb|EEI87285.1| response regulator VanRG [Anaerococcus lactolyticus ATCC 51172]
 gi|325481588|gb|EGC84627.1| response regulator receiver domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 227

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED+E  + L    +E   YI  +     EA+   ++ + D+ I+DI L +  
Sbjct: 1   MNYSVLVVEDDESILDLIEIYLENENYIIKKATCSEEAIRYIKEEEFDLAILDIMLPDKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+E       P+I +T+   +  + +    G + Y++KP      +  +K  +
Sbjct: 61  GYYLCKKIRESFNY---PIIMLTSKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016]
 gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 233

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++++D++    L R  +      A    +G + L + +++   +I++D+ +  + 
Sbjct: 3   MSYKILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMD 62

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  ++I++      +P++ +T+      + R  + G + Y++KP  +   +  +   I
Sbjct: 63  GFQTMEKIRQ---TSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLI 119

Query: 121 GE 122
             
Sbjct: 120 RR 121


>gi|218710599|ref|YP_002418220.1| putative response regulator [Vibrio splendidus LGP32]
 gi|218323618|emb|CAV19887.1| putative response regulator [Vibrio splendidus LGP32]
          Length = 244

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  K +++V+D++  +    + +E S +  +    G E  +      PD+II+DI L   
Sbjct: 9   MTNKVILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGD 68

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GL + ++++  S+   +P+I +TA     D     + G + YI+K  +    +  IK  
Sbjct: 69  DGLTLCQKLRLQSQ---VPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKAL 125

Query: 120 IGEA 123
           +  +
Sbjct: 126 LRRS 129


>gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
 gi|217985979|gb|EEC52318.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
          Length = 1334

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDNE    L   L     Y   + ++G E  E  ++ +PD+++ DI + ++SG+E
Sbjct: 1085 KIIIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK + E   IPVI +TA   +    +  K G + Y++KP ++          +
Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1200


>gi|119488888|ref|ZP_01621850.1| adenylate cyclase [Lyngbya sp. PCC 8106]
 gi|119455049|gb|EAW36191.1| adenylate cyclase [Lyngbya sp. PCC 8106]
          Length = 657

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D  +N+ L   ++ T GY      +G+ AL   +   PD+I++DI + E+ G 
Sbjct: 11  KSILVVDDTPINLTLLTRMLTTQGYEVRVAPSGVLALRSVQMSPPDLILLDIMMPEMDGY 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
              + +K+ +E +EIP+I ++A     D+ +  + G   YI+KP  L+  +  I+ +
Sbjct: 71  HFCRLLKDQAETREIPIIFLSALDDASDKVKAFEMGGVDYITKPFQLTEVLARIENH 127


>gi|157960458|ref|YP_001500492.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella pealeana ATCC 700345]
 gi|157845458|gb|ABV85957.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella pealeana ATCC 700345]
          Length = 339

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++V+D   N+ +   ++    Y      +G +AL LA +  PD+I++D+ +  ++G 
Sbjct: 4   ATVLVVDDTPENIDILVGILGGD-YKVKVAIDGPKALALASKSSPDLILLDVMMPGMNGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K++K++     IPVI VTA     DE +  + G   YI+KP+S  +    +K ++
Sbjct: 63  EVCKRLKQEPLTNHIPVIFVTALTEVADETQGFELGAVDYITKPVSAPVVKARVKTHL 120


>gi|118477336|ref|YP_894487.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416561|gb|ABK84980.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 247

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++     +   G+  L   NG EAL++   +   + I+DI +  + G+E+
Sbjct: 21  ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 81  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135


>gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1681

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 65/114 (57%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN+LN +L  +L+  +G       +G+EA+E   Q   D ++MD Q+  + G E 
Sbjct: 1345 VLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIERIEQQYFDCVLMDCQMPVLDGYEA 1404

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T++I+E  E   +P++A+TA AM GD E+    G    I+KP+ +      + +
Sbjct: 1405 TRRIRELPEFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMAR 1458


>gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568]
 gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
 gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica
           W22703]
          Length = 239

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|329924862|ref|ZP_08279811.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
           HGF5]
 gi|328940359|gb|EGG36686.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
           HGF5]
          Length = 224

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IV+D     KL  D  E +GY  +  +N  EA++   Q  PD++++DI + E +G
Sbjct: 1   MHKILIVDDEADLRKLLTDYFEINGYFVMTAKNSREAMQKVEQG-PDLVLLDINMPEENG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI ++I+        P++ +TA     D+    + G + YI KP S+      ++ ++ 
Sbjct: 60  LEICERIR---GFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 306

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 1   MLKK---------VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVII 51
           M+           V++ +D+   + L  D +E +    L    G +AL +A++ +PD+I+
Sbjct: 1   MMNTTSDLVRSEVVLVADDSPDALSLIHDTLEAANMDVLVALEGKQALTIAKRIRPDIIL 60

Query: 52  MDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           +D  +  + G E  K +K D  L  IPVI +T  +   D  R  + G   Y++KPI  + 
Sbjct: 61  LDAIMPTMDGFEACKALKADPNLSTIPVIFMTGLSDTDDIVRGLEAGGVDYLTKPIQPNE 120

Query: 112 FMETIKKYIGEA 123
            +  ++ ++  A
Sbjct: 121 LIARMRVHLNNA 132


>gi|302542098|ref|ZP_07294440.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302459716|gb|EFL22809.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1823

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    +++MDI + E+ G 
Sbjct: 1703 KVLIVDDDIRNVFALTSVLEQHGLQVLYAENGREGIEVLEQHDDVVLVLMDIMMPEMDGY 1762

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  +++++
Sbjct: 1763 ATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIEAGASDYVTKPVDTDHLLTVMEQWM 1820


>gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905]
 gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905]
          Length = 230

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED  +  K+    ++ SGY      +G EALEL   ++ D+II+D+ L ++ G+E
Sbjct: 2   KLLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNLPKMDGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +QI+  SE  ++ ++ ++A +   D+      G   Y+ KP         I+  +  
Sbjct: 62  VLEQIRVQSE--DVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRR 118


>gi|88860719|ref|ZP_01135356.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2]
 gi|88817314|gb|EAR27132.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2]
          Length = 227

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++VED     ++  D +   G+      +G +A+   +  +PD +I+D+ L    
Sbjct: 1   MATKVLVVEDEVKIAQILVDFLTLDGFEVTTIHDGADAVLQIKNQQPDFVILDLMLPNKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I K++++      +P++ +TA   + D     + G + Y+ KP      +  +K  +
Sbjct: 61  GLTICKEVRQ---FSNVPILMLTARVDEIDRLMGLEFGADDYVCKPFLPREVVARVKTIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|119776626|ref|YP_929366.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119769126|gb|ABM01697.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 120

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 64/120 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++ V+D+    ++    ++T+G+   +  NG EAL+ A+  + D++I D+ +  + G
Sbjct: 1   MKKILAVDDSASMRQMVGFTLKTAGFDVTEACNGDEALKAAQAGQYDLVISDVNMPVMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + + ++     +  P++ +T  +    ++  R  G   +I KP +    + T++K +G
Sbjct: 61  ITLIRNLRTLPAYKFTPLLMLTTESGGDKKQEGRAAGATGWIVKPFNPEQLLATVRKVLG 120


>gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891]
 gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891]
          Length = 886

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           +++IVEDN +N K+   L+  +GY      NG  AL+  + +   D+I+MD  +  + G 
Sbjct: 766 RILIVEDNRVNQKVASLLLAKAGYQFDIADNGQIALDKFQSEEHYDLILMDCMMPVMDGF 825

Query: 63  EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T++I++      L + P+IA+TA  +  D +R  + G +AY++KP+     +  I   
Sbjct: 826 TATREIRQIETECGLTKTPIIALTASVLDDDIQRCFESGMDAYVAKPVKKEKLLHEIANV 885


>gi|228912374|ref|ZP_04076064.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228847229|gb|EEM92193.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 214

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED++   +L +  + T  Y  +   +G+E ++   +   D+I++D+ +  ++G E+ K 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I+  S    IP+I +TA   + D+ +    G + YI+KP S  + M  ++  +  +
Sbjct: 62  IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114


>gi|227500882|ref|ZP_03930931.1| two component response regulator [Anaerococcus tetradius ATCC
           35098]
 gi|227216986|gb|EEI82371.1| two component response regulator [Anaerococcus tetradius ATCC
           35098]
          Length = 223

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IVED +  ++L  + +   GY+     +G EAL+LA     D+II+DI L +  G E
Sbjct: 2   KVLIVEDEKKLLRLLEEGLNILGYVTDTASDGEEALDLAYVENYDIIILDINLPKKDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I++ +  +E+ +I +TA +   D  R    G   Y++KP  L      ++  +  
Sbjct: 62  VLRDIRQFN--REVNIIMLTARSDIDDRVRGLDYGANDYMTKPFDLKELDARMRSLLRR 118


>gi|183599417|ref|ZP_02960910.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
 gi|188021661|gb|EDU59701.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
          Length = 231

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED     +L  D ++ +GY     + G E ++  RQ +PD+I++D+ L  + GL I
Sbjct: 11  VLVVEDEPKLGQLLYDYLQAAGYQPSILQRGDEVIDYVRQQQPDIILLDLMLPGMDGLTI 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++     EIP+I VTA   + D     + G + YI KP S    +  +K  +  
Sbjct: 71  CRELRK---FCEIPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRR 125


>gi|148652131|ref|YP_001279224.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571215|gb|ABQ93274.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 223

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D++    L ++ +   G       +G + L   +    D+I++DI + +I G
Sbjct: 1   MTHILLGDDDKELTDLLQEYLTNHGIRCDCAYDGEQVLNKIKSQPYDLIVLDIMMPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + +Q+     L + PVI +TA   + D     + G + YI+KP +    +  I   I 
Sbjct: 61  LNVLRQL---PTLTQTPVIMLTAKGDEIDRIIGLELGADDYIAKPCNPRELLARINAVIK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 232

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED E        L+   G+  +   +G  AL    ++  D++++D+ L  +SG
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNDIDIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K+++    +  +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKELR---LVSNVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|117926505|ref|YP_867122.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610261|gb|ABK45716.1| amino acid-binding domain sensor hybrid histidine kinase
            [Magnetococcus sp. MC-1]
          Length = 1251

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 71/118 (60%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +V++VEDN LN ++    +E +G       NG+  +E+A Q   D++ MDIQ+  + GL
Sbjct: 949  ARVLLVEDNALNQQVAVAFLEQAGMEVAVAENGLRCIEMAEQSHYDLVFMDIQMPVMDGL 1008

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E T+Q+++ S L ++P+IA+TA AM  + E     G + Y++KP+S     + + ++I
Sbjct: 1009 EATRQLRQRSALAKLPIIAMTAQAMPSERECSMVAGLDDYLTKPVSPEAIQQMLVRWI 1066


>gi|317152822|ref|YP_004120870.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943073|gb|ADU62124.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 236

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++++D+    +L    +E  G+    T NG   L  AR ++  +II+D+ L + SG
Sbjct: 1   MNKVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  +++ DS    +PVI +T    + D     + G + Y+SKP  L   +  ++  + 
Sbjct: 61  FNVLSRLRGDSA---VPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 248

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+     L    +  +GY       G  A+  A + +PD+I++D+ L +I G  +
Sbjct: 15  VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           T+ ++ +      PV+ +TA     D       G + Y++KP  +   +  I+  +  +
Sbjct: 75  TRHLRAEGVY--TPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRS 131


>gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
 gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
          Length = 232

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG E+LE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|229170768|ref|ZP_04298394.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228612717|gb|EEK69916.1| Two-component response regulator vanRB [Bacillus cereus AH621]
          Length = 214

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED++   +L +  + T  Y  +   +G+E ++   +   D+I++D+ +  ++G E+ K 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I+  S    IP+I +TA   + D+ +    G + YI+KP S  + M  ++  +  +
Sbjct: 62  IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114


>gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010]
 gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010]
          Length = 929

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VEDN  N+ + + LI+  G       NG  AL +  + + D+I MD Q+  + G 
Sbjct: 675 RKILLVEDNSTNIIVAKGLIQMYGPTVEVAENGELALNILSKQRFDLIFMDCQMPVMDGY 734

Query: 63  EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T+ I+ +        IP+IA+TA AM+GD E     G + YISKP+      + +KK+
Sbjct: 735 ECTRLIRSEEASVINHRIPIIALTANAMRGDREACLAAGMDDYISKPVDADTIHQMLKKW 794

Query: 120 IGE 122
           + +
Sbjct: 795 LAQ 797


>gi|224370342|ref|YP_002604506.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223693059|gb|ACN16342.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 873

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I EDN    +L    +E   Y    + NG  A +     KPD++I DI +  + G  +
Sbjct: 549 ILIAEDNVGIQELLAIALER--YTLFISSNGQAAWQAIDGIKPDLVISDIMMPGMDGFSL 606

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++I+ + +   IPVI +T+   + D  +  + G + Y++KP         +K  +
Sbjct: 607 LERIRTNGKTSTIPVIVITSLTEQDDRIKSLQLGADDYLTKPFHHLELQARVKNVL 662


>gi|154504471|ref|ZP_02041209.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149]
 gi|153795246|gb|EDN77666.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149]
          Length = 234

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+     L    +ET  Y      NG +A+  A   KPD++++D+ L ++ G+E+
Sbjct: 6   ILAVEDDTAVRNLITTTLETQDYRFHTAANGAQAILEAASQKPDIMLLDLGLPDMDGVEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+       +P+I ++A +   D+      G + Y++KP S+   +  ++  +  
Sbjct: 66  IKKIRS---WSNLPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVILRR 120


>gi|74317005|ref|YP_314745.1| multi-sensor hybrid histidine kinase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056500|gb|AAZ96940.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 846

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +N K+    +   G       +G EALE       D+++MD Q+ E+ GLE
Sbjct: 610 RILVVEDHPVNQKVLAHQLRAMGLQYTLAASGREALERLGSADFDLVLMDWQMPEMDGLE 669

Query: 64  ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I++        PV+A+TA A  G  E     G   Y+SKP + +  +  + +++
Sbjct: 670 ATRRIRQLPGRAGRTPVVALTANASVGFREACLAAGANDYLSKPYTEAALVALLMQWL 727


>gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 235

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 2   LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +KK   ++IV+D+E   ++   L+   G++  +  N   A+ +  +   D+II+DI +  
Sbjct: 4   MKKNAIILIVDDDEEIREIINILLSREGFVVWEASNANTAMAMLEK-PVDLIILDIMMPG 62

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +G E+  +I++   +  +P++ ++A     D+E     G + Y+ KP S S  +  IK 
Sbjct: 63  RNGFELCTEIRK---ITTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIKA 119

Query: 119 YIGE 122
            +  
Sbjct: 120 LLRR 123


>gi|229489226|ref|ZP_04383092.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
 gi|229324730|gb|EEN90485.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D     +     +   GY      +G  A+    Q   D++++D+ +    GL
Sbjct: 4   RRVLVVDDEVSICESIAARLRAEGYDVELAFDGPSAVARCEQMDADLVVLDVMMPGFDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+    ++ +PV+ +TA A + D       G + Y+SKP S+ + +  ++  +  
Sbjct: 64  EVCRRIQA---VRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRR 120

Query: 123 A 123
           A
Sbjct: 121 A 121


>gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG E+LE+   +   + I+DI + ++ G+E+
Sbjct: 21  ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 81  CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 135


>gi|162295952|gb|ABX83923.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|78355580|ref|YP_387029.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78217985|gb|ABB37334.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 244

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VEDN LN +     ++  GY      NG  ALE   +   D ++MD+Q+  ++GLE
Sbjct: 118 HILLVEDNTLNQEFISLFLQEGGYTVTAADNGTGALENLEKRSFDAVLMDVQMPGMNGLE 177

Query: 64  ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            TK+I+        IPVIA+TA  M GD E     G   Y+ KP++ +     I++ + E
Sbjct: 178 TTKRIRNSGRAWARIPVIALTANNMAGDREYYLASGMNGYVEKPVNKAQLFGEIERCLTE 237

Query: 123 A 123
           A
Sbjct: 238 A 238


>gi|114320304|ref|YP_741987.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226698|gb|ABI56497.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 1/124 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IV+D+    +L  D +  +G  A    +G            D++I+D+ L    
Sbjct: 1   MQANILIVDDDPGLRELLVDYLGQNGLEARAVPDGTALWPALEAGPVDLLILDLMLPGDD 60

Query: 61  GLEITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           GLE+  Q++  D+  + +PVI +TA   + D     + G + Y+ KP +    +  I+  
Sbjct: 61  GLELCGQLRAADAPWRTLPVIMLTARGEETDRIVGLELGADDYLPKPFNPRELLARIRGL 120

Query: 120 IGEA 123
           +  +
Sbjct: 121 LRRS 124


>gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D E    L    +   G+      +G  AL    +  PD++++D+ L +I G  
Sbjct: 6   RVLVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVMLPDIDGFA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++  +  +++P + +TA     D+      G + Y++KP  +S  +  ++  +  A
Sbjct: 66  VCQRLR--NAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRA 123


>gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 624

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++L  +     +    Y+     +G    EL      D+I++D+ L ++ G+ 
Sbjct: 2   RILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+++  E  ++ ++ +TA   K D+      G + Y+ KP         I+  +  
Sbjct: 62  LCRQLRQ--EGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRR 118



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 56/114 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++M+VED+   + + +  +ET G       +     +   +  PD++I+D ++  I+G+
Sbjct: 498 ARIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGI 557

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E+ + ++ D   + +PV+ V         E+I   G +  +SKPI  S  +  I
Sbjct: 558 ELCQVVRNDPCWKLLPVVFVVDNLSADIVEQIFAIGADDCVSKPIVSSTLIACI 611



 Score = 36.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 22/130 (16%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ ++   ++   +  E  G       N   A  +     PDV+++D+ ++E   L++ 
Sbjct: 356 LVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDIEE-DSLKLL 414

Query: 66  KQIKEDSE--------------LQEIPVIAVTAFAMKGD-------EERIRKGGCEAYIS 104
            ++ + S                 +IPV+  T      D          + + G  A++ 
Sbjct: 415 IELSQRSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRLRLEVARAGGRAFLQ 474

Query: 105 KPISLSIFME 114
           K +  +  +E
Sbjct: 475 KSMPPNEILE 484


>gi|325262401|ref|ZP_08129138.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324032233|gb|EGB93511.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D+   +K+ R   E   Y  +    G EA +  R   PD+I++DI +  I 
Sbjct: 1   MQYKILIVDDDTELLKMLRSYFEIKKYEVITACCGAEAFDRIRPE-PDIILLDINMPGID 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ +QI++       P+I +TA   + D       G + YI KP SL      I  ++
Sbjct: 60  GLDVCRQIRDKVM---CPIIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKELEARITAHL 116

Query: 121 GE 122
             
Sbjct: 117 KR 118


>gi|297153701|gb|ADI03413.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 227

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED+   ++     ++   Y      +G  AL LA  H+PDV+++D+ L ++ G
Sbjct: 1   MTRVLVVEDDPQLVRALVINLQARHYDVDAAPDGTTALRLAASHQPDVVVLDLGLPDMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ K ++       +PV+ ++A     ++      G + Y++KP S+   +  ++  + 
Sbjct: 61  VDVIKALR---GWTPVPVLVLSARRASEEKVAALDAGADDYMTKPFSMDELLARLRASVR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas
           albilineans GPE PC73]
 gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas
           albilineans]
          Length = 227

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +     ++  G+     ++G E L + R+   DV I+D+ L ++SG+E
Sbjct: 2   RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++   E ++ PV+ +TA +   D+    K G + Y+ KP  +   +  +   +  A
Sbjct: 62  LIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 119


>gi|269139260|ref|YP_003295961.1| response regulator receiver modulated diguanylate cyclase
           [Edwardsiella tarda EIB202]
 gi|267984921|gb|ACY84750.1| response regulator receiver modulated diguanylate cyclase
           [Edwardsiella tarda EIB202]
 gi|304559168|gb|ADM41832.1| Response regulator [Edwardsiella tarda FL6-60]
          Length = 319

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D  +N+++    +    +      NG +AL +     PD++++DI++ E++GLE
Sbjct: 20  RLLIVDDEPINIQIL-YQLFADDHTVFMATNGQQALNICMNQHPDLVLLDIEMPEMNGLE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K   + Q+IPVI +TA   +  E    + G   +ISKPI+ +I    +  ++
Sbjct: 79  VCQRLKASPQTQDIPVIFITAHIDEAMETTGLRAGAVDFISKPINHNIVRARVNTHL 135


>gi|255035253|ref|YP_003085874.1| multi-sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254948009|gb|ACT92709.1| multi-sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 1118

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I +DN    +  + L+ +  Y  L   NG+EALE+ R+H+P +++ D+ + E+ G+ +
Sbjct: 625 VLIADDNADMRQHIQSLLGSE-YDTLTASNGVEALEIIRRHRPALVLSDVMMPEMDGIAL 683

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            K +K D  + + P+I +TA A +       + G + YI KP S    +   +  + 
Sbjct: 684 LKAVKNDPVIAQTPIILITARAGEESRIEGIEIGADDYIVKPFSSRELIVRAQAQMR 740


>gi|255281933|ref|ZP_05346488.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255267606|gb|EET60811.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 237

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 6/123 (4%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           +KK  ++I+ED+    +  R L+E   Y   +  NG + LEL      D++I+D+ +  +
Sbjct: 1   MKKESILIIEDDPDIREGVRILLEGEDYTVTEAENGRKGLELLNAET-DLVILDVMMPGM 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG+   ++I++   +  +PV+ +TA + +  +      G + Y+ KP S S  +  +K  
Sbjct: 60  SGIRTCEEIRK---VSNVPVLFLTAKSQESGKLIGLMAGGDDYLPKPFSYSELLGRVKAL 116

Query: 120 IGE 122
           +  
Sbjct: 117 LRR 119


>gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D+       +D +E SGY  +  +NG EAL L   + P +++ DI++   +G E+
Sbjct: 5   ILIADDDPGIRLAVKDFLELSGYSVVTAKNGQEALSLLETYHPHLLVSDIKMPRTNGYEL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             Q+++  E + +PV+ +T  +   +  R  + GC+ Y+ KP  +      I+  +  +
Sbjct: 65  VAQVRQRPEFRLLPVVFLTEKSTTSERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERS 123


>gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 241

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L    +E + +     R+  EA +        ++++D+ L   SGLE
Sbjct: 8   HLLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLMLPGESGLE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +P+I +TA + + D     + G + Y++KP +    +  I+  +  
Sbjct: 68  VARWLRSQD---NVPIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRR 123


>gi|53804897|ref|YP_113275.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53758658|gb|AAU92949.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 243

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D+     L    +   G  A+   +G    +   +   D++++D+ L    GL 
Sbjct: 7   RILIVDDDVEIRNLLGGYLSRFGMEAVGVHDGAAMKKALTESSFDLVVLDLMLPGEDGLT 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++ +S   +IPVI +TA     D     + G + Y++KP      +  I+  +  A
Sbjct: 67  LCRSLRGES---DIPVIMLTARGDPMDRVVGLELGADDYVAKPFEPRELVARIQSILRRA 123


>gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 242

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     +L  D ++ + Y      NG + +E  RQH P +I++D+ L    
Sbjct: 9   MASPILIVEDEPKLGQLLVDYLQAADYATQWLPNGNDVVEWVRQHSPSLILLDLMLPGCD 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I++      +P+I VTA   + D     + G + YI KP S    +  ++  +
Sbjct: 69  GLTLCRTIRQ---FSNVPIIMVTARIEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IVED+E   +L RD ++ +GY A    +G +A + A       +I+D+ L   +G
Sbjct: 1   MKKILIVEDDENIAELERDYLKLNGYRADIEPDGQKACQKALGGGYAALIIDLMLPGKNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I + ++     QE+P+I V+A A   D+ R    G + Y++KP S +  +  ++ +I 
Sbjct: 61  FDIIRDVRS---TQEVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|257877070|ref|ZP_05656723.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC20]
 gi|257811236|gb|EEV40056.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC20]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ VED     +    L++   Y      +G   L+ A     D++++DI L +I G+ 
Sbjct: 2   RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K +++ +     P+I +TA +   D+      G + Y++KP  +   +  I+     
Sbjct: 62  LLKTLRKQNI--RTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRR 118


>gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
 gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
          Length = 224

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED E   +     ++  GY      +G + LE A +   D+I++D+ L  ++G
Sbjct: 1   MHHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++     +  P+I +TA     D       G + Y+ KP ++   +  I+    
Sbjct: 61  IEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator
           [Shewanella loihica PV-4]
 gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella loihica PV-4]
          Length = 238

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED        +  +E +GY     RNG++    A     D+II+D+ L +++G +
Sbjct: 15  RILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPDMNGWQ 74

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+ ++   +IPV+ +TA     D+    + G + Y+ KP + +  +  +K  +  
Sbjct: 75  ILEKIRLNN--SDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRR 131


>gi|300868652|ref|ZP_07113264.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333346|emb|CBN58456.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 484

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 1   MLK-K--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M+  K  +++V+D   N++L   ++   GY     R+G +AL +A+    D+I++DI + 
Sbjct: 6   MMPEKADILVVDDIPENLRLLAGILADRGYRIRPARDGFQALSIAQNIPIDLILLDIMMP 65

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            ISG E+ +++K D   ++IPVI ++A     D+ +    G   YI+KP      +  ++
Sbjct: 66  GISGYEVCQKLKADEVTRDIPVIFISAINEVLDKVKAFAVGGVDYITKPFQAEEVLARVE 125

Query: 118 K 118
            
Sbjct: 126 T 126


>gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 240

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     +   G+  ++  +G EALE    ++ D++I+D+ +  + G
Sbjct: 10  MQTILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGNQVDLLIVDVMMPGLDG 69

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +++E+S    IP+I ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 70  IRTTLKVRENS---SIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLR 126

Query: 122 E 122
            
Sbjct: 127 R 127


>gi|224372441|ref|YP_002606813.1| DNA-binding response regulator [Nautilia profundicola AmH]
 gi|223589062|gb|ACM92798.1| DNA-binding response regulator [Nautilia profundicola AmH]
          Length = 219

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED+    +  ++ +E +G+ ++   +G  AL  A +   D+I++D++L  ++
Sbjct: 1   MKRKILIVEDDVSLNETVKEFLELNGFESVSVYDGDSALSRAYEESFDIILLDVKLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ K+I++     + P+I +T+   + D E+    G + YI KP SL      I   +
Sbjct: 61  GFDVAKEIRK---FSDTPIIFITSLDSEKDIEKGFLSGGDDYIRKPFSLKELKLRIDAIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 966

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED+ +N ++    ++  GY+A    +G   L+       D+I+MD Q+  + G E
Sbjct: 713 KILLAEDDLVNQEVVLTQLQQLGYVADAVSDGEAVLQHLETQHYDLILMDCQMPILDGYE 772

Query: 64  ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T +I+     Q  P +IA+TA  M  D +R  + G + YI+KPI L   +  I +++
Sbjct: 773 TTARIRGSQNSQRPPIIIALTASVMPSDRDRCLQVGMDDYITKPIDLQALVNVINRWV 830



 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEIS 60
           ++VE++ L       + +  G           AL+            ++I+MD++L +  
Sbjct: 545 LVVENSSLVRHSVSCITQPWGIQVETADTSKIALDKWHHQQAKGSPYNLILMDLELLDRH 604

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  Q+ + S      +I +++ + +   E++   G   Y+ KPI+    + +  K +
Sbjct: 605 GAKLLGQLYKTSSDSPTQLILMSSISQRNRAEQVLNLGDFVYLVKPIAPLRLLRSFAKAL 664


>gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 895

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D    M+  R  +    Y   + R+G EALE+A + +  +I++D  + ++ G+E 
Sbjct: 511 ILIADDEPEMMRFLRSQLSGR-YRVDEARDGAEALEIASKRRHHLILLDFMMPQVDGIEA 569

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T++++E    + +P+I +TA A +  + +    G   +++KP S +  +   +  
Sbjct: 570 TRRLREMPSHRGVPIIILTARADEEVKFQALDAGATDFLTKPFSSTELLARCRNL 624


>gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591]
 gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
 gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|167759600|ref|ZP_02431727.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
 gi|167662726|gb|EDS06856.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
          Length = 233

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D++  ++     +   GY  L+  +G EAL++  + K D++++D+ + ++ G
Sbjct: 3   MSKILVCDDDKEIVEAIDIYLSQEGYEVLKAYDGEEALKVLGKEKIDLLVIDVMMPKLDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E +    +P+I ++A +   D+      G + Y++KP +    +  +K  + 
Sbjct: 63  IRATLKIREAN---NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|297584935|ref|YP_003700715.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143392|gb|ADI00150.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M +++++V+D      L ++ ++  GY   +   N  EA +     +PD+II+DI L + 
Sbjct: 1   MNERILVVDDEMDLRVLLKEALKQEGYTEVVTAANLSEAWDQFILIEPDLIILDIMLPDG 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +GL+   +I+  S    +P++ ++A + + D+      G + Y++KP S    +  +K  
Sbjct: 61  NGLDFCAKIRGHS---TVPILFLSAKSDEVDKLLALSLGGDDYVTKPFSPKEVVYRVKSQ 117

Query: 120 IGEA 123
           +  A
Sbjct: 118 LRRA 121


>gi|16329397|ref|NP_440125.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1651878|dbj|BAA16805.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 452

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 66/113 (58%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L  DL+   GY      +G  AL   +  +PD+I++DI++ ++ G ++
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            + IK++ ELQ+IP+I ++A     D+ +  + G   YI+KP  +   +  I+
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123


>gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +     +  +GY+  +  +G E   L      D +++DI L ++ G+ 
Sbjct: 2   RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +  + +   + +PV+ +TA     D+ +    G + Y++KP  L   +  I+  +  +
Sbjct: 62  VLEAWRRNG--RAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRS 119


>gi|227537308|ref|ZP_03967357.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242811|gb|EEI92826.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 234

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED +   +L    +E  GY  +   +G++ALE+ R    D++I+DI L +++G
Sbjct: 1   MNEILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ K I+ DS   ++PV+ +TA     +       G + Y+SKP  L      I+  + 
Sbjct: 61  LDVCKAIR-DSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20]
 gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K+++V+D+    +L    ++  GY  +   +G EA+     + PD  ++I+D+ +  ++G
Sbjct: 2   KILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTN-PDIGLMILDVMMPNMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K +++DS    +P++ ++A +   D+ +    G + Y++KP +    M  ++  + 
Sbjct: 61  LEVVKIVRKDSR---VPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 242

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D E    L    +   G+      +G  AL  A    PD++++D+ L +I G  
Sbjct: 19  RVLVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVMLPDIDGFA 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   +   +P + +TA     D+      G + Y++KP ++S  +  ++  +  A
Sbjct: 79  VCERLRRSGQG--VPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRA 136


>gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71]
 gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227]
          Length = 253

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 2   KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 62  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117


>gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101]
          Length = 240

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQE 58
           M  ++++VED     +    L+E  G++     +G+ A  L      + D+ ++D  L +
Sbjct: 1   MPLRILLVEDEPDLAEALVALLEQQGHVVDHCSDGLSAWTLLSGDLARYDLALVDWMLPQ 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +SG+E+ ++++       +PV+ +TA     D       G + Y+SKP ++   +  ++ 
Sbjct: 61  LSGVELCRRLRAAGFT--VPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRA 118

Query: 119 YIGE 122
               
Sbjct: 119 LQRR 122


>gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 241

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+E   +L    ++  G I    R G E L  A +H  DV+++D+ L    GLE+
Sbjct: 15  VLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGLEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++  S   ++P+I VTA   + D     + G + Y+ KP S    +  I+  +  A
Sbjct: 75  CRELRTRS---DVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRA 130


>gi|284053978|ref|ZP_06384188.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 466

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED+ +N ++    ++  GY A    +G   L+       D+I+MD Q+  + G E
Sbjct: 213 KILLAEDDLVNQEVVLTQLQQLGYTADAVCDGEAVLQHLETQHYDLILMDCQMPILDGYE 272

Query: 64  ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T +I+     Q  P +IA+TA  M  D +R  + G + YI+KPI L   +  I +++
Sbjct: 273 TTARIRRRQNSQRPPIIIALTASVMPSDRDRCIEAGMDDYITKPIDLQALVNLINRWV 330



 Score = 67.8 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
           K+++V+ + L  +    + +  G           AL+             +I+MD++L +
Sbjct: 43  KLLVVDKSSLVRQSVSCITQPWGIQVDAAETAKIALDKWHHQQAEGSPYHLILMDLELLD 102

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
             G ++  Q+ + S   +  +I ++  + +   E++   G   Y+ KPI+    +
Sbjct: 103 RDGAKLLGQLYKTSSDSQTRLILMSGISQRNRAEQVLNLGNFVYLVKPIAPLRLL 157


>gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 242

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D++    L  +++ ++G  A    +G +AL++  +   D++++DI +  + G E
Sbjct: 12  KILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLIDIMMPGMDGFE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   +++   + + P++ +TA   + D       G + YI KP      +  I+  + 
Sbjct: 72  LCANLRQ---VTDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVARIRARLR 126


>gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K++IV+D+    +L    ++  GY  +   +G EAL   R + PD  +II+DI + E+SG
Sbjct: 2   KILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTN-PDIGLIILDIMMPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K++++D+    +P++ ++A +   D+ +    G + Y++KP +    M  ++  + 
Sbjct: 61  TEVLKEVRKDNP---VPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3]
 gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG  ALE+   +   + I+DI + ++ G+E+
Sbjct: 21  ILIVDDDQDIIRFVKANLMQEGFKVFSAHNGERALEIINNNSIKLAILDIMMPQMDGIEL 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A     D+      G + YI KP S   F+  +K  +  
Sbjct: 81  CRRIREK---HSLPIMFLSAKTSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 135


>gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 267

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED+    +     +   GY       G  AL+       D++I+D+ L ++ G
Sbjct: 43  MTKVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMDG 100

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + I+       IP++ +TA   + D       G + Y++KP  L   +  ++  + 
Sbjct: 101 LDVARTIRAQGIT--IPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLR 158

Query: 122 EA 123
            A
Sbjct: 159 RA 160


>gi|157150116|ref|YP_001450468.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074910|gb|ABV09593.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 232

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + + +  +  +GY  L   +G+E LEL ++   D+II DI +  + 
Sbjct: 1   MEKTILLVDDEVDILDIQKRYLLQAGYQVLVAHDGLEGLELFKKKSVDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++       + P +  TA   + D       G + +I+KP S    +  +   +
Sbjct: 61  GYDFISEV--QYLAPDQPFLFTTAKTSEQDRIYGLSLGADDFIAKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1450

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
              V++VEDNELN +L  +L+ ++G       NG EAL+    + + D ++MD Q+  + G
Sbjct: 1099 AHVLLVEDNELNQELALELLVSNGLSVEIAANGQEALDRLAGESRFDGVLMDCQMPVMDG 1158

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               T+ I+   EL  +PVIA+TA  M GD E+    G   +I KPI++     T+ K+I 
Sbjct: 1159 YTATRAIRRRPELAGLPVIAMTANVMSGDREKALAAGMNDHIGKPINVRDMFTTMAKWIR 1218

Query: 122  EA 123
             A
Sbjct: 1219 PA 1220



 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQEI 59
            +V++V+DN     +   +++  G+ A    +G EA+   R    Q   D++++D ++  +
Sbjct: 951  RVLVVDDNASARAILTHMLQQLGFGAEAVSSGAEAIARLRAVETQAPFDLMLLDWKMPGL 1010

Query: 60   SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G++  + ++ ++ + ++P +I +TA+  +G  +     G   +++KP++ S  + T+  
Sbjct: 1011 DGVQTIRALRAEAAVSQVPALIMITAYGREGVRQASADLGVAGFLTKPVAPSALLNTLMH 1070

Query: 119  YIG 121
             IG
Sbjct: 1071 AIG 1073


>gi|296122427|ref|YP_003630205.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014767|gb|ADG68006.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 151

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 65/118 (55%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I +DN  N +L    + +  Y      +G + LE  R+ +PD++++DI + ++SG E
Sbjct: 6   RILIADDNLQNCELLDAYLASDEYEIAMAYDGQQTLEKVREWQPDLVLLDIMMPKLSGFE 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  +++ +   + +PV+ VTA    GD E+  + G + +++KPI+       +K  + 
Sbjct: 66  VCAKLRSEPSTKSLPVLMVTALNEMGDIEKAIQAGADDFLTKPINRLELTTRVKSLLR 123


>gi|228996926|ref|ZP_04156559.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229004602|ref|ZP_04162340.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228756643|gb|EEM05950.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228762805|gb|EEM11719.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 250

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           ++   +++V+D +  + +    ++   +       NG E L L + H  D+I++D+ L +
Sbjct: 12  MRTENILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPD 71

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G E+ +QI+        P++ VTA +   D+      G + YI+KP +       I  
Sbjct: 72  IDGFELCRQIR---NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINV 128

Query: 119 YIGE 122
            +  
Sbjct: 129 QLRR 132


>gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E   +     ++  GY      +G + L+ A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEENLARFVELELKHDGYETDVELDGRQGLDAALNQDFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E   +++ P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  LEVARRVRE---VKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|148283363|gb|ABQ57263.1| AdeR [Acinetobacter baumannii]
          Length = 226

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 14  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 74  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 128


>gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 224

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +    L+    Y+  +   G E L LA Q   D++++DI L EISGLE
Sbjct: 2   RILVVEDDHALREAVVALLTEENYLVDEAATGDEGLYLAEQGIHDLLVLDIMLPEISGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I K+++       +P++ +TA     D     + G + Y++KP ++   +  IK  +  +
Sbjct: 62  IIKRVRATGHT--MPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRRS 119


>gi|119509383|ref|ZP_01628532.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119465997|gb|EAW46885.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 277

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ED+ +   L+   ++  G+  +   NG+  ++ A++H PD+++ DI + +I G 
Sbjct: 7   KKILVIEDDTVTRNLYVKGLQAKGFDTISAENGLAGIQQAQEHLPDLVVCDITMPDIDGY 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +   +++D     IP I +T    +G   +  + G + Y++KP +L   +  I   +  
Sbjct: 67  SVLTMLRQDPVTAIIPFIFITGSCTRGCVRKGMELGADDYVTKPFTLDELLRAISTQLQR 126


>gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus
            degradans 2-40]
 gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
            2-40]
          Length = 1653

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 7/125 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQE 58
             ++++V+DN +N  + + ++E  G I     NG+EA+        +    +I+MD Q+ E
Sbjct: 1397 ARILLVDDNTVNQDVAKMMLEDFGLIIDVANNGLEAIAALDACSIREPYSLILMDCQMPE 1456

Query: 59   ISGLEITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            + G E TK+I++   D +  +IP+IA+TA AMKGD+E+    G + Y+SKPI        
Sbjct: 1457 LDGYETTKRIRKGATDFDNTKIPIIAMTANAMKGDKEKCIAAGMDDYLSKPIEADALEHM 1516

Query: 116  IKKYI 120
            +K ++
Sbjct: 1517 LKLWL 1521



 Score = 39.3 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K + I E N  N  +  ++I +     +   +  ++         DV  +D +L  ++ +
Sbjct: 1252 KTIFIAESNPKNTAILENMISSK--RCIAVSSLPDSNLNLPNEPIDVAFIDRKL--LTSM 1307

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110
            E    +K          + +TA     D E     G + Y++KPI+ S
Sbjct: 1308 ESITPLKNKPNFANTQWLMLTAINQTKDIENYTAKGFDTYLTKPITQS 1355


>gi|323487478|ref|ZP_08092772.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
 gi|323399160|gb|EGA91564.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
          Length = 801

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59
           K+V++VEDNE+N ++   L+E +G       NG E +    +      D I+MDI++  +
Sbjct: 677 KRVLLVEDNEINREIAVMLLEQTGIRCETAVNGAEGVSSFEKTVPGWYDAILMDIRMPVL 736

Query: 60  SGLEITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           +G+E  K+I+E      + IP+IA+TA A   + E   + G   Y++KPI   +    ++
Sbjct: 737 NGIESAKKIREMERRDAKTIPIIAMTANAFSEEREEALEAGINDYLTKPIDAEVMYACLR 796

Query: 118 KYIGE 122
            Y+  
Sbjct: 797 NYMRR 801


>gi|297537876|ref|YP_003673645.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylotenera sp. 301]
 gi|297257223|gb|ADI29068.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylotenera sp. 301]
          Length = 331

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D   N+K+ + +++   Y     +NG++ALELA +  PD+I++D+ + E++G E
Sbjct: 10  KLLIVDDEPTNLKVLKQVLQQD-YRLSFAKNGVDALELAARELPDLILLDVMMPEMTGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +Q+K     Q IPVI VTA   + DE +  + G   YI+KPI+  I    ++ ++
Sbjct: 69  VCQQLKSQLNTQHIPVIFVTALKDEVDETKGFECGAVDYITKPITPVIVKARVRTHL 125


>gi|259417672|ref|ZP_05741591.1| response regulator receiver modulated serine phosphatase
           [Silicibacter sp. TrichCH4B]
 gi|259346578|gb|EEW58392.1| response regulator receiver modulated serine phosphatase
           [Silicibacter sp. TrichCH4B]
          Length = 423

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D+ L  ++    ++  G+  ++   G EA+++ R   PD+I+ D  +  ++G+
Sbjct: 19  RRVLVVDDSRLQRRILVASLKKWGFDVVEAEGGEEAMDICRADPPDLILSDWMMPGMNGI 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119
           +  +  + +S       I +T+ + K +       G + +++KP+S       I   ++ 
Sbjct: 79  DFCRAFRAESHEAYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 138

Query: 120 IG 121
           + 
Sbjct: 139 LR 140


>gi|257486804|ref|ZP_05640845.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330988679|gb|EGH86782.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010275|gb|EGH90331.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++V+D+    ++    +    +    T +  E    A   + D++++DI +  +SG
Sbjct: 1   MTRVLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGENEALSGRHDIVVLDIMMPRMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++I+  S+   +PVI +TA     D     + G + Y+ KP S    +  ++  + 
Sbjct: 61  IEVLRRIRAQSQ---VPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|42780166|ref|NP_977413.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
 gi|42736084|gb|AAS40021.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
          Length = 896

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ +E      +  +NG+E L++ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLDILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|16330974|ref|NP_441702.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653468|dbj|BAA18382.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 368

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED     +   D++    Y  +   +G   L LA+QH PD+I+ D+ +  ++G
Sbjct: 1   MPKILIIEDQLEVRQNIEDILSLEDYEVISAPDGETGLALAKQHLPDLILCDVMMPRVTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   +++D  L  IP I +TA A      +  + G + Y++KP ++   +  I   + 
Sbjct: 61  FEVLMSLRQDPNLAVIPFILLTAKADHHAFRQGMELGADDYLTKPFTIDELLHAITTRLD 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++V+D    +++    +   G+   L  R G E + LAR+ +PD++++D+ L ++ G E+
Sbjct: 5   LLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLAREGRPDLVLLDVMLPDLEGFEV 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++       +P++ +TA +   D+      G + YI+KP +    +  +K  +  
Sbjct: 65  CRRLRS---FTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRR 119


>gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 230

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I++D +  + L +D +E  G+  L   NG + + LA++  P++I++DI + E+ G
Sbjct: 1   MSKILIIDDEKELVTLLQDELEARGHQVLAAYNGADGVSLAKKQ-PELIVLDIMMPEMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++I+++      P++ ++A   + D+ R    G + YISKP  L   +  I   + 
Sbjct: 60  FEVCRKIRDELL---CPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+++ED E   +     ++  GY      NG   L+ A  +  D+I++D+ L E+SG
Sbjct: 1   MSSVLVIEDEENLARFVELELQHEGYETHVEDNGRSGLDAALANDFDLILLDLMLPELSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++E+   +  P+I +TA     D       G + Y+ KP ++   +  ++  + 
Sbjct: 61  LEVARRLREE---KNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 244

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED +    +    +  + +      +G  ALEL RQ  P+V+++D+ +    GLE
Sbjct: 19  KVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGPDGLE 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++        V+ +TA A + D+      G + Y++KP S    +  +   +  
Sbjct: 79  VCRRLRQ---FSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRR 134


>gi|110832965|ref|YP_691824.1| two-component hybrid chemotactic sensor and regulator [Alcanivorax
            borkumensis SK2]
 gi|110646076|emb|CAL15552.1| two-component hybrid chemotactic sensor and regulator, putative
            [Alcanivorax borkumensis SK2]
          Length = 2336

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 67/118 (56%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            VM+ +D+    K+   L+E +GY  +  ++GM+A+      +PDV+++DI++  + G E+
Sbjct: 2212 VMVTDDSVTVRKVTTRLLERNGYEVVTAKDGMDAIAKLEDIRPDVMLLDIEMPRMDGFEV 2271

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
               ++ DS LQ +P+I +T+   +   ER    G   YI KP   S  + TI++ +GE
Sbjct: 2272 ASHVRHDSRLQNVPIIMITSRTGEKHRERAFDIGVNCYIGKPFQESELLSTIRELLGE 2329


>gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str.
           'morsitans']
 gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1]
 gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
 gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|320008190|gb|ADW03040.1| GAF sensor hybrid histidine kinase [Streptomyces flavogriseus ATCC
            33331]
          Length = 1810

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    +++MDI + E+ G 
Sbjct: 1690 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTIVLMDIMMPEMDGY 1749

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              T  I+   +   +P++A+TA AMKGD E+    G   Y++KP+     +  ++ ++ 
Sbjct: 1750 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDSDHLLSVMENWMR 1808


>gi|299142597|ref|ZP_07035728.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
 gi|298576032|gb|EFI47907.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
          Length = 1340

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN        D+   + +   Q  +G E L++A    PD+II D+ +  + G E+ 
Sbjct: 1080 LVVEDNPDIRTYIADVF-ANDFDVRQAADGQEGLQMALDIIPDMIISDVMMPNMDGNELC 1138

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++KE+     +P+I +TA      +E   + G ++Y++KP S S+    +   + +
Sbjct: 1139 RKVKENVRTSHVPIILLTAKDGNEAKEEGYESGADSYLTKPFSSSLLRTRVHNLVEQ 1195


>gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60]
          Length = 242

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L  +L    +   GY      +G   + L  Q   D +I+D+ L  + GL
Sbjct: 9   KRILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLMLPGVDGL 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I ++++     +  P+I  +A + +       + G + Y++KP S+   +  +K     
Sbjct: 69  DICRRVRAM--TRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRR 126


>gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
 gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 242

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     +L  D ++ + Y      NG + +E  R H P +I++D+ L    
Sbjct: 9   MASPILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVEWVRLHSPSLILLDLMLPGCD 68

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + + I++      +P+I VTA + + D     + G + YI KP S    +  ++  +
Sbjct: 69  GLTLCRTIRQ---FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125

Query: 121 GE 122
             
Sbjct: 126 RR 127


>gi|261854762|ref|YP_003262045.1| response regulator receiver protein [Halothiobacillus neapolitanus
           c2]
 gi|261835231|gb|ACX94998.1| response regulator receiver protein [Halothiobacillus neapolitanus
           c2]
          Length = 123

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 72/121 (59%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VEDNE+N  +    +   GY  L   +G E + +A+  +PD+I+MD+ L  + G
Sbjct: 1   MARILLVEDNEMNRDMLSRRLARKGYEVLLAVDGGEGVAMAKSQQPDLILMDMSLPVLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+ I+ +   + IP+IA+TA AM G+  +  + GC  + +KP+ L   +E I++ + 
Sbjct: 61  WEATRAIRAEPATEAIPIIALTAHAMDGERAKALEAGCNDFDTKPVDLPRLLEKIEQQMA 120

Query: 122 E 122
           +
Sbjct: 121 K 121


>gi|220905438|ref|YP_002480750.1| Hpt sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869737|gb|ACL50072.1| Hpt sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 1007

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 4/120 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKP-DVIIMDIQLQEISG 61
           V++VEDNE+N ++ R+L+E +G   L   NG EAL+L     H P  +++MD+Q+  + G
Sbjct: 636 VLVVEDNEINAQIARELLEQAGLEVLLAANGQEALDLLDNPVHPPLGLVLMDVQMPVMDG 695

Query: 62  LEITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE T++I+       ++PV+A+TA          +  G   Y++KP++      T++K++
Sbjct: 696 LEATRRIRAMGISPVDLPVVAMTAHTDMASRMDGKDVGMNDYLTKPVNPETLYATLEKWL 755


>gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 226

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +    + +  +   GY      +G EAL     ++ DVII+D+ L +I G+E
Sbjct: 2   KLLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEYDVIILDLNLPKIDGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + KQI++     EI ++ ++A     D       G   Y+ KP         I+  I  
Sbjct: 62  VLKQIRQKD--SEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLIRR 118


>gi|197116920|ref|YP_002137347.1| response receiver [Geobacter bemidjiensis Bem]
 gi|197086280|gb|ACH37551.1| response receiver [Geobacter bemidjiensis Bem]
          Length = 125

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED+    ++   L+   G+      NG +A+E       D I MD+Q+  + G  
Sbjct: 2   RILVAEDDPTIRQMMATLLSRCGFDCRSVDNGRKAVEAWEDETFDFIFMDVQMPVMDGFA 61

Query: 64  ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T+ I+E   L+    P+IA+TA AM+ D ++    G + Y+SKPI L      +K 
Sbjct: 62  ATRMIREKEALKGGHTPIIALTAHAMEQDRQQCLDSGMDDYLSKPIDLDELFSLLKN 118


>gi|27461219|gb|AAM09851.1| response regulator [Enterococcus faecium]
 gi|109240379|dbj|BAE96113.1| response regulator [Enterococcus raffinosus]
          Length = 232

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++  GY   +  NG +AL      + D+ I+DI L +I 
Sbjct: 1   MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGRDALNCIESVELDLAILDIMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E       PVI +TA    GD+        + YI+KP +    +  +K  +
Sbjct: 61  GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQL 116

Query: 121 GE 122
            +
Sbjct: 117 RQ 118


>gi|326801872|ref|YP_004319691.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
 gi|326552636|gb|ADZ81021.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
          Length = 528

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+  +D+    +    L++T  Y     +NG+ ALELA+  +PD+I+ DI +  + G++
Sbjct: 42  HVLFADDDANMREYVSCLLKTQ-YRVTVVQNGIMALELAKTTQPDLILSDIIMPGMDGIQ 100

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + +++D   Q+IP+I ++  A +  +      G + Y+ KP +    +  IK +I
Sbjct: 101 LLQALRQDPRTQDIPLILLSIRASQASKIDSFDAGADDYLVKPFTPPELLARIKAHI 157


>gi|319902736|ref|YP_004162464.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
 gi|319417767|gb|ADV44878.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++      D++++DI + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVETANSAEEALKM-DIGNYDLLLLDIMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  ++P+I +TA   + D       G + YISKP SL      +K  +  
Sbjct: 64  MASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122


>gi|304383610|ref|ZP_07366069.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           marshii DSM 16973]
 gi|304335134|gb|EFM01405.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           marshii DSM 16973]
          Length = 901

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN          +    Y  L   +G E L+ A++  PD+II D+ +    GLE
Sbjct: 647 RILVIEDNADVAAYIGSRLADR-YAILYAPDGNEGLKKAKELVPDLIITDLMMPHTDGLE 705

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q+++D  +  +P+I VTA   + D     + G +AY++KP +       ++K + +
Sbjct: 706 VCRQVRDDEIINHVPIIVVTAKITEADRVAGLQAGADAYLAKPFNSDELRTRVEKLLEQ 764


>gi|301164100|emb|CBW23656.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis 638R]
          Length = 1330

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +  + Y      NG EAL + +++ P++II DI + E+ G 
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK D E   IP+I +TA   + +     K G + YI KP ++ I   TI   +  
Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLTN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  A+   R+ +PD +++DI L ++ GL 
Sbjct: 23  RVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGLA 82

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   E  ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 83  VLGRLRR--EAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 140


>gi|253565107|ref|ZP_04842563.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
 gi|251946572|gb|EES86949.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
          Length = 1330

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +  + Y      NG EAL + +++ P++II DI + E+ G 
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK D E   IP+I +TA   + +     K G + YI KP ++ I   TI   +  
Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLTN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|226308004|ref|YP_002767964.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226187121|dbj|BAH35225.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D     +     +   GY      +G  A+    Q   D++++D+ +    GL
Sbjct: 4   RRVLVVDDEVSICESIAARLRAEGYDVELAFDGPSAVTRCEQMDADLVVLDVMMPGFDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+    ++ +PV+ +TA A + D       G + Y+SKP S+ + +  ++  +  
Sbjct: 64  EVCRRIQA---VRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRR 120

Query: 123 A 123
           A
Sbjct: 121 A 121


>gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 307

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +    D +E SG+  L   +G  AL +  +  PD+I++D  +  + G E 
Sbjct: 11  VLLVDDSPEALGFLTDALEQSGFSVLIATSGSAALNIVERITPDLILLDAVMPSMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K +  + +IPVI +T            + G   Y+SKPI++      I+ ++  A
Sbjct: 71  CRRLKANVGVAQIPVIFMTGLTETEHVVHALESGGVDYLSKPINVDELRARIRVHLRNA 129


>gi|209809112|ref|YP_002264650.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010674|emb|CAQ81061.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 755

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++VEDN  N  + ++ +  +GY      NG EA+ +      D+I MDI + E+ G
Sbjct: 493 SARLLVVEDNLANQIVIKNTLSYAGYTIDIANNGKEAISMVTDTDYDLIFMDISMPEMDG 552

Query: 62  LEITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  TK+I+  S+  E +P+IA+TA A+ GD+ER    G   Y+SKP + +  +E +  Y+
Sbjct: 553 MTATKKIRTLSKHHEKMPIIALTAHALSGDKERFIDAGMTDYLSKPFNRTALLECLATYL 612


>gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
 gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
          Length = 231

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D++  ++     +   GY  L+  +G EAL+L  +HK D++I+D+ +  + G
Sbjct: 1   MYNILVCDDDKEIVEAIEIYLSQEGYKVLKAYDGEEALKLLDKHKVDLLIIDVMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E    Q +P+I ++A +   D+      G + Y++KP +       +K  + 
Sbjct: 61  IRATLKIREK---QNMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|53714602|ref|YP_100594.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
 gi|60682624|ref|YP_212768.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis NCTC 9343]
 gi|52217467|dbj|BAD50060.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
 gi|60494058|emb|CAH08850.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis NCTC 9343]
          Length = 1330

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +  + Y      NG EAL + +++ P++II DI + E+ G 
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK D E   IP+I +TA   + +     K G + YI KP ++ I   TI   +  
Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLTN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|27364655|ref|NP_760183.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37681297|ref|NP_935906.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|320155050|ref|YP_004187429.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
 gi|27360800|gb|AAO09710.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37200048|dbj|BAC95877.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|319930362|gb|ADV85226.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
          Length = 227

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L  +++   G+   +  +G + L+       D+I++D+ + +++G
Sbjct: 1   MANILLIDDDTELTSLLTEVLSYEGFNVTEANDGEQGLQALSAE-IDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K+++E     + PV+ +TA   + D     + G + Y+ KP S    +  IK  + 
Sbjct: 60  IDTLKKLREQW---DTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIKAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143]
 gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143]
          Length = 269

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 18  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 78  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 133


>gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
 gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
          Length = 1121

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N K+   L+   GY A    NG+EALE  R+   DV++MD+Q+ E+ GLE
Sbjct: 883 KILLAEDNAVNQKVALRLLARLGYRADVVANGLEALEAVRRQSYDVVLMDVQMPEMDGLE 942

Query: 64  ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +++IK     +  P +IA+TA AM+GD E+    G + Y++KPI +   ++ + +
Sbjct: 943 ASRRIKLGEAGRAAPRIIALTADAMQGDREKCLAAGMDDYLTKPIKVEALVDALTR 998



 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 15/120 (12%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
           K+++ V+DN+ N ++     ++ G +   +R+  EAL   ++  P D+ I+D+Q+ +++G
Sbjct: 740 KRLLAVDDNDTNRRILVLQSQSWGMLVRDSRSPQEALGWIKRGDPFDLAILDMQMPDMNG 799

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA-----YISKPISLSIFMETI 116
           L + ++I+       +P++  ++          R+ G +A      ++KPI  S   + +
Sbjct: 800 LMLGREIRAH--RPNLPLVLYSSLG-------CREVGPDAALFAFQLTKPIKPSQLYDAL 850


>gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205]
          Length = 234

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED++   +   + +E  G+      NG  A +  ++   ++I++D+ L  I+GL
Sbjct: 11  ARLLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDPFELIVLDVMLPGINGL 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ +++ E  +     V+ V+A   + D     + G + Y+ KP  +   +   +  +  
Sbjct: 71  DLCRKLIELPQRPL--VLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRR 128


>gi|283850337|ref|ZP_06367626.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574363|gb|EFC22334.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 943

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN++N    +  +  +G       +G EAL L  Q   D+++MDIQ+ E+ G E
Sbjct: 695 RVLLAEDNQVNRLFLKHFLVEAGCEVRLAGSGGEALALLAQGPADLVLMDIQMPEMDGTE 754

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I++       + +PV+A+TA++MKGD ER    G + Y+SKP+ +      +++ +
Sbjct: 755 ATRRIRDGEVGEAARRLPVVALTAYSMKGDRERFLSAGLDDYVSKPVDVDELFMVMRRVL 814

Query: 121 GE 122
             
Sbjct: 815 DR 816


>gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 231

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     +   G+  ++  +G EAL+L   ++ D++I+D+ +  + G
Sbjct: 1   MQSILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLENNQVDLMIVDVMMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +++E      IP+I ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 61  IRTTLKVRE---TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQE 58
           M   +++VED E         ++   Y  +   +G +AL+     + + ++II+D  L +
Sbjct: 12  MANTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPK 71

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ ++I+++    +IP++ +TA    GD+      G + YI+KP  +   +  I+ 
Sbjct: 72  LDGLEVLRRIRQND---DIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRV 128

Query: 119 YIGEA 123
            +  +
Sbjct: 129 MLRHS 133


>gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
 gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++VED++   +     +++ GY   Q  +G+E LE+  + +  + I+DI +  + G
Sbjct: 3   MNHVLVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEEIHLAIVDIMMPRMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +T +++E  +    PVI ++A + + D+      G + Y++KP +    +  +   + 
Sbjct: 63  IRMTMKLREKYDF---PVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|189466788|ref|ZP_03015573.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM
            17393]
 gi|189435052|gb|EDV04037.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM
            17393]
          Length = 1339

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN+   +  R+ +    Y      +G +AL++ +++ P++II DI + E+ G E
Sbjct: 1078 KILIVEDNDELREYLRNTLSDD-YTIQVCSDGKQALDIVKEYMPNMIISDIMMPEMRGDE 1136

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +  ++K D E   IP+I +TA     +     K G + YI KP ++ I   TI   +
Sbjct: 1137 LCHKLKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATIANIL 1193


>gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01]
 gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01]
          Length = 1000

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DN +N K+    +  +GY      NG EA+E+  +++  +I+MD  +  + G E
Sbjct: 717 KILVVDDNTVNQKIAGLHVTKAGYEFDLAANGQEAVEMFAKNQYALILMDCMMPVMDGFE 776

Query: 64  ITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            TK+I++          IP+IA+TA  +  D ++    G + Y+ KP   ++  + + K 
Sbjct: 777 ATKRIRQLEKEVNRGYRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAAVLKDKLSKA 836

Query: 120 I 120
           +
Sbjct: 837 V 837



 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            ++++VEDN +N K+   L+  +GY      NG  AL++ +Q +  D+I+MD  +  + G 
Sbjct: 880  RILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDMFQQDNSFDIILMDCMMPVMDGF 939

Query: 63   EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E TK+I+   +   L + P+IA+TA  +  D +R    G +AY+ KP+     +  I+  
Sbjct: 940  EATKEIRAYEKVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESV 999

Query: 120  I 120
            I
Sbjct: 1000 I 1000


>gi|317124213|ref|YP_004098325.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588301|gb|ADU47598.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL---ARQHKPDVIIMDIQLQ 57
           M + V++V+D      + R  +E  G++  +   G EAL     A   +PD+ ++D+ L 
Sbjct: 1   MARHVLVVDDEAQIRTVLRAYLEADGFVVSEAGTGGEALRQMTTANGQRPDLALLDVGLP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ GLE+ ++++  S   ++ VI VTA + + D+      G + YI+KP S    +  +K
Sbjct: 61  DLDGLEVLRRVRAQS---DLFVILVTARSEEVDKLVGLGIGADDYITKPFSPREVVARVK 117

Query: 118 KYIGE 122
             +  
Sbjct: 118 TVLRR 122


>gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 285

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L    +   G+      +G  A++ AR  +PD +++D+ L ++ GL 
Sbjct: 60  RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLS 119

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++ D  L ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 120 VLGRLRRD--LPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 177


>gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 231

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQE 58
           M   +++VED E         ++   Y  +   +G +AL+     + + ++II+D  L +
Sbjct: 1   MANTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ ++I+++    +IP++ +TA    GD+      G + YI+KP  +   +  I+ 
Sbjct: 61  LDGLEVLRRIRQND---DIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRV 117

Query: 119 YIGEA 123
            +  +
Sbjct: 118 MLRHS 122


>gi|119471397|ref|ZP_01613869.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
 gi|119445673|gb|EAW26957.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+I     N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KVLVVDDDMRLRSLLERYLVEQGFIVRTAANSEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     EIP++ +TA   + D     + G + YI KP +    +  IK  +  
Sbjct: 67  ICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123


>gi|186684616|ref|YP_001867812.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nostoc punctiforme PCC 73102]
 gi|186467068|gb|ACC82869.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nostoc punctiforme PCC 73102]
          Length = 406

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED E   +   DL+E   +  +   NG   + LA    PD+I+ D+ + EI G
Sbjct: 1   MPKILIIEDEEAVRENILDLLEAEDFETIAAANGRIGVHLAICEVPDLILCDMMMPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             +   +++D     IP I +TA + K D  +    G + YI+KP S +  +  I
Sbjct: 61  YGVLTALRQDPSTATIPFIFLTAKSAKSDFRQGMDMGADDYITKPFSRAELLSAI 115


>gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 244

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L +  +E   +      +G  ALE+A+  +PD  I+D+ +  + G  
Sbjct: 19  RVLVVDDEANIADLIKARLEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMPGMDGFT 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E  +  E PV+ +TA     D       G + Y++KP +L   +  ++  +  
Sbjct: 79  VLNKLREAGD--EAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRR 135


>gi|257094360|ref|YP_003168001.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046884|gb|ACV36072.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 797

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++VEDNE+N ++   ++E+ G       +G +A+   R     VI+MD Q+  + 
Sbjct: 524 MTGRVLLVEDNEVNREISGAILESLGCAVDFAHDGEQAVSARRSGSYQVILMDCQMPVLD 583

Query: 61  GLEITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           G   T+QI+ +       E+P+IA+TA A+ GD E     G   Y++KPI+ +     + 
Sbjct: 584 GFAATRQIRAEERAAGRAEVPIIALTANALAGDRELCLNAGMNDYLAKPINRAQLTAALA 643

Query: 118 KYI 120
           +Y+
Sbjct: 644 RYL 646


>gi|237724326|ref|ZP_04554807.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229437195|gb|EEO47272.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1360

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++DN   + + +++     Y      +G +A +    H+ D+II D+ L +I+G E
Sbjct: 1110 TLLLIDDNAELLYIMKEIF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1168

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  +IK D     IPV+ +TA     D       G + YI+KP  + +    +   I 
Sbjct: 1169 LCTRIKSDLRFNHIPVVILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1226


>gi|237737806|ref|ZP_04568287.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
 gi|229419686|gb|EEO34733.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
          Length = 234

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+I+ED++   +  +  +E  GY  +   NG   +   +   PD+I++D+ +  +SG 
Sbjct: 5   KKVLIIEDDKNIRRFLQLELEHEGYKVIIGENGEIGINKFKNETPDIILLDLMMPILSGE 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ K I++     EIP+I +TA     ++  +   G + YI+KP  +      ++  + 
Sbjct: 65  EVCKIIRK---TSEIPIIILTAKDQTLNKIELLDMGADDYITKPFEIEELFARMRVALR 120


>gi|224540237|ref|ZP_03680776.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518116|gb|EEF87221.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++      +++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-NIGSYNLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  ++P+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 225

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++++D    +++ +  +E  GY  +Q  +G+EALE   +  PD++I+D+ L +IS
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKQSEFNPDLLILDLMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+ +SE   +P+I +TA + +         G + YI+KP S    +  +   +
Sbjct: 61  GENVCERIRRESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
 gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia
           pseudotuberculosis IP 31758]
 gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10]
 gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua]
 gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516]
 gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F]
 gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola]
 gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII]
 gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+]
 gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92]
 gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10]
 gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua]
 gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92]
 gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola]
 gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004]
 gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038]
 gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|296159566|ref|ZP_06842390.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890274|gb|EFG70068.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 246

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D+ +   L    ++++G+ A    +G        + +P V+++DI +    
Sbjct: 1   MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL     ++   +  +IPVI VTA     D       G + Y++KP      +  I   +
Sbjct: 61  GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|296159560|ref|ZP_06842384.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890268|gb|EFG70062.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 245

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D+ +  +L    ++  G+      +GM      +  +P +I++DI + E+ 
Sbjct: 1   MNPSILVVDDDPVVRELVSGYLQGRGFKVDTLEHGMALQRQLQDERPALIVLDIMMPELD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+   + ++      +IPVI +TA A   D     + G + Y+ KP   S  +  I+  +
Sbjct: 61  GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|289663657|ref|ZP_06485238.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 238

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+IV+D     +     +   GY  LQ     E L L      +++++DI L +  G 
Sbjct: 11  ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLALLAGQGAELVVLDIGLPDRDGH 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++      +PVI +T  A + ++      G   Y++KP  +   M  I+  + +
Sbjct: 71  EVLREIRQ---WSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127

Query: 123 A 123
           A
Sbjct: 128 A 128


>gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
          Length = 232

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED           ++ +G+  ++   G E L++  +   D+ ++D+ L  I G
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTVDIALLDVMLPGIDG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ K I++++  +++ +I +TA     D+ +    G + YI+KP S  +    I+  + 
Sbjct: 64  LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|215483396|ref|YP_002325609.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|213988889|gb|ACJ59188.1| response regulator [Acinetobacter baumannii AB307-0294]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGNIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|70729128|ref|YP_258864.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343427|gb|AAY91033.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 633

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 67/118 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VEDN +N  + + ++ + G+      +G +A+  A     + I+MD +L  + G 
Sbjct: 515 RNVLLVEDNPVNQTVIQAMLRSLGFTVSIVTDGAQAVRSAESLIFEAILMDCRLPLVDGY 574

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T+QI++     ++P+IA+TA A++GD E     G   Y++KP   +   + +++++
Sbjct: 575 EATRQIRQLPGCADLPIIALTANALQGDREACLAAGMNDYLAKPFKRADLQQILQRWV 632


>gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 219

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED    +      ++ +G+    T  G +A+ LA Q   D+II+D+ L +I G
Sbjct: 1   MSSILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q++       +PVI +TA +   D     +GG + Y+ KP S    +  I+  + 
Sbjct: 61  FEVLQQLRGQGVG--VPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118


>gi|261408735|ref|YP_003244976.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285198|gb|ACX67169.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D    ++     +   G+  +    G EAL  AR+ KP ++++D  L E+S
Sbjct: 1   MAHTLLLVDDERKVIEFMEPFLRQEGFHIITASTGTEALAKAREAKPSLVVLDWMLPELS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++ S +    +I VTA   + D+    + G + Y++KP SL      I+  +
Sbjct: 61  GIEVCRELRKSSRVG---IIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
          Length = 236

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED +      +  +   GY   +  NG E LE+  +    + I+DI +  + 
Sbjct: 1   MQHNILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVLNREDIHLAIVDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ +T +++E     +IPVI ++A +   D+      G + Y++KP +    +  +   I
Sbjct: 61  GITMTMRLRE---TYDIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|166033308|ref|ZP_02236137.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC
           27755]
 gi|166027665|gb|EDR46422.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC
           27755]
          Length = 236

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED++   K  + ++E + Y  + T  G EA  L     PDV+I+D+ L ++ G++
Sbjct: 6   RVLIVEDDKNIRKFIQTILEANDYDVIATETGKEAYSLITSRCPDVVILDLGLPDMDGMK 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           I K+++       +P+I V+A   + D+      G + YI+KP   S  +  I+  I 
Sbjct: 66  ILKEVRA---WSNMPIIVVSARDHEKDKVEALDMGADDYITKPFGTSELLARIRAAIR 120


>gi|162295961|gb|ABX83929.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129


>gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894]
 gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894]
          Length = 252

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 19  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 78

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 79  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 135


>gi|138893945|ref|YP_001124398.1| subtilin biosynthesis regulatory protein SpaR [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250503|ref|ZP_03149194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265458|gb|ABO65653.1| Subtilin biosynthesis regulatory protein SpaR [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209993|gb|EDY04761.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 232

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+E      +  +E   Y      +G+EAL++      D+I++DI ++ I G+
Sbjct: 4   KKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMIND-DFDLIVLDIMMEGIDGM 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   I++  +    P++ V+A  ++ D+ +    G + YI+KP SL      I  ++  
Sbjct: 63  ELCTIIRDRVDY---PIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRR 119


>gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
          Length = 223

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED      L  + ++   +      +G E + +A     DV+I+DI L    G E
Sbjct: 2   RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K ++E+      PV+ +TA +      +    G + Y+ KP  L   +  ++  I  
Sbjct: 62  ILKSMRENGV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 118


>gi|319783915|ref|YP_004143391.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169803|gb|ADV13341.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 244

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED+    ++  D +  +G       +G++     R  K D+I++D+ L   +GL 
Sbjct: 13  RILIVEDDLEIARMLGDTLTDNGMTVEIAESGVQMNAALRTQKFDLIVLDVMLPGENGLN 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++       IP++ +TA   + D     + G + Y++KP S       I+  +  
Sbjct: 73  ICRRLRA---ATNIPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRR 128


>gi|312959727|ref|ZP_07774244.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311286444|gb|EFQ65008.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 234

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 65/125 (52%), Gaps = 5/125 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +   +++++D     K  R  + + GY  ++   G E L  A  +KPD++++D+ L +
Sbjct: 4   MSQTATILVIDDEPQIRKFLRISLASQGYKVIEAGTGNEGLAQAALNKPDLLVLDLGLPD 63

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G ++ ++ +E      +PV+ ++  A +G +     GG   Y++KP  +  F+  ++ 
Sbjct: 64  MDGQQVLREFRE---WSTVPVLVLSVRASEGQKVEALDGGANDYVTKPFGIQEFLARVRA 120

Query: 119 YIGEA 123
            + +A
Sbjct: 121 LLRQA 125


>gi|297588589|ref|ZP_06947232.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573962|gb|EFH92683.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +M+V+D +  +K     ++T  Y  L+  NG +ALEL  ++K D+ ++DI ++ + G
Sbjct: 1   MYNIMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGYDALELMEKNKIDLFLVDIMMEGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+T++I+E   +   P+I ++A +   D+      G + YI+KP      +  IK  + 
Sbjct: 61  LELTQKIRE---VSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira
           platensis NIES-39]
          Length = 730

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED+ +N ++    ++  GY A    +G   L+       D+I+MD Q+  + G E
Sbjct: 477 KILLAEDDLVNQEVVLTQLQQLGYTADAVCDGEAVLQHLETQHYDLILMDCQMPILDGYE 536

Query: 64  ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T +I+     Q  P +IA+TA  M  D +R  + G + YI+KPI L   +  I +++
Sbjct: 537 TTARIRRRQNSQRPPIIIALTASVMPSDRDRCIEAGMDDYITKPIDLQALVNLINRWV 594



 Score = 62.8 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
           K+++V  + L  +    + +  G           AL+             +I+MD++L +
Sbjct: 307 KLLVVNKSSLVRQSVSCITQPWGIQVDAAETAKIALDKWHHQQAEGSPYHLILMDLELLD 366

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
             G ++  Q+ + S      +I ++  + +   E++   G   Y+ KPI+    +
Sbjct: 367 RDGAKLLGQLYKTSSDSSTRLILMSGISQRNRAEQVLNLGNFVYLVKPIAPLRLL 421


>gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
 gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
          Length = 725

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 60/117 (51%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED  +N ++ + ++   G   +   NG  A++  +    D+I MD Q+  + G +
Sbjct: 598 RVLVVEDTLVNQRVTQAMLVRLGVDVVVAENGQVAIDYCKHDIFDLIFMDCQMPVMDGYQ 657

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + ++E       P++A+TA A   D E   K G + YI+KP+  +     IK ++
Sbjct: 658 AARLLREHGYAPHTPIVALTANATAQDRENCLKSGMDDYIAKPVRKAELERMIKNHM 714



 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEIS 60
           ++V+D+ LNM++    +   G       +  +A E+  +         ++I+D  +    
Sbjct: 444 LLVDDSRLNMRITSAQLSNLGCQVSCCVHSEDAEEMIAERIDTAKPFKLVILDKLMPNSD 503

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I  ++++    +   ++ +TA     D  ++     E Y+S+P   +     + + +
Sbjct: 504 GFSIASRLRKRFGKRCPSLMMITAAPEVHDNVKLESLNIEGYLSRPYKFNDLRNHLARIL 563

Query: 121 G 121
            
Sbjct: 564 R 564


>gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 234

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    ++L    ++  G+      +G EAL +AR+  PD  IMD+ +  + G E
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVMMPGMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++++    + PV+ +TA             G + Y++KP SL   +  ++  +  
Sbjct: 68  LLGKLRQEGL--DGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124


>gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 645

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 68/119 (57%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++MIV+D   N+ L  D++   G+  +   +G +ALE A +  PD+I++DI++  + G 
Sbjct: 8   ARIMIVDDTPANLNLLMDMLLKKGHQVVAFPSGQQALEAASKTPPDLILLDIRMPGMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ +++K+D +LQ+IPVI ++A     D+ +    G   Y+SKP         ++ ++ 
Sbjct: 68  EVCRKLKQDPDLQDIPVIFISALQDVSDKVQAYNTGGVDYVSKPFQPEEVYARVETHLR 126



 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I ED+ L+   F  +++  G+      +G + +     +  D I+MDI+L  I G E
Sbjct: 522 RILIAEDDSLSRIFFEKILQGEGHRVESVEHGDQVMSRLAMNDYDCILMDIELPGIRGDE 581

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           IT +I+    L   ++IP+ AVTA+   GD E   K G + Y+ KP+ +  F E  KK+
Sbjct: 582 ITTRIRAADNLGAKKDIPIFAVTAYTQPGDREHFLKAGMDDYLPKPLGIQEFREAFKKH 640


>gi|254522018|ref|ZP_05134073.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219719609|gb|EED38134.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VEDN    ++  + +E  G+     ++G++   LA ++  DV+++D+ L  + G+E+
Sbjct: 2   VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D+  +  PV+ +TA     D+      G + Y++KP ++      ++  I  
Sbjct: 62  CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 118


>gi|169830118|ref|YP_001700276.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
 gi|168994606|gb|ACA42146.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
          Length = 916

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           K ++IV+D+  N+   +  +ET G   L  ++G+E LE+ + H   D+++MDI +  + G
Sbjct: 792 KNILIVDDDNRNIYALKTALETRGMNILVAKDGLECLEVLQAHHEIDLVLMDIMMPNMDG 851

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E    I++  +  E+P+IA+TA AMK D ++  + G   YISKP++L   +  ++ ++
Sbjct: 852 YEAMTIIRQQMKRTELPIIALTAKAMKNDRDKSLQAGASDYISKPLNLDQLISVLRVWL 910


>gi|162147183|ref|YP_001601644.1| regulatory protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544237|ref|YP_002276466.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785760|emb|CAP55331.1| putative regulatory protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531914|gb|ACI51851.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 263

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED+     L   +++  GY     ++G E          D+I++D+ L   +GL
Sbjct: 19  ARILVVEDDPGMRTLLVRVLQGDGYRVRGVQDGREMWSALATSPADLIVLDVMLPGTNGL 78

Query: 63  EITKQIKEDS-------ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           ++ + ++             +IPVI V+A   + D     + G + Y++KP      +  
Sbjct: 79  DLCRSLRRGGVPVDGVVPDPQIPVIMVSARGEELDRVVGLELGADDYVAKPFGQKELLAR 138

Query: 116 IKKYIGE 122
           ++  +  
Sbjct: 139 VRAVLRR 145


>gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16]
 gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED           +  SG++    R+G + L  AR+H  D+I++D+ L  + G +
Sbjct: 2   RILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +   ++ PV+ +TA     D  +  + G + Y+ KP + +  +  I+  +  
Sbjct: 62  VLRELRRE---RDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRR 117


>gi|119947312|ref|YP_944992.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119865916|gb|ABM05393.1| sensor histidine kinase with ATPase domain [Psychromonas ingrahamii
            37]
          Length = 1278

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
            +K+++V+D+  N      ++   G   +   NG  AL+ LA +   ++++MDI +  + G
Sbjct: 1158 RKILLVDDDLRNTYALSKVLREYGLEVIMADNGKLALQKLAEEENIELVLMDIMMPVMDG 1217

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E  ++I+  +  +++P+IA+TA AM  D  +  + G   Y  KPI +   +  +K ++ 
Sbjct: 1218 YEAMRKIRSQTRFKKLPIIALTAKAMPEDRTKSIEAGANDYCIKPIDVDKLIAIMKIWLF 1277

Query: 122  E 122
             
Sbjct: 1278 R 1278



 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 16/130 (12%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K V+++ED+   M++  DL    GY  L    G E LELA  ++P  I++D+ L +ISG 
Sbjct: 890  KSVLVIEDDPSFMRILIDLSRHKGYRGLSALTGREGLELAAMYQPSAIVLDLGLPDISGR 949

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSI---------- 111
            ++ +Q+K++   + IPV  ++A     D+   + + G   +++KP+S             
Sbjct: 950  QVLEQLKQNINTRHIPVHILSA----EDKNTEVLQIGAVGFLTKPVSGEDIDSLFCNIEH 1005

Query: 112  -FMETIKKYI 120
               ++IK+ +
Sbjct: 1006 LLQDSIKRVL 1015



 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V++VED+  N      LI            G EA E         +I+D+ L +ISG 
Sbjct: 1012 KRVLLVEDDNNNRLAVTRLIANKNIEICSVSTGREAQEKLLSELFHCVILDLSLPDISGF 1071

Query: 63   EITKQIKEDSELQEIPVIAVTAF--AMKGDEE 92
            E+  +++ +  +   P+I  T    + +  +E
Sbjct: 1072 ELLNRLRHNKSITLPPIIVYTGRELSSEEYKE 1103


>gi|330821522|ref|YP_004350384.1| DNA-binding response regulator ColR [Burkholderia gladioli BSR3]
 gi|327373517|gb|AEA64872.1| DNA-binding response regulator ColR [Burkholderia gladioli BSR3]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED+   +      +   GYI     +G +   LA  H+ D+I++D+ L  + G  
Sbjct: 2   RILVIEDDPDILANISGHLGNRGYIVDCAFDGQQGYVLATAHEFDLIVLDLMLPRLDGYS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E++ L E P+I VTA     D  +    G + Y+ KP +L+     +K  +  +
Sbjct: 62  LCRKLREEARL-ETPLIMVTARDTLDDRLQGFDAGADDYLVKPFALAELAARVKALLHRS 120


>gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 224

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           + IV+D++    L    +E  GY      N    L+   + KPD++I+DI +  + G E+
Sbjct: 5   IYIVDDDKNIRDLMVKYVEKEGYTVKSFENAEAVLDNFEKDKPDMLILDIMMPGMDGYEL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +QI++ S   ++P+I V+A     D+    + G + YI+KP S    +  +K     
Sbjct: 65  CRQIRKKS---DVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRR 119


>gi|229119327|ref|ZP_04248628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228664089|gb|EEL19629.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
          Length = 214

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED++   +L +  + T  Y  +   +G+E ++   +   D+I++D+ +  ++G E+ K 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I+  S    IP+I +TA   + D+ +    G + YI+KP S  + M  ++  +  +
Sbjct: 62  IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114


>gi|224823772|ref|ZP_03696881.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224604227|gb|EEG10401.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++V+D+     +  D +   G+   +  +G   L  A   +  ++++D+ +  ++G
Sbjct: 1   MTHVLLVDDDIELSAMLADYLGQEGFRVSRAADGESGLREALSGRYAIVVLDVMMPRLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +++++ S+   +PV+ +TA     D     + G + Y++KP ++   +  +K  + 
Sbjct: 61  IEVLRRLRQHSQ---VPVLMLTARGDDIDCIMGLELGADDYVTKPCAMRTLVARLKALLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|198274494|ref|ZP_03207026.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135]
 gi|198272696|gb|EDY96965.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135]
          Length = 1398

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+      R ++    Y  L+   G EAL L   +  D II D+ +  + G+E+
Sbjct: 1149 ILVVEDNKDMRDYIRSIL-AEYYNVLEASQGEEALALLHANNVDFIISDLMMPVMDGMEL 1207

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++K D  +  IP + +TA           K G +A++ KP   ++ +  I   +
Sbjct: 1208 SRRVKNDFSISHIPFLMLTAKTSDEARLESYKMGADAFLLKPFDENMLLARISNIL 1263


>gi|115376279|ref|ZP_01463519.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
 gi|115366704|gb|EAU65699.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
          Length = 614

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V+IV+D+  +++  R+ +   GY   + R+G +AL   R+H+PD+I+MD+++  + G+
Sbjct: 292 RTVLIVDDDPTHVQHVREGLAPQGYRFREARDGAQALSAIREHRPDLILMDVEMPGLGGV 351

Query: 63  EITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E+ + +K +        IPVI +TA    G +    + G + Y+ KP  +      +K  
Sbjct: 352 EVCRIVKANAGEGGFGFIPVILMTARQAAG-KVEGLELGADDYLVKPFDMLELSARVKSM 410

Query: 120 IG 121
           + 
Sbjct: 411 LR 412


>gi|83649524|ref|YP_437959.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637567|gb|ABC33534.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 242

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +++++V+D++   +L +  +E +GY      +G  A+    +++P +II+D+ L  + 
Sbjct: 1   MTERLLLVDDDKGLTRLIKQFLEQNGYPVKVIHDGESAVSWLERNQPQLIILDVMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +++++  +    P+I +T+     DE    + G + Y++KP+   + +  I+  +
Sbjct: 61  GLSVCREVRKHYKG---PIIMLTSLDDDIDEVAGLEVGADDYLAKPVKSRVLLAHIRAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|120597633|ref|YP_962207.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. W3-18-1]
 gi|146294228|ref|YP_001184652.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella putrefaciens CN-32]
 gi|120557726|gb|ABM23653.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. W3-18-1]
 gi|145565918|gb|ABP76853.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella putrefaciens CN-32]
 gi|319427573|gb|ADV55647.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella putrefaciens 200]
          Length = 338

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   N+ +   ++    Y      +G  AL L  +  PD+I++D+ +  ++G 
Sbjct: 4   ATILVVDDTPENIDILVGIL-GEDYKVKVAIDGPRALALVAKSLPDLILLDVMMPGMNGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ K +K++     IPVI VTA +   DE +  + G   YI+KP+S  +    +K ++
Sbjct: 63  EVCKLLKQEPLTCHIPVIFVTALSEVADETQGFELGAVDYITKPVSAPVVKARVKTHL 120


>gi|332533238|ref|ZP_08409105.1| Two-component system response regulator OmpR [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037317|gb|EGI73772.1| Two-component system response regulator OmpR [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+I     N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     EIP++ +TA   + D     + G + YI KP +    +  IK  +  
Sbjct: 67  ICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123


>gi|331271106|ref|YP_004385815.1| two component transcriptional (response) regulator [Clostridium
           botulinum BKT015925]
 gi|329127601|gb|AEB77543.1| Two component transcriptional (response) regulator [Clostridium
           botulinum BKT015925]
          Length = 230

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++++DNE      +  +E   +      +   AL +  + K D+II+DI + E+ 
Sbjct: 1   MKNKILVIDDNEDICTTIKSYLENYDFNVKTVTSCRNALNILNE-KFDLIILDIMMPEMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E    I++       P++ V+A  ++ D+ +    G + YI+KP SL      I+ ++
Sbjct: 60  GIEFCSIIRKKV---SCPILFVSAKILEEDKLQAFAIGGDDYITKPFSLKELKARIESHL 116

Query: 121 GE 122
             
Sbjct: 117 RR 118


>gi|325978470|ref|YP_004288186.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178398|emb|CBZ48442.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 226

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED     ++    +   GY      +G  A+++A ++  DV++MDI +   SG+E
Sbjct: 2   KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMANENAYDVMVMDIMMPVKSGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++I++        +I +TA A   D       G + Y++KP SL   +  ++     
Sbjct: 62  AVQEIRQTGNQSH--IIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118


>gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 219

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED     +     +   GY      +G E L  A +   D+I++DI L  ++G  
Sbjct: 2   RLLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIMLPGMNGYR 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++   +  + P++ +TA   + DE      G + Y++KP S  +    +K  +  
Sbjct: 62  VCAALRAAGD--DTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRR 118


>gi|291286699|ref|YP_003503515.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290883859|gb|ADD67559.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K  K+++++D+    +L  + +E  G+      NG E          D+II+D+ L  
Sbjct: 1   MNKNSKILVIDDDVELCELLSEYLEAEGFSIKAVHNGKEGASTVIDSDFDLIILDVMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G ++ K I+    ++  P++ +TA     D+    + G + Y+ KP +    +  IK 
Sbjct: 61  MGGFDVLKTIRS---VKMTPILMLTAKGDDIDKILGLEIGADDYLPKPYNPRELLARIKA 117

Query: 119 YIGE 122
            +  
Sbjct: 118 ILRR 121


>gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +   +     ++  GY      NG   L+ A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E    +  P+I +TA     D       G + YI KP ++   +  I+  + 
Sbjct: 61  MEVARRLREK---KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|169795908|ref|YP_001713701.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|213157394|ref|YP_002319439.1| AdeR [Acinetobacter baumannii AB0057]
 gi|301344928|ref|ZP_07225669.1| AdeR [Acinetobacter baumannii AB056]
 gi|301509916|ref|ZP_07235153.1| AdeR [Acinetobacter baumannii AB058]
 gi|301595364|ref|ZP_07240372.1| AdeR [Acinetobacter baumannii AB059]
 gi|332854443|ref|ZP_08435375.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332868449|ref|ZP_08438162.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|88758852|emb|CAJ77842.1| AdeR [Acinetobacter baumannii AYE]
 gi|169148835|emb|CAM86704.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|193077374|gb|ABO12180.2| AdeR [Acinetobacter baumannii ATCC 17978]
 gi|213056554|gb|ACJ41456.1| AdeR [Acinetobacter baumannii AB0057]
 gi|306485917|gb|ADM92605.1| AdeR [Acinetobacter baumannii]
 gi|332728019|gb|EGJ59411.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332733374|gb|EGJ64560.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|331085462|ref|ZP_08334547.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407700|gb|EGG87198.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 145

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED++   +     + + GY   Q  NG E L +  + K D+ I+DI +  + 
Sbjct: 1   MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ +T +++E  E    PVI ++A + + D+      G + Y++KP +    M  +   +
Sbjct: 61  GITMTMRLREKYEF---PVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|300118431|ref|ZP_07056177.1| two-component response regulator [Bacillus cereus SJ1]
 gi|298724216|gb|EFI64912.1| two-component response regulator [Bacillus cereus SJ1]
          Length = 208

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+GL+
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYISMTTYDLIVLDIMIPGINGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|299770126|ref|YP_003732152.1| AdeR [Acinetobacter sp. DR1]
 gi|298700214|gb|ADI90779.1| AdeR [Acinetobacter sp. DR1]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G + ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMVVIRAMNGKQAIELHSSQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRVGADDFVVKPFNPNEVIARVQAVLRR 129


>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM
           44985]
 gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 240

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D      L R+ +   G+   +  N  +AL +  +  PD +I+D+ L  + G  +
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++E     E PV+ +TA     D+      G + Y++KP SL   +  ++  +  A
Sbjct: 76  LRRVREMGT--ECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRA 132


>gi|290960601|ref|YP_003491783.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650127|emb|CBG73243.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 464

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+++ED+E   +   D +   G        G + L   R    DV+++D+ L ++ 
Sbjct: 1   MGVRVLLIEDDETIAEPLADGLRHFGLTVHHVATGADGL---RGPYGDVVLLDLGLPDMD 57

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++ + I+      ++P+I ++A   + D     + G + Y++KP S+   +  I+   
Sbjct: 58  GIDVCRGIR---RTSDVPLIILSARGEEADRVLGLELGADDYLAKPFSIRELVARIRAVS 114

Query: 121 GE 122
             
Sbjct: 115 RR 116


>gi|271499886|ref|YP_003332911.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270343441|gb|ACZ76206.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 248

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I ED      + R  +  SG   L   NG +ALEL    KPD++++D+Q+  + G ++
Sbjct: 18  VLIAEDEPEIADILRAYLTRSGLRTLHAANGRQALELHLAMKPDLVLLDVQMPLVDGWQV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
              I+      + PVI +TA     D+    + G + Y+ KP + +  +  ++  +  A
Sbjct: 78  LSGIRLRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVQAVLRRA 133


>gi|256827452|ref|YP_003151411.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583595|gb|ACU94729.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 243

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISG 61
            ++  +D+    ++   ++   GY      +G+EA+          D++I+DI + + +G
Sbjct: 11  HILFADDDADIREVVSIMLRAEGYYVDLAGDGLEAMRYLDNPDSNYDLVILDIVMPQATG 70

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K +++      +PV+ +TA     D+ R    G   Y+ KP S++ F+  +K  + 
Sbjct: 71  YDVCKHLRQ---TSAVPVLFLTARGQDEDKVRGFAFGGNDYLVKPFSIAEFIARVKAMLR 127

Query: 122 E 122
            
Sbjct: 128 R 128


>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1248

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++I EDN +N K+    ++  GY+A    NG  AL+   + + D++ MD Q+ E+ G E
Sbjct: 998  RILIAEDNPVNQKVALYQLQKLGYMADVVENGRRALDALARSRYDIVFMDCQMPELDGYE 1057

Query: 64   ITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T+ ++  + +++   VIA+TA +++GD E+    G + Y+SKP+   +    I+++
Sbjct: 1058 ATRDLRAIEGDVRHTWVIAMTANSLEGDREKCLNAGMDDYVSKPVKPEVLHAAIRRF 1114



 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
           +V+ V+DN+ N  +   L+   G    Q  +G +AL + +         D+ I+D+Q+ E
Sbjct: 845 RVITVDDNDTNRAILHHLLSNWGMREQQAASGKQALSILQAEAGRGRMFDLAILDMQMPE 904

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + GLE+ + +K+D       ++ +T+   + D E +R+ G +AY++KP+  S   + +
Sbjct: 905 MDGLELARAMKKDPRFASARIVMLTSVDRQEDPEALRETGVDAYLTKPVKQSQLYDCL 962


>gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 270

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +L    +   G+      +G  A+  AR+ +PD +++D+ L ++ GL 
Sbjct: 44  RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 103

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   E  E+PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 104 VLARLRR--ERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRS 161


>gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 226

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     +   GY  ++  NG   LE+A + + D+II+D+ L EI+G
Sbjct: 1   MVKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++I++   + E+P+I +TA     D+      G + YI+KP ++   +  I+  +
Sbjct: 61  LEVLRRIRK---VSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116


>gi|162295958|gb|ABX83927.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129


>gi|38230268|gb|AAR14189.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129


>gi|189346221|ref|YP_001942750.1| histidine kinase [Chlorobium limicola DSM 245]
 gi|189340368|gb|ACD89771.1| histidine kinase [Chlorobium limicola DSM 245]
          Length = 691

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++VEDN +N ++   ++    +      NG+EA++  +++   ++ MD+Q+  + GL
Sbjct: 566 RKILLVEDNIINQQVATAMLSKLNFPVDTAMNGLEAIDALKKNTYALVFMDLQMPVMGGL 625

Query: 63  EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E  K I+         +IP+IA+TA A++ D++   + G   +I KP+++      ++K+
Sbjct: 626 EAVKTIRNKETGTADPDIPIIAMTANAIQKDKDECLQAGMNDFIIKPVTIRELQTVLEKW 685

Query: 120 IGE 122
           I  
Sbjct: 686 IPR 688


>gi|325279188|ref|YP_004251730.1| response regulator receiver sensor signal transduction histidine
           kinase [Odoribacter splanchnicus DSM 20712]
 gi|324310997|gb|ADY31550.1| response regulator receiver sensor signal transduction histidine
           kinase [Odoribacter splanchnicus DSM 20712]
          Length = 374

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 62/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D + N+ L + L+   GY  L   NG EALE+ R   PD+I++D+ +  + G E
Sbjct: 9   KLLVVDDVQTNVLLLKALLGKEGYGILVANNGQEALEVIRNENPDLILLDVMMPGMDGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +++K +    EIP+I +TA           K G   +ISKP      M  IK  +
Sbjct: 69  VAERLKSEEFRCEIPIIFLTALDDTQSIVNGFKLGVGDFISKPFRKEELMVRIKHQL 125


>gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
 gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
          Length = 246

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED++   +     +   GY   Q  +G+E LE+  + +  + I+DI +  + G+ 
Sbjct: 11  RILLVEDDKEIREGIEIFLRGQGYRVFQAADGVEGLEILEREEIHLAIVDIMMPRMDGVT 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++E  +    PVI ++A + + D+      G + YI+KP +    +  +  ++  
Sbjct: 71  MVIRLREHYDF---PVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRR 126


>gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1334

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDNE    L   L     Y   + ++G E  E  ++ +PD+++ DI + ++SG+E
Sbjct: 1085 KIIIVEDNEELRGLLARLFSRI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK + E   IPVI +TA   +    +  K G + Y++KP ++          +
Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1200


>gi|256785613|ref|ZP_05524044.1| transcriptional regulatory protein [Streptomyces lividans TK24]
          Length = 221

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M++ED++         +   G+      +G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 1   MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA     D     + G + Y+ KP+   +    I+  +  
Sbjct: 61  RRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 114


>gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 226

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETS--GYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M+K +++V+D      L R  +E    GY  L   +G EALE   +  PDV+I+D+ L +
Sbjct: 1   MMK-ILVVDDESSIRNLIRMQLEMEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPD 58

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G E+ +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K 
Sbjct: 59  TDGYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKN 116

Query: 119 YIGE 122
               
Sbjct: 117 MARR 120


>gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 233

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59
           +  V+I++D++    L +  +E     A+    G E L L  +++    ++I+DI + +I
Sbjct: 1   MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+I+E      IPVI +TA   + D+    + G + Y++KP S++  M  +   
Sbjct: 61  DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|167840679|ref|ZP_02467363.1| DNA-binding heavy metal response regulator [Burkholderia
           thailandensis MSMB43]
          Length = 230

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IVED        +  +  +G++   T++G+  L   +    D+ I+D+ L    G  
Sbjct: 2   KVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        PV+ +TA     D  +  + G + Y++KP   +  +  ++  +  
Sbjct: 62  VVRELR---RTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117


>gi|167031315|ref|YP_001666546.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166857803|gb|ABY96210.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 240

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D++   +L  D ++ +GY  L   +G +  E   + K +++++D+ L    
Sbjct: 1   MSTTLLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGED 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + +Q++    L    VI ++A     D     + G + Y++KP      +  IK  +
Sbjct: 61  GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|40021671|gb|AAR37056.1| VanRD5 [Enterococcus faecium]
          Length = 232

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++  GY   +  NG +AL+     + D+ I+DI L ++ 
Sbjct: 1   MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E       PVI +TA    GD+        + YI+KP +    +  +K  +
Sbjct: 61  GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQL 116

Query: 121 GE 122
            +
Sbjct: 117 RQ 118


>gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 265

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+ VED+++  +  +  +E  G+      +G++ LE  R   PD+ ++D+ +  + G+
Sbjct: 37  ARVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGV 96

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+++S    +PVI ++A A   D     + G + Y++KP  +S+ +  ++  +  
Sbjct: 97  SLCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153


>gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 847

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N      L+E  G+      +G++AL   R+ + D+++MD+++ E+ G E
Sbjct: 727 RILLAEDNRINSLFAAYLLEKLGHSVRAVASGVQALTALREDRFDLVLMDVRMPEMDGAE 786

Query: 64  ITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I+       +IP++A+TA+A++GD ER    G + Y+SKP+  +     I++ 
Sbjct: 787 ATRRIRAGEAGDPKIPIVALTAYALQGDRERFLAVGMDDYVSKPLDTAELERVIERV 843


>gi|310756717|gb|ADP20499.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGNIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129


>gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
 gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
          Length = 225

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED     +     +  SG++     NGM+   LA + + D+I++D+ L    G  
Sbjct: 2   KILVIEDEARTAEYLLKGLTESGFVVDIAANGMDGAHLASEVRYDLILLDVMLPGADGWS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K I++ S   ++PV+ +TA     D  R  + G + Y+ KP + +  +  I++ + ++
Sbjct: 62  VIKMIRQKS---DVPVLFLTARDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQS 118


>gi|265765934|ref|ZP_06093975.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
 gi|263253602|gb|EEZ25067.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
          Length = 1330

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +  + Y      NG EAL + +++ P++II DI + E+ G 
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+   IK D E   IP+I +TA   + +     K G + YI KP ++ I   TI   +
Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLL 1185


>gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
 gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
          Length = 238

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQMDRLLSRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++ +   ++P++ +TA   + D     + G + Y+ KP +    +  I+  +  
Sbjct: 66  ICRRLRQANN--QLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRR 122


>gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 243

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60
           + ++I ED+E         +E + YI +   +G  AL+  +      D++++D+ + ++ 
Sbjct: 8   QTILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLD 67

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++ ++++       +P+I  T      D     + G   YI KP S    +  I+  +
Sbjct: 68  GFQVCQRLRA---TSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSIL 124

Query: 121 GEA 123
             A
Sbjct: 125 RRA 127


>gi|254423297|ref|ZP_05037015.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190786|gb|EDX85750.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 685

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED+E+      + ++   Y      +G   LE A     D++++D+ L  + G+ 
Sbjct: 2   RILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++ +     P++ +TA     ++ R    G + Y++KP+ ++     ++  +  
Sbjct: 62  LCRELRDRNYT--TPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRR 118



 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++ V+D+ + +     L+E  G+      +  +  +   +  PD++I+DI++    G+E
Sbjct: 402 TLLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIE 461

Query: 64  ITKQIKEDSE----LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +   ++ D       Q +P++ +TA      E        + Y+ KPI     +  I   
Sbjct: 462 LCHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNR 519

Query: 120 IGEA 123
           +  A
Sbjct: 520 LERA 523


>gi|184158146|ref|YP_001846485.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332872696|ref|ZP_08440663.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183209740|gb|ACC57138.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|310756669|gb|ADP20467.1| AdeR [Acinetobacter baumannii]
 gi|310756672|gb|ADP20469.1| AdeR [Acinetobacter baumannii]
 gi|310756675|gb|ADP20471.1| AdeR [Acinetobacter baumannii]
 gi|310756678|gb|ADP20473.1| AdeR [Acinetobacter baumannii]
 gi|310756681|gb|ADP20475.1| AdeR [Acinetobacter baumannii]
 gi|310756684|gb|ADP20477.1| AdeR [Acinetobacter baumannii]
 gi|310756687|gb|ADP20479.1| AdeR [Acinetobacter baumannii]
 gi|310756690|gb|ADP20481.1| AdeR [Acinetobacter baumannii]
 gi|310756693|gb|ADP20483.1| AdeR [Acinetobacter baumannii]
 gi|310756696|gb|ADP20485.1| AdeR [Acinetobacter baumannii]
 gi|310756699|gb|ADP20487.1| AdeR [Acinetobacter baumannii]
 gi|310756702|gb|ADP20489.1| AdeR [Acinetobacter baumannii]
 gi|310756705|gb|ADP20491.1| AdeR [Acinetobacter baumannii]
 gi|310756708|gb|ADP20493.1| AdeR [Acinetobacter baumannii]
 gi|310756714|gb|ADP20497.1| AdeR [Acinetobacter baumannii]
 gi|322508464|gb|ADX03918.1| AdeR [Acinetobacter baumannii 1656-2]
 gi|323518087|gb|ADX92468.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332739090|gb|EGJ69950.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129


>gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 232

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG E+LE+   +   + I+DI + ++ G+E+
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 66  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120


>gi|150006575|ref|YP_001301319.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254881522|ref|ZP_05254232.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294775465|ref|ZP_06740978.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|319642909|ref|ZP_07997545.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
 gi|149934999|gb|ABR41697.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254834315|gb|EET14624.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294450706|gb|EFG19193.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|317385457|gb|EFV66400.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++    + +++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM-ELTQYNLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K++     IP+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|149280656|ref|ZP_01886769.1| two-component system sensor histidine kinase/response regulator
           hybrid [Pedobacter sp. BAL39]
 gi|149228596|gb|EDM34002.1| two-component system sensor histidine kinase/response regulator
           hybrid [Pedobacter sp. BAL39]
          Length = 707

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED+   +          GY  L+ +NG +AL+   +H+ D++I D+ +  ++G+
Sbjct: 447 QTVLVVEDDPSLLDFLSKSFTAEGYYTLRAKNGKDALKQLDKHQVDLVISDVMMPVMTGV 506

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ + IK D     +PV+ +TA      E +  + G +AYI+KP         IK  +
Sbjct: 507 ELCRIIKNDIAYSHLPVVLLTAKTNTEAEIQGLESGADAYIAKPFKWKQLSLIIKNLL 564


>gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
 gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
          Length = 233

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D      L +  ++  G+      NG +AL LA  +KPD  I+D+ +  + G  
Sbjct: 8   KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++      + P + +TA     D       G + Y++KP SL   +  ++  +  
Sbjct: 68  LLNKLRA--AGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124


>gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163]
 gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
 gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|307546290|ref|YP_003898769.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
 gi|307218314|emb|CBV43584.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
          Length = 725

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N ++   ++   G       +G EALE       D+I MD+Q+ ++ GL
Sbjct: 476 ARLLVVEDNPVNQQVASAMLTKLGCRVSVACSGREALERVETECFDLIFMDVQMPDMDGL 535

Query: 63  EITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+T++++E  +   E+P++A+TA    GD+ R    G   Y+ KP+   +    +++++ 
Sbjct: 536 EVTRRLRERGDWMAEVPIVAMTAGGPGGDQARCLAAGMNGYLVKPLFQDVLQAILRRHLQ 595

Query: 122 E 122
            
Sbjct: 596 R 596


>gi|257875469|ref|ZP_05655122.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
 gi|257809635|gb|EEV38455.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
          Length = 225

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++K+++VED +    L    +    +  +   +  EA     Q+   + I+D+ L +I+G
Sbjct: 1   MEKILLVEDEKEISDLIAFYLRNENFSVITCADANEAQVQIEQNSFSLAILDVMLPDITG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ K I++       P+I +TA + + D+      G + YI+KP      +  +K  I 
Sbjct: 61  FDLCKIIRKKHHY---PIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E         ++  GY      +G   LE A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEENLANFVNLELKHEGYETDVELDGRAGLEAALNEDFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E+   +  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVARRVREE---KNTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032]
 gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis
           z3032]
 gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|307152389|ref|YP_003887773.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
 gi|306982617|gb|ADN14498.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 724

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L RD ++  GY       G   L  A+    D+I++DI+L ++ G EI
Sbjct: 13  ILIVDDLPDNLRLLRDTLKGQGYKVRSCTTGAMVLRGAKAAVTDLILLDIKLPDMDGYEI 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K D +   IPVI ++A     D+ +    G   YI+KP  +   +  +  ++
Sbjct: 73  CRQLKADEQTASIPVIFLSALNNTFDKVQGFTFGGADYITKPFQVEEVLARVATHL 128


>gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1195

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 67/116 (57%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N ++  ++++  G       +G  ALEL      DV++MD+ +  + G E
Sbjct: 854 RVLLVEDNRINQEVAAEILQQYGAQVTLADHGAAALELLTGPGFDVVLMDLHMPVMDGFE 913

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I+E  +   +PVIA+TA  ++ D ER    G   +++KPI+    +  +K++
Sbjct: 914 ATRKIRELYDSATLPVIAMTAAVLQDDRERCTAAGMVDFVAKPINPLELVTVLKRF 969


>gi|5353563|gb|AAD42180.1|AF130997_1 response regulator [Enterococcus faecium]
 gi|154267919|gb|ABS72054.1| response regulator [Ruminococcus gauvreauii]
          Length = 232

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++  GY   +  NG +AL+     + D+ I+DI L ++ 
Sbjct: 1   MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E       PVI +TA    GD+        + YI+KP +    +  +K  +
Sbjct: 61  GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQL 116

Query: 121 GE 122
            +
Sbjct: 117 RQ 118


>gi|291279601|ref|YP_003496436.1| hypothetical protein DEFDS_1212 [Deferribacter desulfuricans SSM1]
 gi|290754303|dbj|BAI80680.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1099

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++VEDN++N      L++    +     NG+EA+E  + +  D+I MDIQ+ ++ G 
Sbjct: 859 AKILLVEDNKINQLFLSTLLKQKDIVVDIANNGLEAIEKVKTNNYDLIFMDIQMPQMDGY 918

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E TK+I++ +  + IP+IA+TA A+  D+ +  + G   ++SKP++       + K+I
Sbjct: 919 ETTKKIRKFN--KSIPIIALTAAALVHDKNKALEAGMNDHLSKPVNKDELFLVLSKFI 974


>gi|300769838|ref|ZP_07079718.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763289|gb|EFK60105.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 234

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED +   +L    +E  GY  +   +G++ALE+ R    D++I+DI L +++G
Sbjct: 1   MNEILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ K I+ DS   ++PV+ +TA     +       G + Y+SKP  L      I+  + 
Sbjct: 61  LDVCKAIR-DSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|167763302|ref|ZP_02435429.1| hypothetical protein BACSTE_01675 [Bacteroides stercoris ATCC 43183]
 gi|167698596|gb|EDS15175.1| hypothetical protein BACSTE_01675 [Bacteroides stercoris ATCC 43183]
          Length = 1310

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN   +    D +           NG EALE+ RQ  PD+II DIQ+ +++G E
Sbjct: 1053 TILVVDDNMELVDYLTDAMRPYFKDVRTAYNGEEALEMCRQWHPDIIISDIQMPKMNGYE 1112

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K++KE+ ++   PVI +TA   +       K G + Y++KP  +S     I   +
Sbjct: 1113 LCKRVKEELDISHTPVILLTARNDEASRIFGYKNGADTYLTKPFEISTLYTAIYNQL 1169


>gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 228

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +   +     ++   Y     +NG + LELA     D I++D+ L E++G
Sbjct: 1   MSRILIIEDEKNLSRFVELELQHEEYETEVCKNGRQGLELALDEDWDAILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L+I +++++   ++  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  LDICRRVRQ---VKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|114332343|ref|YP_748565.1| response regulator receiver protein [Nitrosomonas eutropha C91]
 gi|114309357|gb|ABI60600.1| response regulator receiver protein [Nitrosomonas eutropha C91]
          Length = 121

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 63/117 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D+  +  +   ++  +GY      +G E +  AR+  PD+++MD+ +  I+G 
Sbjct: 4   RTILVVDDSPTDRHIISSILTQNGYQVGVAESGEEGVTKARETWPDLVLMDVVMPGINGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + T+ +  DS  + IP+I  T    + D+    + G + YI+KP+  +  ++ I + 
Sbjct: 64  QATRMLARDSATRHIPIILCTTKDQQTDKIWGLRQGAQDYITKPVMAAELLQKIARL 120


>gi|328874987|gb|EGG23352.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1142

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 1    MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            M  +V++V+DN +N ++   +++++G  A    +GMEAL+       D+I +DI + ++ 
Sbjct: 1007 MEIRVLVVDDNGVNRQVALRMMQSAGCNADLASSGMEALDKMETTHYDIIFLDIMMPQMD 1066

Query: 61   GLEITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            G ++TK+I+E        + IP++A+TA A K DE +  K G   YI KP+ +S     I
Sbjct: 1067 GFQVTKEIREREVQKGVTRMIPIVAMTANAFKEDEAQCLKCGMNDYIPKPMKISQVRLMI 1126

Query: 117  KKY 119
             K+
Sbjct: 1127 NKW 1129



 Score = 42.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 17/131 (12%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           +V+++E  +    + R   E        T + + A+++  Q     +   VIIMD     
Sbjct: 858 RVLLIEKKQSQRNILRQQFEAWNIQLETTTDDVSAMQMWNQKIKEDNPYSVIIMDSLTIG 917

Query: 59  ISGLEITKQIKEDSELQEIPVIAV--------TAFAMKGDEERIRKGGCEAYISKPISLS 110
              L +++ I + S  +  PV  +        +A          RK G    ++KP+ +S
Sbjct: 918 EGSLTLSQNITKKSHGKANPVRFLLLLPLKMRSAVLESE----ARKCGIGEIVTKPLRMS 973

Query: 111 IFMETIKKYIG 121
             ++++   +G
Sbjct: 974 KLLDSLVTILG 984


>gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 234

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED++   +     + + GY   Q  NG E L +  + K D+ I+DI +  + 
Sbjct: 1   MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ +T +++E  E    PVI ++A + + D+      G + Y++KP +    M  +   +
Sbjct: 61  GITMTMRLREKYEF---PVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC
           9905]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQNN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 266

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+ VED+++  +  +  +E  G+      +G++ LE  R   PD+ ++D+ +  + G+
Sbjct: 37  ARVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGV 96

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+++S    +PVI ++A A   D     + G + Y++KP  +S+ +  ++  +  
Sbjct: 97  SLCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153


>gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 222

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ ED+    +     +   GY    + +G +ALE A     D+I++D+ L E+ GLE+
Sbjct: 4   VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +      PV+ +TA   + D       G + Y++KP  L+  +  ++  +  
Sbjct: 64  ARRIRAEGHG--TPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|291278719|ref|YP_003495554.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290753421|dbj|BAI79798.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 231

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           MLK K+ I+ED++    +    ++  G       NG EAL+   +  PD+II+D+ L +I
Sbjct: 1   MLKQKIFIIEDDKKIANIVSSYLKHEGVEVFHFINGKEALDAVIELNPDLIILDLMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG E+ + IKE     +IP+I +TA + + ++      G + Y++KP S    +  +K  
Sbjct: 61  SGEELCQDIKEMV---DIPIIMLTAKSSEEEKLAGFALGADDYVTKPFSPRELIYRVKAI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LKR 120


>gi|326317438|ref|YP_004235110.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374274|gb|ADX46543.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 230

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+EDN   +       E  GY+    R+G   L +A QH  D I++D+ L  + G
Sbjct: 1   MTRLLIIEDNPELVANLYGFFEPLGYVLDDARDGATGLRMATQHDYDAILLDLMLPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + ++++E+ +   +PV+ +TA     D  +    G + Y+ KP SL      I+  + 
Sbjct: 61  MALCRKLREEYQNP-VPVLMLTARDPVDDRVQGLAAGADDYLVKPFSLRELDARIQALVR 119

Query: 122 EA 123
            A
Sbjct: 120 RA 121


>gi|262371771|ref|ZP_06065050.1| twitching motility protein [Acinetobacter junii SH205]
 gi|262311796|gb|EEY92881.1| twitching motility protein [Acinetobacter junii SH205]
          Length = 120

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+      FR+++   GY  L+  NG + + +A+   PD+++MD+ +  ++G
Sbjct: 1   MARILIVDDSPTETFRFREILTKHGYEVLEATNGADGVTMAQAELPDLVLMDVVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+QI +  + Q IPV+ V+      D    ++ G   Y++KPI     ++ IK+ +
Sbjct: 61  FQATRQISKGKDTQHIPVVIVSTKDQATDRVWGKRQGACDYLTKPIDEQQLIDVIKQLL 119


>gi|153811679|ref|ZP_01964347.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
 gi|149832420|gb|EDM87505.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IVED+     L    ++T  Y  L   NG EA+  A  H PD+I++D+ L ++
Sbjct: 1   MNKTSILIVEDDRPIRNLIVTTLKTHEYKYLTAENGREAILEASSHNPDIILLDLGLPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G+++ K+I+       +P+I ++A +   D+      G + YI+KP S+   +  I+
Sbjct: 61  EGVDVIKKIR---TWSNMPIIVISARSEDSDKIEALDAGADDYITKPFSVEELLARIR 115


>gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 250

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           ++++V+D     +L R  ++  GY      +G   L  AR    PD+I++D  L + SG+
Sbjct: 13  RILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSGV 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +I ++I+        P++ +T      D  +    G + Y+ KP S+   M  ++     
Sbjct: 73  DICQRIRSSGVT--TPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRR 130

Query: 123 A 123
           A
Sbjct: 131 A 131


>gi|74058492|gb|AAZ98835.1| VanRD [Enterococcus gallinarum]
          Length = 232

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++  GY   +  NG +AL+       D+ I+DI L +I 
Sbjct: 1   MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGTDALKCIESTPLDLAILDIMLPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E       PVI +TA    GD+        + YI+KP +    +  +K  +
Sbjct: 61  GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSI-ADDYITKPFNPLEVVARVKAQL 116

Query: 121 GE 122
            +
Sbjct: 117 RQ 118


>gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88]
 gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88]
          Length = 222

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED +  ++   + +  SGY+     NG EA E+      D++I+DI L  + G  
Sbjct: 2   KLLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPLMDGFS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I+E ++     +I +TA +   D       G   Y+ KP         I+  +  
Sbjct: 62  VLKSIREHNKTVN--IIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRR 118


>gi|37519850|ref|NP_923227.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210841|dbj|BAC88222.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 230

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++ ED+E       + +    Y+     +G  A   A  +  DV+++D+ L EI G
Sbjct: 1   MVRILLAEDDERIAIPLAEDLTHQHYLVDVAADGKAAWHYATSYHYDVLLLDVMLPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++E     E P++ +TA     D       G + Y+ KP SL      ++  + 
Sbjct: 61  FALCRRLRE--AGYEQPILMLTALDRTTDRVAGLDSGADDYLVKPFSLEELGARVRALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|329956927|ref|ZP_08297495.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328523684|gb|EGF50776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 868

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++++DN       + L+    Y  L   +G   + LA ++ PDVII D+ +  + GLE
Sbjct: 622 TVLVIDDNADIRHYVKALLSKE-YRVLDAADGAAGIRLAMKYVPDVIISDVMMPGMDGLE 680

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K + +   IPVI +TA ++     +  +GG ++YISKP +  + +  I+  I
Sbjct: 681 CCRRLKGELQTCHIPVILLTACSLDEQRIQGYEGGADSYISKPFNSQLLLSRIRNLI 737


>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
            brasiliensis LMG 20546]
 gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
            brasiliensis LMG 20546]
          Length = 1318

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 77/118 (65%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VEDNE+N ++   L++ +    L   NG +A+ +  QH  D+++MD+Q+  + G+
Sbjct: 991  QTILLVEDNEVNQEVAIGLLKGTNVNVLTADNGQQAINMLEQHPVDLVLMDMQMPVLDGV 1050

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T+QI+ + + Q++P+IA+TA AM+ D +R    G  ++++KPI++    +T+ +++
Sbjct: 1051 SATEQIRRNPDWQQLPIIAMTANAMQSDVDRCIAAGMNSHLAKPINVRNLYQTLSQHL 1108



 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 57/114 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+ ++V+DN+    +   L+    + A    NG EAL+  R  + D++ +D  +  ++G+
Sbjct: 852 KRALVVDDNDSARNILVTLLNAMHFDAKAVSNGFEALDEIRNSQFDLLFVDWNMPGLNGI 911

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           E+ +  + +  L+      VTA+  +   ++      ++ I KP++ S  ++ I
Sbjct: 912 ELLQTAQNEQLLEHSKNFLVTAYGREISLDQASSKLVDSLIVKPVNPSNLLDAI 965


>gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 258

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED+    ++    +   G+  +   +G E ++L RQ+  D+I++D+ L +++G
Sbjct: 29  MQQILLVEDDRSISEVVDHYLTKEGFHVVHAFDGEEGIQLFRQNAFDLILLDLMLPKLNG 88

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ K I+E S+   IPV+ ++A     ++      G + YI+KP S+      +K  I 
Sbjct: 89  MDLLKIIREQSK---IPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIR 145

Query: 122 EA 123
            A
Sbjct: 146 RA 147


>gi|304394995|ref|ZP_07376879.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304357248|gb|EFM21611.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 246

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+     L  + ++ +G    +  +G +          D+I++D+ +    GL 
Sbjct: 6   HILIVDDDREIRSLIAEYLKKNGLRTTEVADGRQMRSFLDNMPVDLIVLDVMMPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + +  PV+ +TA + + D     + G + Y+ KP      +  IK  +  
Sbjct: 66  LCRELRS-GKHKGTPVLMLTARSEETDRIIGLEMGADDYLVKPFVPRELLARIKAVLRR 123


>gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     +   G+  ++  +G +AL+L   H+ D++I+D+ +  + G
Sbjct: 1   MQNILVCDDDKQIVEAIDIYLTGEGFHVIKAYDGYDALKLLEDHEVDLMILDVMMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +++E      IP+I ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 61  IRTTLKVRE---TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 71/120 (59%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VEDN +N ++   ++E  G       NG EAL+       ++++MD  + ++ G 
Sbjct: 663 RRVLVVEDNRVNQQVAVGMLERLGCRVEVVSNGQEALDAMSGKVYELVLMDCHMPQMDGY 722

Query: 63  EITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E T+QI+  ++  +++P+IA+TA   KGD ++    G   Y+ KP+ LS+  + ++ ++G
Sbjct: 723 EATRQIRIREAGKKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWLG 782



 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 57/117 (48%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V+IV+D+       R+++E  GY   +  NG +AL   +Q  PD+++MD  +  + G  
Sbjct: 926  RVLIVDDDRTMRMALRNVLEKGGYWIDEVINGSQALAFCKQQMPDLVLMDAVMPVLDGFN 985

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               QI++    +  PV+ +TA       E     G   YI KP+  S+  + + + +
Sbjct: 986  ACAQIRDLPGSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLQKRVARLL 1042



 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           +++IVED+ ++ +       + G       NG +AL++ R         D++++D    +
Sbjct: 520 RLLIVEDSTVSRRFLGQTFSSWGMYHGCAENGQQALKMLRSAVAEGRSYDLVLVDENTPD 579

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + GLE+ +QI EDS +  + +I +         +     G   Y++KP+  S    TI
Sbjct: 580 LKGLELAQQIAEDSLIASVKIILM-GRQRHPVSDISPLSGVVNYVAKPVQQSSLYNTI 636


>gi|299538439|ref|ZP_07051722.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298726026|gb|EFI66618.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 239

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVED      + RD +  + + +   R G EA+   ++ KPD II+D+ L +  G+E
Sbjct: 7   TVLIVEDENDIANIIRDYLSVNQFDSHIVRTGHEAIHYLQESKPDFIILDLSLPDCDGIE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++I+E+S    + ++ ++A     D+      G + Y++KP SLS  +  I  ++  
Sbjct: 67  ICRKIRENS---NVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 122


>gi|237711729|ref|ZP_04542210.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|265753147|ref|ZP_06088716.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|229454424|gb|EEO60145.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|263236333|gb|EEZ21828.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1343

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2    LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
            +K   +++VEDNE       + +E   +      NG EAL++ R +  D++I DI +  +
Sbjct: 1077 MKGYTLLLVEDNESMRSFIFERLEVL-FTVETAVNGQEALDVLRSNHIDLVISDIMMPVM 1135

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +G E+ K+IK D +L  IPVI +TA      +    K G EAY+ KP S +     I   
Sbjct: 1136 NGYELCKEIKGDIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKSQILSL 1195

Query: 120  I 120
            +
Sbjct: 1196 L 1196


>gi|228934470|ref|ZP_04097305.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825107|gb|EEM70904.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 226

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+     P + +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQKLRADNHT--TPALLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
 gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
          Length = 225

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D     KL +D +E  G+I ++  +GMEA+++  ++K   +II+D+ +  + G 
Sbjct: 5   KILVVDDESRMRKLVKDFLEREGHIIIEAADGMEAMDIFYENKDIALIILDVMMPRMDGW 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ ++++    L ++P+I +TA   + DE +  + G + YISKP S  I +  +   +  
Sbjct: 65  QVCREVRA---LSQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKR 121


>gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia]
 gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 227

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +     ++  G+     ++G E L + R+   DV I+D+ L ++SG+E
Sbjct: 2   RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++   E ++ PV+ +TA +   D+    K G + Y+ KP  +   +  +   +  A
Sbjct: 62  LIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 119


>gi|119487004|ref|ZP_01620876.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119455933|gb|EAW37067.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 355

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+DNE+N  L    I   GY  +   NG EALE+ R    D++++DI + +++G ++
Sbjct: 10  VLIVDDNEVNRDLLARRITREGYQVMLASNGFEALEMMRSQPLDLVLLDIMMPQMNGYQV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +K D  L+ IP+I ++A        R  + G E Y+SKP +  +    I   +
Sbjct: 70  LEAVKADQSLRYIPMIMISAVNDIESVVRCIELGAEDYLSKPFNPVLLRARINACL 125


>gi|114324578|gb|ABI63596.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1223

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL   ++E   +      NG+EA E  ++ + D ++MD+Q+  + G E 
Sbjct: 1014 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1073

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T +I+E   D+ +   PVIA+TA AM GD E+      + Y+SKP+  +  ++TI +
Sbjct: 1074 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1130


>gi|90412688|ref|ZP_01220689.1| putative transcriptional regulator OmpR [Photobacterium profundum
           3TCK]
 gi|90326263|gb|EAS42682.1| putative transcriptional regulator OmpR [Photobacterium profundum
           3TCK]
          Length = 239

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  I+  +  
Sbjct: 66  ICRRLRNANSV--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRR 122


>gi|49480178|ref|YP_035256.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331734|gb|AAT62380.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 896

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|163938904|ref|YP_001643788.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
 gi|163861101|gb|ABY42160.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
          Length = 896

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ +E      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|239905419|ref|YP_002952158.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239795283|dbj|BAH74272.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++D+    K+  D +   GY   +  +G EA +   Q +P V+I+DI +    GLE+
Sbjct: 5   VLIIDDDLKLRKMLGDYLAGYGYEVRELPDGGEAAKALEQLRPSVVILDIMMPGKDGLEV 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              I+       +PVI +TA     D     + G + Y+ KP +L   +  I+  +  
Sbjct: 65  LADIR---RASTVPVIMLTAKGDPMDRVVGLEMGADDYLPKPFNLRELLARIRAALRR 119


>gi|153938240|ref|YP_001391588.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934136|gb|ABS39634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319616|gb|ADF99993.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 234

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+     + ++ +   GY   Q  +G+EA+E  +     ++IMD+ +  + G+E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+E S+   +P+I ++A     D+      G + YI KP S+   +  +K  I  A
Sbjct: 65  SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121


>gi|146284264|ref|YP_001174417.1| type IV pilus response regulator PilH [Pseudomonas stutzeri A1501]
 gi|145572469|gb|ABP81575.1| type IV pilus response regulator PilH [Pseudomonas stutzeri A1501]
 gi|327482647|gb|AEA85957.1| type IV pilus response regulator PilH [Pseudomonas stutzeri DSM
           4166]
          Length = 121

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 72/119 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IV+D+   M     ++E  G++ L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARVLIVDDSPTEMYKLTAMLEKHGHVVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+Q+ +DSE   IPVI VT    + D+   ++ G + Y++KP+  +  ++T+   +
Sbjct: 61  FQATRQLTKDSETSHIPVIIVTTKDQETDKVWGKRQGAKDYLTKPVDEATLLKTLNAVL 119


>gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 690

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L RD +  +GY      NG+E +   R   P +I++DI L    G++I
Sbjct: 473 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 532

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++       +P++ +TA   + D       G + YI KP S    +  +K  +  
Sbjct: 533 CRELRS---FSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRR 587


>gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++++D    + + R  +E  G    +   G  ALE   +  PD+II+D+ L +++G 
Sbjct: 5   KRVLVIDDENKIVDVIRSYLERDGAEVFEAFEGKNALETFERVNPDLIILDLMLPDMTGE 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI K I++ S    +P+I +TA   +         G + Y++KP S    M  I   +  
Sbjct: 65  EICKAIRKKSR---VPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRR 121


>gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 244

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISG 61
           + +++VED        R  +   GY       G  AL+  R   PD+II+DI L   I G
Sbjct: 5   QHILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           LE+ ++I+   E   +P++ +TA     D       G + Y+ KP +    +  +
Sbjct: 65  LEVCRRIRAAGEG--MPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARV 117


>gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
 gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
          Length = 244

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 11  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 71  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 127


>gi|261407147|ref|YP_003243388.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283610|gb|ACX65581.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED    ++  +  ++  G+  L    G EAL +AR  +PD++++D  L E S
Sbjct: 1   MEPKLLIVEDEPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEKS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           G+++ ++I++        +I VTA + + D+    + G + Y++KP SL   
Sbjct: 61  GIDVCREIRQ---TSHCGIIMVTARSDESDKIVGLEIGADDYLTKPFSLREL 109


>gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 239

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++ +  +     P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|15889689|ref|NP_355370.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157595|gb|AAK88155.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 309

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +    D +E SG+ AL   +G  AL +A +  PD+I++D  +  + G E 
Sbjct: 13  VLLVDDSPDALGFLTDALEQSGFSALIATSGQAALNIAERITPDIILLDAVMPVMDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K ++ + ++PVI +T         R  + G   Y++KPI++      I+ ++  A
Sbjct: 73  CRRLKANAAVAQVPVIFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLSNA 131


>gi|186682208|ref|YP_001865404.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464660|gb|ACC80461.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 371

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L   ++   GY      NG  AL   +   PD+I++DI +  ++G E+
Sbjct: 11  ILIVDDTLDNLRLLSAMLTEQGYEVRSVTNGSMALIGIQAQPPDLILLDITMPGMNGYEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + + QEIPVI ++A     D+ +    G   +I+KP  +   +  ++  +
Sbjct: 71  CQRLKSNPQTQEIPVIFISALNEVFDKVKAFSVGGVDFINKPFQIEEVVARMEHQL 126


>gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
 gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IVED +   +     ++  GY      NG E LE A +   D+I++D+ L E+ 
Sbjct: 1   MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++ +   +   ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|302539959|ref|ZP_07292301.1| sensor histidine kinase/response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457577|gb|EFL20670.1| sensor histidine kinase/response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 1149

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN        DL+    +  L   +G  AL+ A  H  D+++ D+ +  + G  
Sbjct: 642 RLLVADDNADVRSYLGDLLGRE-HDVLLAADGRAALDTALAHPVDLVLTDVMMPRLDGFG 700

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + + ++ D     +P+I +TA A +    R    G + Y++KP S    +  +   +
Sbjct: 701 LVRALRADPRTTRLPIIMLTARAGEESTVRGLGAGADDYLAKPFSARQLLARVSANL 757


>gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1082

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D+    +L R  ++  GY     ++G EA+   +Q+ PD++I+DI + EI+G 
Sbjct: 875 KTILIVDDDPSIRELLRQELDAEGYNVRLAKDGREAISQIKQNPPDLVILDIIMPEINGF 934

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++   +K D E Q IP++ V+A        R  + G + Y++KP++    ++ +K     
Sbjct: 935 DVAAILKHDPETQHIPILVVSADDSVS---RGYQVGVDKYLTKPVAQETLLQEVKSLFAR 991



 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVII 51
            K+V+IV+ +   +++  ++++T GYI  QT+   E L   R  KPD++I
Sbjct: 996  KRVLIVDRDISTLEILNEVLKTQGYIVSQTQTQEEFLPQIRAIKPDLVI 1044


>gi|288905481|ref|YP_003430703.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306831564|ref|ZP_07464722.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|288732207|emb|CBI13772.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426349|gb|EFM29463.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 226

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED     ++    +   GY      +G  A+++A ++  DV++MDI +   SG+E
Sbjct: 2   KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMANENAYDVMVMDIMMPVKSGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++I++        +I +TA A   D       G + Y++KP SL   +  ++     
Sbjct: 62  AVQEIRQTGNQSH--IIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118


>gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 220

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +  +  R  +   G+      +G  AL  A     D++++D+ L +  GL+
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PV+ VTA     D  +    G + Y+ KP  L      ++  I  
Sbjct: 62  VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118


>gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 224

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I GL+
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPGIDGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQRLRADNNT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 909

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED E N  L +  + +         NG  A++  +  + DV++MDIQ+  + G+ 
Sbjct: 780 RILLVEDAEDNCLLIQTYLRSEPVEIDVAENGQVAVDKFKTGQYDVVLMDIQMPVMDGIT 839

Query: 64  ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++I++    +   + PVIA+TA AM+ D ER  + GC  +++KPI     +E + ++ 
Sbjct: 840 ATREIRQWERRKGRLQTPVIALTANAMREDMERSLEAGCNDHLTKPIKKKTLLEALYRFS 899

Query: 121 GEA 123
           G +
Sbjct: 900 GRS 902



 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 68/124 (54%), Gaps = 5/124 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQE 58
           +V+I++DNE N  + R+ +++ G + ++   G E +       A+     ++++D ++ E
Sbjct: 635 RVLIIDDNETNRIILRETVKSWGVVPVEASGGAEGIAEMKRAKAQGLPYQLVLLDCRMPE 694

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G ++ ++I+ + E  E  V+ VT+     D +RI++ G  AY+ KP+  +  ++T+  
Sbjct: 695 MDGFQVAERIQAEVEFCEATVLMVTSDNRNDDIQRIKQLGLAAYLVKPVKRNDLLKTVLS 754

Query: 119 YIGE 122
            +  
Sbjct: 755 VLER 758


>gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666]
 gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 245

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I++D+     L R  +   G+  +   +      +  +   D+I++D+ +    GL 
Sbjct: 12  KILILDDDARIRDLLRRYLAQEGFEVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLS 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y++KP +    +  I   +  
Sbjct: 72  ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRR 128


>gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae]
 gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
 gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +     ++  G+     ++G E L + R+   DV I+D+ L ++SG+E
Sbjct: 2   RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++   E ++ PV+ +TA +   D+    K G + Y+ KP  +   +  +   +  A
Sbjct: 62  LIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 119


>gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021]
 gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Sinorhizobium meliloti
           1021]
 gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED+    +   D ++ +GY+  Q  +G E   L      D +I+DI L E+ G+ 
Sbjct: 2   RILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++ + D +   +PV+ +TA     D+      G + Y++KP  +   +  I+  I  A
Sbjct: 62  VLEKWRADGKT--MPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRA 119


>gi|148261169|ref|YP_001235296.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146402850|gb|ABQ31377.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
          Length = 262

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D+    +L    +E   +     R+  EA          ++++D+ L   SG
Sbjct: 27  MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  + ++ +S+   +P+I +TA   + D     + G + Y++KP +    +  I+  + 
Sbjct: 87  IDFARWLRGESQ---VPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLR 143

Query: 122 E 122
            
Sbjct: 144 R 144


>gi|67920984|ref|ZP_00514503.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67857101|gb|EAM52341.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 595

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   ++  +G+      +G  AL  A+   PD+I++D+++ +I G ++
Sbjct: 13  ILIVDDKPANLRILSTILTKAGHKVRAVTSGNMALITAKTMPPDIILLDVKMPDIDGYQV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K+  E  EIP+I ++A     ++ +  + G   YI KP      +  +  +I
Sbjct: 73  CQKLKQFPETAEIPIIFLSALQDVENKVKAFEAGGVDYIIKPFQFEEVLARVSIHI 128


>gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CDC1551A]
          Length = 230

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+ A    +G  AL    +   D++++D+ L  +SG
Sbjct: 4   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 63

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 64  TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 120

Query: 122 E 122
            
Sbjct: 121 R 121


>gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 237

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++++D E   +L +  +   GY+    + G E LE A  H  D+II+D+ L EI+
Sbjct: 1   MDKSVLVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVMLPEIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ KQI++       P+I VTA     D+      G   YI+KP  +   +  ++  +
Sbjct: 61  GVEVLKQIRKVDN--HTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASM 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|306833709|ref|ZP_07466836.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424479|gb|EFM27618.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 226

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED     ++    +   GY      +G  A+++A ++  DV++MDI +   SG+E
Sbjct: 2   KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMATENAYDVMVMDIMMPVKSGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++I++        +I +TA A   D       G + Y++KP SL   +  ++     
Sbjct: 62  AVQEIRQTGNQSH--IIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118


>gi|288801698|ref|ZP_06407140.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
 gi|288335740|gb|EFC74173.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
          Length = 878

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++DN       R ++ +  Y   +  +G   LELAR+  PD+++ DI +  + GL  
Sbjct: 637 VLIIDDNVDIRTYLRSVL-SEKYNVSEAADGKAGLELARKIVPDIVLSDIMMPVMDGLAF 695

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K D  +  IPVI +TA ++        + G +AY+SKP SL +    I   I
Sbjct: 696 CQQLKTDKAISHIPVILLTARSLDEQRAEGYEHGADAYLSKPFSLRLLFSRIDNLI 751


>gi|260222272|emb|CBA31670.1| Response regulator mprA [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 248

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++IVED+EL        +  +G+      +G +A  L    + D +++D+ L  + G
Sbjct: 16  MAHLLIVEDDELLRDGLCAQLVHAGHSVSSASDGAQAQGLLESTRFDGVVLDLGLPVVDG 75

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + + I++   L  +PV+ +TA     D  +    G + Y++KP +++  +  ++  + 
Sbjct: 76  IAVLQWIRQ--RLAALPVLILTARDGVDDRVQGLNAGADDYLTKPFNMAELLARLQAMLR 133

Query: 122 EA 123
            +
Sbjct: 134 RS 135


>gi|227484933|ref|ZP_03915249.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227237088|gb|EEI87103.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 231

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++I++D +   +  +  ++  GY  ++  +G EAL +  + +P V I+DI L  IS
Sbjct: 1   MNNKILILDDEDPIRQFMKINLDYQGYQTVEAASGEEALRIFDEEQPAVAILDIMLPGIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+  S +    +I V+A +   D+    + G + YI KP +    +  +K  +
Sbjct: 61  GFEVCEKIRTKSPMTG--IIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVKSLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|119898694|ref|YP_933907.1| two-component response regulator [Azoarcus sp. BH72]
 gi|119671107|emb|CAL95020.1| probable two-component response regulator [Azoarcus sp. BH72]
          Length = 301

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 1   ML---KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQL 56
           M+    ++++V+D  +N KL  +L+E   +  +  ++G +ALE  +     D+I++D+ +
Sbjct: 1   MMVERHRILVVDDERINRKLLSELLEEH-HDVVIAKSGEQALERVQADSAVDLILLDVVM 59

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             +SG ++ +++K     +++PVI +T+     DEE     G   YI+KP    I    +
Sbjct: 60  PGMSGHDVLRRLKASDATKDVPVIFITSLNSVDDEEIGLDLGAADYITKPFHPGIVRLRV 119

Query: 117 KKYIG 121
           + ++ 
Sbjct: 120 ENHLR 124


>gi|170728288|ref|YP_001762314.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813635|gb|ACA88219.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 221

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IVED+E    +     + SGY      +G E +   + ++PD I++DI L  +S
Sbjct: 1   MTNKILIVEDDEKIATILAKYAQGSGYNHHIINDGAEVISWVKANEPDAILLDIMLPNVS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ KQI+E     E+PV+  TA   + D     + G + YI KP S    M  IK  +
Sbjct: 61  GTELCKQIRE---FSEVPVLMATAKVEEIDRLLGLEIGADDYICKPFSPKEVMARIKTIL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 230

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED      + R  +E  G++ +    G + L  A +   DVI++DI L  ++G E
Sbjct: 2   RVLVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLPGMNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++        P++ +TA   + D+      G + Y+ KP S  + +  ++  +  
Sbjct: 62  IVRALRAKQIW--TPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRR 118


>gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        R  +  +G+IA    +G+  L  A   + D+II+D+ L    G  
Sbjct: 2   RILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +   +  PV+ +TA    GD  +  + G + Y+ KP      +  ++  +  
Sbjct: 62  VLERLRRE---RSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117


>gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
          Length = 280

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 59  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 118

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 119 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 174


>gi|332519639|ref|ZP_08396103.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332044198|gb|EGI80392.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 234

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + RD +  + Y  +  +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGTVLRDYLMMNDYEVVHAKNGMEGFEKFKKDDFDLCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +   ++P+I +TA AMK D  +  K G + Y++KP    + +  IK  +  
Sbjct: 66  TLAKEIREKN--ADVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQR 123


>gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986]
 gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986]
          Length = 250

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D+   +   +  +   G+  +   +G EA++L  +HK D++I+DI +  + G+  
Sbjct: 24  ILVCDDDREIVDAIKIYLSGEGFEVIAAYDGEEAIKLMAKHKVDLLIIDIMMPVLDGIRA 83

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           T QI+E+S    IP+I ++A +   D+      G + Y++KP +    +  +K  +  
Sbjct: 84  TMQIRENS---TIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRR 138


>gi|282890431|ref|ZP_06298958.1| hypothetical protein pah_c017o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499685|gb|EFB41977.1| hypothetical protein pah_c017o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++++ED E    L +   E SGY  +   +G+       + KPD++I+DI +  +
Sbjct: 1   MQKPTLLLIEDEEDIAALIKLQAEISGYKIITEVDGLNGFRAIEREKPDLVILDIMIPGM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SGL++ ++IK  +EL+ IPVI ++A + + D     + G + Y++KP S  +    I+  
Sbjct: 61  SGLDVCRKIKSSAELKSIPVIMISAKSEELDVVLGLELGADDYVTKPFSPKVLFSRIRAV 120

Query: 120 IGE 122
           +  
Sbjct: 121 LRR 123


>gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 225

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED        +  +E SGY      +G E L LA++ + DVI++D+ L  I G  
Sbjct: 2   RILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGLILAKESEYDVIVLDVMLPSIDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++     Q  PV+ +TA     D  +  + G + Y+ KP +    +  ++     
Sbjct: 62  VLKTLRA---TQTTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARR 117


>gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 226

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED+E             GY+     +G E L  A     D +++D  L  + 
Sbjct: 1   MSRRLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + K ++      + PV+ +TA +   +  +  + G + Y+ KP S       I+  +
Sbjct: 61  GLAVIKSMRA--AGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|189426569|ref|YP_001953746.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Geobacter lovleyi SZ]
 gi|189422828|gb|ACD97226.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Geobacter lovleyi SZ]
          Length = 363

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+DN  N++L  + +    Y       G +ALE+AR    D+I++DI +  ++G +
Sbjct: 12  TVLLVDDNPENIRLLDEALRDE-YTIKVATRGEKALEIARSMPVDIILLDIMMPGMNGFD 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++K D   + IPVI V+A     DE      G   YI+KP+   +    ++ ++
Sbjct: 71  TCRRLKADPATRGIPVIFVSARGEVEDESVGFACGGVDYITKPVRFPVVRARLRTHL 127


>gi|167948903|ref|ZP_02535977.1| two-component system sensor protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 345

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 72/120 (60%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VEDN +NM + + +++ +G   +   +G EAL++  +   DV++MD Q+  + G E
Sbjct: 70  HVLVVEDNPVNMAVVKKMLQRAGLTPVTAMDGAEALKMVGEENFDVVLMDCQMPRMDGYE 129

Query: 64  ITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+   E + L  +P+IA+TA AM GD ER    G + Y++KP+  S     +++++
Sbjct: 130 STEAIRNREEMNGLSRLPIIAMTANAMAGDRERCLAAGMDDYLAKPVKPSALENMLRQWL 189


>gi|124008550|ref|ZP_01693242.1| transcriptional regulatory protein RprY [Microscilla marina ATCC
           23134]
 gi|123985924|gb|EAY25781.1| transcriptional regulatory protein RprY [Microscilla marina ATCC
           23134]
          Length = 230

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++ VED+     + +D +E   Y      NG  ALE  +Q   D+ + D+ L ++ 
Sbjct: 1   MKAHILFVEDDASLALVTKDSLELRDYRVTHCANGQLALEQFQQDNFDLCLFDVMLPQMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++++  +   EIP+I +TA AM+ D+    K G + YI+KP S+   +  I+ ++
Sbjct: 61  GFTLAEKVRTLNH--EIPIIFLTAKAMQEDKIAGLKLGADDYITKPFSIEEVVLKIEVFL 118

Query: 121 GEA 123
             +
Sbjct: 119 KRS 121


>gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
 gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED E        L+   G+      +G  AL    +   D++++D+ L  +SG
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGADIVLLDLMLPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ KQ++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  + 
Sbjct: 61  TDVCKQLRSRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I GL+
Sbjct: 2   RVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|46201757|ref|ZP_00054434.2| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum
           MS-1]
          Length = 514

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N ++   L+   G+      +G EA+E  R    D+++MD+Q+ E+ GL+
Sbjct: 267 RILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVRARPYDLVLMDVQMPEMDGLQ 326

Query: 64  ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T  I+  S     IP++A+TA AM+GD++     G ++YISKPI     M+ +  Y
Sbjct: 327 ATNAIRALSGPPSRIPIVAMTANAMRGDDKMCLDAGMDSYISKPIDRQKLMDVLAHY 383



 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 58/131 (44%), Gaps = 18/131 (13%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57
           ++V++V+D+ +N  +    +   G  A+   +   ALE  R     Q   +  I+D ++ 
Sbjct: 121 RRVLVVDDSPINRDVLERQLRGFGIHAVSCPDATSALEEIRRAAATQEPWEAAILDARMP 180

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIF 112
            ISG+++   I+ +  L  + ++  ++        +    G      +A+I KP+     
Sbjct: 181 GISGMDLAGLIRNEPALGGLKLVIASS--------QGLAAGDSPASADAFIHKPLRRQTI 232

Query: 113 METIKKYIGEA 123
           +  + + +G A
Sbjct: 233 LGILARVLGIA 243


>gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 974

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ EDN +N      L++  G +     NG EAL+       D+++MD+Q+ E+ G++
Sbjct: 718 RVLLAEDNLVNQHYASILLKRQGCLTTTAANGREALDKLAAEPFDLVLMDVQMPEMDGVK 777

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+ D      + +P++A+TA AM+GD ER  + G + Y+SKPI      + ++  +
Sbjct: 778 ATRIIRNDPAYAKVRNVPIVAMTAHAMQGDRERFLESGMDEYVSKPIDQDDLFKVMRAAL 837

Query: 121 GE 122
            +
Sbjct: 838 AK 839



 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED+         L+  SG       + +EAL LA ++ P V++ DI +  + G E+
Sbjct: 7   ILIVEDSPTQALRLEQLLLGSGLSVRVAASAVEALALADENPPAVVVSDILMPGMDGYEL 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY----- 119
            ++I+  ++L  IPVI +T  A   D  +  K G   +++KP    + +  +++      
Sbjct: 67  CRRIRASTKLAHIPVILLTTLADPEDILKGLKSGATNFVTKPYDPDLLLGRVRQLMSELD 126

Query: 120 IGEA 123
           +  A
Sbjct: 127 LRRA 130


>gi|322804938|emb|CBZ02497.1| putative two component response regulator transcriptional
           regulatory protein [Clostridium botulinum H04402 065]
          Length = 217

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV++VED     +L    +E +GY  ++  +G  A+        D+I++DI L ++ G
Sbjct: 1   MKKVLVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIENTYLDIILLDIMLPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I  +I      + IPVI VTA     D  +  K G + YI+KP      +  I+  + 
Sbjct: 61  FSIISKI----SGKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 236

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++VED +   +  +  ++  GY      NG E LE+A +    + ++DI +  + 
Sbjct: 1   MDHTILVVEDEKGIREAIQIYLKNQGYHVFLAENGQEGLEIANRETIHLAVVDIMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ +T +I++  +    P+I ++A +   D+      G + YI+KP      +  ++  +
Sbjct: 61  GITMTMEIRKKYDF---PIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 238

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D  +     ++ +E +G  A    +G+ AL+L R   PDV+++D+ L  + G+E+
Sbjct: 12  VLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLPGMDGVEV 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +Q++      +  V+ +TA A + D+      G + Y++KP S    +  I+  +  
Sbjct: 72  CRQLR---TFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRR 126


>gi|300864563|ref|ZP_07109425.1| hypothetical protein OSCI_960001 [Oscillatoria sp. PCC 6506]
 gi|300337436|emb|CBN54573.1| hypothetical protein OSCI_960001 [Oscillatoria sp. PCC 6506]
          Length = 391

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N K+   ++E  GY A    NG+EALE  +    D ++MD+Q+ E+ GLE
Sbjct: 136 RILLAEDNLVNQKVALRILERLGYRADVANNGLEALEALQHKTYDTVLMDVQMPEMDGLE 195

Query: 64  ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             + I +   +Q  P +IA+TA AM+GD E+  + G + YISKPI  +  ++ + +
Sbjct: 196 TARYINQHWPIQRRPRIIAMTANAMQGDREKCLEAGMDDYISKPIQFTELIQALSQ 251



 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLEI 64
           +IV+DN  N ++ R   +  G I+ +  NG EAL    +    D+ I+D+Q+ ++ GL +
Sbjct: 2   LIVDDNATNRQILRLQTQKWGMISQEAANGTEALNCLSQSELYDLAILDVQMPQMDGLTL 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA-YISKPISLSIFMETIKKYI 120
             +I++   ++ +P++ +T+            G   A  ++KPI  S   E +   +
Sbjct: 62  ASEIQKSDRIRRMPIVLLTS-------INCMVGSANAVCLTKPIKPSQLYEVLLSVL 111


>gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 231

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 2/116 (1%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           IV+D           +   GY      +G   L L R   PD +++D+ +  + GLE+ +
Sbjct: 5   IVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDVTMPVLGGLEVCR 64

Query: 67  QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++ +     +PV+ +TA     D       G + Y+ KP +L   +  ++  +  
Sbjct: 65  VLRAEGNT--VPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRR 118


>gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces
           bingchenggensis BCW-1]
          Length = 249

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+     L    +  SGY       G +AL    + +PD++++D+ L ++ G E
Sbjct: 12  RILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVMLPDLDGFE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +T+ ++        PV+ +TA    GD       G + Y+ KP S+   +  I+  +  
Sbjct: 72  VTRSLRAVGV--RTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRR 128


>gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
 gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
          Length = 235

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IVED++   +     +++ GY   Q  +G E LE+  +    + I+D+ +  + G
Sbjct: 3   MNHVLIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIEREDIHLAIVDVMMPRMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +  +++E  +    PVI ++A + + D+      G + Y++KP +    +  +   + 
Sbjct: 63  ITMVVRLREKHDF---PVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
 gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
          Length = 1771

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 66/108 (61%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++VEDNE+N ++  + +E  G       NG  ALE       D+++MD Q+  + G 
Sbjct: 1432 KRILLVEDNEMNQEVATEFLEQVGITLSIADNGQIALEKLATQTFDLVLMDCQMPVMDGY 1491

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110
            + T+ +++  EL ++PVIA+TA AM GD+E   + G   +I+KPI +S
Sbjct: 1492 QATQALRKIPELSDLPVIAMTANAMAGDKEMCLRVGMNDHIAKPIEVS 1539



 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ +DN     + R  +E+ G+     ++G +A+E  +  +  V ++D  + E++GLE
Sbjct: 1291 RILVADDNATARDILRTTLESMGFEVDTVKSGAQAVERCKTTQYPVALIDWLMPEMNGLE 1350

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +  I  +SE     ++ V+A A     + I   G   YI+KPIS S  ++ I   +G+
Sbjct: 1351 TSAAIIANSETPP-KILIVSAHANTELTDHIEGSGIAGYITKPISASRLLDGIMSSLGK 1408


>gi|254413082|ref|ZP_05026854.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180246|gb|EDX75238.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 435

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 59/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   +++L    +   GY    T NG  AL  A+   PD+I++DI++ +++G ++
Sbjct: 13  ILIVDDTADSLRLLEAALTRYGYEVRSTVNGSMALMAAKAVAPDLILLDIKMPDMNGYDV 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +K     ++IP+I ++A     D+ +    G   YI+KP      +  +   +
Sbjct: 73  CSALKASPVTRDIPIIFISALDEVFDKVKAFALGGADYITKPFQFEEVLARVDHQL 128


>gi|157803455|ref|YP_001492004.1| response regulator PleD [Rickettsia canadensis str. McKiel]
 gi|157784718|gb|ABV73219.1| response regulator PleD [Rickettsia canadensis str. McKiel]
          Length = 450

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 65/118 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E N+KL    +    Y  L   +G EAL +  + K D+I++D+ + E+ G
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILTKEKIDIILLDVMMSEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E+ K+IK + E   IPV+ VTA +   D  +  + G + +++KPI+ +     +K  
Sbjct: 61  FEVCKRIKTNLETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118



 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++++ D+ +  K  R ++           N  E L++  ++ PD++I+   L+    L
Sbjct: 152 KKILLINDDVVQAKNIRQMLLKITASIKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            I+  ++  +++  + +I            +  + G   Y   PI  S  +  I+  +  
Sbjct: 211 RISVILRRKAKISGVVIILQIDEDGMPLVVKGVELGINDYFVYPIEESELLARIRTQLRR 270


>gi|22023765|gb|AAM89215.1|AF462151_1 hybrid histidine kinase [Tritrichomonas foetus]
          Length = 1547

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +K+++VEDN+ N  + + +++  G       NG EA++   Q + D+I MD Q+  + G
Sbjct: 1425 TQKILVVEDNKTNQFVMKKILQNIGCPMRIAENGKEAIDALEQEEFDLIFMDCQMPVLDG 1484

Query: 62   LEITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +E TK I+  D     IP+IA+TA A++GDEE  RK G +AY+SKP+ +      I ++
Sbjct: 1485 IEATKIIRSCDKNYSSIPIIALTASAVEGDEETCRKAGMDAYLSKPVRIQQIKNIIAQF 1543


>gi|83716332|ref|YP_438576.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167576884|ref|ZP_02369758.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167615059|ref|ZP_02383694.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257141635|ref|ZP_05589897.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83650157|gb|ABC34221.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IVED        +  +  +G++   T++G+  L   +    D+ I+D+ L    G  
Sbjct: 2   KVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        PV+ +TA     D  +  + G + Y++KP   +  +  ++  +  
Sbjct: 62  VVRELR---RTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117


>gi|329939736|ref|ZP_08289037.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301306|gb|EGG45201.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 245

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED++  +      +   G++     +G  A++ A   +PD++I+DI L    GL
Sbjct: 19  RRVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 79  EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135


>gi|320353761|ref|YP_004195100.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320122263|gb|ADW17809.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 223

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED +    +  D +  +GY       G   +   R ++PD+I++D+ L    G
Sbjct: 1   MQRILVVEDEQRLASILADYLHAAGYSTHCLGEGRGVVAWVRGNRPDLILLDLMLPGRDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +EI K+I+       +P+I VTA   + D     + G + Y+ KP S    +  +K  + 
Sbjct: 61  MEICKEIR---TFSTVPIIMVTARIEEIDRLLGLELGADDYVCKPFSPREVVARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|312960750|ref|ZP_07775255.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas fluorescens WH6]
 gi|311284408|gb|EFQ62984.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 1   ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  K+++IVED+  +  +    +   G+      +G   L+L +  +PD+I++D+ L  +
Sbjct: 1   MSGKRILIVEDDADSANILEAYLRRDGFEVALAEDGQRGLDLHKSWRPDLILLDVMLPRL 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG E+   ++  S   + PVI VTA   + ++    + G + Y+ KP S    +  +   
Sbjct: 61  SGTEVLSAVRRSS---DTPVIMVTAMGDEPEKLGALRYGADDYVVKPYSPREVVARVHAV 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|312897331|ref|ZP_07756757.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310621549|gb|EFQ05083.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 224

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +        ++  SGY      +G++A+E A ++  D ++ DI +    G+ 
Sbjct: 2   RLLLAEDEKELSTAVATILNASGYETDIVSDGVQAVEAAERNSYDCMVFDIMMPGKDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +I+E  ++   PVI +TA +   D       G + Y++KP ++   +  I+     
Sbjct: 62  ALSEIREKGDV--TPVIMLTAKSEVDDRITGLDAGADDYLTKPFAVKELLARIRSVTRR 118


>gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 227

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IV+D +    L   ++  S        +G EA ++  +   D++++D+ +    G
Sbjct: 1   MTTVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVRENIDLVLLDVMMPHEDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+  S    +P+I +TA     D+ +    G + YI KP +    +  I   + 
Sbjct: 61  FVVCQSIRAMS---NVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|237718511|ref|ZP_04548992.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229452218|gb|EEO58009.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1333

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVED+E   +     +    +      NG EA+EL  +   ++++ DI + E+ G+ 
Sbjct: 1078 HVLIVEDDEEINEYLCREL-AEDFHLTSCGNGKEAIELLHKQSFNLVVSDIMMPEMDGIS 1136

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K IK+  +   IP+I +TA   + D       G +AYI+KP SL+I   TI   I
Sbjct: 1137 LCKHIKQHLQFNHIPIILLTAKTRETDNITGLAVGADAYITKPFSLNILRSTILSLI 1193


>gi|229104138|ref|ZP_04234811.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228679273|gb|EEL33477.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
          Length = 214

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED++   +L +  + T  Y  +   +G+E ++   +   D+I++D+ +  ++G E+ K 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I+  S    IP+I +TA   + D+ +    G + YI+KP S  + M  ++  +  +
Sbjct: 62  IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114


>gi|225388689|ref|ZP_03758413.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
           DSM 15981]
 gi|225045287|gb|EEG55533.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
           DSM 15981]
          Length = 219

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED E+   +    +  +GY      +G EA  L    + D+I++DI L    G E
Sbjct: 2   RILVVEDEEMIADIISAGLTRTGYQCESVYDGAEAAGLLEAKRYDLILLDIMLPGADGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + IK        PVI +TA     D+ R  K G + YI+KP  L+     ++  +  
Sbjct: 62  LMEYIKN----YNTPVIFITARTRLEDKVRGFKLGADDYITKPFELAELTARVEAVLRR 116


>gi|218963158|gb|ACL13308.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|218264787|ref|ZP_03478491.1| hypothetical protein PRABACTJOHN_04200 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221793|gb|EEC94443.1| hypothetical protein PRABACTJOHN_04200 [Parabacteroides johnsonii
           DSM 18315]
          Length = 548

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++++D++      + +     Y  L+ RNG + +++A + +PD+I+ D+ +    G 
Sbjct: 301 KKLLVIDDSDQIRWFLKHVFNKE-YQILEARNGQDGIDVALKEEPDLILCDVMMPVKDGY 359

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  ++IK D ++ + PV+ +TA     D     + G + YI+KP  + I    I   +
Sbjct: 360 ETCREIKSDPKMAQTPVVMLTAKVESEDVITGIEAGADDYITKPFDVEILRSKINSLM 417


>gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806]
 gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 218

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 60/119 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D+       +D +E +GY  +   NG+EAL L   + P +++ DI++  + G  +
Sbjct: 5   ILIADDDPGIRLAVKDYLELAGYSVVAASNGLEALNLLDTYHPHLLVSDIKMPRLDGYSL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++  E + +PVI +T      +  R  + GC+ Y+ KP  +      I+  +  +
Sbjct: 65  VTKVRQQPEFRLLPVIFLTERGSTEERIRGYQVGCDIYLPKPFEMEELKAVIRNLLERS 123


>gi|160882542|ref|ZP_02063545.1| hypothetical protein BACOVA_00493 [Bacteroides ovatus ATCC 8483]
 gi|156112123|gb|EDO13868.1| hypothetical protein BACOVA_00493 [Bacteroides ovatus ATCC 8483]
          Length = 1333

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V+IVED+E   +     +    +      NG EA+EL  +   ++++ DI + E+ G+ 
Sbjct: 1078 HVLIVEDDEEINEYLCREL-AEDFHLTSCGNGKEAIELLHKQSFNLVVSDIMMPEMDGIS 1136

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K IK+  +   IP+I +TA   + D       G +AYI+KP SL+I   TI   I
Sbjct: 1137 LCKHIKQHLQFNHIPIILLTAKTRETDNITGLAVGADAYITKPFSLNILRSTILSLI 1193


>gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 224

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED +      +  +E   Y      NG E L++A     D+I++D+ L +  GL 
Sbjct: 2   KVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVMLPKKDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E       PV+ +TA     D       G + Y++KP + +  +  ++  +  +
Sbjct: 62  VVRELRERKN--STPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRS 119


>gi|260063704|ref|YP_003196784.1| two-component system response regulator [Robiginitalea biformata
           HTCC2501]
 gi|88783149|gb|EAR14322.1| two-component system response regulator [Robiginitalea biformata
           HTCC2501]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++++ED           ++ SGY      +G + LE+ +    D++I+DI L  + 
Sbjct: 1   MGNRILLIEDEYAIASFVTQGLQESGYAVAVCYDGEKGLEMLQDGDFDLVILDIVLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ + I+   +  ++P++ +TA     +  R    G + Y+ KP         ++   
Sbjct: 61  GREVARTIR--GQGLDLPILMLTALGSTENVVRGLDSGADDYLVKPFKFKELEARVRALS 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|107023057|ref|YP_621384.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116686702|ref|YP_839949.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|170735469|ref|YP_001774583.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|105893246|gb|ABF76411.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116652417|gb|ABK13056.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
 gi|169821507|gb|ACA96088.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 225

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        +  +E SG+     ++G E L LA++ + DVI++D+ L  + G  
Sbjct: 2   RILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVMLPVLDGWA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++   +    PV+ +TA     D     + G + Y+ KP +    +  I+     
Sbjct: 62  VLKRLR---DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARR 117


>gi|325922833|ref|ZP_08184560.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546690|gb|EGD17817.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 238

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+IV+D     +     +   GY  LQ     E L +      +++++DI L +  G 
Sbjct: 11  ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLAVLAGQGAELVVLDIGLPDRDGH 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I++      +PVI +T  A + ++      G   Y++KP  +   M  I+  + +
Sbjct: 71  EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQ 127

Query: 123 A 123
           A
Sbjct: 128 A 128


>gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     KL R  + + GY   +  N   A+EL    KPD++++D+ L  +SG E
Sbjct: 7   RILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEKPDLVLLDLGLPGMSGHE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + ++ ++D    +IPV+ +++   +    +  + G + Y++KP  ++  +  I+  + 
Sbjct: 67  LLRKWRDDGL--DIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALR 122


>gi|312889259|ref|ZP_07748813.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298136|gb|EFQ75251.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 228

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++ ED+     + +  +E +GY      NG EAL   +    D+ ++D+ +  + 
Sbjct: 1   MNKHILLAEDDPDFGGILKQYLELAGYQVSWKMNGAEALTFFKTESADICVLDVMMPVMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I        IP I +TA   K D  +    G + Y+ KP  +   +  +K  +
Sbjct: 61  GFTLAEKI--TGIHPGIPFIFLTARNQKEDRLKGLGLGADDYVVKPFEVEELVLRLKNIL 118

Query: 121 GE 122
             
Sbjct: 119 KR 120


>gi|309792219|ref|ZP_07686691.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225760|gb|EFO79516.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 226

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ +D+  ++KL   ++E +GY  L+  +    L+   QH PD+I++D+ + + +G +I
Sbjct: 3   ILVADDDIPSVKLTSFVLEEAGYRVLKVYDAQSVLQAVDQHNPDLILLDVMMPKSNGFDI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +QI+ +S   ++P+I ++  +   D     + G + Y+ KP   S  +  ++  +  
Sbjct: 63  CRQIRRNS---DVPIIFLSGRSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRR 117


>gi|306841742|ref|ZP_07474428.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306288147|gb|EFM59534.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 461

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D + N+KL    + +  Y  +   +G EA+E+    + D++++D+ +  + 
Sbjct: 1   MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++K +     IPVI +T      D+ R  + G E ++SKP++    +  +K   
Sbjct: 61  GFEVCRRLKANPHTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120

Query: 121 G 121
            
Sbjct: 121 R 121



 Score = 86.3 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++V+++EL     R ++    Y      +   AL  A +   D II+         L
Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++  Q++     + IP+I +          R  + G   Y+ +P+        ++  I  
Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN +N ++   +++  G       NG EAL+L  +   D+++MD  +  + G E 
Sbjct: 664 ILVVEDNRVNQQVAVGMLKRFGCHVEVAANGQEALDLVARKSYDLVLMDCHMPRMDGYEA 723

Query: 65  TKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           T++I+     + ++P+IA+TA   +GD ++    G   Y+ KP+ L++  + ++ ++
Sbjct: 724 TRRIRSLEAGKVQVPIIAMTANVREGDSDKCLSVGMNDYLPKPLRLNLLRDKLQYWL 780



 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 59/117 (50%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V+IV+D+       R+++E  GY   +  NG +AL   R+  PD+++MD  +  + G +
Sbjct: 926  RVLIVDDDRAMRMALRNVLEEGGYRIEEAVNGEQALAFCRRQMPDLVLMDAVMPLLDGFK 985

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               QI++    +  PV+ +TA   +   E+    G   YI KP+   +  + + + +
Sbjct: 986  ACTQIRDMPGSRHTPVLIITALDDEHSIEQAFSAGATDYIPKPLHFGVLRQRVARLL 1042



 Score = 75.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           +++IV+D+ ++ +         G       NG +AL++ R         D+ ++D  +  
Sbjct: 519 RLLIVDDSTVSRRFLEQTFSFWGMYHGSAENGQQALKMLRSAAIQGRAYDLALIDENMPG 578

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + G+++  +I E  ++  + +I +     +   +     G   YI+KP+  S     I
Sbjct: 579 MEGVDLVHRIAESPQISSVKIILM-GRQHQPTVDVSHLPGVVNYIAKPVQQSPLYNAI 635


>gi|255008379|ref|ZP_05280505.1| putative two-component response regulator [Bacteroides fragilis
           3_1_12]
 gi|313146101|ref|ZP_07808294.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313134868|gb|EFR52228.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++       ++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-NISSYHLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  ++P+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MANILKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|229137795|ref|ZP_04266397.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
 gi|228645652|gb|EEL01884.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
          Length = 883

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 763 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 822

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 823 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881


>gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
 gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     +   G+  ++  +G E LE    H  D++I+D+ +  + G
Sbjct: 1   MQTILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLESHDADLLIIDVMMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +++E+S    IP+I ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 61  IRTTLKVRENS---SIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane
           protein; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1065

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62
           +V++V+D  +N ++ ++ +   G    +  NG++A+ L R +   +++++DI +  +SG 
Sbjct: 694 RVIVVDDEPINRQVLKNHLTLIGCEVREAANGVDAIRLVRDEGPFELMVLDIMMPGMSGY 753

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++   ++E   L ++P++ +TA     D     + G   Y++KP      +   K  I
Sbjct: 754 DVCTVLRESYSLYQLPILFLTAKNQIADIIAALEAGGNDYLAKPFDKRELISRAKNLI 811


>gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
 gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +      + +++ + Y      NG EA +       D +I+D+ + ++ G  
Sbjct: 2   RLLLAEDEKALSSALQVILKHNNYSVDAVYNGQEAYDYIMAGVYDGVILDVMMPKMDGFT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +I+  SE  ++PVI +TA +   D+      G + Y++KP      +  I+     
Sbjct: 62  VLSKIR--SEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRR 118


>gi|153003522|ref|YP_001377847.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027095|gb|ABS24863.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
          Length = 123

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   + + R ++    Y  +  ++G E +E A   +PD+I+MD+ +  + G 
Sbjct: 4   KKILLVDDSSTVLLMERMILSKYAYDVVTAKDGAEGVEKAIAERPDLILMDVVMPRMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++I+E  + +EIPVI VT        E     GC  Y++KPI+    +  ++  +G+
Sbjct: 64  EACRRIREQEDTREIPVIMVTTRGELASVESGYASGCNDYVTKPINGLELLAKVRSCLGQ 123


>gi|152995045|ref|YP_001339880.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835969|gb|ABR69945.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 244

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I ED     ++    +E SG   L   NG++ALEL  +HKPD++++D+Q+ ++ G 
Sbjct: 16  ATILIAEDELDIAEILIAYLEKSGMRTLHANNGLQALELHLEHKPDIVLLDVQMPKLDGW 75

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  +I+        P+I +TA     D+    + G + Y+ KP + +  +   +  +  
Sbjct: 76  RVLSEIRHRG---NTPIIMLTAMDQDIDKLMGLRIGADDYVVKPFNPAEVVARTQAVLRR 132


>gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 914

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 68/120 (56%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ ED+ LN ++ ++L+   G       NG EA+E+ARQ     ++MDIQ+  + G 
Sbjct: 560 ARVLVAEDHPLNREIAQELLTAVGIEVDMANNGREAVEMARQGAYQGVLMDIQMPVLDGY 619

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T  I+     +E+P+IA+TA A++ + ++  +     ++SKP+   +  +T+ +++  
Sbjct: 620 RATAAIRALPGGEELPIIAMTAHALEEERKKSLEAVMNDHVSKPVDAEVLYQTLARWLKR 679


>gi|255279926|ref|ZP_05344481.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255269699|gb|EET62904.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 236

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I+ED+    +  R L+E+  Y   +  NG + LE+      D++I+DI +  +SGL  
Sbjct: 6   VLIIEDDADIREGVRILLESENYCVREAENGRKGLEMLEDTT-DLVILDIMMPGMSGLRT 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+    +  +PV+ +TA A + D+      G + Y+ KP S +  +  +K  +  
Sbjct: 65  CEEIR---RVSNVPVLFLTAKAQESDKLIGLMAGGDDYLPKPFSYAELLGRVKALLRR 119


>gi|212695249|ref|ZP_03303377.1| hypothetical protein BACDOR_04789 [Bacteroides dorei DSM 17855]
 gi|237725832|ref|ZP_04556313.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|212662159|gb|EEB22733.1| hypothetical protein BACDOR_04789 [Bacteroides dorei DSM 17855]
 gi|229435640|gb|EEO45717.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1343

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2    LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
            +K   +++VEDNE       + +E   +      NG EAL++ R +  D++I DI +  +
Sbjct: 1077 MKGYTLLLVEDNESMRSFIFERLEVL-FTVETAVNGQEALDVLRSNHIDLVISDIMMPVM 1135

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +G E+ K+IK D +L  IPVI +TA      +    K G EAY+ KP S +     I   
Sbjct: 1136 NGYELCKEIKGDIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKSQILSL 1195

Query: 120  I 120
            +
Sbjct: 1196 L 1196


>gi|254458073|ref|ZP_05071500.1| response regulator CheB [Campylobacterales bacterium GD 1]
 gi|207085466|gb|EDZ62751.1| response regulator CheB [Campylobacterales bacterium GD 1]
          Length = 348

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+K+  ++++ + Y      NG +AL++ +    D+I++DI + +++G ++
Sbjct: 7   ILIVDDVSDNIKVAMNILKENNYNFSFAINGNQALDIVKTKDFDLILLDIMMPDLNGFDV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K +K +S  + IP+I +TA A         + G   YI+KP   S  +  +  ++
Sbjct: 67  IKALKNNSSTKNIPIIFLTAKADIDSITEGFELGAVDYITKPFHPSELISRVSTHL 122


>gi|171058978|ref|YP_001791327.1| response regulator receiver sensor signal transduction histidine
           kinase [Leptothrix cholodnii SP-6]
 gi|170776423|gb|ACB34562.1| response regulator receiver sensor signal transduction histidine
           kinase [Leptothrix cholodnii SP-6]
          Length = 394

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 64/122 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K V++++D+ +   + R+++E +G+  ++  +G   LE A+Q  PD+++ DI +  + 
Sbjct: 1   MNKTVLVIDDSSVLRDIMREVLEDAGFNVIEAPHGQLGLERAQQLAPDIVLCDINMPVLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G    +  +    L+ +P++ VTA A K    R  + G + ++SKP +    +  +   +
Sbjct: 61  GYGFVQAARAHEHLRTVPILMVTAMAEKKSMRRAMEAGADDFLSKPFTPEELVSAVTGQL 120

Query: 121 GE 122
             
Sbjct: 121 AR 122


>gi|167758971|ref|ZP_02431098.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
 gi|167663378|gb|EDS07508.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
          Length = 236

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 7/126 (5%)

Query: 1   MLKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M+      +++VED+     L    +E+  Y  +   NG +A+  A    PD+I+MD+ L
Sbjct: 1   MMTNGKPYILVVEDDAPVRNLITTTLESQNYKYMAAANGNQAVMSAASGSPDIILMDLGL 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            ++ G+++ K+I+  S     P+I ++A +   D+      G + Y++KP S+   +  +
Sbjct: 61  PDMDGVDVIKKIRTWSVA---PIIVISARSDDHDKVDALDAGADDYLTKPFSVEELLARL 117

Query: 117 KKYIGE 122
           +  +  
Sbjct: 118 RSTLRR 123


>gi|162456089|ref|YP_001618456.1| hypothetical protein sce7807 [Sorangium cellulosum 'So ce 56']
 gi|161166671|emb|CAN97976.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1444

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEIS 60
            + V++++D+  N+     L+E  G   +   N    +E+ R+     D+++MDI + E+ 
Sbjct: 1322 RSVLVIDDDARNVFAITSLLERRGAHVVLAENARHGIEILREADSPIDIVLMDIMMPELD 1381

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E T++I+ D    E+P+IAVTA AM  D ++    G   +++KP+     M  I  ++
Sbjct: 1382 GYEATREIRSDPRFNELPIIAVTAKAMPEDRQKCLDAGLNDFVAKPVDEGRLMSAILHWV 1441

Query: 121  G 121
             
Sbjct: 1442 R 1442


>gi|160886472|ref|ZP_02067475.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483]
 gi|156108357|gb|EDO10102.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483]
          Length = 1362

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              +++V+DN+  +   +D  ++  YI L   NG EALE+ ++ K D+I+ D+ +  I G+
Sbjct: 1112 ATILLVDDNKEMVDYLKDNFKSE-YITLIAGNGEEALEMMKEQKVDLILSDVMMPGIDGI 1170

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ + +K++ +   IPVI ++A      +    + G + YI KP S+++    I   +
Sbjct: 1171 KLCEIVKKNMQTCHIPVILLSAKGSLEAQTAGIQAGADDYIPKPFSINLLKGKINNIL 1228


>gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 223

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        R  +  + Y      NG + L LA     D++++D+ L E+ G E
Sbjct: 2   RILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     ++ PV+ +TA     D+    + G + Y+ KP + + F+  I+  +  A
Sbjct: 62  VLRRLRAQ---KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRA 118


>gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+M+ +D E    +   +I   GY      +G EAL +     PD++I+D+ + +++G +
Sbjct: 2   KIMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAENPDLVILDVMMPKLNGFD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q+++  +   +P+I ++A     D+    K G + Y+ KP S       I+  +  
Sbjct: 62  VCAQLRK--KGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALLRR 118


>gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 227

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED+    +L    +  +GY      NG + L +A ++  D++++D+ + E+S
Sbjct: 1   MAPTILIVEDDSKIARLLELELNHAGYATQVAFNGKDGL-VAAENDIDLVLLDVMMPELS 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++++   +   +PVI +TA     D+      G   Y++KP  +   +  I+  +
Sbjct: 60  GFEVLRRLR--GKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLL 117

Query: 121 G 121
            
Sbjct: 118 R 118


>gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
          Length = 242

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED           I   G+ A    +G  A++ A   +PD++IMDI L  + GL
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAATLRPDLVIMDIMLPVMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I  +   + +PV+ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 73  EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129


>gi|186685533|ref|YP_001868729.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467985|gb|ACC83786.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 937

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IV+D   N  +  +L+E  G+  ++  NG E LE   + +PD II D+ +  + G 
Sbjct: 723 KKILIVDDRWENRSVIVNLLEPLGFEVIEASNGQEGLEKITRDRPDTIICDLAMPVMDGW 782

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ KQ+++   L++  VI  +A   + D ++    G   +++KP+        + K +
Sbjct: 783 EMLKQLRQSETLRDAIVIVSSASVFENDRQKSLDAGGNDFLAKPVQADELYAVLAKQL 840


>gi|182418651|ref|ZP_02949928.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668000|ref|ZP_04527984.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377513|gb|EDT75067.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237656348|gb|EEP53904.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I +DN+   ++ R L+E+ G+   +  NG +A+     +  D+II+DI +   SG
Sbjct: 1   MRNILIADDNDEIREIVRILLESEGFNVSEAINGEDAVNKVNDNT-DLIILDIMMPIKSG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +   +I+E +     P++ +TA +   D+      G + ++SKP S +  +  +K  + 
Sbjct: 60  FKACIEIREKTSA---PILFLTAKSQDSDKCMAFSAGSDDFLSKPFSYTELISRVKALLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|162295949|gb|ABX83921.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + ++  G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|146297292|ref|YP_001181063.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410868|gb|ABP67872.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 234

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 2   LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           + +  V +V+D +  + +    + + GY      +    L+   +++PD++I+DI L +I
Sbjct: 1   MSRYLVYVVDDEKDILDIIYQYLISRGYEVKTFEDASSFLKEFEENEPDIVILDIMLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ K+I++ S    +P+I ++A   + D+    + G + YISKP SL      IKK 
Sbjct: 61  DGYELCKKIRKSS---NVPIIMLSAKGEEFDKVLGLELGSDDYISKPFSLLELEARIKKI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED     +  +  +   G++     NG++ L LA +   D+II+D  L  I GL 
Sbjct: 2   KLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGLA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +++    ++ PV+ +TA A   D  R  + G + Y+ KP + S  +  I   +  
Sbjct: 62  VLAALRQS---RQTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRR 117


>gi|13472444|ref|NP_104011.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14023190|dbj|BAB49797.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 238

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D++    L ++  +  G       +G E   + R+ + D+I++D+ L   SGL
Sbjct: 5   AHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRAQVDLIVLDVMLPGKSGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++        P+I +TA     D     + G + Y+ KP      +  I+  +  
Sbjct: 65  ELCRDLRAQ---YSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRR 121


>gi|329935641|ref|ZP_08285448.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
           M045]
 gi|329304902|gb|EGG48773.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
           M045]
          Length = 228

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 8   LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 67

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++++      ++P+I +TA     D     + G + Y+ KP+   +    I+  +  
Sbjct: 68  RRVR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121


>gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 808

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 3/116 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N K+ + ++   GY A    NG+E L    +   DVI+MDIQ+ E+ GL+
Sbjct: 674 RILVAEDNIINQKVIKKMLHKLGYRADVAANGLEVLVALDRQDYDVILMDIQMPEMDGLD 733

Query: 64  ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             ++I+E      +P +IA+TAFAM+GD+E+    G + YISKP++L      ++ 
Sbjct: 734 AARKIRETRPT--LPKIIAITAFAMEGDKEKCIDSGMDGYISKPVNLEELRAILRS 787


>gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 828

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 6/124 (4%)

Query: 2   LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHKPDVIIMDIQL 56
           +K    +++ EDN +N KL R ++  +GY  +   NG EALE  +A     D+I MD+Q+
Sbjct: 673 MKHSVCILLAEDNFVNQKLARMMLTKAGYRVVVANNGKEALEKYMASPDDFDLIFMDVQM 732

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            E+ GL  TK I+E      IP++A+TA AMKGD E+  + G + YI+KPI   +  E +
Sbjct: 733 PEMDGLIATKTIREKG-FDAIPIVAMTAHAMKGDREKCLEAGMDDYITKPIKREVVFEVL 791

Query: 117 KKYI 120
           +K++
Sbjct: 792 EKWV 795



 Score =  113 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 74/124 (59%), Gaps = 7/124 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
           +++++V+DN  N+++   ++E +G   +  +NG   + + R+     +  D+ I DIQ+ 
Sbjct: 524 RRILVVDDNLRNLEILTHILEFAGMAVVALKNGEAVVPILRKALAAGNPFDLCISDIQMP 583

Query: 58  EISGLEITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +SG E+ ++++ +   L+++P+IA+++F M+ +    ++ G + ++SKPI     ++ +
Sbjct: 584 VMSGYEVARRVRNEEVPLRDLPMIALSSF-MEREAGLCKEAGFDGFLSKPIHREKLLQMM 642

Query: 117 KKYI 120
            + I
Sbjct: 643 ARLI 646



 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 63/119 (52%), Gaps = 4/119 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+++   ++  +D++   G+  +   +G+ AL++     PDVI +D+ +  I G 
Sbjct: 6   KKILVVDNDRFILEFMKDVLSEKGHEVVTAEDGLSALDILETLAPDVIFVDLIMPNIGGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK-PIS--LSIFMETIKK 118
           E+   I+++  L+   +I ++A     D    RK G + +I K P+    +  +  +++
Sbjct: 66  ELCFLIRKNPALKNAFLIILSALG-HDDATDYRKLGADHFIVKGPLKEMAAEVLAALEQ 123


>gi|288962855|ref|YP_003453149.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288915121|dbj|BAI76605.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 253

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I ED    + +    +  SG   +   +G  ALEL R  +PD++++D+ +  + G ++
Sbjct: 26  ILIAEDEPEIVDILAVYLARSGLRTVHATDGRRALELHRSLRPDLVLLDVNMPHVDGWQV 85

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+    L   PVI +TA     D+    + G + YI KP + +     I+  +  
Sbjct: 86  LSEIR---HLGTTPVIMLTALDQDIDKLMGLRIGADDYIVKPFNPAEVAARIQAVLRR 140


>gi|283783078|ref|YP_003373832.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253498|ref|ZP_06977288.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283442136|gb|ADB14602.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532265|gb|EFH71153.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 250

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VED           I   G+ A    +G  A+  A Q KPD+IIMDI L  + G+
Sbjct: 12  RTILVVEDEPDLATAIAQRITAQGWRARVATDGASAVRAAEQLKPDLIIMDIMLPIMDGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E T++I        +P++ +TA   + D+      G + Y++KP S    +      +  
Sbjct: 72  EATRRI---ISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRR 128


>gi|255531222|ref|YP_003091594.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255344206|gb|ACU03532.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
            2366]
          Length = 1370

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVEDN+   +      E   +   Q  NG++ +ELA +  PD+II D+ + E+ G+ + 
Sbjct: 1120 LIVEDNQDVRQFIAAHFEAE-FEIHQAENGLKGMELATEIIPDIIISDVMMPEMDGITLC 1178

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +IK D+    +PVI +TA      +    + G + YI+KP +L++    +   +
Sbjct: 1179 SKIKSDTRTSHVPVILLTARTPLVYKIEGYETGADDYITKPFNLNMLEARVWNLL 1233


>gi|255282781|ref|ZP_05347336.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
 gi|255266802|gb|EET60007.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
          Length = 217

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E    L R  +  +GY      +G EA +   Q   D+I++DI L +++G
Sbjct: 1   MIKILIVEDEEAIANLIRMNLVKAGYQCELAFDGEEAADKIAQKSYDLILLDIMLPKLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+     E ++  +IPVI +TA      + +  + G E YI+KP  ++  +  ++  + 
Sbjct: 61  YEVL----EYAKSVDIPVIFLTAMGETQQKVKGLRLGAEDYIAKPFEIAELLARVETVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|218264515|ref|ZP_03478340.1| hypothetical protein PRABACTJOHN_04043 [Parabacteroides johnsonii DSM
            18315]
 gi|218221946|gb|EEC94596.1| hypothetical protein PRABACTJOHN_04043 [Parabacteroides johnsonii DSM
            18315]
          Length = 1323

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VEDNE  +++   L     Y  L  RNG E LE AR+ +PD+I+ D+ + E+SG 
Sbjct: 1065 RTILLVEDNEELLQILGSLFSPI-YRVLLARNGKEGLEKAREERPDIIVSDVMMPEMSGT 1123

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+  +IK D ++  IPV+ +TA           + G + YI+KP +  + +      + 
Sbjct: 1124 EMCLKIKNDFDVCHIPVVLLTALTSAEQNIEGLQRGADDYINKPFNAKVLLARCNNLVR 1182


>gi|199599197|ref|ZP_03212599.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507151|ref|YP_003169902.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538344|ref|YP_003172843.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199589878|gb|EDY97982.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147078|emb|CAR86051.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150020|emb|CAR88992.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648521|dbj|BAI40683.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 224

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED+     L   ++  +GY      N   A +L +  + D+++ DI + ++ G
Sbjct: 1   MVKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  ++++       IP++ +TA      +E+    G + Y+ KPI+ +  +  IK  + 
Sbjct: 61  YQFAQELRRTD--PSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|197118407|ref|YP_002138834.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087767|gb|ACH39038.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
          Length = 452

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 62/116 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    KL   L+   GY     RNG +ALE  R+ +PD++I DI + E+ G E+
Sbjct: 14  ILIVDDSPTQAKLLEQLLAGEGYRVAIARNGSDALEQIRERQPDLVISDILMPEMDGFEL 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++    +++ P++ +T      D     + G   ++SKP S  + +  I+  +
Sbjct: 74  CRRVRGMESIKDTPIVLLTHLNDPSDVLHSLEAGANYFVSKPYSDKLLLNRIRDVL 129


>gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 244

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+E   +L    ++  G I    R G E L  A +H  DV+++D+ L    GLE+
Sbjct: 18  VLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGLEV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++  S   ++P+I VTA   + D     + G + Y+ KP S    +  I+  +  A
Sbjct: 78  CRELRTRS---DVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRA 133


>gi|87198466|ref|YP_495723.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134147|gb|ABD24889.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 245

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +   D +   G++  Q     EA     +   D++++DI +    GL 
Sbjct: 7   RILLVDDEPALREPLADYLVRQGFVVTQAGTAAEARSRLLETGCDLVLLDIMMPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + +    E + +PVI +TA     D     + G + Y+ KP      +  I+  +  A
Sbjct: 67  LCRHL---VESKRLPVIFITAKGESTDRIVGLEIGADDYVVKPFDPRELVARIRSVLRRA 123


>gi|17231588|ref|NP_488136.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133231|dbj|BAB75795.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 356

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 58/117 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D   N  +   L++   Y       G +A+      +PDVI++D+ +  + G+E+
Sbjct: 7   ILVIDDEPDNFDVVETLLDGENYQLHYASGGQQAIARLSSFQPDVILLDVMMPHLDGIEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++IK D + Q +P+I VTA   K D       G + +ISKP++       +   + 
Sbjct: 67  CRRIKADPQWQAVPIIIVTALTAKEDLAHCLNAGADDFISKPLNSVELRARVNSMLR 123


>gi|281424136|ref|ZP_06255049.1| sensor histidine kinase/response regulator [Prevotella oris F0302]
 gi|281401793|gb|EFB32624.1| sensor histidine kinase/response regulator [Prevotella oris F0302]
          Length = 634

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +IV+D+E  ++   +++ +  +      +G EAL    +H+PDVI+ D+ + E+ G  + 
Sbjct: 390 LIVDDSEDFLEFMAEVL-SHKFHVRVAHDGKEALMRVEEHRPDVILSDVMMPEMDGNALC 448

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + +KE+    +IP I +TA   +       + G + YI+KP S+ +    I   I
Sbjct: 449 RALKENRNTCDIPFIMLTARVAEAHRMESLELGADDYITKPFSMDLLDLRISNLI 503


>gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 325

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D  +  +L    +   G+       G  AL +  + +PD +++DI L ++ GL 
Sbjct: 84  RVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIMLPDMDGLA 143

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++  S   +IPV+ +TA     D       G + Y++KP S+      ++  +  
Sbjct: 144 VLRGMR--SVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRR 200


>gi|270157584|ref|ZP_06186241.1| response regulator TutC [Legionella longbeachae D-4968]
 gi|289164037|ref|YP_003454175.1| sensor histidine kinase [Legionella longbeachae NSW150]
 gi|269989609|gb|EEZ95863.1| response regulator TutC [Legionella longbeachae D-4968]
 gi|288857210|emb|CBJ11031.1| putative sensor histidine kinase [Legionella longbeachae NSW150]
          Length = 806

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVEDN    +   +++    Y  +   +G E LE A +  P VII DI + +++G+E+
Sbjct: 458 VLIVEDNPAMNEFLCEILSKE-YRIICAHDGKEGLEKAIEFLPHVIISDIMMPDMNGIEM 516

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              I++ S L   P++ VTA A      RI + G + Y++KP S       I   +
Sbjct: 517 VHAIRKHSSLLSTPIMIVTAKADDDLRVRILQEGAQDYMTKPFSAQELKARIANLV 572


>gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED +    L +  +   G+      +G + L +A ++  DVI++D+ L  ++G  
Sbjct: 2   RVLLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVMLPRMNGYT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++++       P++ +TA     DE      G + ++SKP S  + +  ++  I  
Sbjct: 62  VCARLRDAENW--TPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRR 118


>gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
 gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
          Length = 243

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+   ++     +    +      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 77  CRRIREK---YSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131


>gi|242281256|ref|YP_002993385.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio salexigens DSM 2638]
 gi|242124150|gb|ACS81846.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio salexigens DSM 2638]
          Length = 352

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+D   N+ L   ++   G+  +   N + ALE   +   D+++ D+ +  ++G 
Sbjct: 5   RKILVVDDEPHNIMLLEGILTKLGHEVVGAENAVVALEKLDR-TYDLVLSDVMMPVMNGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++I+E++E Q+IPVI VT  + KGD  +  + G   +I+KPI +       +  + +
Sbjct: 64  EFVEKIRENTETQDIPVIMVTTLSQKGDRLKAVEIGANDFITKPIDIVELRVRTESMLRQ 123


>gi|330502123|ref|YP_004378992.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328916409|gb|AEB57240.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 244

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I ED      +    ++ SG       +G +AL + +  KPD++++D+Q+  + G ++
Sbjct: 18  VLIAEDEAEIADILIAYLQRSGLRTQHASDGQQALAMHQSLKPDLLLLDVQMPVLDGWKV 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+      + PVI +TA     D+    + G + Y+ KP + +  +  ++  +  
Sbjct: 78  LSEIRSRG---DTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRR 132


>gi|322383169|ref|ZP_08056991.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152712|gb|EFX45343.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           MI+ED+    ++ RD +E  G+      +G+E L  A   K D+I++D+ L  I G EI 
Sbjct: 1   MIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGIDGYEIC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+  +E   +P++ VTA     D+ R    G + YISKP S +  +  +K  + +
Sbjct: 61  RKIRGKTE---VPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQ 114


>gi|315921683|ref|ZP_07917923.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695558|gb|EFS32393.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 956

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++DN         L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 711 VLIIDDNADIRLYVHGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 769

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 770 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLVARVRNLI 825


>gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis
            NIES-39]
          Length = 1351

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 6/121 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED+ +N K+   +++  GY A    NG+E LE   +   DVI+MD+Q+  + GLE
Sbjct: 1090 RILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEALERQPYDVILMDMQMPIMDGLE 1149

Query: 64   ITKQIKEDSELQEIP------VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
              +QIK+  +  + P      +IAVTA AM+ D       G + YISKPI +   ++ + 
Sbjct: 1150 AARQIKKRYDSNDNPYSPRPRIIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVLS 1209

Query: 118  K 118
             
Sbjct: 1210 N 1210



 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 57/124 (45%), Gaps = 12/124 (9%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K+++I++ +  N ++    ++  G +   T +  EA+   +Q K  D+ I+++++  + G
Sbjct: 942  KRLLIIDSHPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQGKTFDIAIVEMEIANLDG 1001

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMK-----GDEERIRKGGCEAYISKPISLSIFMETI 116
                 Q+++ S   ++P++ + +   +        +        A+++KPI  S     +
Sbjct: 1002 FNFATQVRQTSAGVDLPLVMLISVGQQNFNPTDHRD------FVAFLNKPIKQSPLYNIL 1055

Query: 117  KKYI 120
               +
Sbjct: 1056 INVL 1059


>gi|264678608|ref|YP_003278515.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|299529834|ref|ZP_07043266.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
 gi|262209121|gb|ACY33219.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|298722137|gb|EFI63062.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
          Length = 230

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED           +   G+      NG++ L LA +   D+I++D  L  I GL 
Sbjct: 2   KILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGLA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +   +++    ++ PV+ +TA     D  +  + G + Y+ KP + S  +  +   +  +
Sbjct: 62  VLAALRQ---TKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRS 118


>gi|289209559|ref|YP_003461625.1| response regulator receiver protein [Thioalkalivibrio sp. K90mix]
 gi|288945190|gb|ADC72889.1| response regulator receiver protein [Thioalkalivibrio sp. K90mix]
          Length = 121

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+   + + R ++E  G+      +G E +  A+   PD+++MD+ +  ++G
Sbjct: 1   MARILIVDDSPTEIHVLRTMLEKHGHAVTTAESGEEGVAAAKAQVPDLVLMDVVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+++ +  E   +PV+ V+      D     + G   YI+KP++    ++TI KY+
Sbjct: 61  FQATRELSKSDETSHVPVVVVSTKDQATDRVWAMRQGARDYITKPVAEKDLLQTIGKYL 119


>gi|218887629|ref|YP_002436950.1| response regulator receiver protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758583|gb|ACL09482.1| response regulator receiver protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 121

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-IS 60
           +K+++I ED     +L +  +    Y  LQ  NGM+A+E+AR H+PD+I+MD+ +   I 
Sbjct: 1   MKRILIAEDQYEVRELVQATLRIGNYQILQAENGMQAVEMARLHRPDLILMDVMMPGEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE T++I+ D       +I +TA     D E   + G + Y  KP S    +  I++++
Sbjct: 61  GLEATRRIRSDPVTAGCRIIMLTAKGQTQDREEGLRAGADDYFPKPFSPLALIRKIEEFL 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 233

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59
           +  V+I++D++    L +  +E     A+    G E L L  +++    ++I+DI + +I
Sbjct: 1   MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+I+E      IPVI +TA   + D+    + G + Y++KP S++  M  +   
Sbjct: 61  DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 229

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D++   +L    I+  GY  +   NG EAL     +    ++I+DI + E+ G+
Sbjct: 2   KILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMDGI 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K++++DS+L   P++ ++A     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  EVIKEVRKDSQL---PILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRR 118

Query: 123 A 123
           +
Sbjct: 119 S 119


>gi|305667235|ref|YP_003863522.1| two-component system transcriptional regulator [Maribacter sp.
           HTCC2170]
 gi|88708169|gb|EAR00407.1| two-component system, transcriptional regulatory protein
           [Maribacter sp. HTCC2170]
          Length = 237

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  + +     +NGME  E  ++   DV I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGIVLKDYLSMNNFDVTLAKNGMEGFEKFKKDNYDVCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+E +E   +P++ +TA  MK D  +  K G + Y++KP    + +  +K  +  
Sbjct: 66  TLAREIREKNE--NVPIVFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLMKLKAILQR 123


>gi|294634068|ref|ZP_06712623.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292829882|gb|EFF88236.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 144

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           + V++V+D+  N+     ++E  G+  L   NG + +E    H    +++MD+ + E+ G
Sbjct: 24  RTVLVVDDDARNLFALSGILELYGFRVLHAENGRKGIETLLAHPEIALVLMDVMMPEMDG 83

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T +I++  +  E+P+IAVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 84  YTATAEIRKLPQYAELPIIAVTAKAMPGDREKSLSSGASDYVTKPVDTHDLIACVRRWL 142


>gi|158334093|ref|YP_001515265.1| response regulator receiver [Acaryochloris marina MBIC11017]
 gi|158304334|gb|ABW25951.1| response regulator receiver, putative [Acaryochloris marina
           MBIC11017]
          Length = 119

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 66/119 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V++V+D    ++L    +   GY  + T +  +AL  A   KPD+++ D+ +  +SG
Sbjct: 1   MRTVLVVDDGPAELELICSYLREGGYTVISTTDAKDALAKAESQKPDLVVTDVVMPGMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ + +K++   Q++PV+  T+     D+   +K G +AY++KP +    ++ ++  +
Sbjct: 61  FELCRSLKKNEATQQLPVVICTSKNQDLDKLWGKKQGADAYVTKPFTREDLLQAVQSVV 119


>gi|126660463|ref|ZP_01731572.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126618276|gb|EAZ89036.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 608

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++   ++   GY   +   G  AL++ +   PD+I++DI + +++G ++
Sbjct: 26  ILIVDDTIENLRVLSSILTAQGYNVRKATGGHMALKVVKTLPPDLIMLDIMMADLNGYDV 85

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +Q+K++    +IPVI ++A     D+ +  + G   YI KP  +   +  +K  +
Sbjct: 86  CEQLKQNPRTADIPVIFLSALDDVFDKVKAFEMGGVDYICKPFQMEEVLVRVKNQL 141


>gi|189424148|ref|YP_001951325.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189420407|gb|ACD94805.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 239

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+E  + L         +      +G E      ++  D+II+D+ L+   G
Sbjct: 1   MPQLLIVDDDEEILSLLTKFFSQHHHSVTVAVDGTEMFTALEKNSFDLIILDVMLKGEDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++++    + +IPVI +TA     D     + G + Y++KP +    +  +K  + 
Sbjct: 61  FSLCRRLR---MVSKIPVIILTAMGDLTDRIVGLEIGADDYLTKPFNARELLARVKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 909

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++VEDN+ N  +   ++ T G       NG  AL        D+++MD+Q+  + GL
Sbjct: 648 AHVLMVEDNDTNRLILEQILSTLGCTVRHANNGQAALAALEVEPFDLVLMDVQMPIMDGL 707

Query: 63  EITKQIKEDSELQEIP---VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T++I+E  + +  P   +IA+TA A+ GD E   + G + Y++KP+++    +  +++
Sbjct: 708 TATRRIREAEKERHQPRQLIIALTANALAGDREMCLQAGMDDYVTKPVTIGGLSKAFQRW 767

Query: 120 I 120
           +
Sbjct: 768 L 768


>gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 243

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-------HKPDVIIMDIQL 56
           ++++VED E         +   G+  ++  +G  A+E+             D++++D+ L
Sbjct: 9   RILLVEDEENFRDPLALGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 68

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             + G E+  +I+  S    +PVI +TA   + D+    + G + Y++KP S    +  +
Sbjct: 69  PRLDGTEVCTRIRRSS---SVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARL 125

Query: 117 KKYIGEA 123
           K  +  +
Sbjct: 126 KAVLRRS 132


>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1819

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 7/126 (5%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62
            V++ EDN  N +L    ++  GY A     G +ALE+  +H      I+MD Q+  + G 
Sbjct: 1543 VLLAEDNSANQRLATVQLKRLGYQADLVTTGEQALEMYMRHPERYLAILMDCQMPVMDGF 1602

Query: 63   EITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIK 117
            E T++I+E    +   IP+IA+TA AM+GD E   + G + YISKP+S+      +  ++
Sbjct: 1603 EATRRIREFEHTRQRHIPIIAMTANAMQGDREACIQAGMDDYISKPVSIQRLGEVLAAVE 1662

Query: 118  KYIGEA 123
            + +  +
Sbjct: 1663 RAVRPS 1668



 Score = 35.5 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 23/118 (19%)

Query: 11   NELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEITKQIK 69
            + +       ++              +A+E  R+    D+ I+DI L      ++ + + 
Sbjct: 1403 DPVEKHFLETMLSGWQMQVHSGCEVEDAVECLRKDAHFDLAILDISLPA----DLLRNLL 1458

Query: 70   EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY--------ISKPISLSIFMETIKKY 119
                 +      + A   + D+       C AY        I +P+  S+ MET++  
Sbjct: 1459 SHDISRAT---ILLANLNERDK-------CVAYEQLERVVTILRPVRQSVLMETMRSL 1506


>gi|313500967|gb|ADR62333.1| Response regulator receiver protein [Pseudomonas putida BIRD-1]
          Length = 121

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 67/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IV+D+   M    + +E  GY  L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARVLIVDDSPTEMYRLTEWLEKHGYQVLKASNGADGVALARQDKPDAVLMDIVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T+Q+ +D E   IPVI VT    + D     + G   +++KP+     +  +K+ +G
Sbjct: 61  FQATRQLSKDPETSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVEEEALIAKLKEVLG 120


>gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+I+ED +   +     ++  G+    + +G E L+LA +   D+I++D+ L  +SG+E
Sbjct: 3   RVLIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLMLPGLSGME 62

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+     +E P+I +TA     D+      G + Y+SKP ++   +  I+     
Sbjct: 63  VCRRIRA---AKETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRR 118


>gi|294810056|ref|ZP_06768728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|294442749|gb|EFG11544.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|295085462|emb|CBK66985.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1307

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VEDN   + L R+ + T  +  ++  NG EALE+  +   DVI+ D+ + E+ GLE
Sbjct: 1061 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSVDVIVSDVMMPEMDGLE 1119

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   +K D     IPVI +TA      +    + G + Y+ KP S+    + I+  +
Sbjct: 1120 LCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLL 1176


>gi|289555184|ref|ZP_06444394.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
 gi|289439816|gb|EFD22309.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
          Length = 263

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L +  +   G+      +G EA+    +  PDV+++DI L ++ GLE
Sbjct: 39  RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++E       P + +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 99  ILRRVRESDVY--TPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 156


>gi|237717363|ref|ZP_04547844.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262406129|ref|ZP_06082679.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294644026|ref|ZP_06721803.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|229443346|gb|EEO49137.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262357004|gb|EEZ06094.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|292640550|gb|EFF58791.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1326

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++VEDN   + L R+ + T  +  ++  NG EALE+  +   DVI+ D+ + E+ GLE
Sbjct: 1080 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSVDVIVSDVMMPEMDGLE 1138

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   +K D     IPVI +TA      +    + G + Y+ KP S+    + I+  +
Sbjct: 1139 LCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLL 1195


>gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
 gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
          Length = 227

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED E   ++ +  +E  GY +   + G EA+E       D+I++D+ L  IS
Sbjct: 1   MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++  + +  IP+I +TA     D+      G   YI+KP  +   +  I+  +
Sbjct: 61  GLEVLRRVRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1474

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE+ 
Sbjct: 1218 LLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLEML 1276

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + I++D ++  IPVI +TA   +G + +    G  AYI+KP S    +  I + + E
Sbjct: 1277 QSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLSE 1333


>gi|206975598|ref|ZP_03236510.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
 gi|206746060|gb|EDZ57455.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
          Length = 896

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|217958585|ref|YP_002337133.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
 gi|217065019|gb|ACJ79269.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
          Length = 896

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
 gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
          Length = 239

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|71909457|ref|YP_287044.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849078|gb|AAZ48574.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 860

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETS-GYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++VED+ LN ++   L+E   G       +  +A+   +    D+I+MD+ +  + G
Sbjct: 736 AHILLVEDDPLNREVAAILVEEMTGVPVDLADSAEQAIAKVQATAYDLILMDLLMPGMDG 795

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE T++I+        P+IA+TA A   D ER    G   ++ KP+        ++ ++
Sbjct: 796 LEATRRIRALPGYATTPIIALTANAFAEDRERCLAAGMNDHLGKPVVPERLQAVLEHWL 854


>gi|51893537|ref|YP_076228.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857226|dbj|BAD41384.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 123

 Score =  147 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M  +++++ED+    ++ +  ++   G+       G E +  A Q +PD+I++D+ + E+
Sbjct: 1   MALRILLIEDDPDIQRMVQLSLKFQGGHEVSVASGGQEGIAKAEQERPDLILLDVMMPEM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E  +++K +     IP++ ++A A + + E+ R  G   Y+ KP       + ++  
Sbjct: 61  DGYETCRRLKANPATASIPIVFLSARAQQSEIEKGRSLGAIGYLVKPFDPMTLSDQLEAM 120

Query: 120 IG 121
           + 
Sbjct: 121 LR 122


>gi|307329202|ref|ZP_07608367.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306885101|gb|EFN16122.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1851

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            KV+IV+D+  N+     ++E  G   L   NG E +E+  QH    +++MDI + E+ G 
Sbjct: 1731 KVLIVDDDIRNVFALTSVLEQHGLQVLYAENGREGIEVLEQHDDVVLVLMDIMMPEMDGY 1790

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T  I+   +   +P+IA+TA AMKGD E+  + G   Y++KP+     +  ++ ++
Sbjct: 1791 ATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIEAGASDYVTKPVDTDHLLTVMEHWM 1848


>gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 229

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K++IV+D++  ++L    +E  GY   +  NG EAL       PD  ++I+D+ + ++ G
Sbjct: 2   KILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKL-NMNPDIALMILDVMMPQMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++++S+   IPV+ ++A     D+ +    G + Y++KP +    M  +K  + 
Sbjct: 61  MEVIREVRKESQ---IPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980]
 gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980]
          Length = 229

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K++I +D++  ++L    +   GY A++  +G EAL   R     D++I+DI + E+ G+
Sbjct: 2   KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDGM 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+++++S+   IP+I +TA     D+ +    G + Y++KP +    M  +K  +  
Sbjct: 62  QVVKELRKESQ---IPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRR 118


>gi|229171692|ref|ZP_04299267.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
 gi|228611838|gb|EEK69085.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
          Length = 231

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++V+D      L    ++   Y   +     EALE   + + D+ I+DI L + S
Sbjct: 1   MSDKVLVVDDEREIADLVELYLKNENYTVFKYYTAKEALECIDKTELDIAILDIMLPDAS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I ++I++       P+I +TA   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLTICQKIRDKHTY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 240

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED           I   G+ A    +G  A++ A Q +PD++IMDI L  + GL
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I  +   + +PV+ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 73  EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129


>gi|254444190|ref|ZP_05057666.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258498|gb|EDY82806.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 664

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 73/124 (58%), Gaps = 4/124 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+ +N +L   L+   GY   Q  +G+EA+E   ++  D+I++D  +  + G E
Sbjct: 536 KILLVEDHAVNRRLAVKLMSKLGYECDQAVDGLEAMECCIENDYDLILLDCCMPRMDGYE 595

Query: 64  ITKQIKEDSELQE----IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             ++ ++   +++      +IA+TA A++GD ER  + G + Y++KP+  +I  + I+  
Sbjct: 596 FVREFRKLEGVRKLERPTRIIALTANALQGDRERCLEAGMDDYLTKPLKKAILGDAIRDA 655

Query: 120 IGEA 123
           + ++
Sbjct: 656 LADS 659


>gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 223

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ED+       +  +  SGY     R G + L +A ++  D++++D+ L  I G E
Sbjct: 2   TILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     +++PVI +TA     D  R  + G + Y+ KP S +  +  I+  +  
Sbjct: 62  IMRALRTR---RDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRR 117


>gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED+          +E  GY   Q ++G E L LAR++  D++I+D+ L +++GL 
Sbjct: 2   RLLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGLFLAREYPVDLVIVDLGLPKLNGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I +++++  E + IP++ +TA     D+    + G + Y+ KP         +K  +  +
Sbjct: 62  IVQRLRQ--EGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRRS 119


>gi|86608396|ref|YP_477158.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556938|gb|ABD01895.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 341

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 61/115 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D   +     +L+ ++ +   +  NG EALE   + +PD++++D+ +  +SG +
Sbjct: 22  HVLVVDDQASSRLYIGELLRSAHFRVSEATNGEEALEAVERLRPDLVLLDVLMPNMSGFD 81

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + +Q+K +   + IPV+ +TA   + +     + G +  ++KP      +  ++ 
Sbjct: 82  VCRQLKANELTRLIPVVLITALTDRSNRLMGMQVGADDILTKPFDHVELLARVRS 136


>gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 250

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           + ++V+D     ++    +E   +  +   NG++A+ +AR   PDV+I+DI L  I GLE
Sbjct: 18  RALVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGLPSIDGLE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++      +  ++ +TA   + D       G + YI+KP S    +  I+  +  
Sbjct: 78  VCRQLR---TFSDAYIVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRR 133


>gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 246

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +++++VED+   +      +   G+      +G  A++ A   +PD++++D+ L    GL
Sbjct: 20  RRILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEAWQPDLLVLDVMLPGFDGL 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 80  EVCRRVQAR---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 136


>gi|260584330|ref|ZP_05852077.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
           700633]
 gi|260157848|gb|EEW92917.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
           700633]
          Length = 232

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      +    +  +GY      +G+E LEL +    D+II DI + ++ 
Sbjct: 1   MEKTILLVDDEFEITDIQNRYLAQAGYTVFVAHDGVEGLELFKNKSIDLIITDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++       + P + +TA   + D+      G + +I+KP S    +  +    
Sbjct: 61  GYDFISEV--QYLSPDQPFLFITAKTSEQDKIFGLSMGADDFITKPFSPRELVLRVNNIF 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|222094734|ref|YP_002528794.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221238792|gb|ACM11502.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 896

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|148380236|ref|YP_001254777.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932234|ref|YP_001384540.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936748|ref|YP_001388056.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289720|emb|CAL83825.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928278|gb|ABS33778.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932662|gb|ABS38161.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 235

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+     + ++ +   GY   Q  +G+EA+E  +     ++IMDI +  + G+E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQGENYHMVIMDIMMPVMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+E S+   +P+I ++A     D+      G + YI KP S+   +  +K  I  A
Sbjct: 65  SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121


>gi|21223649|ref|NP_629428.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785237|ref|ZP_05523668.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769129|ref|ZP_06528507.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|9909919|emb|CAC04498.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699328|gb|EFD66757.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 244

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED++  +      +   G++     +G  A++ A   +PD++I+DI L    GL
Sbjct: 18  RRVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 77

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 78  EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 134


>gi|320105200|ref|YP_004180791.1| response regulator receiver protein [Isosphaera pallida ATCC 43644]
 gi|319752482|gb|ADV64242.1| response regulator receiver protein [Isosphaera pallida ATCC 43644]
          Length = 348

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 66/116 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D++   KL    ++  GY  L+  +G+ AL++    KPD+I++DI +  + G +
Sbjct: 226 TILVVDDSQTVRKLVSITLKGRGYDVLEANDGIAALDVISNRKPDLILLDITMPRLDGYK 285

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + K IK   E + IPVI ++      D+ R +  GC +YI+KP      ++ ++++
Sbjct: 286 LCKIIKGHDETRHIPVIMLSGKDGFFDKARGKFVGCTSYITKPFEPGALIQEVERH 341


>gi|289663864|ref|ZP_06485445.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 769

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N+ + + L+   G+ A    +G  AL      + D+I MD Q+  + G  
Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALSRMESTRYDMIFMDCQMPVLDGYA 557

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+  +    +S  + +P++A+TA AM GD ER    G + Y+SKP++       +++++
Sbjct: 558 ATRHWRALETESGGRPVPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617

Query: 121 GE 122
             
Sbjct: 618 PR 619


>gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 235

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D      L +  ++  G+      NG +AL LA  +KPD  I+D+ +  + G  
Sbjct: 10  KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++      + P + +TA     D       G + Y++KP SL   +  ++  +  
Sbjct: 70  LLNKLRA--AGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126


>gi|228906741|ref|ZP_04070613.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
 gi|228852918|gb|EEM97700.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
          Length = 896

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ +E      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHATIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
          Length = 223

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D      L R  +E  GY  L   +G EAL+   +  P+V+I+D+ L +  G E
Sbjct: 2   KILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWDEE-PNVLILDVMLPDTDGYE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +  +E    ++IPV+ +TA +   D+    + G + Y++KP + +  +  +K     
Sbjct: 61  LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117


>gi|229131904|ref|ZP_04260769.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
 gi|228651495|gb|EEL07465.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
          Length = 896

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ +E      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 242

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED           I   G+ A    +G  A++ A   +PD++IMDI L  + GL
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATTLRPDLVIMDIMLPVMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I  +   + +PV+ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 73  EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129


>gi|224538239|ref|ZP_03678778.1| hypothetical protein BACCELL_03130 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520171|gb|EEF89276.1| hypothetical protein BACCELL_03130 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1490

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN       R +  +  Y  ++  +GM+    A +  PD+II D+ +    G+ +T
Sbjct: 1223 LLVEDNSELRLFLRSIFASE-YRIVEAVDGMQGWSKALKFLPDIIISDVMMPGKDGITMT 1281

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP++ +TA      +    + G + YI+KP S +     +K  +
Sbjct: 1282 RELRADMTTSHIPIVLLTAKTSIESKLEGLEYGADDYITKPFSATYLKARVKNLL 1336


>gi|114777683|ref|ZP_01452643.1| probable sensor/response regulator hybrid protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114551899|gb|EAU54433.1| probable sensor/response regulator hybrid protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 1043

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 70/117 (59%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDNE+N ++   L+  +G       NG EA+E       D ++MD+Q+  + GLE
Sbjct: 712 RLLLAEDNEVNREVAEGLLTRAGISLQVVHNGQEAIEALEHDDFDGVLMDLQMPVMGGLE 771

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ ++++   +E+P+IA+TA AM  D ER  + G   +I+KPI  +   +T+ ++I
Sbjct: 772 ATRVLRKNPRFRELPIIAMTANAMADDRERCLQAGMNDHIAKPIHPATLYDTLLRWI 828



 Score = 42.0 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 17  LFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGLEITKQI------ 68
           +   + E  G+       G +AL   +Q   KPD+ ++D +L +++     +++      
Sbjct: 575 IMSHMAEELGFNTQLFPTGSDALTALQQAPDKPDLFLVDWKLSDMNSETAIRRMHQLVSA 634

Query: 69  ----KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               K       +P+I +       + +     G +  + KP++ S   E  K+ +
Sbjct: 635 AHADKRIKVDAHVPLILMQPIGRDAEVQY---QGIDVRLFKPVTGSDLCEAAKQAL 687


>gi|70732535|ref|YP_262298.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346834|gb|AAY94440.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 224

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED           +  SGY+     NG + L L RQH  D++I+DI L  I G  
Sbjct: 2   RILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVILDINLPHIDGWG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  QI++DS  +   V+ +TA     D+ R    G + Y+ KP      +  ++  +  +
Sbjct: 62  VLGQIRQDSSTR---VMMLTAQGRLADKIRGLDLGADDYLVKPFQFPELLARVRTLMRRS 118


>gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family
           protein [Actinomyces oris K20]
 gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
 gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
          Length = 249

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D      L    +  +G+      +G  AL+   +  PD++++D+ L ++ G 
Sbjct: 15  AHLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGF 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E       P++ +TA     D+ +    G + Y++KP  L   +  I+  +  
Sbjct: 75  TVARRLRERDVT--TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRR 132


>gi|298489232|ref|ZP_07007250.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156251|gb|EFH97353.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 224

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +     +  SGYI      G++ L LA+    DV+I+D+ L E+ G E
Sbjct: 2   RILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++    +   V+ +TA     ++ +  + G + Y+ KP      +  ++  +  +
Sbjct: 62  VLSRLRKTVSTR---VMMLTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRS 118


>gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 226

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED        R  +  +GY+     +G+     A     D++I+D+ L    G  
Sbjct: 2   RILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++     +  PV+ +TA    GD  R  + G + Y++KP      +  ++  +  
Sbjct: 62  LLQNLR---RTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRR 117


>gi|257866993|ref|ZP_05646646.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257873327|ref|ZP_05652980.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC10]
 gi|257801049|gb|EEV29979.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257807491|gb|EEV36313.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC10]
          Length = 228

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ VED     +    L++   Y      +G   L+ A     D++++DI L +I G+ 
Sbjct: 2   RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K +++ +     P+I +TA +   D+      G + Y++KP  +   +  I+     
Sbjct: 62  LLKTLRKQNI--RTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRR 118


>gi|291612955|ref|YP_003523112.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291583067|gb|ADE10725.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 242

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             +++IV+D+E    L  D +   G++    ++G    ++      D+I++D+ L    G
Sbjct: 7   SPRILIVDDDEDIRNLLADYLGEQGWLISTAQDGTAMQQVLDSTPIDLIVLDLTLPGSDG 66

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + + ++  S    IPVI +TA +   D     + G + Y+ KP      +  I+  + 
Sbjct: 67  LTLCRDLRARSA---IPVIMLTARSAPLDRILGLEMGADDYLCKPFEPRELLVRIRNVLR 123

Query: 122 EA 123
            +
Sbjct: 124 RS 125


>gi|239995114|ref|ZP_04715638.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 490

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 7/122 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60
           +KV+IVEDN++N  + +  +  + +  L  ++G+EALE   + K   DV++MD Q+ E+ 
Sbjct: 358 RKVLIVEDNDINQVIVKQHL--NNHTTLSAKSGLEALEALNKMKVTFDVVLMDCQMPEMD 415

Query: 61  GLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           G E TK+I+          +P+IA+TA AMKGD+ER    G + Y+SKP      ++ ++
Sbjct: 416 GFEATKRIRNGEAGERYLNVPIIALTANAMKGDKERCVNAGMDDYLSKPFDAIDLIDKVE 475

Query: 118 KY 119
            +
Sbjct: 476 HW 477


>gi|228984189|ref|ZP_04144371.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775476|gb|EEM23860.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 883

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 763 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 822

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 823 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881


>gi|229165941|ref|ZP_04293706.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
 gi|228617494|gb|EEK74554.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
          Length = 883

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ +E      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 763 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKNNTNIDLILMDIMMPNMDG 822

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +    EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 823 YETMEHIRMNLGFHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881


>gi|166030722|ref|ZP_02233551.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC
           27755]
 gi|166029514|gb|EDR48271.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC
           27755]
          Length = 220

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D    +++   ++   G++  +  N ++ L +   H+ D+I++DI +  + G
Sbjct: 1   MAKILAVDDEPAILEMIESILNKDGHLVTKVSNPLK-LNMEELHRYDLILLDIMMPGMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+    L + P++ +TA   +         G + YISKP  +      I  ++ 
Sbjct: 60  FELCKRIRA---LVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|149372308|ref|ZP_01891496.1| two-component system, transcriptional regulatory protein
           [unidentified eubacterium SCB49]
 gi|149354698|gb|EDM43261.1| two-component system, transcriptional regulatory protein
           [unidentified eubacterium SCB49]
          Length = 238

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  + Y     +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGTVLKDYLAMNDYNVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +   E+P+I +TA AMK D  +  K G + Y++KP    + +  IK  I  
Sbjct: 66  TLAKEIREKN--AEVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQR 123


>gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1002

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D+    +L R  +E  GY   + ++GM+A+   +   PD+I++D+ + +I+G 
Sbjct: 801 KTILVVDDDANIRELLRQQLENEGYNVREAKDGMDAIHQIKISSPDLIVLDVMMPQINGF 860

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++   +K D    +IP+I ++   +  ++ER    G + Y++KPI+    +  I   + +
Sbjct: 861 DVAAVLKNDPLTADIPIIILS---IVENKERGHHIGIDRYLTKPINTEELLNEIGSLLSQ 917



 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMD-IQLQEIS 60
             KKV++V+ N   +K   D+++T GY  ++  +  E +  A   KPD+II+D I  QE  
Sbjct: 921  SKKVLVVDQNASTLKTISDVLQTQGYNVIEASDPQECIRKALSAKPDMIIIDSIFSQEAD 980

Query: 61   GLEITKQIKEDSELQEIPVIAVT 83
               + K +K + EL+ +  I ++
Sbjct: 981  ---LVKTLKFEKELENVFFIMLS 1000


>gi|149365314|ref|ZP_01887349.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|167469861|ref|ZP_02334565.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis FV-1]
 gi|218929914|ref|YP_002347789.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis CO92]
 gi|115348525|emb|CAL21464.1| two-component system response regulator [Yersinia pestis CO92]
 gi|149291727|gb|EDM41801.1| two-component system response regulator [Yersinia pestis CA88-4125]
          Length = 239

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED     +L  D ++ +GY      NG E +   RQ  P +I++D+ L    G+ +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+      +IP++ VTA   + D     + G + YI KP S    +  +K  +  
Sbjct: 74  CREIR---RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128


>gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
 gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
          Length = 235

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED     ++    +   G+      NG+      R H PDVI++D+ L  + G+ 
Sbjct: 6   RILIVEDEPKLAQVLMVYLRAEGFATTHVDNGLAVEAAVRAHAPDVILLDLMLPGLDGIS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++        P+I +TA   + D     + G + Y+ KP +    +  +K  +  A
Sbjct: 66  VCRQLRA---FCHAPLIMLTARVDELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRA 122


>gi|299149366|ref|ZP_07042423.1| putative DNA-binding response regulator/sensor histidine kinase
           [Bacteroides sp. 3_1_23]
 gi|298512553|gb|EFI36445.1| putative DNA-binding response regulator/sensor histidine kinase
           [Bacteroides sp. 3_1_23]
          Length = 956

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++DN         L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 711 VLIIDDNADIRLYVHGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 769

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 770 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLVARVRNLI 825


>gi|294494981|ref|YP_003541474.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
 gi|292665980|gb|ADE35829.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
          Length = 121

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/119 (39%), Positives = 82/119 (68%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VEDN +NM+L  DL+E+ GY  +Q  +G +AL++  ++  D+I++D+QL ++ G
Sbjct: 1   MATILVVEDNPMNMELTVDLLESYGYEVMQAEDGSQALDVVEKNTFDLILLDMQLPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           LE+ ++ KE    ++ PV+A+TA AM+GD+++    GC  YISKPI +  F +TI  Y+
Sbjct: 61  LEVLEKFKEIENSKDTPVVALTAHAMRGDDKKFINAGCAGYISKPIDIHEFQQTISSYV 119


>gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 823

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VEDN +N ++ + ++E+ G       +G+ A+   RQ++ D++ MD Q+  + GL
Sbjct: 563 RQVLLVEDNPVNQEVGKGMLESLGCRVKVVEDGLAAVNEVRQNRYDLVFMDCQMPVMDGL 622

Query: 63  EITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E T++I+   E     +PVIA+TA+AMKGD     + G + Y+SKP +     + +++ +
Sbjct: 623 EATRRIRAREEGTGNRVPVIALTAYAMKGDRLACLEAGADEYLSKPFTRDQIAKIMQRQL 682



 Score = 66.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 37/87 (42%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++  D+E   +   + + + G       +   AL        D+ ++D ++    G+
Sbjct: 425 KRVLLATDDEETREGVSEQLFSWGVDLECAGDAPAALCRLVTAPFDLALLDHRIAGTDGI 484

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKG 89
           E+   I+     + + ++ +T  A + 
Sbjct: 485 ELAAAIRTVPAGRSVRLLLLTESAEEA 511


>gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
 gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
          Length = 237

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D +    L    +   GY       G +A  L  + + D+ ++DI L ++ G E
Sbjct: 5   RILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIMLPDVDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+ +   +  PVI +TA   + D+      G + Y+ KP      +   K  +  
Sbjct: 65  LLRTIRTE---RTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRR 120


>gi|254436165|ref|ZP_05049672.1| hypothetical protein NOC27_3228 [Nitrosococcus oceani AFC27]
 gi|207089276|gb|EDZ66548.1| hypothetical protein NOC27_3228 [Nitrosococcus oceani AFC27]
          Length = 158

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 65/119 (54%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D+      FR ++E  G+      NG+E L  A+  KPD+I+MD+ + +++G
Sbjct: 38  MTHILVVDDSSTESHAFRIMLEKKGFTVSFANNGLEGLTKAKALKPDLILMDVVMPQVNG 97

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+++K D E   IPVI ++A   + D     + G + Y+SKP+S       I   I
Sbjct: 98  FQATRKLKRDPETAGIPVIIISAKNQETDRVWGLRQGAKGYLSKPVSKEELFNKINMLI 156


>gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
 gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++ +VED++   K    L+ + G+         EAL     +K D+ ++DI L + +G
Sbjct: 1   MKRIFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISLPDGNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  +IKE    Q++PVI +TA + +         G + YI+KP      +  I+  + 
Sbjct: 61  FTVCTEIKE---TQDLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTALR 117

Query: 122 EA 123
           ++
Sbjct: 118 KS 119


>gi|147678593|ref|YP_001212808.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274690|dbj|BAF60439.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 453

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 2/120 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+ KV++V+D E   ++ +D++E  G+  +   NG EALE      PD +++DI++ EI 
Sbjct: 1   MMSKVLVVDDEESVRQMLKDVLEDDGHQVMLAENGREALEKITVRHPDAVLLDIRMPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL +   ++ +     +P+I +TAF +     +  + G   YI KP ++   + T+KK +
Sbjct: 61  GLAVLDIVRREGST--VPIILMTAFGITDMAIQAIQTGAYDYIIKPFNIDELLLTVKKAV 118


>gi|313905194|ref|ZP_07838562.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469947|gb|EFR65281.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 221

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED +   +    ++E  GY      +G EALE   +   DV+I+DI + ++ GLE
Sbjct: 2   KILLAEDTKDMNRALTAVLEHEGYEVASAFDGAEALEYIDRDSYDVMILDIMMPKVDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++ +    +   PV+ +TA A   D+      G + Y++KP S+   +  I+  +  +
Sbjct: 62  VIREARNRKIV--TPVLLLTAKAEIDDKVAGLDAGADDYLTKPFSIKELLARIRAMVRRS 119


>gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
 gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
          Length = 228

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E         ++  GY      +G   L+ A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEENLANFVNLELKHEGYETDVELDGRAGLDAALSQDFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E   L++ P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVARRVRE---LKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|307725772|ref|YP_003908985.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307586297|gb|ADN59694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 1198

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + +++ ED+  N+     +IE  G      RNG EALE        D+I+MDI + E+ G
Sbjct: 1077 RTILLAEDDVRNIFALSHVIEPLGAKLQIARNGREALEALENGPEVDLILMDIMMPEMDG 1136

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            L    +I+ +     +P+IA+TA AM  D  R  + G + Y+SKPI +   +   + ++ 
Sbjct: 1137 LTAMGEIRRNPRFAHLPIIALTAKAMANDRLRCLEAGADDYVSKPIDVDKLVALCRVWLR 1196

Query: 122  E 122
            +
Sbjct: 1197 Q 1197



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    ++ RDL+    +  +   N    L L R  +P  +++D+ L + SGL +
Sbjct: 811 IVAVEDDLAFAEILRDLVHELDFDFVHASNAASGLALVRDMRPAAVLLDVGLPDRSGLTV 870

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            + +K D   + IP+  V+A       ++    G   Y  KP + S     I++ 
Sbjct: 871 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 922



 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 47/94 (50%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V+++ED+    +  R L+++     +      EALE   +   D ++ D+ L + +G 
Sbjct: 931  KRVLVIEDDTPMRESIRALLQSENTEIVAVATLSEALEHLGKLSFDCVVTDLALPDGTGY 990

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            ++ +++  + E   +PVI  T   +  +EE   +
Sbjct: 991  DLLERLAGNPEHAALPVIVYTGRMLSDEEEHRLR 1024


>gi|288959550|ref|YP_003449891.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911858|dbj|BAI73347.1| two-component response regulator [Azospirillum sp. B510]
          Length = 283

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ LN  L   ++  +G+ A    NG+EA+  A+    D+I+MD+ + E+ GL 
Sbjct: 20  RILVVEDSPLNQMLVTAILAQAGHRAETANNGLEAVMAAQAGGYDLILMDLSMPEMDGLT 79

Query: 64  ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T+ +++       +PV+A+TA   + D  R +  G   +++KP+  +  +ET++K++  
Sbjct: 80  ATRLLRDLPGPAGRVPVVAMTADTDEADRVRCQDAGMNDHVAKPVDRAQLLETVEKWLRA 139

Query: 123 A 123
           +
Sbjct: 140 S 140


>gi|256840897|ref|ZP_05546405.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738169|gb|EEU51495.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 374

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 64/114 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D   N+ L + +++  GY  L   +G +AL +A +  P++I++DI + E+ G E
Sbjct: 9   KVLIVDDVPTNVMLVQAILKKEGYTLLTCDSGTKALRIANEKHPNLILLDIMMPEMDGYE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + + +K + E  +IPVI ++A +      +  + G   Y++KP      ++ + 
Sbjct: 69  VLQHLKSNPETTDIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122


>gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 231

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+++ED+    +     +    +    T  G E ++  R  +PD++++D+ L  ++G
Sbjct: 1   MSRVLLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLMLPGMTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ + I+   +   +P+I  TA   + D     + G + Y+ KP+   +    I+  + 
Sbjct: 61  LEVCRGIRAVDQT--LPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 225

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++++D    +++ +  +E  GY  +Q  +G+EALE   +  PD++I+D+ L +IS
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKESKFNPDLLILDLMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+ +SE   +P+I +TA + +         G + YI+KP S    +  +   +
Sbjct: 61  GENVCERIRRESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|169824596|ref|YP_001692207.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380339|ref|ZP_07268809.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303235188|ref|ZP_07321807.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|167831401|dbj|BAG08317.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311829|gb|EFK93840.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493675|gb|EFL53462.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 229

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +M+V+D +  +K     ++T  Y  L+  NG +ALEL  ++K D+ ++DI ++ + G
Sbjct: 1   MYNIMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGFDALELMEKNKIDLFLVDIMMEGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+T++I+E   +   P+I ++A +   D+      G + YI+KP      +  IK  + 
Sbjct: 61  LELTQKIRE---VSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 226

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 2   KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    P I +TA     D  +  + G   Y+ KP S +  +  ++  + +
Sbjct: 62  VLRALRTAHQS---PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117


>gi|160897316|ref|YP_001562898.1| response regulator receiver protein [Delftia acidovorans SPH-1]
 gi|160362900|gb|ABX34513.1| response regulator receiver protein [Delftia acidovorans SPH-1]
          Length = 123

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-IS 60
           +KK++I ED     KL R  +E+S Y  ++   G EA  LA++ +PDV+++D+ +   + 
Sbjct: 1   MKKILIAEDQADIRKLLRMTLESSAYEVMEAPTGDEAWALAQRSQPDVVLLDMMMPGTLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           GLE+  +IK   +L+   VI +TA     D E     G + Y+ KP S +  +ET+   
Sbjct: 61  GLEVCCRIKTSYDLRHTRVILLTARGSAQDREAGFNAGADEYLLKPFSPNRLLETLASL 119


>gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 228

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E         ++  GY      +G   LE A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E   +++ P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVARRVRE---IKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332829408|gb|EGK02062.1| hypothetical protein HMPREF9455_00184 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 225

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++VED      + +D +E   +      NG E LE+  +  PD+I+ DI + ++ 
Sbjct: 1   MKIKVLLVEDEPALAMIIKDALEKREFTVDCAANGNEGLEMFHKLHPDIIVADIMMPKLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  +T+ I++    + IP++ ++A +   D  +  + G   Y+ KP  +   +  IK  +
Sbjct: 61  GFSMTQLIRQTD--KHIPILFLSAKSKTDDVVQGFEIGGNDYLKKPFGMEELIVRIKSLL 118

Query: 121 GE 122
             
Sbjct: 119 NR 120


>gi|300813426|ref|ZP_07093772.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512463|gb|EFK39617.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 229

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++VED E   K  +  +E  GY   +  +G E +++AR  +P ++++DI L  + 
Sbjct: 1   MAVKILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           G  + K +++  E   + +I +TA A   D+    + G + Y++KP + +     IK 
Sbjct: 61  GFAVCKVLRK--EFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKS 116


>gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
 gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
          Length = 241

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED           + + G+    T +G  A+ +A  +KPD+I+MDI L  + GLE 
Sbjct: 14  VLVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIAASYKPDLILMDIMLPVMDGLEA 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           TK+I   +  + +PV+ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 74  TKRI---TAARPVPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRR 128


>gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 950

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VEDN+   +L +  +E   +      NG+E L+    + PD+++ D  + E+ GLE
Sbjct: 692 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 750

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I++D ++  IPVI +TA   +  + +    G  AYI+KP S    +  I + + E
Sbjct: 751 MLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 809


>gi|288925412|ref|ZP_06419346.1| putative response regulator receiver domain protein [Prevotella
            buccae D17]
 gi|288337883|gb|EFC76235.1| putative response regulator receiver domain protein [Prevotella
            buccae D17]
          Length = 1298

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++D    ++L    +  + +  ++  +G + LE A +  PD+I+ D+ +  + G+E
Sbjct: 1055 TILVIDDEHDTVELLERNL-AADFKVIKAYDGRQGLEEAARTLPDIIVCDLMMPNMDGME 1113

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
                +K D +L  I VI  TA   + D       G +AY++KPISL +  + I + + ++
Sbjct: 1114 FLHTLKSDKKLAHIKVIIFTAKTSEEDMIEAFDQGADAYLTKPISLRLLRKRIDRLVAQS 1173


>gi|239907737|ref|YP_002954478.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239797603|dbj|BAH76592.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 305

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D   N+ +  + + +  Y      +G +AL L  +  PD+I++DI + ++ G 
Sbjct: 8   ATILIVDDAPSNLAVLTEALRSE-YEVRIASSGSQALRLVEESAPDLILLDILMPDMDGY 66

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++ K  +  + IP+I +TA     DE      G   YI KP+S+ I    ++ ++
Sbjct: 67  EVCRRFKARAATRNIPIIFLTAKGDVADETLGLALGAVDYIVKPVSVPIVQARVRTHV 124


>gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
 gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
          Length = 224

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++I+ED E         ++  GY      +G + L+ A +   D+I++D+ L  ++G
Sbjct: 1   MQQILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLDAALEKNYDLILLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++     +  P+I +TA     D       G + Y+ KP ++   +  ++    
Sbjct: 61  LEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 65/116 (56%), Gaps = 2/116 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++ED+   ++  +  +   GY      +G   L+LAR  +PD++++D+ L  + 
Sbjct: 1   MAERILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMG 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           GLE+ ++I+++    E+P++ ++A   + D+    + G + Y+ KP  L   +  I
Sbjct: 61  GLEVIREIRKED--PELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARI 114


>gi|172065207|ref|YP_001815919.1| two component AraC family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171997449|gb|ACB68366.1| two component transcriptional regulator, AraC family [Burkholderia
           ambifaria MC40-6]
          Length = 277

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D   +++L  +++ ++        +G++A   A+   PD+I+MD+++  + G 
Sbjct: 20  AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRMDGF 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              + +      Q IPVI +TA A   D     + G   YI KP      +  I+ ++  
Sbjct: 80  AACRLLASTPSTQNIPVIILTAAADLDDRIAGLETGALDYIVKPFEPVEVIARIRNHLKR 139

Query: 123 A 123
           A
Sbjct: 140 A 140


>gi|114800094|ref|YP_760221.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
 gi|114740268|gb|ABI78393.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
          Length = 944

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 68/119 (57%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISG 61
           ++++V+DNE+N ++  +L+  +G       NG  A  +  ++      ++MD+Q+ E+ G
Sbjct: 602 RILVVDDNEINREIAAELLRDAGLETDCAENGRIACGMMIENGDNYACVLMDVQMPEMDG 661

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +  T+ I+E      +P+IA+TA A + +++R    G   +I+KP+  +  +E + +++
Sbjct: 662 IAATRAIRESWPAARLPIIAMTAHAYEEEKQRCFDAGMNDHIAKPVDPTELIEKLNRWL 720



 Score =  104 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59
           V+  +DN    ++  ++  +         +G EAL             D++++D ++  +
Sbjct: 448 VLAADDNPAARQIIHEIFASWDMAVDLVASGEEALSALDSANKKGTPYDLVLLDWKMPGM 507

Query: 60  SGLEITKQIKEDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            G++  + ++     +++P+ + VTA+      +  R     A++ KP+   +  +TI
Sbjct: 508 DGMDTARAMRSAGNQEKMPITLMVTAYCADEFMQEARAADISAFLQKPVDPRMLRDTI 565


>gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 228

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D     +     +   G+  +   +G  A+       PDV+++D+ L    GL
Sbjct: 4   RRVLVVDDEATIREAVAARLRAEGFDVVTASDGPSAVAECEASSPDVLVLDVMLPGYDGL 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA A + D       G + Y+SKP S+ + +  +   +  
Sbjct: 64  EVCRRVQAS---RPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRR 120

Query: 123 A 123
           A
Sbjct: 121 A 121


>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 992

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N ++   L+   G+      +G EA+E  R    D+++MD+Q+ E+ GL+
Sbjct: 745 RILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVRSRPYDLVLMDVQMPEMDGLQ 804

Query: 64  ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T  I+  +     +P++A+TA AM+GD+      G + YISKPI     ME + +Y
Sbjct: 805 ATAAIRALTGGAERVPIVAMTANAMRGDDRMCLDAGMDRYISKPIDRRKLMEVLAQY 861



 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQ 57
           +++++V+D+ +N  +    +   G I     +   AL       A     +  I+D ++ 
Sbjct: 599 RRILVVDDSPINRDVLERQLRGFGVIVASCADAESALAELGRAAATGTPWEAAIIDARMP 658

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGG---CEAYISKPISLSIFM 113
            ++G ++  +I+ +  L  + +I  ++      D       G    +A+I KP+     +
Sbjct: 659 GVTGSDLIGRIRAEPVLAPMGLIIASSQGLSPED-------GSPKADAFIHKPLRRQTIL 711

Query: 114 ETIKKYIG 121
             + + +G
Sbjct: 712 AVLARVLG 719


>gi|226947054|ref|YP_002802127.1| response regulator with metal dependent phosphohydrolase activity
           (two-component) [Azotobacter vinelandii DJ]
 gi|226721981|gb|ACO81152.1| response regulator with metal dependent phosphohydrolase activity
           (two-component) [Azotobacter vinelandii DJ]
          Length = 347

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEI 59
           M   +++V+D   N+ +F +++    +      NG  AL +AR  + PD+I++D+ +  +
Sbjct: 1   MKATILVVDDVPENIDIFVEILAPH-HRTKVALNGERALRIARSDNPPDLILLDVMMPGL 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG ++ +++K D + + IPVI VTA +   DE+R  + G   YI+KPIS  I +  ++ +
Sbjct: 60  SGYQVCERLKADPDTRAIPVIFVTAMSETADEQRGLELGAVDYITKPISPPIALARVRTH 119

Query: 120 I 120
           +
Sbjct: 120 L 120


>gi|320581795|gb|EFW96014.1| Histidine kinase osmosensor [Pichia angusta DL-1]
          Length = 1043

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 7/126 (5%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++ EDN +N KL   ++E  G+      NG EA+E  +++  DVI+MD+Q+  + G
Sbjct: 857 SYKILLAEDNLVNQKLAVKILENHGHSVEVVENGQEAVEAVKKNHYDVILMDVQMPIMGG 916

Query: 62  LEITKQIKEDSELQ-------EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            E T +I+E  + +         P++A+TA AM GD ER  K   + Y+SKP+  S+ ++
Sbjct: 917 FEATAKIREWEKKKYVDSMAFRTPIVALTAHAMLGDRERCLKAQMDEYLSKPLKPSLLLQ 976

Query: 115 TIKKYI 120
           TI K I
Sbjct: 977 TISKCI 982


>gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 263

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   +      +   G++    ++G  A+E A   +PD++++D+ L    GL
Sbjct: 37  RRVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGL 96

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 97  EVCRRVQAH---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 153


>gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D      L    +  +G+  +   +G  A   A++ +PD+I++D+ L ++ G 
Sbjct: 8   AKLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVMLPDMDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T+++++       PV+ +TA     D+ +    G + Y++KP  L   +  I+  +  
Sbjct: 68  TVTRRLRDAGIT--TPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 125


>gi|311070491|ref|YP_003975414.1| two-component response regulator YxdK [Bacillus atrophaeus 1942]
 gi|310871008|gb|ADP34483.1| two-component response regulator (YxdK) [Bacillus atrophaeus 1942]
          Length = 229

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKVMIVED++    L ++ +E  GY  + T +    L+L  + KPDV+++DI L    G
Sbjct: 1   MKKVMIVEDSKDIRSLLQNYLEKYGYQTVVTSDFTSVLDLFLREKPDVVLLDINLPSYDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               +QI++ S     P+I ++A + + D+    + G + YI KP S  I +  IK  I 
Sbjct: 61  YYWCRQIRQHSTS---PIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|302544744|ref|ZP_07297086.1| DNA-binding response regulator MtrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462362|gb|EFL25455.1| DNA-binding response regulator MtrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 225

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED++         +   G+       G + L+L R+ +PD+I++D+ L  I G E+ 
Sbjct: 5   LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA     D     + G + Y+ KP+   +    I+  +  
Sbjct: 65  RRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118


>gi|294667725|ref|ZP_06732937.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602565|gb|EFF46004.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 769

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N+ + + L+   G+ A    +G  AL      + D++ MD Q+  + G  
Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARMESTRYDMVFMDCQMPVLDGYA 557

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++ +    +S  + +P++A+TA AM GD ER    G + Y+SKP++       +++++
Sbjct: 558 ATRRWRAMETESGGRPVPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617

Query: 121 GE 122
             
Sbjct: 618 PR 619


>gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621]
 gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621]
          Length = 242

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+   ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 16  ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A ++  D+      G + YI KP S   F+  +K  +  
Sbjct: 76  CRRIREK---HSLPIMFLSAKSLDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130


>gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+E   +   + +    Y      +G    EL      D++++D+ L ++ GL 
Sbjct: 2   KLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGLA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +Q++      +IPV+ +TA     ++      G + Y+ KP  L      I+  +  
Sbjct: 62  FCRQMRAQGL--DIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRR 118


>gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737759|emb|CAL60804.1| Heavy metal response transcriptional activator protein
           [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED           +  SG+     RNG + L +A     D+I++D+ L  +SG E
Sbjct: 2   RILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +   ++  ++ Q IPVI +TA     D  +  + G + Y+ KP +    +  I+  +  +
Sbjct: 62  LLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRRS 121


>gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 229

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K+++V+D++   +L    I+  GY  +   NG EAL       PD  ++I+DI + E+SG
Sbjct: 2   KILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHT-TPDIALMILDIMMPEMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K++++DS+   IP++ ++A     D+ +    G + Y++KP +    M  +K  + 
Sbjct: 61  IEVVKEVRKDSQ---IPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 223

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED+    +   + ++ +GY+  Q  +G E   L      D +I+DI L E+ G+ 
Sbjct: 2   RILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++ + D +   +PV+ +TA     D+      G + Y++KP  +   +  I+  I  A
Sbjct: 62  VLEKWRADGKT--MPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRA 119


>gi|21241265|ref|NP_640847.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106582|gb|AAM35383.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 769

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N+ + + L+   G+ A    +G  AL      + D++ MD Q+  + G  
Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARMESTRYDMVFMDCQMPVLDGYA 557

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++ +    +S  + +P++A+TA AM GD ER    G + Y+SKP++       +++++
Sbjct: 558 ATRRWRAMETESGGRPVPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617

Query: 121 GE 122
             
Sbjct: 618 PR 619


>gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 215

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 64/118 (54%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++++D+   + L +D +E  GY  +   +G EAL++  Q  PD+II D+ + E+ G 
Sbjct: 10  QKLLLIDDDPNLILLVKDYLEFRGYEVMTAEHGKEALDILEQDIPDMIICDVMMPEMDGY 69

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++++DS    IPV+ ++A     D  +    G + Y+ KP      +  ++  +
Sbjct: 70  TLVEKVRDDSRTSCIPVLFLSAKGQSQDRIKGLNKGADIYMVKPFEPEELVAQVESCL 127


>gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206]
 gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206]
          Length = 260

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia
           coli WV_060327]
          Length = 260

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|320160595|ref|YP_004173819.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
 gi|319994448|dbj|BAJ63219.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
          Length = 123

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/118 (42%), Positives = 73/118 (61%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++ VEDN  N  L R L+   GY  ++  N   A+E+ +  KP +I+MDI + ++ G 
Sbjct: 5   KHILYVEDNPDNRMLVRRLLTAFGYEVIEAENATRAMEILKTTKPVLILMDINMPDVDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +T +IK D EL  IPVIA+TA  MKGD ER    GC+ YI KPI +  F+E I++++
Sbjct: 65  TLTNRIKSDPELFNIPVIALTANVMKGDRERTLDAGCDGYIEKPIDVDRFIEQIERFL 122


>gi|294631359|ref|ZP_06709919.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
 gi|292834692|gb|EFF93041.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
          Length = 245

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED++  +      +   G++     +G  A++ A   +PD++I+DI L    GL
Sbjct: 19  RRVLVVEDDQTILDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLPGFDGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 79  EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135


>gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 229

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED E      +  ++ + +  ++   G + L+ A +   D+ ++D+ L  I G
Sbjct: 1   MRRILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++  ++++     ++ +I +TA     D+    + G + YI KP +    +  IK  + 
Sbjct: 61  FKVCDELRK--RYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
 gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
          Length = 224

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I+ED E         ++  GYI     +G + LE A ++  D+I++D+ L  ++G
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++     +  P+I +TA     D       G + Y+ KP ++   +  ++    
Sbjct: 61  LEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 228

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IVED +   +     ++  GY      NG E LE A +   D+I++D+ L E+ 
Sbjct: 1   MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++ +   +   ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|170760105|ref|YP_001787670.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407094|gb|ACA55505.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 235

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+     + ++ +   GY   Q  +G+EA+E  +     ++IMDI +  + G+E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+E S+   +P+I ++A     D+      G + YI KP S+   +  +K  I  A
Sbjct: 65  SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121


>gi|115377385|ref|ZP_01464590.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|310824780|ref|YP_003957138.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365596|gb|EAU64626.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397852|gb|ADO75311.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 968

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ VEDN  N  + R  +  + Y  L+  +G   LE  ++  PD+++MD+ L  + G E
Sbjct: 847 RILYVEDNPQNRDIVRRYLGGT-YELLEAEDGEHGLERVQRETPDLVLMDLSLPRVDGWE 905

Query: 64  ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            T++++     + ++PVIAVTA A +  +++    GC+AY++KP+     ++TI+K++G+
Sbjct: 906 ATRRLRALPAAISKVPVIAVTAHAGREYQDKAMAAGCDAYLTKPLDREQLLDTIRKHLGK 965



 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++V+D+ L  +L    +E +G+  +   +G+ AL LAR+ KP  II+DI L  + G  
Sbjct: 597 TVLVVDDDPLMQQLVAGQLEPAGFKVVAAEDGVNALRLAREVKPQAIILDIHLPRLDGWS 656

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  Q+K +  L  IPVI V+   ++    R    G   Y+ KP+     +E + + +G A
Sbjct: 657 VLSQLKSEPTLSGIPVILVS---VEEQRARGYSLGACEYLVKPVEPDHLVEVVTRTLGTA 713



 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+    +L    +  +G+   +  +G +AL  AR   P ++++D+ +  + G E+
Sbjct: 720 VLVVDDDASTRELVSRSLRRAGFSTSEAHSGEDALLKARVSPPVLVVLDLMMPNLDGFEV 779

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            ++++ D     +PV+ +T   +   E+   + G  A++ K
Sbjct: 780 LRRLRSDKL--NMPVVVLTGKTLSAQEQATLRDGFIAFVRK 818


>gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1002

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++V+D+    +L R  +E  GY   + ++GM+A+   +   PD+I++D+ + +I+G 
Sbjct: 801 KTILVVDDDANIRELLRQQLENEGYNVREAKDGMDAIHQIKISSPDLIVLDVMMPQINGF 860

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++   +K D    +IP+I ++   +  ++ER    G + Y++KPI+    +  I   + +
Sbjct: 861 DVAAVLKNDPLTADIPIIILS---IVENKERGHHIGIDRYLTKPINTEELLNEIGSLLSQ 917



 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMD-IQLQEIS 60
             KKV++V+ N   +K   D+++T GY  ++  +  E +  A   KPD+II+D I  QE  
Sbjct: 921  SKKVLVVDQNASTLKTISDVLQTQGYNVIEASDRQECIHKALSAKPDMIIIDSIFSQEAD 980

Query: 61   GLEITKQIKEDSELQEIPVIAVT 83
               + K +K + EL+ +  I ++
Sbjct: 981  ---LVKTLKFEKELENVFFIMLS 1000


>gi|332880362|ref|ZP_08448040.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681807|gb|EGJ54726.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1209

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             V++ EDNE      +DL+    +  L   +G E L +AR++ PD+II D+ +  + G  
Sbjct: 1097 TVLVAEDNEQFRTFMKDLLGQD-FTVLTAADGQEGLAMAREYGPDLIISDVMMPHMDGYA 1155

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
              + +K+D +   IP I +TA           + G +++I+KP  + +    I+
Sbjct: 1156 FCRAVKDDVQCCHIPFILLTAKNSSESRSGAYEAGADSFIAKPFDIDVLHSRIR 1209


>gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20]
          Length = 238

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-------HKPDVIIMDIQL 56
           ++++VED E         +   G+  ++  +G  A+E+             D++++D+ L
Sbjct: 6   RILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 65

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             + G E+  +I+  S    +PVI +TA   + D+    + G + Y++KP S    +  +
Sbjct: 66  PRLDGTEVCTRIRRSS---SVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARL 122

Query: 117 KKYIGEA 123
           K  +  +
Sbjct: 123 KAVLRRS 129


>gi|317481176|ref|ZP_07940251.1| two component regulator propeller [Bacteroides sp. 4_1_36]
 gi|316902672|gb|EFV24551.1| two component regulator propeller [Bacteroides sp. 4_1_36]
          Length = 1351

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN        +      +      NG    E A +  PD+I+ DI +  + G E+ 
Sbjct: 1096 LVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKEIPDIIVSDIMMPVMDGNEMC 1154

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K+D     IP+I +TA     D+E   + G ++Y++KP S S+    I+  +
Sbjct: 1155 RELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLL 1209


>gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
 gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
          Length = 231

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED      +    +    Y      +G EALE    +  D+I++D+ L +I G+E
Sbjct: 2   KLLLVEDETALRNIIAKGLRRCNYSVDLAADGEEALEFYEVYDYDLIVLDLNLPKIDGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++ ++   EI ++ ++A     D  +    G   Y+ KP   +     I+  +  +
Sbjct: 62  VLRRVRSNNN--EIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRRS 119


>gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ ED+    +     +   GY  L   +G  AL        D+I++D+ L E+ GLE+
Sbjct: 4   VLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGLPEMDGLEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++ D   +  PV+ +TA A + D       G + Y++KP  L+  +  ++  +  
Sbjct: 64  CRRLRADG--KSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|300770258|ref|ZP_07080137.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
            33861]
 gi|300762734|gb|EFK59551.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
            33861]
          Length = 1321

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++I+EDN     L  D++    Y    + NG++    A +  PD+I+ D+ +  +SGL++
Sbjct: 1071 ILIIEDNPELSNLLVDMLSGL-YRVYVSYNGLDGAAKAEEEIPDLILSDVMMPGLSGLDL 1129

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++K + +   IP+I +TA      + +  + G +AYI+KP      + TI+  +
Sbjct: 1130 CSRLKSEPKTSHIPIILLTALGSIDKQIKGLEQGADAYITKPFDRDYVLLTIRNLL 1185


>gi|293394600|ref|ZP_06638894.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291422909|gb|EFE96144.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 231

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   + +VED           +E+ G+       G  AL+   Q +P +II+D+ L +I+
Sbjct: 1   MKPPIWLVEDEPSIADTLVYTLESEGFQVRWFERGEPALQALAQGEPALIILDVGLPDIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++   S   ++P++ +TA + + D     + G + Y++KP S       ++  +
Sbjct: 61  GFELCRRLLAQS--ADLPILFLTARSDEIDRLLGLEIGADDYVAKPFSPREVSARVRTIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|270294551|ref|ZP_06200753.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D20]
 gi|270276018|gb|EFA21878.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D20]
          Length = 1351

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN        +      +      NG    E A +  PD+I+ DI +  + G E+ 
Sbjct: 1096 LVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKEIPDIIVSDIMMPVMDGNEMC 1154

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K+D     IP+I +TA     D+E   + G ++Y++KP S S+    I+  +
Sbjct: 1155 RELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLL 1209


>gi|295688630|ref|YP_003592323.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430533|gb|ADG09705.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 614

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N +L R ++E  G +     +G+  +E  RQ + D+++MD+Q+    GL 
Sbjct: 490 RLLLVEDNAVNRELVRAMLEPFGVVVETANDGVAGVEAMRQGEFDLVLMDVQMPVKDGLT 549

Query: 64  ITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            T++I+          P+IA+TA  +          G + ++ KPIS S  +E + ++ G
Sbjct: 550 ATREIRALEGARGAATPIIAMTANVLPEQVANCLAAGMDDHLGKPISPSKLLEAVARWSG 609

Query: 122 EA 123
            +
Sbjct: 610 RS 611


>gi|260550399|ref|ZP_05824610.1| two-component system response regulator [Acinetobacter sp. RUH2624]
 gi|260406505|gb|EEW99986.1| two-component system response regulator [Acinetobacter sp. RUH2624]
          Length = 247

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + +   G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLRREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|239979783|ref|ZP_04702307.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 221

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           M++ED++         +   G+       G E L L R+ +PD+I++D+ L  I G E+ 
Sbjct: 1   MLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDGFEVC 60

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++I+      ++P+I +TA +   D     + G + Y+ KP+   +    I+  +  
Sbjct: 61  RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 114


>gi|254419224|ref|ZP_05032948.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196185401|gb|EDX80377.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 234

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + +V+D+E  +      +E+ G+      +G   L       PD++I+D+++  + G
Sbjct: 1   MANITLVDDDENIVASVSLALESHGHKITAYHDGASGLAALESAPPDLVILDVKMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +++++     +IPVI +T+   + DE      G + YI KP S  + +E +K  + 
Sbjct: 61  MEVLRRLRQ---TSQIPVIMLTSKDEEIDEILGFNLGADDYIHKPFSQRLLIERVKALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|305667709|ref|YP_003863996.1| two-component system sensor histidine kinase/response regulator
            [Maribacter sp. HTCC2170]
 gi|88709759|gb|EAR01992.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Maribacter sp. HTCC2170]
          Length = 1356

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++I+EDN+         ++   Y  +   NG+  LE+A +H PD+II D+ +    G E+
Sbjct: 1111 ILIIEDNKDVAYYLDQCLKGH-YKTIHAINGVLGLEMAFEHIPDIIISDVMMPGKDGYEV 1169

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               +KED     IP+I +TA     D       G +AY++KP         +++ +
Sbjct: 1170 CAMLKEDERTDHIPIILLTAKVTTKDRVMGLTQGADAYLAKPFIKEELFARLEQLL 1225


>gi|87121077|ref|ZP_01076968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Marinomonas sp. MED121]
 gi|86163569|gb|EAQ64843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Marinomonas sp. MED121]
          Length = 214

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 62/107 (57%)

Query: 17  LFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE 76
           +    +E +GY  L+  N   A E+   H+PD+I++D  +   SG+E+T+++K+++   E
Sbjct: 1   MIAIALEMAGYEYLEADNSRTAYEIIVDHRPDLILVDWMMPGGSGIELTRRLKKEALTAE 60

Query: 77  IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           IPVI +TA + + ++ +  + G + YI+KP S    +  +K  +  A
Sbjct: 61  IPVIMLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLRRA 107


>gi|307328135|ref|ZP_07607315.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306886254|gb|EFN17260.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 257

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED+++     R  +E  G+      +G+  LE+ R+ +PD++++D+ L E+ G+
Sbjct: 20  AHLLLVEDDKVIRNTVRMALERYGFTVFTAGDGLTGLEIFREKQPDLLLLDVMLPELDGI 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E S     P++ ++A     D     + G + Y+ KP   ++ +  I+  +  
Sbjct: 80  GLCRRVREFSLA---PILMMSARGDALDVVSGLEAGADDYVIKPCESAVLVARIRSLLRR 136

Query: 123 A 123
           A
Sbjct: 137 A 137


>gi|299144746|ref|ZP_07037814.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298515237|gb|EFI39118.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1315

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 66/116 (56%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED +   +  ++ ++       Q  NG+ ALE+ +Q +PD+I+ D+ + +++G ++ 
Sbjct: 1060 LIVEDKQDLREFLKNALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            K+IKE+  +  IPVI +TA A    +    K G +AY+ KP  + + +  I+  + 
Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175


>gi|298480102|ref|ZP_06998301.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298273911|gb|EFI15473.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1315

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 66/116 (56%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED +   +  ++ ++       Q  NG+ ALE+ +Q +PD+I+ D+ + +++G ++ 
Sbjct: 1060 LIVEDKQDLREFLKNALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            K+IKE+  +  IPVI +TA A    +    K G +AY+ KP  + + +  I+  + 
Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175


>gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 259

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++I+ED +   +  +  ++   Y  +   NG + L+ A     D I++D+ L +++G
Sbjct: 22  MAKILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNENFDAILLDLMLPDLNG 81

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LEI +++++    +  P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 82  LEIARRVRQS---KTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 138

Query: 122 E 122
            
Sbjct: 139 R 139


>gi|294499648|ref|YP_003563348.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294349585|gb|ADE69914.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 230

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++++V+D +          +  GYI     +G EALE     +PDV+I+D+ + +++
Sbjct: 1   MNKRILVVDDEKSIATAVSYAFKREGYIVDTASDGEEALEKVTSFRPDVMILDVMMPKLT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +++      + + +I +T      D+    + G + Y++KP  +   +   K  +
Sbjct: 61  GYEVCRKL---ENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALV 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|284066971|gb|ADB77766.1| AdeR [Acinetobacter genomosp. 13]
          Length = 247

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     +  + +   G   ++  NG +A+EL      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDDYDIGDIIENYLRREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|237719016|ref|ZP_04549497.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451794|gb|EEO57585.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1315

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 66/116 (56%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED +   +  ++ ++       Q  NG+ ALE+ +Q +PD+I+ D+ + +++G ++ 
Sbjct: 1060 LIVEDKQDLREFLKNALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            K+IKE+  +  IPVI +TA A    +    K G +AY+ KP  + + +  I+  + 
Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175


>gi|229588249|ref|YP_002870368.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360115|emb|CAY46969.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 224

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +      +  +  SGY+     +G++ L LARQH+ +++I+D+ L    G E
Sbjct: 2   RILVVEDEQKTADYLQQGLTESGYVVDCAASGIDGLHLARQHRYELVILDVNLPNTDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++ D   +   V+ +TA     D+ +    G + Y+ KP      +  ++  +  +
Sbjct: 62  VLEQLRRDGNQR---VMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRS 118


>gi|228899749|ref|ZP_04063996.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228859863|gb|EEN04276.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED++   +L +  + T  Y  +   +G+E ++   +   D+I++D+ +  ++G E+ K 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I+  S    IP+I +TA   + D+ +    G + YI+KP S  + M  ++  +  +
Sbjct: 62  IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114


>gi|229010405|ref|ZP_04167609.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
 gi|228750825|gb|EEM00647.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
          Length = 896

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ +E      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
          Length = 223

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        R  +  + Y      NG + L LA     D++++D+ L E+ G E
Sbjct: 2   RILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     ++ PV+ +TA     D+    + G + Y+ KP + + F+  I+  +  A
Sbjct: 62  VLRRLRAQ---KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRA 118


>gi|150009686|ref|YP_001304429.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides distasonis ATCC 8503]
 gi|149938110|gb|ABR44807.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Parabacteroides distasonis ATCC 8503]
          Length = 1369

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+DN    +  +  +    Y  L   +G +A +L  +  PD++I D+ +    G+ 
Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1180

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK D     +PVI +TA + K  +    + G + YISKP ++ + +  ++  I
Sbjct: 1181 LCRRIKGDIRTSHVPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1237


>gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905]
          Length = 227

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IV+D +    L   ++  S        +G EA ++  + K D++++D+ +    G
Sbjct: 1   MTTVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREKIDLVLLDVMMPHEDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + I+  S    +P+I +TA     D+ +    G + YI KP +    +  I   + 
Sbjct: 61  FVVCQSIRAMS---NVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|77361753|ref|YP_341328.1| osmolarity response regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876664|emb|CAI87886.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 239

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D+     L    +   G+I     N  +   L  +    ++++D+ L    GL 
Sbjct: 7   KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLIERENFHLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +++++     +IP++ +TA   + D     + G + YI KP +    +  IK  +  
Sbjct: 67  ICRRLRQKEN--DIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123


>gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
 gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1236

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 72/117 (61%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V++VEDN +N ++  +L++++GY      NG  +LE+  +   D I+MDIQ+  + GL  
Sbjct: 1111 VLLVEDNFINQQVATELLKSAGYEVDVADNGQISLEMVGKRSYDAILMDIQMPVMDGLTA 1170

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              ++++     E+P+IA+TA AM GD E+    G  A+I+KPI L+   ET+  +IG
Sbjct: 1171 ATELRKRYSFDELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLSHWIG 1227



 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            + ++V+DN   ++++  ++    +       G EAL    + + D++++D  + E+ G++
Sbjct: 968  RTLVVDDNPTALQIYSSVMRDFHFEVETASTGAEALYKLCKQQVDLVLLDWMMPEMDGIQ 1027

Query: 64   ITKQIKE---DSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +   I E   + +L   P +I +TA+A +  +  +      A + KP   S   + I
Sbjct: 1028 VIDAIDEMVAEGKLAARPVIIIMTAYAAEPLKVDLDSDRVFAMLQKPFKASSLFDEI 1084


>gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 58/119 (48%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           + ++ED++    L +  +E  GY         +AL      +P + + D+ L  + GL  
Sbjct: 4   IYVIEDDDNIRDLIKIALEGFGYEVSAFEMAEDALRHIESDQPALAVFDLMLPGMDGLTA 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++I+++  L++IP++ +TA   + D+     GG + Y++KP  +      I+  +  +
Sbjct: 64  IRRIRKNESLKDIPILILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLLRRS 122


>gi|323528028|ref|YP_004230180.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385030|gb|ADX57120.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 1197

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + +++ ED+  N+     +IE  G      RNG EAL+  +     D+I+MDI + E+ G
Sbjct: 1076 RTILLAEDDVRNIFALSHVIEPLGATLQIARNGREALDALQNGPEVDLILMDIMMPEMDG 1135

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            L    +I+ +     +P+IA+TA AM  D  R  + G + Y+SKPI +   +   + ++ 
Sbjct: 1136 LTAMGEIRRNPRFAHLPIIALTAKAMANDRLRCLEAGADDYVSKPIDVDKLVALCRVWLR 1195

Query: 122  E 122
            +
Sbjct: 1196 Q 1196



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ VED+    ++ RDL+    +  +   N    L L R  +P  +++D+ L + SGL +
Sbjct: 810 IIAVEDDLAFAEILRDLVHELDFDFVHASNAASGLALVRDMRPAAVLLDVGLPDRSGLTV 869

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            + +K D   + IP+  V+A       ++    G   Y  KP + S     I++ 
Sbjct: 870 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 921



 Score = 77.1 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 48/94 (51%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V+++ED+    +  R L+++     +      EAL+   +   D ++ D+ L + +G 
Sbjct: 930  KRVLVIEDDAPMRESIRALLQSDNTEIVAVATLSEALQHLEKLSFDCVVTDLALPDGTGY 989

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            ++ +++  ++E   +PVI  T   +  +EE   +
Sbjct: 990  DLLERLAANTEHAALPVIVYTGRMLSDEEEHRLR 1023


>gi|237717261|ref|ZP_04547742.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262406028|ref|ZP_06082578.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294806883|ref|ZP_06765708.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|229443244|gb|EEO49035.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262356903|gb|EEZ05993.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294445912|gb|EFG14554.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1315

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 66/116 (56%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED +   +  ++ ++       Q  NG+ ALE+ +Q +PD+I+ D+ + +++G ++ 
Sbjct: 1060 LIVEDKQDLREFLKNALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            K+IKE+  +  IPVI +TA A    +    K G +AY+ KP  + + +  I+  + 
Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175


>gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 229

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++++++VED E      +  ++ + +  ++   G + L+ A +   D+ ++D+ L  I G
Sbjct: 1   MRRILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++  ++++     ++ +I +TA     D+    + G + YI KP +    +  IK  + 
Sbjct: 61  FKVCDELRK--RYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|154491974|ref|ZP_02031600.1| hypothetical protein PARMER_01604 [Parabacteroides merdae ATCC
           43184]
 gi|154088215|gb|EDN87260.1| hypothetical protein PARMER_01604 [Parabacteroides merdae ATCC
           43184]
          Length = 688

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++++D++      + +     Y  L+ RNG + + +A + +PD+I+ D+ +    G 
Sbjct: 441 KKLLVIDDSDQIRWFLKHVFNKE-YQILEARNGQDGINVALKEEPDLILCDVMMPVKDGY 499

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E  ++IK D ++ + PV+ +TA     D     + G + YI+KP  + I    I   +
Sbjct: 500 ETCREIKNDPKMAQTPVVMLTAKVESEDVITGIEAGADDYITKPFDVEILRSKINSLM 557


>gi|46201806|ref|ZP_00054307.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 241

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+     L    +          ++G+E +++  + + D++++D+ L    GL 
Sbjct: 7   HILVVDDDREIRDLLTKFLMRHNLRVSAAKDGVEMMKMLDERRIDLVVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E      +P++ +TA     D     + G + Y+ KP +    +  IK  +  
Sbjct: 67  LCRRMRE--SRSGVPIVMLTAMGEDTDRIVGLEMGADDYLPKPFNPRELLARIKAVLRR 123


>gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 1127

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 71/126 (56%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQL 56
            ++++IVED+  N+    +++E  G +    RNG EALE   +         D+++MD+ +
Sbjct: 1002 RRILIVEDDVRNVYSLTNVLEPRGAMIEIARNGKEALEALERSSTDPSKAVDLVLMDVMM 1061

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
              + GL  T+++++DS  + +PV+ +TA AM  D+ER    G   Y++KP+ +   +  +
Sbjct: 1062 PVMDGLAATRELRKDSRWKTLPVLMLTAKAMPDDQERCMAAGANDYMAKPLDVDKLLSLV 1121

Query: 117  KKYIGE 122
            + ++  
Sbjct: 1122 RVWMPR 1127



 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED++    + RDL    G+  +      EAL+LA++H+P  +++D+ L + SGL + 
Sbjct: 737 LVVEDDDRFAAIVRDLSRELGFQCIVAGTAEEALKLAKRHRPSAVVLDVGLPDQSGLTVL 796

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             +K D + + IP+  V+A   +   +     G   Y+ KP+      E ++  
Sbjct: 797 DVLKRDDDTRHIPIHIVSA---EDHSQTALSLGAIGYLVKPVKREDLAEVLRTL 847



 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (44%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IVED+ +       L+ +     +      E LE  R    D +++D+ L + SG 
Sbjct: 856 RRVLIVEDDVVQRDAVSRLLASGDVETVGVGTAAECLEQLRSQTFDCMVLDLTLPDASGF 915

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            + + +  ++     PVI  T   +  D E+  +
Sbjct: 916 SLLETLSREAGHGFPPVIVYTGRDLSPDHEQQLR 949


>gi|325298664|ref|YP_004258581.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
 gi|324318217|gb|ADY36108.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
          Length = 1327

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVED+     L RD+++  GYI  +  +G EALE  ++  PD+I+ DI +  + G   
Sbjct: 1073 VLIVEDDAHLRDLLRDILK--GYIVFEAADGKEALEKIKKTHPDIILTDIIMNGMDGFTF 1130

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + +K D  +  IP++ ++A     D+ +    G  +Y++KP        TI+  I  
Sbjct: 1131 IQAVKSDPNISYIPLVVISAKNSVEDQIKASNLGANSYLTKPFHPLQIKSTIENLISR 1188


>gi|323487548|ref|ZP_08092841.1| hypothetical protein HMPREF9474_04592 [Clostridium symbiosum
           WAL-14163]
 gi|323399149|gb|EGA91554.1| hypothetical protein HMPREF9474_04592 [Clostridium symbiosum
           WAL-14163]
          Length = 255

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 71/122 (58%), Gaps = 5/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEIS 60
           ++++ ED+ +N ++  +++   G       +G EA++   Q      D+I+MD+++  + 
Sbjct: 127 RILLAEDHPINAEIATEILTLKGMRVELAGDGAEAVKCFEQSASGYFDLILMDMRMPNMD 186

Query: 61  GLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           GLE TK I+     +  +IPVIA+TA + + D++  ++ G + ++SKP+ + +    I+K
Sbjct: 187 GLEATKAIRASDHPDAAKIPVIALTANSFQEDKDMAKEAGMDDFLSKPLEIDLLYTVIQK 246

Query: 119 YI 120
           ++
Sbjct: 247 WL 248


>gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++VED+    +     +   GY  L +  G EAL        D++++D+ L ++ G
Sbjct: 1   MTRVLLVEDDPAISEPLARALGREGYEVLASSTGREALTNVEGA--DLVVLDLGLPDMDG 58

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ ++I+ D     +P++ +TA   + D       G + Y++KP  L+  +  ++  + 
Sbjct: 59  LDVAREIRADGG--RVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|302387499|ref|YP_003823321.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198127|gb|ADL05698.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 230

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++I++D +    L    ++   +   +  +  +AL L +    D+ I+D+ L + +
Sbjct: 1   MNEKILIIDDEKEITDLIEVFLQNENFQVFKCYSSQDALMLIKNESFDLAIIDVMLPDGN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ K I+E       P+I +T+     D       G + Y++KP      +  +K  +
Sbjct: 61  GFELCKLIREKYTY---PIIMLTSKTEGIDRVTGLSLGADDYVTKPFLPLELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|226953156|ref|ZP_03823620.1| response regulator [Acinetobacter sp. ATCC 27244]
 gi|226836086|gb|EEH68469.1| response regulator [Acinetobacter sp. ATCC 27244]
          Length = 243

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED      +    ++  G   ++  NG +A+E+      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDEYDIGDIIEHYLKREGMRVIRAMNGKQAIEMHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|261345981|ref|ZP_05973625.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
 gi|282565866|gb|EFB71401.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
          Length = 233

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED     +L  D ++ +GY+      G E +   ++H PD+I++D+ L  + G+ 
Sbjct: 10  HILIVEDEPKLGQLLFDYLQAAGYVPALLMRGDEVIPYVQKHFPDLILLDLMLPGMDGIS 69

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +++++     ++PVI VTA   + D     + G + Y+ KP S    +  +K  +  
Sbjct: 70  VCRELRK---FSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRR 125


>gi|260642655|ref|ZP_05416773.2| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
 gi|260621140|gb|EEX44011.1| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
          Length = 1343

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN   +   + ++++  Y  +   NG  AL++ +    D+++ D+ + E+ GL++
Sbjct: 1091 ILLVDDNIEMLDYLKGILQSK-YQVITATNGKIALDIMKTQPVDIVLSDVMMPEMDGLQL 1149

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             K +K + +   IPVI ++A +   D+      G + YI KP S S+    I   +
Sbjct: 1150 CKLVKRNIQTSHIPVILLSAKSSLEDQTSGIDIGADDYIGKPFSTSLLKGKINNIL 1205


>gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 233

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59
           +  V+I++D++    L +  +E     A+    G E L L  +++    ++I+DI + +I
Sbjct: 1   MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+I+E      IPVI +TA   + D+    + G + Y++KP S++  M  +   
Sbjct: 61  DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 234

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++++ED+     + R  +    Y    +  G E LE  R+ + D+II+DI L EI 
Sbjct: 1   MNGKILVIEDDIEIANIIRSHLTRQEYSVNWSSTGKEGLEDFRKDEYDLIILDIMLPEID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K I+    L  +P++ ++A   + D+ +  K G + YI+KP SL      +   I
Sbjct: 61  GFAVCKNIR---LLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNI 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D      L    +  +G+  +   +G  A   A+  +PD+I++D+ L ++ G 
Sbjct: 14  AKLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T+++++       PV+ +TA     D+ +    G + Y++KP  L   +  I+  +  
Sbjct: 74  TVTRRLRDAGIT--TPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 131


>gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D     K+    +   GY      +G  AL+ AR+ +PDV+++D+ L  + 
Sbjct: 1   MSGQVLVVDDERSLAKVVASYLARDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           G+E+ ++++      +  VI +TA   + D+      G + Y++KP S    +  +  
Sbjct: 61  GVEVCRRLR---TFSDCYVIMLTARTEEADKLTGLGVGADDYLTKPFSPRELVARVAA 115


>gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 226

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D           +   GY       G     LA QH  D++I+D  L   SG+E
Sbjct: 2   RILLVDDEVELTLPLSRALTREGYAVDVADEGATGYNLATQHHYDLLILDWMLPHQSGVE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++   +  +IP++ +TA     D       G + Y+ KP  L   +  ++  +  
Sbjct: 62  MCQQLR--LKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|71909695|ref|YP_287282.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849316|gb|AAZ48812.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 631

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED  +N K+   L+   G       NG+EAL    +   D+I+MD+Q+ E+ G+
Sbjct: 511 KQILLVEDTPVNQKIAEKLLSRYGCRVTIAVNGLEALAAVERDTFDLILMDMQMPEMDGV 570

Query: 63  EITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           E T+ ++    + +L   P++A+TA AM+ D E+    G + +I+KP      +  + +Y
Sbjct: 571 EATRHLRIREAELKLPRQPIVAMTANAMEEDREQCITAGMDDFIAKPFRADEVISMLLRY 630

Query: 120 I 120
           +
Sbjct: 631 L 631


>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
 gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
          Length = 715

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 2/112 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED+ +N KL   L++  G+  +   NG EA+ +  + + D+++MD+Q+ E+ GLE
Sbjct: 453 RILLAEDSIVNQKLALALLKKHGHDVVVANNGKEAVAVFDRDRFDLVLMDVQMPEMDGLE 512

Query: 64  ITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            T  ++       + +P+IA+TA AMKGD E+  + G + Y+SKPI      
Sbjct: 513 ATAAVRAKEANSDRHVPIIALTAHAMKGDREQCLEAGMDGYVSKPIRAPELF 564



 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
           + +IV+DN  N  +  +++   G  A       E L   R     +    ++I D  +  
Sbjct: 311 RALIVDDNATNRLILNEMLGNWGMQATSVAAVAEGLAALRTAYAARRPFRLVITDCHMPG 370

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G ++ ++IK+D +L +I ++ +T+ +  GD     + G  A++ KP+  S   + I  
Sbjct: 371 EDGFDLAEKIKQDGQLSDIQLVMLTSGSEPGDIAHCEQLGVVAHLLKPVKQSELFDAIGS 430

Query: 119 YIG 121
            +G
Sbjct: 431 ALG 433


>gi|329907837|ref|ZP_08274716.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546908|gb|EGF31823.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 375

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 2/117 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ EDN +N +L   L++  G+      NG+EA+ L+ QH  DVI+MD+Q+ ++ GLE 
Sbjct: 251 VLVAEDNPVNQRLAEVLLKKWGHRFSMASNGLEAIALSAQHDFDVILMDLQMPDMGGLEA 310

Query: 65  TKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T++I+E  +L  +  P+IA+TA A+  D +     G + YISKP+ +++    +   
Sbjct: 311 TRRIREREQLQGKHTPIIAMTANALSEDRQICLDAGMDDYISKPLDVTLLRAALDAI 367


>gi|322517326|ref|ZP_08070201.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322124023|gb|EFX95576.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 225

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++ ED E   ++++  +E  GY   Q  NG EA++LA Q+   VIIMDI +   +
Sbjct: 1   MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAQNAYQVIIMDIMMPIKT 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K+I+   +     VI +TA A   D       G + Y++KPISL   +  ++   
Sbjct: 61  GIEALKEIRSSGDRTH--VIMLTAMAEIDDRVTGLDAGADDYLTKPISLKELLARLRSLE 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|295693262|ref|YP_003601872.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031368|emb|CBL50847.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 180

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED    +++    +E +GY      NG++A+E A+++  DVI++DI +  + G+ 
Sbjct: 2   KILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             K+I+E  +  +  ++ +TA A   D       G + Y++KP SL   +  ++ 
Sbjct: 62  ALKKIRESGD--KTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRS 114


>gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
 gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
          Length = 240

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+++V+D      L    +  +G+  +   +G  A   A+  +PD+I++D+ L ++ G 
Sbjct: 14  AKLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGF 73

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +T+++++       PV+ +TA     D+ +    G + Y++KP  L   +  I+  +  
Sbjct: 74  TVTRRLRDAGIT--TPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 131


>gi|298493109|ref|YP_003723286.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298235027|gb|ADI66163.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1002

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 72/117 (61%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED   N  L   L+E+ G       NG++A+++ ++ +P +I MDIQ+  ++G E
Sbjct: 794 RILIVEDILENRLLLVKLLESVGLDVRAVENGLQAIDICQEWEPHLIWMDIQMPVMNGYE 853

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TKQI+  ++ + I +IA+TA A + D++ I + GC+  ISKP    +  E + +Y+
Sbjct: 854 ATKQIRAMNQGKNIIMIALTASAFEEDKQAILQVGCDDIISKPFEEKMLFEKMAQYL 910


>gi|212695545|ref|ZP_03303673.1| hypothetical protein ANHYDRO_00062 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677423|gb|EEB37030.1| hypothetical protein ANHYDRO_00062 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 227

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   V++VED+E  + L    +E   YI  +     EA+   ++ + D+ I+DI L +  
Sbjct: 1   MNYSVLVVEDDESILDLIEIYLENENYIIKKATCSEEAIRYIKEEEFDLAILDIMLPDKD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I+E       P+I +T+   +  + +    G + Y++KP      +  +K  +
Sbjct: 61  GYYLCKKIRESFNY---PIIMLTSKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|149278863|ref|ZP_01884998.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149230482|gb|EDM35866.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 526

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IVEDN +N +L   L+E  GY      NG  A+E       D+++MD+Q+ E+ G E
Sbjct: 397 HVLIVEDNPINQRLVIKLMEARGYQTTVAENGRIAVEQLAARDYDIVLMDLQMPEMDGYE 456

Query: 64  ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            TK I++ +   +  P++A+TA  +KG+ E+    G   YISKP S +   + +   
Sbjct: 457 ATKLIRKMAAPKKNTPIVAMTAHTIKGELEKCLSIGMNDYISKPFSAAELYQKVGAL 513


>gi|156743249|ref|YP_001433378.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234577|gb|ABU59360.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus castenholzii DSM 13941]
          Length = 900

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 62/122 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++V+D++    L   L+ + G+       G EAL+L  Q   D++++D+ + +++
Sbjct: 1   MPSRILVVDDHDYIRHLLVRLLTSQGHQTSVATGGREALDLLSQQSFDLVLLDLMMPDMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +Q+++ + +   PVI V+         +  + G + Y+ KP +  +    +   +
Sbjct: 61  GIEVLEQLRQQNVIYHTPVIVVSGVHDLDMVAQCIELGADDYLFKPFNDVLLRARVNASL 120

Query: 121 GE 122
             
Sbjct: 121 ER 122


>gi|298208466|ref|YP_003716645.1| two-component system, transcriptional regulatory protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848389|gb|EAP86258.1| two-component system, transcriptional regulatory protein
           [Croceibacter atlanticus HTCC2559]
          Length = 236

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  + Y     +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGIVLKDYLSMNDYEVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +E  E+P+I +TA AMK D  +  K G + Y++KP    + +  I+  +  
Sbjct: 66  TLAKEIREKNE--EVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIQAIMQR 123


>gi|109896549|ref|YP_659804.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109698830|gb|ABG38750.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 239

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED+     L R  +   G       +G  AL  A  ++ DVI++D+ L  +S
Sbjct: 1   MTDSILIVEDDLDIANLMRVNLLELGVEIDHQVDGETALHQALSNEYDVILLDVMLPNMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I ++I+ D    +I +I +T+   + D     + G + Y++KP S+      ++  +
Sbjct: 61  GLDICRKIR-DERPMQI-IIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQL 118

Query: 121 GE 122
            +
Sbjct: 119 RK 120


>gi|323484833|ref|ZP_08090189.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323693799|ref|ZP_08107993.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323401829|gb|EGA94171.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323502146|gb|EGB18014.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 233

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D E  +++ +  +E +GY  L   +G  A+EL R +   +I++D+ L +I G 
Sbjct: 5   RTILLVDDEEKIVEVLQAYLEKAGYEVLCAYDGAAAMELFRNNDISLILLDLMLPDIMGE 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI + ++    +  +P+I +TA   + D  +  + G + YI KP S    +   +  +  
Sbjct: 65  EICRMVRA---VSRVPIIMLTAKTEENDLIKGLRLGADDYIFKPFSPRTVVAKAEAVLRR 121


>gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 231

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ +++ +D++  ++     +   G+  ++  +G EALEL + H  +++I+D+ +  + G
Sbjct: 1   MQSILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGFEALELLQNHSVNLMIIDVMMPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +++E      IP+I ++A +   D+      G + YI+KP +    +  +K  + 
Sbjct: 61  IRTTLKVRE---TSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|320102491|ref|YP_004178082.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
 gi|319749773|gb|ADV61533.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
          Length = 1117

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQEI 59
            V++VEDN    ++ R  ++  G       NG +A++    H       D+I  D+Q+  +
Sbjct: 982  VLVVEDNLDVQRVIRFYLKRLGLTVESADNGQDAVQRVLSHPKGPDGFDLIFTDVQMPVM 1041

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             G E+ +++++    +  P++A+TA AM+ D  R    GC+ ++SKPI  +     ++  
Sbjct: 1042 DGFELVRRLRQAGRTK--PIVALTARAMEDDRIRCLNSGCDDHLSKPIDFNQLAGLVRSQ 1099

Query: 120  I 120
            +
Sbjct: 1100 L 1100


>gi|294627247|ref|ZP_06705834.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598486|gb|EFF42636.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 769

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N+ + + L+   G+ A    +G  AL      + D++ MD Q+  + G  
Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARMESTRYDMVFMDCQMPVLDGYA 557

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++ +    +S  + +P++A+TA AM GD ER    G + Y+SKP++       +++++
Sbjct: 558 ATRRWRAMETESGGRPVPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617

Query: 121 GE 122
             
Sbjct: 618 PR 619


>gi|288942573|ref|YP_003444813.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Allochromatium vinosum DSM 180]
 gi|288897945|gb|ADC63781.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Allochromatium vinosum DSM 180]
          Length = 356

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           + +++V+D   N+ L  + ++   Y       G  AL++ R    PD+I++DI +  + G
Sbjct: 7   QTILVVDDAPANIDLLVNTLKVE-YNVKAATRGERALQIVRSGDPPDMILLDIMMPGMDG 65

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +Q+K D   + IPVI +TA     DE R    G   YI+KPIS  + +  ++  +
Sbjct: 66  FEVCRQLKRDFTTRHIPVIFITAKIGIEDEIRGFDLGAVDYITKPISPPVVLARVRTQL 124


>gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 223

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED+    +   D ++ +GY+     +G E   L      D II+DI L E+ G+ 
Sbjct: 2   RILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGLPEMDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++ +     +  PV+ +TA     D+      G + Y++KP  +   +  I+  I  A
Sbjct: 62  VLEKWR--GAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRA 119


>gi|189459945|ref|ZP_03008730.1| hypothetical protein BACCOP_00578 [Bacteroides coprocola DSM 17136]
 gi|189433318|gb|EDV02303.1| hypothetical protein BACCOP_00578 [Bacteroides coprocola DSM 17136]
          Length = 1345

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IV+DN   + L ++      +  +   +  +AL+  +   P +I+ D+ +  I G E
Sbjct: 1088 KILIVDDNTEMLMLLQEAFSDK-FRVVVAHDAEQALKEVKNDIPMLIVTDVMMPGIDGFE 1146

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +T+++K++     +PV+ ++A     ++      G +AYI KP ++      +++ I
Sbjct: 1147 LTRRLKQNKHTMSVPVVILSAKNSSQEKIAGLDAGADAYIGKPFNIDYLKAVVERLI 1203


>gi|121535346|ref|ZP_01667158.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Thermosinus carboxydivorans Nor1]
 gi|121306038|gb|EAX46968.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Thermosinus carboxydivorans Nor1]
          Length = 361

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K++++ED+  + +L   L+  +GY      +G E L      KP ++++DI L +I G 
Sbjct: 5   AKILVIEDDARSARLMEALLMPAGYEVQTVGSGAEGLAAIETFKPHLVLLDIMLPDIDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ +++K +   Q +PV+ VTA A      R  + G + +I KP+        ++  + 
Sbjct: 65  EVLRRLKAEPAGQAVPVVMVTALADAKSRARGFELGADDFIIKPVEKIELYARVRSLLR 123


>gi|146301601|ref|YP_001196192.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146156019|gb|ABQ06873.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 1384

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
               V+IVEDN       +  +  S Y  +   NG +  ELA Q  PD+II D+ +  + G
Sbjct: 1135 SYTVLIVEDNPELRNYLKQELSKS-YKVITAENGKKGYELAVQKLPDLIITDVIMPVMDG 1193

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            L++ K IK D +   IP++ ++A AM  D       G + Y+SKP  L I   ++ + I
Sbjct: 1194 LQLCKNIKGDLKTSHIPLLMLSAKAMVKDRLEGIDSGADMYLSKPFELDILKSSLAQLI 1252


>gi|146301929|ref|YP_001196520.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146156347|gb|ABQ07201.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 1400

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + ++IVED+++  K  ++L++   Y  ++  NG  ALE A +  P++II D+ + E+ G 
Sbjct: 1145 QTILIVEDHKVLRKFMKNLLKKD-YNIIEAENGKIALEKALKFVPNLIISDVIMPEMVGT 1203

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+  +IKE+ +   IPVI +T+ +    +    + G + YISKP +L  F   +K  +
Sbjct: 1204 ELCSKIKENIKTSHIPVILLTSRSSLVYKFEGLESGADDYISKPFNLMEFRLRVKNLL 1261


>gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
 gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
          Length = 239

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 66  ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRR 122


>gi|319954021|ref|YP_004165288.1| histidine kinase [Cellulophaga algicola DSM 14237]
 gi|319422681|gb|ADV49790.1| histidine kinase [Cellulophaga algicola DSM 14237]
          Length = 1442

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IV+DN       +  +  S Y   +  NG + LELA +  P++II D+ +  + G+E+ 
Sbjct: 1187 LIVDDNPDIRSFIKRGLGESYY-IYEAENGEKGLELANKFMPNIIITDLMMPVMDGIELC 1245

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++K   E   IPV+ +TA   +  E    K G +AYI KP  L +    +   +
Sbjct: 1246 NKLKSAKETSHIPVVMLTAKTSQEKEIEGLKTGADAYIRKPFDLELLELKLSNIL 1300


>gi|302548928|ref|ZP_07301270.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302466546|gb|EFL29639.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1440

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
            +++IV+D+  N+      +   G       NG E LE+  +  PD  +++MDI + E+ G
Sbjct: 1290 RLLIVDDDIRNVFALTHALGRVGITVRYAENGREGLEVL-ERSPDVSLVLMDIMMPEMDG 1348

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  + I+    L  +P+IA+TA AM GD ++    G   Y+ KP+++   +  I   +
Sbjct: 1349 YETIRTIRNTPRLAHLPIIALTAKAMPGDRDKAIDSGANDYVPKPVNIDRLLTAICDLL 1407


>gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 239

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +    +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNANST--LPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
 gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
          Length = 228

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 6/126 (4%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQ 57
           M K +++IVED E   +   D ++  GY      NG EAL    + +   D+I++DI + 
Sbjct: 1   MKKNRILIVEDEEKLARTMGDFLKFQGYDVCCAANGREALATFYKERKTLDLILLDIMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           +ISG E+ K+I++      IPVI +TA +   D+    + G + YI+KP +L +    I+
Sbjct: 61  DISGYEVLKEIRK---TSNIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIE 117

Query: 118 KYIGEA 123
             +  A
Sbjct: 118 AVLKRA 123


>gi|254415182|ref|ZP_05028944.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177988|gb|EDX72990.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 269

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED         +L+E + +   ++ NG+  ++LA Q  PD+I+ D+ + E+ G
Sbjct: 1   MAKILVIEDELSVRDNILELLEANNFQVTESDNGLAGIQLATQQLPDLIVCDVMMPELDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++ +   Q IP I +TA A + D  +  + G + Y++KP +    +  I   + 
Sbjct: 61  YEVLTALRSNPATQTIPFIFLTAKASRDDWRQGMELGSDDYLTKPFTAKELLSAIATRLS 120

Query: 122 E 122
           +
Sbjct: 121 K 121


>gi|186472789|ref|YP_001860131.1| two component heavy metal response transcriptional regulator
           [Burkholderia phymatum STM815]
 gi|184195121|gb|ACC73085.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phymatum STM815]
          Length = 225

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED        +  +E SGY      +G   L LA++   DVII+D+ L  + G  
Sbjct: 2   RILVIEDEPKTAAYLKKGLEESGYSVEVANDGSHGLILAQEEDYDVIILDVMLPWMDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++     +  PV+ +TA     D  R  + G + Y+ KP +    +  ++     
Sbjct: 62  VVKTLRA---TRATPVLFLTARDDVNDRVRGLELGADDYLVKPFAFVELLARVRTLARR 117


>gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 220

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +  +  R  +   G+      +G  AL  A     D++++D+ L    GL+
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PV+ VTA     D  +    G + Y+ KP  L      ++  I  
Sbjct: 62  VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118


>gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
          Length = 221

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++EDN    +L R+ +    +       G E + L +++  D++++D+ L +I G
Sbjct: 1   MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I K ++  S   ++P+I +T    +  E +  + G + YI+KP   ++F++ ++  + 
Sbjct: 61  YSICKIMRGQS---DVPIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 225

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED     +  R  +E +GY      +G +   L      D +++D+ L E+ GL 
Sbjct: 2   RVLIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDGHFLGSSENYDAVVLDLGLPEVDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  + ++  E +E+PV+ +TA     D+      G + Y++KP      +  ++  I  A
Sbjct: 62  VLDRWRK--EGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRA 119


>gi|87309014|ref|ZP_01091152.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87288357|gb|EAQ80253.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 618

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 7/122 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58
           ++++VED   N +L R ++E +G       +G + +++      ++   D+I+MD+Q+  
Sbjct: 482 RILLVEDGPDNQRLLRLILEKAGAEVAIANDGRDGVDMTLTARNQEVPFDLILMDMQMPI 541

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G + T+ ++ ++     P+IA+TA AM  D +R    G + Y++KPI   + +ETI  
Sbjct: 542 MDGYQATRTLRREAI--RTPIIALTAHAMSDDRQRCMDAGVDDYLTKPIDRRLLLETIAG 599

Query: 119 YI 120
           Y+
Sbjct: 600 YL 601



 Score = 60.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 40/146 (27%)

Query: 3   KKVMIVEDNELNMKLFRDLI---------------------------ETSGYIALQTRNG 35
           ++V++++DN+     FR ++                              G+       G
Sbjct: 12  RRVLVIDDNKAIHDDFRRILAGPTNLNVAPSDIKALLFEEETLEPTELDFGFEIESAFQG 71

Query: 36  MEALELARQ-----HKPDVIIMDIQL-QEISGLEITKQI-KEDSELQEIPVIAVTAFAMK 88
            E LE             +  +D+++     GLE  KQI +   +LQ   V+  TA++  
Sbjct: 72  EEGLEKVAAAERSGFPFALAFVDMRMPPGWDGLETVKQIWRAHPDLQ---VVICTAYSDH 128

Query: 89  GDEERIRKGGCEAYIS---KPISLSI 111
             E  +++ G    +    KP  +  
Sbjct: 129 SWESLLQELGETDQLVILKKPFDVIE 154


>gi|226942667|ref|YP_002797740.1| osmolarity response regulator [Azotobacter vinelandii DJ]
 gi|226717594|gb|ACO76765.1| two-component response regulator OmpR [Azotobacter vinelandii DJ]
          Length = 246

 Score =  147 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   GY      N  +   L  +   +++++D+ L    G+ 
Sbjct: 13  KILVVDDDPRLRHLLERFLSEQGYRVRAVENVEQMDRLLGRELFNLVVLDLMLPGEDGMS 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++      ++ +I +TA   +G   +  + G + Y++KP +    +  IK  +  
Sbjct: 73  ACRRLRASDN--QVSIIMLTAKGDEGSRIQGLEQGADDYLAKPFNPRELLARIKAVLRR 129


>gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED    + + +  +   G+      +G+ AL++   H+ D++I+D+ L  + G+++
Sbjct: 3   VLLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVMLPSMDGIQL 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K I+E  E   IP++ +TA     +       G + Y+ KP  +      +K  +  A
Sbjct: 63  CKHIRERDE--NIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRRA 119


>gi|260173411|ref|ZP_05759823.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one component system') [Bacteroides sp. D2]
          Length = 960

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I++DN         L+ T  Y  ++  +G E +  A ++ PD+II D+ +  I G+E 
Sbjct: 715 VLIIDDNADIRLYVHGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 773

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K + +   IPVI +TA ++     +   GG ++YISKP S  + +  ++  I
Sbjct: 774 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLVARVRNLI 829


>gi|229590533|ref|YP_002872652.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229362399|emb|CAY49304.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 248

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I ED      +    ++ SG+   Q  +G  ALEL +  KPD++++D+ +  + G  +
Sbjct: 21  ILIAEDEPEIADILSAYLKRSGFQTAQALDGRRALELHQSLKPDLVLLDVLMPNLDGWMV 80

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I+        PVI +TA     D+    + G + YI KP + +  +   +  +  +
Sbjct: 81  LAEIRHRG---TTPVIMLTAQDQDMDKLMGLRIGADDYIVKPFNPAEVVARTQAVLRRS 136


>gi|291326185|ref|ZP_06123519.2| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
 gi|291315319|gb|EFE55772.1| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
          Length = 237

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +L  D ++ + Y       G + ++  +QH+P +I++D+ L  + G+ +
Sbjct: 11  ILVVEDEPKLGQLLFDYLQAANYQPALIARGDQVIDYVKQHQPALILLDLMLPGMDGISV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++     ++P+I VTA   + D     + G + YI KP S    +  +K  +  
Sbjct: 71  CRELRK---FSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRR 125


>gi|307153836|ref|YP_003889220.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306984064|gb|ADN15945.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 472

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 63/116 (54%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+++  +++   GY   +  N   AL+      PD+I++DI++ E+ G + 
Sbjct: 13  ILIVDDQANNLRILSEILAKKGYKIRKAINANSALKAVYSTLPDLILLDIRMPEMDGYQF 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++IK D++  EIP+I ++A      + +  + G   YI+KP   +  M  I+  +
Sbjct: 73  CERIKADAQTSEIPIIFLSALDEVFSKVKAFQVGGVDYITKPFQEAELMARIENQL 128


>gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D    + L    ++  G+  +   +G +AL   R+  P + ++D  +  I+GL++
Sbjct: 8   ILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQIRESAPAIALLDWNMPIITGLDV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++++      IPVI +TA     D     + G + +ISKP ++   +  +K  +  +
Sbjct: 68  CRRLRDTGN--RIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRS 124


>gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 248

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+  ++  R  +  +GY+     +G + L LA Q    +II+DI L  + G +
Sbjct: 24  KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +    P I +TA     D  +  + G   Y+ KP S    +  ++  + +
Sbjct: 84  VLRALRTAHQS---PFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQ 139


>gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED           +  SG++    R+G++ L  AR+   D+I++D+ L  + G  
Sbjct: 2   RILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVMLPGMDGWS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +   ++ PV+ +TA     D  +  + G + Y+ KP + +  +  I+  +  
Sbjct: 62  VLRELRRE---RDTPVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRR 117


>gi|116326604|ref|YP_796525.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|3687663|gb|AAC62213.1| LcoR [Lactococcus lactis]
 gi|76574958|gb|ABA47427.1| response regulator [Lactococcus lactis]
 gi|116108972|gb|ABJ74094.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 222

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K +++V+D +  + L    +E   Y   +  +G++A++   +   D+I++D+ + ++ G
Sbjct: 1   MKNILLVDDEQRMLDLLGLYLEGDIYHCEKEISGVQAIKRVAKGNFDLILLDVMMPDLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K I+E     EIP+I +TA     D     K G + YI+KP   +I +  I+  + 
Sbjct: 61  WTVCKNIRE---FSEIPIIMLTARGQNTDVSFGLKNGADDYITKPFDETILLARIEAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++I+ED        +  +  +GY+      G + L LARQH  D++I+D+ L E+ G  
Sbjct: 2   RLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNLPELDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +S  +   ++ +TA     D  +    G + Y+ KP      +  I+  +  
Sbjct: 62  VLQRLRAESATR---IMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR 117


>gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 249

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++V+D      L    +  +G+      +G  AL+   +  PD++++D+ L ++ G 
Sbjct: 15  AHLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGF 74

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E       P++ +TA     D+ +    G + Y++KP  L   +  I+  +  
Sbjct: 75  TVARRLRERDVT--TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRR 132


>gi|309798826|ref|ZP_07693089.1| response regulator SaeR [Streptococcus infantis SK1302]
 gi|308117552|gb|EFO54965.1| response regulator SaeR [Streptococcus infantis SK1302]
          Length = 205

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D      + +  +  +GY      +G+EALE+ ++   D+II DI +  + 
Sbjct: 1   MGKTILLVDDEVEITDIHQRYLVQAGYQVFVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G ++  ++    +  + P + +TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118

Query: 121 GE 122
             
Sbjct: 119 HR 120


>gi|326791336|ref|YP_004309157.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326542100|gb|ADZ83959.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 237

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 4/124 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  ++IVED +         +    Y  L+ + G EAL +   H PD+I++D+ L ++
Sbjct: 1   MNKTSILIVEDEQNICNFIATTLNAHEYKTLRCQTGKEALAIIPSHCPDLILLDLGLPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+   ++E       P+I ++A + + ++ +    G + YI+KP   S  +  I+  
Sbjct: 61  DGLEVLTSVRE---WSSTPIIVISARSQEAEKVQALDLGADDYITKPFGTSELLARIRTA 117

Query: 120 IGEA 123
           I  +
Sbjct: 118 IRHS 121


>gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I+ED +   +     ++  GY  +   NG E LE A + + D+I++D+ L E+ 
Sbjct: 1   MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++ +   +   ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291]
 gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59
           +  V+I++D++    L +  +E     A+    G E L L  +++    ++I+DI + +I
Sbjct: 12  MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDI 71

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+I+E      IPVI +TA   + D+    + G + Y++KP S++  M  +   
Sbjct: 72  DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 128

Query: 120 IGE 122
           I  
Sbjct: 129 IRR 131


>gi|254560791|ref|YP_003067886.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4]
 gi|254268069|emb|CAX23941.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4]
          Length = 1937

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            +V++V+D+  N+      +E  G   L   NG +++ L + +   D +++DI +  + G 
Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDSIALLKSNPNIDAMLVDIMMPGMDGY 1854

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + I+ ++  + +P+IAVTA AMKGD E+  + G   Y+SKPI +   +  ++  +  
Sbjct: 1855 ETMRAIRAEASFRSLPLIAVTAKAMKGDREKCLEAGASDYVSKPIDMDQLLAVLRVQLAR 1914



 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVED+ +   +  +L    G+  L  ++G  AL LA + KP  I +DI L ++ G  +
Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHRFKPHAITLDIGLPDMDGWAL 1589

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
               +K D   + IP+  ++       ++R  + G   ++ KP+     M  +++
Sbjct: 1590 LDLLKNDPRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640



 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VED+E        L+               ALE     + D  I+D+ L +I G 
Sbjct: 1650 RNLLLVEDDENQRASITALLSEEDVKIFGVGTASAALEALTGGRFDCAIIDLGLPDIGGS 1709

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            E+ +QI+   + +E+P+I  T   +   EE+  +      I K
Sbjct: 1710 ELIEQIRASQDGEELPIIVYTGRELTAAEEQQLRHTASTIILK 1752


>gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603]
 gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603]
          Length = 244

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+   ++     +   G+      NG EALE+   +   + I+DI + ++ G+E+
Sbjct: 18  ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNGIQLAILDIMMPQMDGIEL 77

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 78  CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 132


>gi|297559280|ref|YP_003678254.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843728|gb|ADH65748.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+   ++  R  +   G+      +G  AL LA  + PDV+++D+ L ++ G+E
Sbjct: 2   RVLVVDDDMQIIRAMRINLRARGHDVDTAADGASALRLAADNHPDVVLLDLGLPDMEGME 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++      ++P+I ++A    G++ R    G + Y++KP  +   +  ++     +
Sbjct: 62  VIQRLR---GWSQVPIIVLSARHSAGEKVRCLDSGADDYVTKPFGMDELLARMRAAERRS 118


>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 816

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++ ED  +N ++   L+   G+      NG EA+E  ++   DV++MD+ +  + GL
Sbjct: 536 RHVLLAEDGVVNQQVTVALLTKRGHPVEVVENGEEAVEAVQRGDFDVVLMDVHMPVMDGL 595

Query: 63  EITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
              + I+E        IP+IA+TA A K D ER    G + Y++KP   +     +++
Sbjct: 596 AAARMIRERERNTGGHIPIIALTASATKADRERCMAAGMDDYVTKPFRAAELYRAVEQ 653



 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59
           V++V+DNE N ++ ++++   G +     NG EAL    +       P + ++D+ + E+
Sbjct: 392 VLLVDDNETNRRITQEILVNWGMVPTLASNGAEALAALDRAIAEGVPPRLALLDVFMPEM 451

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+ ++I+   EL +  ++ +++      E R+ + G    + KPI  S  +  + + 
Sbjct: 452 DGFELARRIRTRQELAQTRILMLSSAERTDGEARMHELGISRLLMKPIKQSDLLNAVTEA 511

Query: 120 IG 121
           +G
Sbjct: 512 LG 513


>gi|239825816|ref|YP_002948440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806109|gb|ACS23174.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 233

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+DNE      +  +E   Y      +G EAL     +  D+II+DI ++ I G+
Sbjct: 4   KKILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALLRIINNNFDLIILDIMMEGIDGM 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   I++     + P+I V+A  ++ D+ +    G + YISKP SL      I  ++  
Sbjct: 64  ELCSMIRDRV---DCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLRR 120


>gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 2/120 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62
            V++VEDN +N+++ R ++E  G +     NG EAL+L +      D+++MD+Q+  + G 
Sbjct: 985  VLVVEDNSINLEMARLILEREGALVNAAGNGREALDLLQARPDAFDIVLMDLQMPVMDGF 1044

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + ++E ++LQ +PVIA+TA A+  D ER    G   +ISKP  +   + T++ ++  
Sbjct: 1045 EAVRLMRERADLQAVPVIALTAGALPSDRERAHAVGMSDFISKPFEVEHLVRTVRAHVQR 1104



 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 14/123 (11%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQE 58
            V++V+D+ L   +  +   + G+      +   A+E      A     D +++D Q+  
Sbjct: 829 HVLVVDDHALQRAVLSEAAASLGWRVEAVASSDAAIERTVAQAAAGAPFDALVLDWQMPG 888

Query: 59  ISGLEITKQIK-------EDSELQEIPVIAVTAFAMKGDEERIRKGGC--EAYISKPISL 109
             GL     +         D    E+P + +T    + D  R        +A + KPI  
Sbjct: 889 RDGLATLALLHRRLAECAADGVFAEMPPLVMTVAPSEEDALRREPAAASIDAVLCKPIMA 948

Query: 110 SIF 112
           S  
Sbjct: 949 STL 951


>gi|163851098|ref|YP_001639141.1| histidine kinase [Methylobacterium extorquens PA1]
 gi|163662703|gb|ABY30070.1| Histidine kinase [Methylobacterium extorquens PA1]
          Length = 1937

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            +V++V+D+  N+      +E  G   L   NG +++ L + +   D +++DI +  + G 
Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDSIALLKSNPNIDAMLVDIMMPGMDGY 1854

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + I+ ++  + +P+IAVTA AMKGD E+  + G   Y+SKPI +   +  ++  +  
Sbjct: 1855 ETMRAIRAEASFRSLPLIAVTAKAMKGDREKCLEAGASDYVSKPIDMDQLLAVLRVQLAR 1914



 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVED+ +   +  +L    G+  L  ++G  AL LA + KP  I +DI L ++ G  +
Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHRFKPHAITLDIGLPDMDGWAL 1589

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
               +K D   + IP+  ++       ++R  + G   ++ KP+     M  +++
Sbjct: 1590 LDLLKNDPRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640



 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VED+E        L+               ALE     + D  I+D+ L +I G 
Sbjct: 1650 RNLLLVEDDENQRASITALLSEEDVKIFGVGTASAALEALTGGRFDCAIIDLGLPDIGGS 1709

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            E+ +QI+   + +E+P+I  T   +   EE+  +      I K
Sbjct: 1710 ELIEQIRASQDGEELPIIVYTGRELTAAEEQQLRHTASTIILK 1752


>gi|22536576|ref|NP_687427.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25010502|ref|NP_734897.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76787873|ref|YP_329113.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76799057|ref|ZP_00781250.1| putative two-component response regulator [Streptococcus agalactiae
           18RS21]
 gi|77406449|ref|ZP_00783506.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77408785|ref|ZP_00785515.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77411642|ref|ZP_00787982.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77413961|ref|ZP_00790135.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22533411|gb|AAM99299.1|AE014209_12 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|23094855|emb|CAD46073.1| gbs0429 [Streptococcus agalactiae NEM316]
 gi|76562930|gb|ABA45514.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76585594|gb|EAO62159.1| putative two-component response regulator [Streptococcus agalactiae
           18RS21]
 gi|77159997|gb|EAO71134.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77162286|gb|EAO73257.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77172630|gb|EAO75769.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77174951|gb|EAO77763.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|319744355|gb|EFV96715.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D    + + R  +E +GY      +G+EAL+   +++ D+II DI + ++ 
Sbjct: 1   MTQKLLLVDDEFEIIDINRRYLEQAGYEVSVAADGIEALKEVDENRFDLIISDIMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++         P + +TA   + D+      G + +ISKP S    +  +K  +
Sbjct: 61  GYDFISEV--LVREPNQPFLFITAKVSEPDKIYSLSMGADDFISKPFSPRELVLRVKNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|291008487|ref|ZP_06566460.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D        R  +   G       +G+EAL LA     DV+++DI L  +S
Sbjct: 1   MAARVLVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIMLPGLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++++ D      PV+ ++A   + D+      G + Y+ KP S  + +  ++  +
Sbjct: 61  GYRVLERLRADDVA--TPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|194292019|ref|YP_002007926.1| response regulator in two-component regulatory system ompr family
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225923|emb|CAQ71870.1| Response regulator in two-component regulatory system ompR family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 246

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L    +E SG       NG E      +   D++++D+ L    GL 
Sbjct: 6   HILIVDDDREIRELVAAYLERSGMRVSLAANGREMRAALDKGSVDLVVLDLMLPGEDGLA 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   E + +PV+ +TA   + D     + G + Y+ KP +    +  I+  +  
Sbjct: 66  LCRDLRA-GERRNLPVLMLTARNEEADRILGLEMGADDYLVKPFAARELLARIRSVLRR 123


>gi|189467801|ref|ZP_03016586.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM
            17393]
 gi|189436065|gb|EDV05050.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM
            17393]
          Length = 1364

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++IVED E  +   ++ +E   Y  +  +NG EA +      PD++I DI + E+ GL 
Sbjct: 1113 RILIVEDEEEILSYLKEELEGD-YRIMTRKNGREAYDTILADTPDLVISDIMMPEMDGLS 1171

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + ++IK+++ +  +PVI +TA +   D       G +AY+ KP +  +   TI   I
Sbjct: 1172 LCRKIKQNTNVNHVPVILLTAKSKPEDTMEGMATGADAYMVKPFNTELLKSTIANLI 1228


>gi|149920915|ref|ZP_01909376.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
 gi|149818187|gb|EDM77642.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
          Length = 289

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
           ++++V+D+    ++    +E  GY   Q RNG EAL+L           D++++D+ + E
Sbjct: 35  RLLLVDDDPKLREVVGYALEREGYAVTQARNGAEALDLLEATGSSSADFDLLVVDVSMPE 94

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           I G ++ ++++      + PV+ ++A + + D     + G + Y++KP S       +K 
Sbjct: 95  IDGFDLVRRLR--LRDADTPVLFLSARSDEIDRILGLELGGDDYVTKPFSTRELATRVKV 152

Query: 119 YIGE 122
            +  
Sbjct: 153 LLRR 156


>gi|89070625|ref|ZP_01157905.1| DNA-binding response regulator [Oceanicola granulosus HTCC2516]
 gi|89043772|gb|EAR49974.1| DNA-binding response regulator [Oceanicola granulosus HTCC2516]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLI-ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           KK+++V+D+E   +   + +  T  +   +  NG EA+  A++   D++I+D+ L +  G
Sbjct: 5   KKILLVDDDEDIREALSEQLVMTEDFDVFEAANGSEAMTKAKEQHHDLVILDVGLPDTDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + +++       P++ +T      D+      G   Y++KP    + +  I+  + 
Sbjct: 65  RELCRLMRKQGVKA--PILMLTGHDSDSDQILGLDSGANDYVTKPFKFPVLLARIRAQLR 122


>gi|329848033|ref|ZP_08263061.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843096|gb|EGF92665.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 1140

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 75/126 (59%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56
            +K+++VED+  N+    ++ E  G +    RNG EALE+            D+++MD+ +
Sbjct: 1015 RKILLVEDDVRNVYAVTNIFEPLGAVMSIARNGREALEVLESTQGDPNQAVDLVLMDVMM 1074

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ GL  TK+I+E+ + +++PVI +TA AMK D+ER  + G   Y++KPI +   +  +
Sbjct: 1075 PEMDGLTATKKIRENKDWRKLPVIMLTAKAMKDDQERCIEAGANDYMAKPIDVDKLVSLV 1134

Query: 117  KKYIGE 122
            + ++ +
Sbjct: 1135 RVWMPK 1140



 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + +++VED+    ++  DL     ++ L      +A+  ARQ+ P  I++D+ L + SG
Sbjct: 746 SRSILVVEDDPSFARILYDLAHDLDFLCLVAHTAEDAMATARQYTPSAIVLDVGLPDHSG 805

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM-------E 114
           L +  ++K D   + IPV  V+A             G   Y+ KP+     +        
Sbjct: 806 LSVLDRLKRDVRTRHIPVHVVSAGD---YAHTALSLGAVGYMLKPVKREQLIDAFKGLEA 862

Query: 115 TIKKYIG 121
            +++ + 
Sbjct: 863 RLEQQMR 869



 Score = 80.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 45/95 (47%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ V+IVED+E+       L+++     +      E LE  +    D +++D+ L + SG
Sbjct: 868 MRHVLIVEDDEVQRHAMCKLLQSQDVECVAVGTAAECLEKLKDQTFDCMVLDLSLPDASG 927

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
             + + + ++      PVI  T   +  D+E+  +
Sbjct: 928 YSLLETLSQEEAYAFPPVIVYTGRDISYDDEQRLR 962


>gi|253580374|ref|ZP_04857640.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848467|gb|EES76431.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 985

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 72/124 (58%), Gaps = 5/124 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59
           +++++VEDNELN ++   L+   G+      +G EA+E  +   P   D+++MD+Q+  +
Sbjct: 862 RRILLVEDNELNSEIAVALLSEYGFRVDTAEDGAEAVEKVKNSTPGDYDLVLMDVQMPVM 921

Query: 60  SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           +G E T++I+   D  L  I ++A+TA A   D+++    G   ++SKPI +   + T++
Sbjct: 922 NGYEATERIRSLDDPSLAGITILAMTANAFDEDKKKALACGMNGFLSKPIVIEELISTLQ 981

Query: 118 KYIG 121
             +G
Sbjct: 982 NSLG 985



 Score = 98.7 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           K ++V+D+         ++   G  +  T +G EA+  ARQ           I+D +L +
Sbjct: 721 KALVVDDDFNTCDSVTKMLVKVGMRSEWTLSGKEAVLRARQSVEMGDAFHAYIIDWRLPD 780

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+E+T+QI+   +  + P+I +TA+     E   R  G  A+ +KP+ +S   ET+  
Sbjct: 781 MNGIEVTRQIRSLGD--DTPIIILTAYDWSDIEVEARAAGVTAFCAKPMFMSDIRETLMA 838

Query: 119 YIGE 122
            IG+
Sbjct: 839 AIGQ 842


>gi|302879220|ref|YP_003847784.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582009|gb|ADL56020.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 234

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  KV++V+D+     + R  +E  G+      +G   +  A Q   D+ ++D+ +   S
Sbjct: 6   MKTKVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALQGHHDIAVLDVMMPGKS 65

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+++  QI+       +PV+ +TA     D     + G + Y+ KP +       I+  +
Sbjct: 66  GIDVLVQIRAQGA---MPVLMLTARGDDADRIIGLELGADDYVPKPCTPRELTARIRAIL 122

Query: 121 GEA 123
             +
Sbjct: 123 RRS 125


>gi|297202340|ref|ZP_06919737.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710140|gb|EDY54174.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   +      +   G++     +G  A++ A   +PD++I+DI L    GL
Sbjct: 19  RRVLVVEDDPTIVDAIATRLRAEGFLVQTAVDGPSAVDTAEAWQPDLLILDIMLPGFDGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 79  EVCRRVQA---ARPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135


>gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 239

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++ +  +     P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 271

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D     +L    +   G+      +G  A+  AR+ +PD +++D+ L ++ GL 
Sbjct: 45  RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 104

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   E  E+PV+ +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 105 VLARLRR--ERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRS 162


>gi|163815964|ref|ZP_02207334.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
 gi|158448774|gb|EDP25769.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 62/123 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   + IVED++   ++    ++ SGY   +  N         +  PD++++DI L ++ 
Sbjct: 1   MAVHIYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSKTAEKVPDLVLLDIMLPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLEI K+++   +   IP+I VTA   + D+ +    G + Y++KP  +   +  +K  +
Sbjct: 61  GLEIVKKLRSRPDTVRIPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALL 120

Query: 121 GEA 123
             +
Sbjct: 121 RRS 123


>gi|154492635|ref|ZP_02032261.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC
           43184]
 gi|154086940|gb|EDN85985.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC
           43184]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D E   ++ +  +E  GY      +  EAL++       ++++D+ + EISG
Sbjct: 3   MPKILVVDDEEDLCEILKFNLEIEGYEVDTAFSAEEALKM-DIASYQLLLLDVMMGEISG 61

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   +K++ +  +IP+I +TA   + D       G + YISKP S+   +  +K  + 
Sbjct: 62  FKMASILKKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVLR 121

Query: 122 E 122
            
Sbjct: 122 R 122


>gi|104782036|ref|YP_608534.1| response regulator [Pseudomonas entomophila L48]
 gi|95111023|emb|CAK15743.1| putative response regulator [Pseudomonas entomophila L48]
          Length = 233

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED+    +L    ++ + +       G   L+  R+ KPD++I+D+ L  + G
Sbjct: 1   MPNILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLDEFRRQKPDLVILDLMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + +++  E Q +P++ +TA     D+    + G + Y++KP    + +  ++  + 
Sbjct: 61  LQVCRLLRQ--ETQCLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
 gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED           I   G+ A    +G  A++ A Q +PD++IMDI L  + GL
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I  +   + +PV+ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 73  EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129


>gi|265752724|ref|ZP_06088293.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263235910|gb|EEZ21405.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1327

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++DN   + + +++     Y      +G +A +    H+ D+II D+ L +I+G E
Sbjct: 1077 TLLLIDDNAELLYIMKEIF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1135

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  +IK D     IPV+ +TA     D       G + YI+KP  + +    +   I 
Sbjct: 1136 LCTRIKSDLRFNHIPVVILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1193


>gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 624

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++ EDN +N    ++L+E  G+  +    G  ALE  R+ + D ++MDIQ+ E+ G+E
Sbjct: 375 TVLLAEDNPINQIYVQELLEMDGHEVVVAHTGRRALEALRKKRFDAVLMDIQMPEMDGIE 434

Query: 64  ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T+ I+ D+       IP++A+TA A+KGD E   + G   Y+SKP+S +     + +  
Sbjct: 435 ATRAIRSDASGDFDPAIPIVALTAHALKGDRETFLRAGMNEYLSKPVSPADLEAALGRVT 494

Query: 121 GEA 123
           G A
Sbjct: 495 GGA 497


>gi|228964063|ref|ZP_04125190.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795633|gb|EEM43113.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 896

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ +E      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHATIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|254446207|ref|ZP_05059683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260515|gb|EDY84823.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 664

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++VED  +N +L   L+ + G+      NG+EA+E A +   D I++DI + ++ G 
Sbjct: 535 ARILLVEDEPVNRELMDSLLSSLGHKVSVATNGLEAVECASETIFDFILLDISMPKLDGF 594

Query: 63  EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              K+++   ++    P++A+TA     D++   + G   Y+SKPIS +     + K++ 
Sbjct: 595 GAAKRVRALQNQNANTPIVAMTAHVTSEDKDSCFQAGMNDYLSKPISFTKLKGVLAKWLE 654

Query: 122 E 122
            
Sbjct: 655 R 655


>gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638]
 gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299]
 gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638]
 gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299]
          Length = 260

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|168181983|ref|ZP_02616647.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|237796826|ref|YP_002864378.1| response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674789|gb|EDT86750.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|229262727|gb|ACQ53760.1| response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++ +VED++   K    L+ + G+         EAL     +K D+ ++DI L + +G
Sbjct: 1   MKRIFLVEDDKAITKNLILLLRSEGFTVTHAPTRSEALAALVGNKFDLALIDISLPDGNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  +IKE    Q+IPVI +TA   +         G + YI+KP      +  I+  + 
Sbjct: 61  FTVCTEIKE---TQDIPVIFLTASGDEASVVTGLNIGADDYITKPFRPRELIARIRSALR 117

Query: 122 EA 123
           ++
Sbjct: 118 KS 119


>gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 227

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED E   ++ +  +E  GY +   + G EA+E       ++I++D+ L  IS
Sbjct: 1   MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++I+  + +  IP+I +TA     D+      G   YI+KP  +   +  I+  +
Sbjct: 61  GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|149279746|ref|ZP_01885874.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Pedobacter sp. BAL39]
 gi|149229544|gb|EDM34935.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Pedobacter sp. BAL39]
          Length = 1300

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VED+   +K     +    Y  L+  +GMEALEL  +H   +++ DI +  ++GL++
Sbjct: 1052 ILLVEDHNDILKYISQELRGE-YFILKANDGMEALELLEKHPVQLVVSDIMMPRMNGLDL 1110

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             ++IK D     IPVI +TA             G +AYI KP S+S     IK  + 
Sbjct: 1111 CRRIKTDLTYSHIPVILLTAKTSVDSRIEGLGTGADAYIDKPFSMSHLEMQIKSLLR 1167


>gi|126664194|ref|ZP_01735186.1| response regulator receiver domain protein [Flavobacteria bacterium
           BAL38]
 gi|126623726|gb|EAZ94422.1| response regulator receiver domain protein [Flavobacteria bacterium
           BAL38]
          Length = 120

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 67/119 (56%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++IV+D    +       + S Y     R+G EAL++ + + PD+II+DI +  + G
Sbjct: 1   MKKILIVDDEPNIVMTLEYTFKKSNYEVFIARDGQEALDILKTNFPDIIILDIMMPMVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               +QI++D+ L    V+ ++A   + D E+    G +AY++KP S+   +E +++ +
Sbjct: 61  FATLEQIRKDANLTHTKVMFLSAKNKESDIEKGLALGADAYLTKPFSIKKVVEKVEELL 119


>gi|194364065|ref|YP_002026675.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194346869|gb|ACF49992.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 237

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++++D     +     +   GY   Q   G E L+LA     D++I+DI L ++ G 
Sbjct: 13  ARVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGH 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ +Q+++     ++PVI +T  A + ++ R    G   Y++KP      M  ++  + 
Sbjct: 73  EVLEQLRQ---WSQVPVIMLTVRAGETEKVRALDTGANDYVTKPFGTQELMARVRALLR 128


>gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1]
 gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia
           coli UTI89]
 gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034]
 gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146]
 gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252]
          Length = 260

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|53803652|ref|YP_114696.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757413|gb|AAU91704.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 238

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++++D+    +L  + +   GY      +G   L  A   +  + ++D+ L  ++G
Sbjct: 1   MTRLLLIDDDTALCELLSEYLALEGYAVEAVHDGEAGLAAALSGRYRLALLDVTLPRLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+++S L   PV+ +TA     D     + G + Y+ KP +    +  IK  + 
Sbjct: 61  FEVLKRIRQESSL---PVLMLTARGDDFDRVVGLEIGADDYLPKPFNHRELVARIKAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
 gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
          Length = 219

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED+    +     ++  GY     R+G  AL         + ++D+ L  + GLE
Sbjct: 2   RVLLVEDDASLGEGILTSLKPEGYTVDWVRDGSSALHALTHESFGLAVLDLGLPRLDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q++        PV+ +TA     D       G + Y+ KP  ++     ++  +  +
Sbjct: 62  VLRQLRAAEN--PTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRRS 119


>gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
           K+++ +D     +L    ++   +      +GM+AL    +      + ++D+ +  + G
Sbjct: 7   KILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMDG 66

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++I+      + PVI +TA   + +     + G + YI KP S       +K  + 
Sbjct: 67  FALCREIRS---FSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLK 123

Query: 122 EA 123
            A
Sbjct: 124 RA 125


>gi|325106499|ref|YP_004276153.1| histidine kinase [Pedobacter saltans DSM 12145]
 gi|324975347|gb|ADY54331.1| histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1366

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            +  V++VEDN+         +    Y+ L+ R+G+E L+LA +  PD+I+ D+ +  + G
Sbjct: 1110 MHTVLVVEDNDELRTFLAQSLSGE-YLVLEARDGVEGLDLALKEVPDIIVSDVTMPNMDG 1168

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +E    +K++     IPVI +TA A    +    + G   Y++KP S+ +    I+  I 
Sbjct: 1169 MEFCSLVKKNEVSSHIPVIMLTAMASHLHQVEGLESGANIYLTKPFSVQLLELHIRNLIN 1228

Query: 122  EA 123
             A
Sbjct: 1229 SA 1230


>gi|308375329|ref|ZP_07443555.2| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu007]
 gi|308346707|gb|EFP35558.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu007]
          Length = 254

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L +  +   G+      +G EA+    +  PDV+++DI L ++ GLE
Sbjct: 30  RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 89

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++E       P + +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 90  ILRRVRESDVY--TPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 147


>gi|304398764|ref|ZP_07380635.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304353711|gb|EFM18087.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 231

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++I+ED+     +    ++   Y  +   +G   L+ AR+ +PD+I++DI L  ++G 
Sbjct: 4   KRILIIEDDADAAGVLEAYLKRENYEVMIVGDGPGGLDAARRWQPDLILLDIMLPGMNGT 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   ++      + PVI VTA +   D     + G + Y+ KP      +  ++  +  
Sbjct: 64  EVLAALRRRD---DTPVIMVTAMSDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|322419718|ref|YP_004198941.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
 gi|320126105|gb|ADW13665.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
          Length = 733

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 1   ML-----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55
           M+     ++++IVED+    +  R  +E  G+      NG+EAL L +Q  PD+I+ D+ 
Sbjct: 1   MMVGGELREILIVEDSATQAEQVRYSLEKHGFAVRTAANGVEALSLMQQKPPDIIVSDVV 60

Query: 56  LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
           + E+ G E  +++KED   ++IPVI +T+ +   D  R  + G + +I KP      +  
Sbjct: 61  MPEMDGYEFCRRVKEDETYKQIPVILLTSLSDPRDVLRGLECGADNFIVKPYDERYLLSR 120

Query: 116 IKKYIGEA 123
           ++  I  A
Sbjct: 121 LQYLIANA 128


>gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 227

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED     ++    ++  GY      +G EAL        D+I+MDI + +++G E
Sbjct: 2   RVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIMMPKLNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +      PV+ +TA     D  +    G + YI KP      M  I+  I  
Sbjct: 62  VLEKMRREKN--STPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRR 118


>gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +   +     ++  GY      NG   L+ A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E    +  P+I +TA     D       G + YI KP ++   +  I+  + 
Sbjct: 61  MEVARRLREK---KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
 gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML+K+++V+D +    L    ++       +  +G EAL        D+ I+DI L +IS
Sbjct: 1   MLEKILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL I + I+        PVI ++A   + D+      G + YI+KP      +  +K  +
Sbjct: 61  GLSICQSIRSKEYTY--PVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
 gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+    ++ +  +E   Y  +   +G EA E   +    ++++D+ + +ISG+E
Sbjct: 2   KLLLVEDDIEISQMLKSYLEAENYEVICAVDGEEACEKFEKESYSLVLLDLMIPKISGME 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+  S    +P+I V+A     D+      G + YI+KP S++  +  IK  I  +
Sbjct: 62  VMQHIRTHS---TVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRS 118


>gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 239

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++ +  +     P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|319648303|ref|ZP_08002520.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2]
 gi|317389938|gb|EFV70748.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2]
          Length = 257

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+MIVED+E   KL RD +E  GY  +   +    LE+  Q KPD+ ++DI L    G
Sbjct: 29  MTKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDG 88

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               +QI++ S     P+I ++A + + D+    + G + YI KP S  + +  IK  I 
Sbjct: 89  YYWCRQIRQHS---TCPIIFISARSGEMDQVMAIENGGDDYIEKPFSYEVVLAKIKGQIR 145

Query: 122 EA 123
            A
Sbjct: 146 RA 147


>gi|282898494|ref|ZP_06306484.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Raphidiopsis brookii D9]
 gi|281196660|gb|EFA71566.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Raphidiopsis brookii D9]
          Length = 377

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 54/117 (46%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D+     L + ++E   Y  + T NG E +  A    P +II D  + E+SGLE+
Sbjct: 4   ILVIDDDSSIQILLKRILEKQHYQVITTSNGREGILQAVASPPALIICDWMMPELSGLEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              IK    L     I +T+     D  +    G + +ISKPI  +     ++  + 
Sbjct: 64  CNFIKNHPNLSSTFFILLTSLDSVSDRVKGLDSGADDFISKPIEQNELQARVRAGLR 120


>gi|237711465|ref|ZP_04541946.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 9_1_42FAA]
 gi|229454160|gb|EEO59881.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 9_1_42FAA]
          Length = 1357

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++EDNE        L     Y   +  NG E +++A    PD+II DI +    G    
Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGVDVAISKIPDLIISDIMMPVKDGFTCC 1166

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E      IP++ +TA A   D  +  K G + Y+ KP +  +    ++  I
Sbjct: 1167 RELREQLRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221


>gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
 gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 268

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VED     +     +E  G+       G EAL +      D  ++DI L    G+ 
Sbjct: 47  RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGIS 106

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++E      +P++ ++A +   D+      G + Y+ KP S+   +  ++  I  
Sbjct: 107 VLRSLRERGI--SLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRR 163


>gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 65/116 (56%), Gaps = 2/116 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++++ED+   ++  +  +   GY      +G   L+LAR  +PD++++D+ L  + 
Sbjct: 1   MAERILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMG 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           GLE+ ++I+++    E+P++ ++A   + D+    + G + Y+ KP  L   +  I
Sbjct: 61  GLEVVREIRKED--PELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARI 114


>gi|78048520|ref|YP_364695.1| putative two-component system regulatory protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|289668239|ref|ZP_06489314.1| putative two-component system regulatory protein [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294625107|ref|ZP_06703752.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665487|ref|ZP_06730771.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325926516|ref|ZP_08187833.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78036950|emb|CAJ24648.1| putative two-component system regulatory protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|292600571|gb|EFF44663.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604741|gb|EFF48108.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325543088|gb|EGD14534.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++VED+  +  +    +   G+      +G  A++L RQ  PD++++D+ L ++SG+
Sbjct: 4   KKVLLVEDDSDSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   I+      + PVI VTA   + ++    + G + Y+ KP S    +  +   +  
Sbjct: 64  EVLSTIRRAG---DTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|83745654|ref|ZP_00942712.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
 gi|83727731|gb|EAP74851.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
          Length = 245

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L  D +  + Y      +G  A++  R+  P+++++D+ L    GLEI
Sbjct: 28  ILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 87

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++      ++P++ VTA   + D     + G + YI KP S    +  IK  +  
Sbjct: 88  CREVRA---FSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRR 142


>gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED +   +     ++  GY      NG   L+ A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E    +  P+I +TA     D       G + YI KP ++   +  I+  + 
Sbjct: 61  MEVARRLREK---KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 239

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           VM+V+DN+  +    +L++  GY  +   +GMEAL L  Q+  D+I++D+ +  ++GL  
Sbjct: 11  VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLNGLSA 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++E      IPVI ++A   + D+      G + Y+ KP + +  M  +K ++  
Sbjct: 71  LMKLREKYR---IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRR 125


>gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 305

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +    + +E SG+  L   +G  AL +A +  PD+I++D  +  + G + 
Sbjct: 11  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDLILLDAVMPGMDGFDT 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++K ++ + ++PV+ +T         R  + G   Y++KPI++      I+ ++  A
Sbjct: 71  CARLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129


>gi|256379954|ref|YP_003103614.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924257|gb|ACU39768.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++V+D    ++  R  +   GY  L   +G  AL  A + KPDV+++D+ L ++ G
Sbjct: 1   MTKVLVVDDEPQIVRALRINLSARGYQVLTAHDGAAALRAAAEGKPDVVVLDLGLPDVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++       +P+I ++A A   D+      G + Y++KP  +   +  ++  + 
Sbjct: 61  TEVIAGLR---GWTTVPIIVLSARADSTDKVEALDAGADDYVTKPFGMDELLARLRAAVR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ]
 gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ]
          Length = 267

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
            ++++V+D +    L +  +   GY      +G + LE L  + + DV+++D+ +    G
Sbjct: 29  ARILVVDDEQDLRALLQRYLSDQGYAVR-ALDGGQHLERLLGRERFDVLVLDVMMPGEDG 87

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + ++++   E   IP++ +TA     D     + G + Y+ KP +       I+  I 
Sbjct: 88  LSLCRRLRARGET--IPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIR 145

Query: 122 E 122
            
Sbjct: 146 R 146


>gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 223

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED E        ++   G+       G E L+   ++  D++++D+ L  + G E+ 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  +  
Sbjct: 62  RQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 115


>gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 223

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I +D+       +D +E SGY  +  +NG EAL L   ++P +++ DI++ +  G  +
Sbjct: 5   ILIADDDPGIRLAVKDYLELSGYSVITAQNGQEALSLLETYRPHLLVSDIKMPQKDGYTL 64

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + +++  E + +PV+ +T    K +  +  + GC+ Y+ KP  +      I+  +
Sbjct: 65  VRHLRQLPEFRLLPVVFLTERGTKEERIQGYEVGCDVYLPKPFEMDELKAVIRNLV 120


>gi|206967994|ref|ZP_03228950.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
 gi|206736914|gb|EDZ54061.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
          Length = 896

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQNANIITAQNGLECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMENIRMNLGLSEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
 gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
          Length = 578

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ EDN +N ++   +I   G      ++G EA+E   +   D+I MD Q+ E+ G 
Sbjct: 454 ARVLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVEAFTRQPYDLIFMDCQMPEMDGY 513

Query: 63  EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + T+ I++      +   VIA+TA AM G  E     G + Y+SKP +L    E I K+
Sbjct: 514 QATRAIRQRELGSGRHTTVIALTAHAMAGAREHCLSAGMDDYLSKPFNLEQLQELIVKW 572



 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+DN++   +  +L    G+ +     G   L+   +    ++++D++L  ISG+E+
Sbjct: 7   ILIVDDNQVVCDVLTELFRNEGFDSWGVATGEACLDEVTRASCKLVMLDVRLPGISGIEV 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIGE 122
            + I+ D       VI +T+        +  + G + Y+ KP   L + + T+ K +  
Sbjct: 67  LEAIRRD--HPRTEVIIMTSHVSLETAVQALRLGAQDYLFKPFDDLEMVIATVNKALER 123


>gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 220

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +  +  R  +   G+      +G  AL  A     D++++D+ L +  GL+
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGLPKRDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PV+ VTA     D  +    G + Y+ KP  L      ++  I  
Sbjct: 62  VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118


>gi|115375443|ref|ZP_01462704.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367570|gb|EAU66544.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 965

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +DN       R L++ +  +    ++G  A +      PD+++ D+ +  + G  
Sbjct: 609 RVLVADDNSDMRGYIRSLLDPT-CVVETVQDGEAAYQAILDSPPDLVLSDVMMPRLDGFG 667

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E+ + Q +P+I ++A A +       + G   Y+ KP S    +  I+  +  A
Sbjct: 668 LLQKVRENPKTQGVPLILLSARAGEEARIEGLQAGANDYLVKPFSARELLARIENAVRLA 727


>gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 220

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED+    +     +   GY     ++G  AL        D+ ++D+ L  + GLE
Sbjct: 2   RLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPRMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++       +PV+ +TA     D       G + Y+ KP  L+     ++  +  +
Sbjct: 62  VLRRLR--GSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRS 119


>gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 218

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I ED E         +E +GY  +   +G +AL+ A   + D++++D+ L  I G
Sbjct: 1   MTRILIAEDEERIAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + ++   +   +PVI +TA     D       G   Y++KP      +  ++  + 
Sbjct: 61  FEVLRTLR--GQGSALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLR 118

Query: 122 E 122
           E
Sbjct: 119 E 119


>gi|297162476|gb|ADI12188.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 258

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             +++VED+E+     R L+E  G+      +G+  LEL R+ +PD++++D+ L E+ G+
Sbjct: 24  AHLLLVEDDEVIRNTVRMLLERYGFTVSTAGDGLTGLELFRERRPDLLLLDVMLPELDGI 83

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++++E S     P++ ++A     D     + G + Y+ KP   ++ +  I+  +  
Sbjct: 84  GLCRRVRELSLA---PILMMSARGDALDVVSGLEAGADDYVVKPCESAVLVARIRSLLRR 140

Query: 123 A 123
           A
Sbjct: 141 A 141


>gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 242

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I+ED     +   DL E +GY      +G   L  A   +  ++++D+ L  + G  +
Sbjct: 10  ILIIEDEIAIAEGLVDLCELNGYRVKHVVDGESGLAEALSGQYGLVLLDLMLPGMDGFTV 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I+E    + +P+I ++A     D     K G + YI KP S+ + +  I+  +  +
Sbjct: 70  CDKIREKD--KSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRS 126


>gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 932

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 70/120 (58%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+ V+DN  N++L  +L++      +   NG +A+ L++  + D+I+MDIQ+  + GLE
Sbjct: 662 RVLAVDDNPANLRLVSELLKEMHVKVVTVDNGADAIRLSQTSQFDLILMDIQMPGMDGLE 721

Query: 64  ITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            TK+++  +S  +  PV+A+TA A    + R    G + Y++KP+S +     I +++  
Sbjct: 722 ATKRLRSSESREERTPVVALTAHAANEQKSRFLLAGMDDYLTKPVSENELRHIIDRWVTR 781


>gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
 gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
          Length = 224

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++I+ED E   +     ++  GY      +G + LE A +   D+I++D+ L  ++G
Sbjct: 1   MHHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++     +  P+I +TA     D       G + Y+ KP ++   +  I+    
Sbjct: 61  MEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|220915750|ref|YP_002491054.1| response regulator receiver protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953604|gb|ACL63988.1| response regulator receiver protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 123

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 66/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   + + R ++  S Y  +  R+G E +E AR  +PD+I+MD+ +  + G 
Sbjct: 4   KKILLVDDSSTVLLMERMILAKSAYDVVTARDGQEGVEKARAERPDLILMDVVMPRMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++++E  E   IPVI VT        E     GC  Y++KPI+    +  ++  +G+
Sbjct: 64  EACRKLREHEETAAIPVIMVTTRGELASVETGYASGCTDYVTKPINGLELLAKVRSCLGQ 123


>gi|158334669|ref|YP_001515841.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304910|gb|ABW26527.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+     +F + +E SGYI     +G      A + +  +I++D  L ++ GL 
Sbjct: 2   RLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGLG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++       IP++ +TA     D+      G + Y+ KP+ L   +  I+  +  
Sbjct: 62  LCQRLRAHGYT--IPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRR 118


>gi|167036030|ref|YP_001671261.1| response regulator receiver protein [Pseudomonas putida GB-1]
 gi|166862518|gb|ABZ00926.1| response regulator receiver protein [Pseudomonas putida GB-1]
          Length = 121

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 67/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IV+D+   M    + +E  GY  L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARVLIVDDSPTEMYRLTEWLEKHGYQVLKASNGADGVALARQDKPDAVLMDIVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T+Q+ +D E   IPVI VT    + D     + G   +++KP+     +  +K+ +G
Sbjct: 61  FQATRQLSKDPETSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVEEDALIAKLKEVLG 120


>gi|108760607|ref|YP_628793.1| response regulator [Myxococcus xanthus DK 1622]
 gi|108464487|gb|ABF89672.1| response regulator [Myxococcus xanthus DK 1622]
          Length = 169

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 73/121 (60%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++V+D +   +++ + +E  G+     RNG+EA+E A + +PD+I+MD+ L  + G 
Sbjct: 42  KRVLVVDDFDDAREMYAEYLEFVGFEVDTARNGVEAVEKASEGEPDIILMDLSLPVMDGW 101

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E T++IK+DS  ++IPV+A+T   + G+ E  R  G + +++KP         I+  +  
Sbjct: 102 EATRRIKQDSRTRDIPVMALTGHVLAGNAEHARDAGADEFVAKPCLPQDLENKIRNMLKP 161

Query: 123 A 123
           +
Sbjct: 162 S 162


>gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB
 gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 235

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+ VED+++  +  +  +E  G+      +G+  LE  R ++PD+ ++D+ +  + G+ 
Sbjct: 6   HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDGVS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+++S    +PVI ++A A   D     + G + Y++KP   ++ +  I+  +  
Sbjct: 66  LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121


>gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 241

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++V+D        +  +E  G+      +G +  + A++  PD++I D+ +    G
Sbjct: 14  SPRLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGDDGWQKAQEMLPDLVISDVMMPRCDG 73

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
             + K+++ED  L   PVI +TA  M  D       G + YI KP      
Sbjct: 74  YGLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKPFDPEEL 124


>gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 543

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQEIS 60
            V+IVED      L R ++E +G       +G EA+E+    ++   D+++MD+ +  +S
Sbjct: 419 HVLIVEDAPSIQFLVRRILEGAGATVTSAGDGAEAIEMLLADQERPFDLVLMDMHMPIMS 478

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +  + +++  +  EIP+IA+TA AM GD  +    GC+ Y+ KPI     ++ + KY+
Sbjct: 479 GYDAAQALRQ--KGCEIPIIALTASAMTGDRIKCLAAGCDDYLPKPIDQRKLLQMVAKYV 536


>gi|85707059|ref|ZP_01038148.1| DNA-binding response regulator [Roseovarius sp. 217]
 gi|85668500|gb|EAQ23372.1| DNA-binding response regulator [Roseovarius sp. 217]
          Length = 240

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+          +E +G  A   R+ ++        K D+I++D+ +    GL 
Sbjct: 6   HILVVDDHREIRDAVTRYLEKNGMRATSARDAVDMDAKLANGKYDLIVLDVMMPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++   S    +P++ +TA   + D     + G + Y++KP +    +  IK  +  +
Sbjct: 66  VCRRL---SASGSVPILMLTALGEETDRIVGLEIGADDYLAKPFNPRELVARIKAILRRS 122


>gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579]
 gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L]
 gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1]
 gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI]
 gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579]
 gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L]
 gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1]
 gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++EDN    +L R+ +    +       G E + L +++  D++++D+ L +I G
Sbjct: 1   MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I K ++  S   ++P+I +T    +  E +  + G + YI+KP   ++F++ ++  + 
Sbjct: 61  YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|330972643|gb|EGH72709.1| response regulator receiver [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 121

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 68/119 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+   M     ++E  G+  L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+Q+ +D +   IPVI +T    + D+   ++ G   Y++KP+     M+T+   +
Sbjct: 61  FQATRQLTKDPDTTNIPVIMITTKDQETDKVWGKRQGARDYLTKPVDEETLMKTLNAVL 119


>gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 235

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + ++++ED+    ++    +   GY      +G E L   ++H  D++++D+ + ++ 
Sbjct: 1   MSQHILLIEDDLSIAEMLLKALTKEGYSLTTAYDGEEGLLAFKRHTYDLVLVDLMMPKVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I+  S    +P++ ++A     D+      G + Y++KP S+      I+  I
Sbjct: 61  GMEVIRRIRTHSA---VPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAI 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|322419915|ref|YP_004199138.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320126302|gb|ADW13862.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 232

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++VED+    ++ R  +E +G+  + T +G+ ALELAR   P + ++D+ L ++S
Sbjct: 1   MSRPILLVEDDLKLAEIARVYLEQAGFRVIHTESGVRALELARSENPVLAVLDLMLPDLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + +++   +   +IPVI +T+ + + +       G + YI KP S    +  ++  +
Sbjct: 61  GEAVCREL---TASTDIPVIMLTSKSSEEERLAGFALGADDYIVKPFSPRELVCRVQAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 KRA 120


>gi|187779051|ref|ZP_02995524.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC
           15579]
 gi|187772676|gb|EDU36478.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC
           15579]
          Length = 234

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED+     + ++ +   GY A Q  +G+EA+E  +  +  ++IMD+ +  + G+E
Sbjct: 5   KILIVEDDININNMIKESLIKEGYDAGQAFHGLEAVEKFQGEEWHMVIMDVMMPVMDGIE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++I+E S++    +I ++A     D+      G + YI KP S+S  +  +K  I  A
Sbjct: 65  AMRRIREKSKVS---IIILSAKGEDSDKIIGLGMGADDYIVKPFSISELIARVKSNIRRA 121


>gi|91215802|ref|ZP_01252772.1| two component transcriptional regulator, winged helix family
           protein [Psychroflexus torquis ATCC 700755]
 gi|91186268|gb|EAS72641.1| two component transcriptional regulator, winged helix family
           protein [Psychroflexus torquis ATCC 700755]
          Length = 225

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 1   MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
           M K    ++I ED     KL +  +   GY  L  +NG E L+L + +   +I++D  + 
Sbjct: 1   MNKGNYTILIAEDQVDIAKLLKKGLTEEGYQCLVVKNGEEVLKLVKHNSISLILLDWMMP 60

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           ++ G+++ KQ++  SE    P+I +TA     D     K G   YI KP +    +  I+
Sbjct: 61  KLKGIDVCKQLR--SEHISTPIIFLTAKDTIEDTIEGLKSGANDYIKKPFNFEELLARIE 118

Query: 118 KYIG 121
            ++ 
Sbjct: 119 THLR 122


>gi|83310938|ref|YP_421202.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945779|dbj|BAE50643.1| Response regulator containing a CheY-like receiver domain and an
           HD-GYP domain [Magnetospirillum magneticum AMB-1]
          Length = 369

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61
             +++V+D+  ++ L  +L+  + Y      +G   L++A    +PD++++D+ + +I G
Sbjct: 10  ATILVVDDSPDDVWLMSELL-KADYRVKVANSGERGLKIAMGNERPDLVLLDVMMPDIDG 68

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ +Q+K DS   +IPVI +T+     +E+R    G   YI+KP S SI +  +K ++ 
Sbjct: 69  YEVCRQLKTDSRTHDIPVIFLTSKTRMAEEKRGLDMGAVDYITKPFSPSIVLARVKAHLR 128


>gi|329955010|ref|ZP_08295991.1| putative transcriptional regulatory protein RprY [Bacteroides
           clarus YIT 12056]
 gi|328526300|gb|EGF53315.1| putative transcriptional regulatory protein RprY [Bacteroides
           clarus YIT 12056]
          Length = 238

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED E    + +D +E   +      +G E L      +PDV++ D+ +  + G E
Sbjct: 5   KVLLVEDEETLAMIIKDTLEGQNFTIHTAADGEEGLRRFFDLRPDVLVADVMMPRMDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++    +  PV+ +TA +   D     + G   Y+ KP  +   +  IK   G A
Sbjct: 65  MVRRIRQTD--KHTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALAGRA 122


>gi|256839706|ref|ZP_05545215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|256738636|gb|EEU51961.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL+       +++++D+ ++EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK-DLTVYNLLLLDVMMREISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + +++D +    P+I +TA   + D       G + YISKP S+   +  +K  +  
Sbjct: 64  MARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122


>gi|222159810|gb|ACM47283.1| response regulator VanRD [Enterococcus faecium]
          Length = 232

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K+++V+D +    L    ++  GY   +  NG +AL+     + D+ I+DI L ++ 
Sbjct: 1   MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +I ++I+E       PVI +TA    GD+        + YI+KP +    +  +K  +
Sbjct: 61  GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEMVARVKAQL 116

Query: 121 GE 122
            +
Sbjct: 117 RQ 118


>gi|261369014|ref|ZP_05981897.1| phosphate regulon response regulator PhoB [Subdoligranulum
           variabile DSM 15176]
 gi|282568888|gb|EFB74423.1| phosphate regulon response regulator PhoB [Subdoligranulum
           variabile DSM 15176]
          Length = 230

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 60/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           + IVED+    +L +  ++T+GY A    +G       R+  PD++I+D+ L +  G +I
Sbjct: 2   IYIVEDDASIRELEQYALQTNGYEATGCEDGASFWAALRESAPDLVILDVMLPDEDGYQI 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++ D   + IPVI VTA   + D  +    G + Y+ KP  +  F+  +K  +  
Sbjct: 62  LNKLRADPATRTIPVIMVTAKTSEIDVVKGLDHGADDYLCKPFGIMEFISRVKAVLRR 119


>gi|167757089|ref|ZP_02429216.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402]
 gi|167703264|gb|EDS17843.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402]
          Length = 223

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D    +++     ++ GY+     +  EAL+      PD+I++DI + E++G
Sbjct: 1   MYKILMIDDERDILEMLALQFQSEGYLVYLANDANEALKQL-SVLPDLILLDINMPEMNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+   I+E       P+I +TA     D       G + YI+KP S+      ++ ++ 
Sbjct: 60  LELCTMIREHV---NCPIIFLTARISSRDMINGLMLGGDDYITKPFSMDELFARVQAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 230

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+       +  +   GY     R G E L LAR  +  ++I+D+ L  ++GL++
Sbjct: 6   ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVMLPGMTGLDL 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++ +    ++PV+ +TA +   D+    K G + Y++KP +    +  I+  +  
Sbjct: 66  CQSLRAEGG--QVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRR 121


>gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630]
 gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59
           +  V+I++D++    L +  +E     A+    G E L L  +++    ++I+DI + +I
Sbjct: 1   MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G ++ K+I+E      IPVI +TA   + D+    + G + Y++KP S++  M  +   
Sbjct: 61  DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 117

Query: 120 IGE 122
           I  
Sbjct: 118 IRR 120


>gi|20093163|ref|NP_619238.1| response regulator receiver [Methanosarcina acetivorans C2A]
 gi|19918506|gb|AAM07718.1| response regulator receiver [Methanosarcina acetivorans C2A]
          Length = 123

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/121 (46%), Positives = 83/121 (68%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++IVEDN +NM+L  DL+E  G+   +  +G++ALE   + K D+I++D+QL ++ G
Sbjct: 3   MKEILIVEDNPMNMELILDLLEFYGHRVTEAEDGIKALERLAEKKFDIILLDMQLPKMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+  +IK++    +IPVIAVTA AMKG EE   + GC  YISKPI +  F   I KY+G
Sbjct: 63  LEVLDRIKKNPATADIPVIAVTAHAMKGSEEHFIEMGCVDYISKPIDIHRFRSLIDKYLG 122

Query: 122 E 122
           E
Sbjct: 123 E 123


>gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K+++V+D+   ++L    ++  GY  +   NG EAL       PD  ++I+D+ +  +SG
Sbjct: 2   KILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKL-STTPDIALMILDVMMPNMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ K++++DS   +IP+I V+A     D+ +    G + Y+SKP +    M  ++  + 
Sbjct: 61  IDVVKEVRKDS---DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L    ++ +G       +G            D+I++D+ L    GL 
Sbjct: 6   HILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLMLPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++  S   +IP++ +TA   + D     + G + Y+ KP S    +  IK  +  A
Sbjct: 66  LCRNLRAKS---DIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRRA 122


>gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++I+ED E   +   + +   GY      +G E LEL      D+I++D+ L  I GLE
Sbjct: 2   HILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I +Q +  +     PV+ ++A     D+      G   Y++KP         I+     
Sbjct: 62  ILRQFRTFNT--NTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRR 118


>gi|253569365|ref|ZP_04846775.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251841384|gb|EES69465.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1339

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE  ++   + +    +     +NG EALE+ R  + D++I DI +  ++G E+ 
Sbjct: 1083 LLVEDNETMLEFMSERL-LEVFTVETAKNGQEALEVLRSRRIDLVISDIMMPVMNGWELC 1141

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K+IK D +L  IPVI +TA      +    K G EAY+ KP S +     I   +
Sbjct: 1142 KEIKSDMDLSHIPVIFLTAKNDIDSKINGLKIGAEAYVEKPFSFNYLKTQIVSLL 1196


>gi|229004154|ref|ZP_04161955.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757015|gb|EEM06259.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 210

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 14  NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73
             +L    ++  GY   +  NG +AL +      D +I+DI + ++ G+ + K+I++   
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIMMPQMDGISVCKEIRK--- 57

Query: 74  LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 58  TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106


>gi|153870034|ref|ZP_01999517.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp.
           PS]
 gi|152073497|gb|EDN70480.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp.
           PS]
          Length = 448

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 61/120 (50%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++V+D      L ++++E  G+     ++G  A EL  +  PD+I++DI + +I 
Sbjct: 1   MSAHILVVDDEPDIRSLMKEILEDEGFTVSVAQDGKTARELRSEKHPDLILLDIWMPDID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+ + K+ +E     +  VI ++            + G   +I KP+S++  + TIK+ +
Sbjct: 61  GISLLKEWRESGMTLDSQVIMISGHGTVETAVEATRLGAYDFIEKPVSIAKLLLTIKRAL 120


>gi|148653952|ref|YP_001281045.1| CheA signal transduction histidine kinase [Psychrobacter sp. PRwf-1]
 gi|148573036|gb|ABQ95095.1| CheA signal transduction histidine kinase [Psychrobacter sp. PRwf-1]
          Length = 1609

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 66/116 (56%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++IV+D+    K+   +++  GY A   R+G+EA+E+ +  +PD++++DI++  + G E+
Sbjct: 1493 ILIVDDSVTVRKVTARMLQRQGYQAHVARDGVEAVEMLQTLRPDLMLLDIEMPRMDGFEV 1552

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               ++ +  +  +P+I +T+ +     +R  K G  AY+ KP   +  +  I+  I
Sbjct: 1553 ATHVRHNQAISHLPIIMITSRSGDKHRQRALKIGVNAYLGKPFQEAKLVALIQNLI 1608


>gi|29348269|ref|NP_811772.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340172|gb|AAO77966.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1337

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE  ++   + +    +     +NG EALE+ R  + D++I DI +  ++G E+ 
Sbjct: 1081 LLVEDNETMLEFMSERL-LEVFTVETAKNGQEALEVLRSRRIDLVISDIMMPVMNGWELC 1139

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K+IK D +L  IPVI +TA      +    K G EAY+ KP S +     I   +
Sbjct: 1140 KEIKSDMDLSHIPVIFLTAKNDIDSKINGLKIGAEAYVEKPFSFNYLKTQIVSLL 1194


>gi|330878943|gb|EGH13092.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 254

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+          +    +      +     +L RQ   DV+++D+ L +  G E
Sbjct: 12  RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++        IPVI +TA     D  R    G + Y++KP      +  I   +  
Sbjct: 72  LCSRLHRRE---NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRR 127


>gi|324325033|gb|ADY20293.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 896

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|260173200|ref|ZP_05759612.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
 gi|315921474|ref|ZP_07917714.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695349|gb|EFS32184.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1315

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 65/116 (56%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +IVED +   +  +  ++       Q  NG+ ALE+ +Q +PD+I+ D+ + +++G ++ 
Sbjct: 1060 LIVEDKQDLREFLKSALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            K+IKE+  +  IPVI +TA A    +    K G +AY+ KP  + + +  I+  + 
Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175


>gi|228990402|ref|ZP_04150367.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768928|gb|EEM17526.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 210

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 14  NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73
             +L    ++  GY   +  NG +AL +      D +I+DI + ++ G+ + K+I++   
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIMMPQMDGISVCKEIRK--- 57

Query: 74  LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++P+I +TA   + +     + G + YI KP S    +  ++  +  
Sbjct: 58  TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106


>gi|118476618|ref|YP_893769.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196044360|ref|ZP_03111596.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225862944|ref|YP_002748322.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|229183305|ref|ZP_04310534.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
 gi|118415843|gb|ABK84262.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196024999|gb|EDX63670.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225788896|gb|ACO29113.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|228600175|gb|EEK57766.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
          Length = 896

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +  +  R  +   G+     ++G  AL  A     D++++D+ L +  GL+
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPYDLVLLDLGLPKRDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      ++PV+ VTA     D  +    G + Y+ KP  L      ++  I  
Sbjct: 62  VLRTLRTRGH--QLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118


>gi|78063615|ref|YP_373523.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971500|gb|ABB12879.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 223

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        R  +  + Y      NG + L LA     D++++D+ L E+ G E
Sbjct: 2   RILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPEMDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+++     ++ PV+ +TA     D+    + G + Y+ KP + + F+  I+  +  A
Sbjct: 62  VLKRLRAQ---KQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRA 118


>gi|13471380|ref|NP_102946.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14022122|dbj|BAB48732.1| probable two-component response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 255

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IVED+    ++  + +  +G I     NG       R  K D+I++DI L   +GL 
Sbjct: 24  HILIVEDDIEIARMLGETLTENGMIVEIAGNGARMNAALRNQKFDLIVLDIMLPGENGLS 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +    +P++ +TA   + D     + G + Y++KP S       I+  +  
Sbjct: 84  ICRRLRAHT---NVPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRR 139


>gi|15608173|ref|NP_215549.1| two component transcriptional regulator TRCR [Mycobacterium
           tuberculosis H37Rv]
 gi|31792225|ref|NP_854718.1| two component transcriptional regulator TRCR [Mycobacterium bovis
           AF2122/97]
 gi|121636963|ref|YP_977186.1| two component transcriptional regulator trcR [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148660816|ref|YP_001282339.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|148822242|ref|YP_001286996.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis F11]
 gi|167968534|ref|ZP_02550811.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|215402850|ref|ZP_03415031.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|215410638|ref|ZP_03419446.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426317|ref|ZP_03424236.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T92]
 gi|215429895|ref|ZP_03427814.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|215445184|ref|ZP_03431936.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|218752706|ref|ZP_03531502.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis GM
           1503]
 gi|219556903|ref|ZP_03535979.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T17]
 gi|224989435|ref|YP_002644122.1| two component transcriptional regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253799935|ref|YP_003032936.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363948|ref|ZP_04979994.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254550019|ref|ZP_05140466.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260185946|ref|ZP_05763420.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200062|ref|ZP_05767553.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T46]
 gi|260204253|ref|ZP_05771744.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           K85]
 gi|289442456|ref|ZP_06432200.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T46]
 gi|289446614|ref|ZP_06436358.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289569014|ref|ZP_06449241.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T17]
 gi|289573673|ref|ZP_06453900.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis K85]
 gi|289744771|ref|ZP_06504149.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|289749566|ref|ZP_06508944.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T92]
 gi|289753095|ref|ZP_06512473.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|289757118|ref|ZP_06516496.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|289761171|ref|ZP_06520549.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis GM 1503]
 gi|294995222|ref|ZP_06800913.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           210]
 gi|297633562|ref|ZP_06951342.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           4207]
 gi|297730547|ref|ZP_06959665.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           R506]
 gi|298524531|ref|ZP_07011940.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775170|ref|ZP_07413507.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu001]
 gi|306781915|ref|ZP_07420252.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu002]
 gi|306783731|ref|ZP_07422053.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu003]
 gi|306788086|ref|ZP_07426408.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu004]
 gi|306792419|ref|ZP_07430721.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu005]
 gi|306796821|ref|ZP_07435123.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu006]
 gi|306802708|ref|ZP_07439376.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu008]
 gi|306967087|ref|ZP_07479748.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu009]
 gi|306971277|ref|ZP_07483938.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu010]
 gi|307079006|ref|ZP_07488176.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu011]
 gi|307083567|ref|ZP_07492680.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu012]
 gi|313657876|ref|ZP_07814756.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           V2475]
 gi|1869995|emb|CAB06846.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium
           tuberculosis H37Rv]
 gi|2979514|gb|AAC06144.1| response regulator homolog TrcR [Mycobacterium tuberculosis]
 gi|31617813|emb|CAD93922.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium bovis
           AF2122/97]
 gi|121492610|emb|CAL71078.1| Two component transcriptional regulator trcR [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134149462|gb|EBA41507.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504968|gb|ABQ72777.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|148720769|gb|ABR05394.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis F11]
 gi|224772548|dbj|BAH25354.1| two component transcriptional regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253321438|gb|ACT26041.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415375|gb|EFD12615.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T46]
 gi|289419572|gb|EFD16773.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538104|gb|EFD42682.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis K85]
 gi|289542768|gb|EFD46416.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T17]
 gi|289685299|gb|EFD52787.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|289690153|gb|EFD57582.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T92]
 gi|289693682|gb|EFD61111.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|289708677|gb|EFD72693.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis GM 1503]
 gi|289712682|gb|EFD76694.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|298494325|gb|EFI29619.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216318|gb|EFO75717.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu001]
 gi|308325370|gb|EFP14221.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu002]
 gi|308331512|gb|EFP20363.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu003]
 gi|308335318|gb|EFP24169.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu004]
 gi|308339126|gb|EFP27977.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu005]
 gi|308342797|gb|EFP31648.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu006]
 gi|308350622|gb|EFP39473.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu008]
 gi|308355255|gb|EFP44106.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu009]
 gi|308359209|gb|EFP48060.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu010]
 gi|308363111|gb|EFP51962.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu011]
 gi|308366776|gb|EFP55627.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu012]
 gi|323720534|gb|EGB29616.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904738|gb|EGE51671.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis W-148]
 gi|328459679|gb|AEB05102.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 4207]
          Length = 257

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L +  +   G+      +G EA+    +  PDV+++DI L ++ GLE
Sbjct: 33  RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 92

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++E       P + +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 93  ILRRVRESDVY--TPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 150


>gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10]
 gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Antiqua]
 gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Nepal516]
 gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Pestoides F]
 gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola]
 gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis KIM 10]
 gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola]
 gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D106004]
 gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D182038]
 gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED     +L  D ++ +GY      NG E +   RQ  P +I++D+ L    G+ +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+      +IP++ VTA   + D     + G + YI KP S    +  +K  +  
Sbjct: 74  CREIR---RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128


>gi|330466349|ref|YP_004404092.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
 gi|328809320|gb|AEB43492.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
          Length = 1183

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+DN    +    L+  + +  +   +G+EAL +A +   D+++ D+ +  + G  
Sbjct: 586 RILVVDDNPDLREHVARLLGPT-WDVVTATDGVEALRVATEVAFDLVLTDVMMPRLDGFG 644

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +   ++ D   + +P++ ++A A   +E      G + Y++KP S    +  ++ 
Sbjct: 645 LVAALRADPRTRYVPIVLLSARAGSAEEVAGLSVGADDYLTKPFSGQELIARVRA 699


>gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 267

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   +      +   G++    ++G  A+E A   +PD++++D+ L    GL
Sbjct: 41  RRVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGL 100

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 101 EVCRRVQAH---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 157


>gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+ +  +  R  +   G+      +G  AL  A     D++++D+ L    GL+
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGLD 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++       +PV+ VTA     D  +    G + Y+ KP  L      ++  I  
Sbjct: 62  VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118


>gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1370

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGLE 63
            ++V+D+++N ++ + ++E  G I     +G +AL+  RQ      VI+MD+Q+  + G E
Sbjct: 1030 LVVDDSQINCEVAQRILEGEGAIVELAHDGEQALQRLRQEPSRFQVILMDVQMPNMDGYE 1089

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T+Q++ D  L  +PVIA+TA A +  +E     G   +I+KP  +   +  I++++
Sbjct: 1090 ATRQLRADPRLAALPVIALTAGAYRQQQELALSSGMNGFIAKPFQVENLIAIIRQFL 1146



 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 7/126 (5%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQEIS 60
            +V+I +D+EL  +    ++   G+      NG +AL  A        DV+++D ++ ++ 
Sbjct: 881  RVLIADDHELARRNLTTIVSGFGWQVEAVANGTDALAAAATPEHEDFDVLLLDWRMPDLD 940

Query: 61   GLEITKQIKEDSELQEIPVI-AVTAFAMKGDEER---IRKGGCEAYISKPISLSIFMETI 116
            G  +  +I+  +     P+I  V+A+  +  EER         +A ++KP++      TI
Sbjct: 941  GFSVAHRIRAQTTSDRQPIIVMVSAYERRLLEERNQGAIDVDVDALMTKPVTAPTLYRTI 1000

Query: 117  KKYIGE 122
               +  
Sbjct: 1001 ATLLAR 1006


>gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 223

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++V+D +   ++ +   E  G+  ++  +G++A+E  +++  DVI+MDI +  + G
Sbjct: 1   MFRILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKVKENDFDVIVMDIMMPRLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               K+IK+   +++IPV+ ++A   + D+    + G + Y++KP S    M  +   + 
Sbjct: 61  FSSYKEIKK---IKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVN 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|240169874|ref|ZP_04748533.1| two component transcriptional regulator TrcR [Mycobacterium
           kansasii ATCC 12478]
          Length = 254

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D      L +  +   G+      NG EA+    +  PDV+++DI L ++ GL+
Sbjct: 30  RVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAIAKFERISPDVLVLDIMLPDVDGLQ 89

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I ++++E  +    P + +TA     D       G + Y++KP SL   +  ++  +  +
Sbjct: 90  ILQRVRESDDY--TPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRS 147


>gi|237737656|ref|ZP_04568137.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
 gi|229419536|gb|EEO34583.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
          Length = 232

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K ++I+ED+    ++ +  +E  GY+    ++G E LE A+  + D+I++D+ L EISG
Sbjct: 1   MKNILIIEDDLRIRRILQLELEHEGYLVSLAKDGKEGLEKAKLIRYDLILLDLMLPEISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+++++S   ++P+I +TA      +  +   G + YI+KP ++      ++  + 
Sbjct: 61  EEVCKELRKNS---DVPIIVLTAKENIRSKVELLDMGADDYITKPFNIEELFARMRVALR 117


>gi|229189197|ref|ZP_04316221.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
 gi|228594241|gb|EEK52036.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
          Length = 896

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E L++ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGIECLDILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLSEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|298530005|ref|ZP_07017407.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509379|gb|EFI33283.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 310

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
           + V+IV+D   N+     LI+   Y  +   +G  ALE+A   + PD+I++D+ + E+ G
Sbjct: 10  RSVLIVDDQPDNIHALGKLIKDE-YRIMAATSGARALEIAESDNPPDLILLDVMMPEMDG 68

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++K + +   IPVI VTA     DEE     G   YISKP   +I    IK  +
Sbjct: 69  YEVCRRLKRNEKTNSIPVIFVTAMDSAEDEETGFNLGAVDYISKPFKPTIVRARIKNQM 127


>gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++ +D+ + +   R  +E  G+ AL  R+G EAL L  +H+PD++ +DI + ++ G E
Sbjct: 2   TILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIMMPQVDGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      ++PV+ ++A + + D     + G + +I KP      +  I+  +  
Sbjct: 62  VCRRVRAAD--AQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRR 118


>gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 887

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 1/115 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N K+   L++  GY A   +NG++ LE  RQ   DVI+MD+Q+ E+ GL 
Sbjct: 763 RILLAEDNAVNQKVALHLLKRLGYGADVAKNGIQVLEALRQQSYDVILMDVQMPEMDGLT 822

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T+QI+  S L +  +IA+TA A++GD E   + G + Y+SKPI L   +E ++K
Sbjct: 823 ATQQIRR-SGLPQPRIIAMTANAVQGDREACLEAGMDDYVSKPIRLPDLVEALQK 876



 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    L R+ +E+ GY   +  NG + L+  +Q +PD++++D  +  + G   
Sbjct: 13  ILVVDDAKTVRALLREHLESVGYQLAEAVNGEDCLKSFQQLRPDIVLLDAVMPGMDGFNC 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             +++   +  + P++ +T        ER    G   YI+KPI  ++    + + I
Sbjct: 73  CARLRRLPQGMDTPILMITGLDDPSSVERAFAAGATDYITKPIHWAVLRMRVSRLI 128



 Score = 90.2 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           K+++IV+DN    K+     +  G +      G EAL   +Q    D+ I+D +L ++ G
Sbjct: 620 KRLLIVDDNPTYRKILSLYSQFWGTLPYTFAAGSEALRRLQQQPGFDLAIIDDRLADMDG 679

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           L + +QI++  +   +P+I +T  + +       + G    ++KP+  S   + + K +
Sbjct: 680 LSLVEQIRQLPQTATLPLIFLTNTSQRERVASHLQNGL--ILTKPLRQSQLQDALLKLL 736


>gi|167761581|ref|ZP_02433708.1| hypothetical protein CLOSCI_03992 [Clostridium scindens ATCC 35704]
 gi|167660724|gb|EDS04854.1| hypothetical protein CLOSCI_03992 [Clostridium scindens ATCC 35704]
          Length = 226

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++  +D    + L +D  E   Y  ++  NGME LE   Q+ PD+I++D+ +  + G 
Sbjct: 5   KKMLAADDEPGIIHLLKDYFEMQDYQVIEAENGMEVLEKISQN-PDIILLDVNMPGLDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++I+        P++ +TA   + D  +    G + YI KP S+      ++ ++  
Sbjct: 64  EVCERIRAHV---SCPILFLTAKIEEADRIKGLMLGGDDYILKPFSIEELGARVEAHLRR 120


>gi|110833129|ref|YP_691988.1| osmolarity response regulator [Alcanivorax borkumensis SK2]
 gi|110646240|emb|CAL15716.1| DNA-binding response regulator OmpR [Alcanivorax borkumensis SK2]
          Length = 236

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L +  +E +GY      +  +      +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++E   +  +P+I +TA     +       G + Y+ KP +       I+  +  
Sbjct: 67  ICRRLREAENI--MPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRR 123


>gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     +  R  +  +G++     NG++   LA     D+I+MDI L ++ G  
Sbjct: 2   KLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPDLDGWR 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++E       PV+ +TA     D  +  + G + Y+ KP + S  +  ++  +  
Sbjct: 62  LLGSLREAGNA--TPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRR 118


>gi|119718004|ref|YP_924969.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538665|gb|ABL83282.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 297

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           + M+VED      +    +E +GY      +G+ A++LAR+  PDV+I+D+ L  I G+E
Sbjct: 65  RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++      +  V+ +TA + + D       G + Y++KP S    +  ++  +  
Sbjct: 125 VCRRLR---TFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRR 180


>gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 935

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 79/119 (66%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
           ++++ EDNE N  L ++++E +GY      NG +A+E+ R  ++ ++I+MD+Q+  + G 
Sbjct: 695 RILLTEDNEANQLLIKEVLEKAGYSVDVAGNGKQAIEMVRNFNQYNLILMDMQMPIMDGY 754

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E TK +++  E  +IP++A+TA  M+GDEE+  + GC+ ++ KP+  S  +E ++ ++G
Sbjct: 755 EATKALRQ--EGYKIPIVALTAHTMQGDEEKTIEAGCDGFLGKPVRQSDLLEIVRYHLG 811


>gi|229154672|ref|ZP_04282787.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
 gi|228628620|gb|EEK85332.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
          Length = 883

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E L++ + +   D+I+MDI +  + G
Sbjct: 763 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLDILKNNTNIDLILMDIMMPNMDG 822

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 823 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881


>gi|254468934|ref|ZP_05082340.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207087744|gb|EDZ65027.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 237

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I++D+     L +  ++  G+      +G +  ++ ++  PD+II+D+ L + +
Sbjct: 1   MKKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDEN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL+I K+++ +    +IP+I +TA   + D     + G + Y+ KP +    +  I    
Sbjct: 61  GLDICKRLRVNKI--KIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIF 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|197103549|ref|YP_002128926.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196476969|gb|ACG76497.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 238

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+ +V+D+E  +      +E+ G+      +G   L       PD+ I+D+++  + G
Sbjct: 1   MAKITLVDDDENIVTSVSLALESHGHAVKAYYDGASGLAALENDPPDLAILDVKMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++      ++PVI +T+   + DE      G + YI KP S  + +E +K  + 
Sbjct: 61  MEVLRRLR---RTSDVPVIILTSKDEEIDEILGFNLGADDYIHKPFSQRLLIERVKAVLR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 240

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED           I   G+ A    +G  A++ A   +PD++IMDI L  + GL
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPVMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I  +   + +PV+ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 73  EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129


>gi|160879024|ref|YP_001557992.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427690|gb|ABX41253.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 236

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              V+IVED+   ++     +   GY   Q  NG + LE+ +     + I+DI +  + G
Sbjct: 3   SYHVLIVEDDREILEGIGIYLRNQGYTVFQAENGKKGLEIMQNETIHLAIVDIMMPVMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +T +++E+ +    PVI ++A + + D+      G + Y++KP +    M  +  ++ 
Sbjct: 63  ITMTMKLRENFDF---PVIMLSAKSEEIDKVTGLNIGADDYVTKPFTPMELMARVNSHLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 226

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++++ED+    K  R   E++G+  +   +G  A++  +   P  +++D++L   SG
Sbjct: 1   MDRILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQATSPRAVLLDLRLPGKSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I ++I+  S    +P++ ++A +   D+  + + G + Y++KP S    +  ++  + 
Sbjct: 61  QDICREIRGFS--PNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTALR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 223

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +     +  +GY+  +  +G E   L      D +++DI L ++ G+ 
Sbjct: 2   RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +  + +     +PV+ +TA     D+ +    G + Y++KP  L   +  I+  +  +
Sbjct: 62  VLEAWRRNDRT--MPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRRS 119


>gi|17549382|ref|NP_522722.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431635|emb|CAD18312.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 219

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L  D +  + Y      +G  A++  R+  P+++++D+ L    GLEI
Sbjct: 2   ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 61

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++      ++P++ VTA   + D     + G + YI KP S    +  IK  +  
Sbjct: 62  CREVRA---FSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRR 116


>gi|269103903|ref|ZP_06156600.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163801|gb|EEZ42297.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 239

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      NG +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + +  +P++ +TA   + D     + G + Y+ KP +    +  I+  +  
Sbjct: 66  ICRRLRNANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRR 122


>gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
 gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
          Length = 242

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++VED           I   G+ A    +G  A++ A Q +PD++IMDI L  + GL
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAAAQLRPDLVIMDIMLPVMDGL 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E TK+I  D   + +PV+ +TA   + D+      G + Y++KP S+   +   K  +  
Sbjct: 73  EATKRIVAD---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129


>gi|167949354|ref|ZP_02536428.1| Signal transduction histidine kinase-like protein [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 179

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++VEDN  N  + + ++E  G       NG EA+    Q   D++ MD Q+  + G 
Sbjct: 50  ARVLVVEDNVTNQAVAQGMLEKFGVHIDLVANGQEAITALEQLPYDLVFMDCQMPVMDGY 109

Query: 63  EITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + T++I+      +   IPVIA+TA AM+GD ++  + G + +I+KP+        ++++
Sbjct: 110 DATRRIRDPQSSVKDHNIPVIAMTANAMQGDRDKCIEAGMDDHIAKPVDPRKLRRALEQW 169


>gi|150007937|ref|YP_001302680.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|255013375|ref|ZP_05285501.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
 gi|262381501|ref|ZP_06074639.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|149936361|gb|ABR43058.1| two-component system sensor histidine kinase, with a response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
 gi|262296678|gb|EEY84608.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 374

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 64/114 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D   N+ L + +++  GY  L   +G +AL +A +  P++I++DI + E+ G E
Sbjct: 9   KVLIVDDVPTNVMLVQAILKKEGYTLLTCDSGTKALRIANEKHPNLILLDIMMPEMDGYE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + + +K + E  +IPVI ++A +      +  + G   Y++KP      ++ + 
Sbjct: 69  VLQHLKSNPETTDIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122


>gi|77164200|ref|YP_342725.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|76882514|gb|ABA57195.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
          Length = 231

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++ +D+     + +  +E  G+       G  AL  AR    D+ ++D+ + +++G
Sbjct: 1   MNRILLADDDIELCGMLKQYLEVEGFQVGMAHGGESALNQARTGGYDLAVLDVMMPQLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ +++++DS    +PV+ +TA     D     + G + Y+ KP +  + +  I+  + 
Sbjct: 61  FDVLRELRKDSL---VPVLMLTARGEDVDSIIGLELGADDYLPKPCNPRVLVARIRAILR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 221

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++EDN    +L R+ +    +       G E + L +++  D++++D+ L +I G
Sbjct: 1   MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I K ++  S   ++P+I +T    +  E +  + G + YI+KP   ++F++ ++  + 
Sbjct: 61  YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332527956|ref|ZP_08403990.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332112530|gb|EGJ12323.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 234

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 58/123 (47%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++++D+     +  D +  +G+      +     E  R    D +++D+ L +  
Sbjct: 1   MTSRLLLIDDDSRLTTMVGDYLRRNGFEVDTAGSLAAGREQLRHRAYDALLLDLMLPDGD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++T++++ D+  + +P++ +TA     D     + G + Y+ KP      +  +K  +
Sbjct: 61  GLDLTRELRSDARTRRLPLLMLTARGEPMDRIVGLELGADDYLPKPFEPRELLARVKALL 120

Query: 121 GEA 123
             A
Sbjct: 121 RRA 123


>gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 227

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +     ++  G+     ++G E L + R+   DV I+D+ L ++SG+E
Sbjct: 2   RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGME 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++   E +  PV+ +TA +   D+    K G + Y+ KP  +   +  +   +  A
Sbjct: 62  LIKALR--DEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRA 119


>gi|283850700|ref|ZP_06367987.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573943|gb|EFC21916.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 651

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDN +N    ++L+E  G+  +    G  ALE  R+   D I+MDIQ+ E+ GLE 
Sbjct: 372 ILLAEDNPINQLYVQELLEMDGHEVVVAHTGRRALEALRRKYFDAILMDIQMPEMDGLEA 431

Query: 65  TKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T+ I+ D        IP++A+TA A+KGD E   + G   Y+SKP+S +     + + +G
Sbjct: 432 TRAIRTDQTGDFDPNIPIVALTAHALKGDRETFLRAGMNEYLSKPVSPAGLEAALMRAVG 491

Query: 122 EA 123
           +A
Sbjct: 492 DA 493


>gi|269960026|ref|ZP_06174403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835325|gb|EEZ89407.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1187

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 70/118 (59%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ +N +L RD++   G +     +G EALEL  +H  D ++MD Q+  + G 
Sbjct: 863 KRILVVEDHRINQELVRDVLVNVGCVVQIANHGKEALELLVKHSFDAVLMDCQMPIMDGY 922

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + T+ I++  +L E+P+IA+TA  +  DE++    G    + KPI + +   T+ K +
Sbjct: 923 QATQNIRQKLKLIELPIIALTANTLAEDEKKALDAGMNCVLHKPIDIPLLKSTLAKLL 980


>gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++VED+ L  +     +   G    Q  +G +AL +      DV+++D+ L  + 
Sbjct: 1   MTVRVLLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLMLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL +  +++      ++PVI +TA A   D     + G + Y++KP+        I+  +
Sbjct: 61  GLSVCHELRVRG---DLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|254786056|ref|YP_003073485.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237685209|gb|ACR12473.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 557

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IV+DN +N+++   L+    +      +GM A+E   + + D+++MDIQ+ E+ GL
Sbjct: 437 KRLLIVDDNSINLEVADWLLSDLQFEVETCNSGMAAIERLDEKRFDLVLMDIQMPEMDGL 496

Query: 63  EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             T+ I++ S + +  P++A+TA A++ D E+    G   + +KP+      E +KK + 
Sbjct: 497 TTTRHIRQHSVKNKHTPIVAMTAHALEEDREKSLASGMNDHATKPLDPDALAEKLKKILS 556

Query: 122 E 122
           +
Sbjct: 557 K 557


>gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM
            5476]
 gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM
            5476]
          Length = 1068

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 75/124 (60%), Gaps = 5/124 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59
            K +++VEDN+LN ++  +L+  +G      ++G+EA+EL  Q      D+I+MDIQ+  +
Sbjct: 942  KHLLLVEDNQLNREIAVELLRITGAEVECAKDGIEAVELFSQSPVEHYDLILMDIQMPRM 1001

Query: 60   SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             GLE T+QI++    +   +P++A+TA A   DE + +  G  A++SKP+ + I    +K
Sbjct: 1002 DGLEATRQIRKLDRPDAGSVPIVAMTANAFAEDEHKSKAAGMNAHLSKPLDIKILFAQMK 1061

Query: 118  KYIG 121
             ++ 
Sbjct: 1062 VFLR 1065



 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58
           KV+ V+D+   +     L+   G       NG  A+        RQ   D+  +  +L +
Sbjct: 803 KVLAVDDDPDTISYIHSLLHRMGVQVECAENGNLAVSQVRDAHSRQEDFDICFVSCRLPD 862

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G E T++I E    +   V+ +TA+     E+   + G    ++KP+  S   +TI  
Sbjct: 863 LDGFETTRRIHEIVPNETTAVL-ITAYDAAEIEKEAAQSGASGVLAKPLFASTITQTISS 921

Query: 119 Y 119
            
Sbjct: 922 L 922


>gi|196037659|ref|ZP_03104970.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
 gi|196031901|gb|EDX70497.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
          Length = 309

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +    + +E SG+  L   +G  AL +A +  PD+I++D  +  + G + 
Sbjct: 13  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDIILLDAVMPGMDGFDT 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++K ++ + ++PV+ +T         R  + G   Y++KPI++      I+ ++  A
Sbjct: 73  CTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 131


>gi|188588979|ref|YP_001921296.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499260|gb|ACD52396.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 233

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++I +DN+   +     ++      +   +G EALE     KPD++I+D+ + +I G 
Sbjct: 5   KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K+I++   +  +P+I +TA   + D     + G + YI KP S    +  IK     
Sbjct: 65  EVCKEIRK---ISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRR 121


>gi|296102332|ref|YP_003612478.1| OmpR family transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056791|gb|ADF61529.1| OmpR family transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 246

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L  D +  SGY A    NG E   +  +   D++++D+ +    GL 
Sbjct: 6   HILVVDDDRDIRELIVDYLVKSGYRASDAANGKEMRAVLDKQHVDLVVLDVMMPGDDGLT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   + +++P++ +TA   + D     + G + Y+ KP      +  IK  +  
Sbjct: 66  LCRGLRS-GKHKDLPILMLTARNEETDRILGLEMGADDYVVKPFVARELLARIKAILRR 123


>gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
 gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
          Length = 243

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+ +VED+     L +  ++  GY  +   +G  ALE   +H  D +I+D+ L  + GL
Sbjct: 8   KKIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLMLPGVDGL 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI ++I++ S    +PVI ++A   +       + G + Y++KP S+   M  +K     
Sbjct: 68  EICRRIRQMSFY--LPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRR 125


>gi|265752871|ref|ZP_06088440.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_33FAA]
 gi|263236057|gb|EEZ21552.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_33FAA]
          Length = 1357

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++EDNE        L     Y   +  NG E  ++A    PD+II DI +    G    
Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGGDVAMSKIPDLIISDIMMPVKDGFTCC 1166

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E      IP++ +TA A   D  +  K G + Y+ KP +  +    ++  I
Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221


>gi|256751275|ref|ZP_05492155.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|307266238|ref|ZP_07547780.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|320115595|ref|YP_004185754.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|326390556|ref|ZP_08212112.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|256749830|gb|EEU62854.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|306918768|gb|EFN49000.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|319928686|gb|ADV79371.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|325993381|gb|EGD51817.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 310

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 71/117 (60%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IV+DN+L  K+ +D++E +GY  L+ ++G EAL++ R   PD++I+DI +  ++G 
Sbjct: 4   RNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIYRNKLPDMVILDIVMPGMNGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           ++ + ++++ E   +P+I +T+     ++ +  + G + Y+ KP +    +  +   
Sbjct: 64  DLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNNL 120


>gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407]
          Length = 226

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D+     P++ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 61  GLRVLQRLRADNNA--TPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|255530419|ref|YP_003090791.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255343403|gb|ACU02729.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 1334

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN          +    +  LQ  NG EAL++ ++    +II DI +  + G+ +
Sbjct: 1076 ILVVEDNTEIRTFIAGKLAKD-FEVLQAGNGQEALDILKEKSTHLIISDIMMPVLDGIAL 1134

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +KE+ E   IP+I +TA      +    + G +AY+ KP S    +  +   +
Sbjct: 1135 CRAVKENLEYAHIPIILLTAKNTLQSKIEGLEVGADAYLEKPFSPDHLLTQVSNLL 1190


>gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 234

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+D    ++L    ++  G+      +G EAL +AR+  PD  IMD+ +  + G E
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVMMPGMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  +++ +    + PV+ +TA             G + Y++KP SL   +  ++  +  
Sbjct: 68  LLGKLRAEGL--DGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124


>gi|218245994|ref|YP_002371365.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|257059045|ref|YP_003136933.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|218166472|gb|ACK65209.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|256589211|gb|ACV00098.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 308

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 66/116 (56%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D   N++L  ++++T GY       G +ALE  +  KPD+I++D+ + EI+GLE+
Sbjct: 11  ILVVDDISKNVQLLIEILDTVGYATTFAIGGKQALERVKSVKPDLILLDLMMPEINGLEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K +K D     IP++ +TA   K    +  + G   Y++KP  +   +  +K ++
Sbjct: 71  CKILKSDEATANIPILFLTASNDKEHLIKAFEQGAVDYVTKPFKVPELLARVKTHV 126


>gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
 gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
          Length = 1311

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEISG 61
            +V++VEDNE+N ++ R+++E  G       NGM AL + R + P  D I+MD+Q+ E+ G
Sbjct: 965  RVLLVEDNEINQQIAREVLEDVGVTVAIADNGMIALSMLRGNGPLPDAILMDLQMPELDG 1024

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E T+ I+ D  L  IP+IA+TA     + +R    G   +++KP+ +   ++T++++ G
Sbjct: 1025 YETTRWIRSDDRLAHIPIIAMTAHVTDDERKRCLAAGMVDHVAKPVDVRQLLDTLERWTG 1084



 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEAL-----ELARQHKPDVIIMDIQLQ 57
           + +IVEDN +   +  D ++   +       +G  AL        R    D++++D ++ 
Sbjct: 814 RTLIVEDNAVARAVLADTLKGLRFTDVEAVGDGPAALGAFAEAQLRGQPFDLVLVDWKMP 873

Query: 58  EISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            + G+   +++KE S    +P ++ VTA +     E  R+ G    + KP+++S+ +++I
Sbjct: 874 GMDGIATARRLKELSTPGAVPSILMVTAHSRAEVVEHAREVGILKVLVKPVNVSMLVDSI 933


>gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 232

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED    + +    +   G       +G+  LE+A +H  D+II+DI L  ++G++
Sbjct: 2   KILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHDFDLIILDIMLSGMNGIQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++ +    +PV+ +TA +   +       G + Y+ KP   +     I+  +  +
Sbjct: 62  VCREIRKGNN--NVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLVRRS 119


>gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01]
 gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01]
          Length = 1058

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+DN +N K+    +  +G+      NG EA+E  +Q++  +I+MD  +  + G E
Sbjct: 775 KILVVDDNTVNQKIAGLHVTKAGFDFDVAVNGQEAVEQFQQNQYSLILMDCMMPVMDGFE 834

Query: 64  ITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I++          IP+IA+TA  +  D ++    G + Y+ KP    +  E + K 
Sbjct: 835 ATQIIRQIEVKEKRAFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKARLLKEKLDKA 894

Query: 120 IG 121
           IG
Sbjct: 895 IG 896



 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            ++++VEDN +N K+   L+  +GY      NG  A+E+ ++  K DVI+MD  +  + G 
Sbjct: 938  RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMFQKDGKFDVILMDCMMPIMDGF 997

Query: 63   EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E ++QI+       L + P+IA+TA  +  D +R    G +AY+ KP+     +  I++ 
Sbjct: 998  EASRQIRAYEASKGLAKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLYQIEQA 1057

Query: 120  I 120
            +
Sbjct: 1058 M 1058


>gi|78355417|ref|YP_386866.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217822|gb|ABB37171.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 1070

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++ VED+  N  LFR  ++ +G+   +  NG E L L   +  D+I MD+++  + G  
Sbjct: 784 RILCVEDSANNRLLFRMYLKNTGHEVDEAENGEEGLRLFMLNSYDIIFMDLEMPVMDGYM 843

Query: 64  ITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T  I+   +   +  +PV+A+TA A++  ++R    G   Y++KP      +  +++
Sbjct: 844 ATTAIRDYEQRHRMPAVPVVALTAHALEDFKQRCLAMGFTDYLTKPFRKQQLLAMLER 901


>gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7822]
 gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822]
          Length = 2003

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 76/119 (63%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+IV+D   N  +  +L++  G+   + ++G+EAL+ A + +PD+I+MD+ +  + G 
Sbjct: 1794 QKVLIVDDKGTNRSVLENLLKPLGFNVKEAKDGLEALKCALEFEPDIILMDLVMPNLDGF 1853

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T+Q++   +L+E+ VIA +A     D+++  K GC  +I KPI  S  +E ++K++G
Sbjct: 1854 EATRQLRMLPQLKEVVVIATSASVFNFDQQQSLKVGCNDFIPKPIRESELLEKLRKHLG 1912


>gi|301059404|ref|ZP_07200326.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300446485|gb|EFK10328.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 389

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 3/125 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K K+M+VED+E   ++    I   GY +++  +G++A        PD++++DI L  +
Sbjct: 15  MSKGKIMVVEDDEDLAEILTYNITMRGYRSVKAFDGIDACRAIEAEMPDLVLLDIMLPRL 74

Query: 60  SGLEITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G +I K I+  +E  + E P+I +TA   + ++ +  + G + YI KP S+   M  + 
Sbjct: 75  DGWQICKFIRNHNEGIIAETPIIMLTALGSQEEKLKGIEMGADDYIPKPFSVKEVMFKVD 134

Query: 118 KYIGE 122
           + +G 
Sbjct: 135 RLLGR 139


>gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1287

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 27/147 (18%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++V++VEDN  N +L  +L+   G       +G+E  + A Q   D+I+MDIQ+  + G 
Sbjct: 900  RRVLVVEDNRSNRELAYELMTDLGINVEVACDGLEGFKRAVQEPFDLILMDIQMPGMDGY 959

Query: 63   EITKQIKE---------------------------DSELQEIPVIAVTAFAMKGDEERIR 95
            E T++I+                            +     IP+IA+TA AM GD ++  
Sbjct: 960  EATRRIRSMDHRTEKMGQTSEVAEGIHESFSSLVPEPLNPGIPIIAMTAHAMAGDRDKSL 1019

Query: 96   KGGCEAYISKPISLSIFMETIKKYIGE 122
              G + +++KPI   +    + +++ E
Sbjct: 1020 NAGMDDHLTKPIEPEVLKNMLLRWMPE 1046


>gi|294650744|ref|ZP_06728095.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823390|gb|EFF82242.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 243

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED      +    ++  G   ++  NG +A+E+      D+I++DI+L E++G E+
Sbjct: 15  ILVVEDEYDIGDIIEHYLKREGMRVIRAMNGKQAIEMHASQPIDLILLDIKLPELNGWEV 74

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I++     + PVI +TA     D+    + G + ++ KP + +  +  ++  +  
Sbjct: 75  LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129


>gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++ ED+    +     +   GY    + +G +ALE A     D+I++D+ L E+ GLE+
Sbjct: 4   VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+ +      PV+ +TA   + D       G + Y++KP  L+  +  ++  +  
Sbjct: 64  ARRIRAEGHG--TPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D          L+   GY      +G    ++A   + D++I+D  L ++SGLE
Sbjct: 2   RILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRMLSKMSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +     PV+ +TA     D       G + Y+ KP  L   +  ++  +  
Sbjct: 62  ICQKVRSQAL--STPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|218529950|ref|YP_002420766.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum
            CM4]
 gi|218522253|gb|ACK82838.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum
            CM4]
          Length = 1937

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            +V++V+D+  N+      +E  G   L   NG +++ L + +   D +++DI +  + G 
Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDSIALLKSNPNIDAMLVDIMMPGMDGY 1854

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E  + I+ ++  + +P+IAVTA AMKGD E+  + G   Y+SKPI +   +  ++  +  
Sbjct: 1855 ETMRAIRAEASFRSLPLIAVTAKAMKGDREKCLEAGASDYVSKPIDMDQLLAVLRVQLAR 1914



 Score =  110 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVED+ +   +  +L    G+  L  ++G  AL LA + KP  I +DI L ++ G  +
Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHRFKPHAITLDIGLPDMDGWAL 1589

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
               +K D   + IP+  ++       ++R  + G   ++ KP+     M  +++
Sbjct: 1590 LDLLKNDPRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640



 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            + +++VED+E        L+               ALE     + D  I+D+ L +I G 
Sbjct: 1650 RNLLLVEDDENQRASITALLSEEDVKIFGVGTASAALEALTGGRFDCAIIDLGLPDIGGS 1709

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            E+ +QI+   + +E+P+I  T   +   EE+  +      I K
Sbjct: 1710 ELIEQIRASQDGEELPIIVYTGRELTAAEEQQLRHTASTIILK 1752


>gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 234

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQE 58
           M ++++I+ED E    L    +   GY      +GM  L++  + +   DV+++D  + +
Sbjct: 13  MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+ +++K+     ++PVI VTA    GD+      G + Y++KP ++   M  ++ 
Sbjct: 73  LDGLEVLRRMKKM--TNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRV 130

Query: 119 YIGE 122
              +
Sbjct: 131 IFRK 134


>gi|78356567|ref|YP_388016.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218972|gb|ABB38321.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 544

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED+ +N KL     E  G+       G+E L+   Q   D+I+MDIQ+ ++ G+E
Sbjct: 419 RILLAEDDIINRKLAVFFFEKMGHAVRAVGTGIEVLQALAQEPFDLILMDIQMPDMDGVE 478

Query: 64  ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I+     +   +IP+IA+TA AMKGD+ER    G + Y+SKP+     M+ I+  
Sbjct: 479 ATRAIRSAQGGRIRSDIPIIAMTAHAMKGDKERFLTAGMDGYVSKPVDFPALMQRIEAL 537



 Score =  115 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+ ++D     +      E  GY  L+  +G E +E A + +PDVI++D+++  I G+E
Sbjct: 12  RVLAIDDESSVRQSLAIFFEDCGYEVLEASDGYEGIETALRERPDVILVDLRMPGIDGIE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIGE 122
           + +++   SEL + P IAV+   +        + G   +ISKP+    +  + ++     
Sbjct: 72  VLRRL--SSELPDTPAIAVSGVGVLEQALEAMRSGAWDFISKPVEDFEVLRKAVESARER 129

Query: 123 A 123
           A
Sbjct: 130 A 130


>gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 956

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 7/119 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60
           +K++IVEDN++N  + +  +    +  L  ++G+EALE  ++ K   D+I+MD Q+ ++ 
Sbjct: 825 RKILIVEDNDINQVIVKQHLSA--HKTLSAKSGIEALEALKKMKVTFDLILMDCQMPDMD 882

Query: 61  GLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           G E T++I+           P+IA+TA AMKGD+E     G   Y+SKP  +   +E +
Sbjct: 883 GFEATRRIRRGEAGERYVNAPIIALTANAMKGDKEDCFNAGMNDYLSKPFDVQDLLEKV 941


>gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
 gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
          Length = 260

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|238026819|ref|YP_002911050.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
 gi|237876013|gb|ACR28346.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
          Length = 1182

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLE 63
            +++ ED+  N+     +IE  G   L  RNG EAL++  +    D+++MD+ + E+ GL 
Sbjct: 1063 ILLAEDDARNIFALSHVIEPLGAKLLIARNGREALDVLERGEAVDLVLMDVMMPEMDGLT 1122

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             T +I+ D     +P+IA+TA AM  D  R  + G + YISKPI +   +   + +  +
Sbjct: 1123 ATAEIRRDPRFAHLPIIALTAKAMAHDRVRCLQAGADDYISKPIDVDRLLSLCRVWFRQ 1181



 Score = 96.7 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++ +ED+ +   + RDL+    +  +   +G   + L R  +P  +++DI L + SGL +
Sbjct: 795 ILAIEDDPVFAAILRDLVHELDFDFVHASDGSSGIALVRDMQPTAVLLDIDLPDRSGLTV 854

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + +K D+  + IP+  V   A     E+    G   Y  KP + S     I++  G 
Sbjct: 855 LEWLKNDTLTRHIPIHIV---AATDHTEKALHLGAVGYTLKPTARSTLEAAIRRLEGR 909



 Score = 78.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 45/94 (47%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V+++ED+    +  R L+E      +       AL+   Q   D ++ D+ L + +G 
Sbjct: 915  KRVLVIEDDSAMRESIRVLLEGETTEIVAVATLASALDALAQGGFDCVVTDLALPDGTGY 974

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            ++ +++  D+    +PVI  T   +  DEE   +
Sbjct: 975  DLLERLAADTARARLPVIVYTGRVLSADEEHRLR 1008


>gi|229829584|ref|ZP_04455653.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
           14600]
 gi|229791573|gb|EEP27687.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
           14600]
          Length = 237

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   +++ +D     +L R  ++   Y  L+  +G+EAL+L ++   D+ ++D+ + ++ 
Sbjct: 1   MEYTILLADDEAEIRELLRLYLDHESYRVLEANDGLEALDLLKKEHVDLCVLDVMMPKMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+I++ S    +PV+ ++A     D+      G + Y+SKP +    +  I   I
Sbjct: 61  GFCLLKEIRKKS---NMPVLMLSAKDGDSDKILGLNLGADDYLSKPFNPLEAVARINASI 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|229591084|ref|YP_002873203.1| oxidative stress related two component system, transcriptional
           regulator [Pseudomonas fluorescens SBW25]
 gi|229362950|emb|CAY49878.1| oxidative stress related two component system, transcriptional
           regulator [Pseudomonas fluorescens SBW25]
          Length = 247

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+    +     +    +      +     +L +    DV+++D+ L +  G E
Sbjct: 11  RVLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQAFDVVVLDVLLPDGDGFE 70

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  Q+   S     PVI +TA     D  R    G + Y++KP      +  I   +  
Sbjct: 71  LCNQLHRRS---NTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRR 126


>gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 232

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 1   MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +   +++++D     K  R  + + GY  ++   G E L  A   KPD++++D+ L +
Sbjct: 4   MSQTATILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALSKPDLLVLDLGLPD 63

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + G ++ ++ +E      +PV+ ++  A +G +      G   Y++KP  +  F+  ++ 
Sbjct: 64  MDGQQVLREFRE---WSTVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRA 120

Query: 119 YIGEA 123
            + +A
Sbjct: 121 LLRQA 125


>gi|229195307|ref|ZP_04322079.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
 gi|228588162|gb|EEK46208.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|225375673|ref|ZP_03752894.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM
           16841]
 gi|257437566|ref|ZP_05613321.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii
           A2-165]
 gi|225212443|gb|EEG94797.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM
           16841]
 gi|257199873|gb|EEU98157.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii
           A2-165]
 gi|295109640|emb|CBL23593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 221

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I+ED++    + +D +E   Y    T  G  ALE  ++  PD+II+D+ L  ISG
Sbjct: 1   MNKVLIIEDDKEICFMIKDHLEKYNYQVFFTFTGANALERVKELTPDLIILDLMLPFISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I++      +PVI V+A ++  ++  + + G + Y++KP  L   +  I++ + 
Sbjct: 61  DELIRTIRK---FSNVPVIVVSAKSLTFNKVELFRLGADDYLTKPFDLDELLARIERNLL 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
 gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
          Length = 233

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED++    L    +E  GY      NG +A+  A   +PD++++D+ L ++ G+++
Sbjct: 6   ILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQQPDIMLLDLGLPDMDGVQV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++      ++P+I ++A +   D+      G + Y++KP S+      ++  +  
Sbjct: 66  IAKVR---TWSQMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATLRR 120


>gi|114328635|ref|YP_745792.1| two-component response regulator chvI [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316809|gb|ABI62869.1| two-component response regulator chvI [Granulibacter bethesdensis
           CGDNIH1]
          Length = 260

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + + +V+D+   +      +E  G+      +G  AL+       D+ ++DI++  + 
Sbjct: 28  MTQTIALVDDDRNILTSVSMTLEAEGFQVRTYTDGESALQGLTTRPVDLAVLDIKMPRMD 87

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++++  + L   PVI +T+   + D+    + G + YI+KP S  + +E I+  +
Sbjct: 88  GMELLQRLRARTAL---PVIFLTSKDEEVDQLMGLRLGADDYITKPFSQRLLIERIRALL 144

Query: 121 GE 122
             
Sbjct: 145 RR 146


>gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 220

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +   D +   GY     R+G+  L   +    D++I+D+ L  + GLE
Sbjct: 2   RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++   +   +PV+ +TA     D       G + Y+ KP  L+     ++  +  +
Sbjct: 62  LLRRLRAGGD--SLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRS 119


>gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536]
 gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str.
           8401]
 gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972]
 gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605]
 gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli
           CFT073]
 gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli
           536]
 gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972]
 gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator,
           winged helix family precursor [Shigella flexneri
           2002017]
 gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972]
 gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
 gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263]
 gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
 gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605]
          Length = 260

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|328885015|emb|CCA58254.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 245

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   ++     +   G++     +G  A++ A   +PD++++D+ L    GL
Sbjct: 19  RRVLVVEDDATIVEAISARLRAEGFLVQTATDGPAAVDAAEAWQPDLMVLDVMLPGFDGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 79  EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135


>gi|328861215|gb|EGG10319.1| hypothetical protein MELLADRAFT_115560 [Melampsora larici-populina
            98AG31]
          Length = 1004

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 72/124 (58%), Gaps = 5/124 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            KK+++V+DN +N++L R ++E  GY      NG+EA++ A     D+++MD Q+  + G 
Sbjct: 881  KKILLVDDNGMNVELGRRVLEKIGYEVQVAYNGLEAVQKACHSDCDLVLMDCQMPGVDGP 940

Query: 63   EITKQIK-----EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            E T+ I+         +  +P+IA+TA   + D+    + G + ++ KP+ +++   T+ 
Sbjct: 941  EATRMIRDYETKAKEGVNRLPIIALTANVSESDQTTCMESGMDGFLPKPLQVTVLKATLH 1000

Query: 118  KYIG 121
            +++G
Sbjct: 1001 RFLG 1004


>gi|327404314|ref|YP_004345152.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319822|gb|AEA44314.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 230

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 2   LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           +K   K+++VED+     +  D +++ GY  +   NGME      + +  + I D+ + +
Sbjct: 1   MKSKAKILLVEDDTNLGFVISDQLKSEGYQVVLCSNGMEGHMRFSEDEFHLCIFDVMMPK 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             G  + K+I+  +  QE+P+I +TA AM  D+      G + Y++KP S       +K 
Sbjct: 61  KDGFTLAKEIRTMN--QEVPIIFLTAKAMTEDKVAGFNAGGDDYLTKPFSFDELSVRVKA 118

Query: 119 YIGE 122
            +  
Sbjct: 119 LLKR 122


>gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
 gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
          Length = 228

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++IVED +   +     ++  GY      NG E LE A +   D+I++D+ L E+ 
Sbjct: 1   MTKKILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++ +   +   ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|325927769|ref|ZP_08188997.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
 gi|325541970|gb|EGD13484.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
          Length = 754

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N+ + + L+   G+ A    +G  AL      + D++ MD Q+  + G  
Sbjct: 483 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALASMESTRYDMVFMDCQMPVLDGYA 542

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++ +    +S  + IP++A+TA AM GD ER    G + Y+SKP++       +++++
Sbjct: 543 ATRRWRAMETESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 602

Query: 121 GE 122
             
Sbjct: 603 PR 604


>gi|325268223|ref|ZP_08134856.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
 gi|324989365|gb|EGC21315.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
          Length = 878

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++++DN       R  +    Y   +  +G   LE+AR+  PD+II DI +  + GLE 
Sbjct: 635 VLVIDDNGDIRTYLRSALSPI-YKVSEAVDGKNGLEMARRIVPDLIISDIMMPVMDGLEF 693

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             Q+K+D  +  IPVI +TA ++        + G +AYI+KP SL + +  I   I
Sbjct: 694 CSQLKQDKAISHIPVILLTARSLDDQRVEGYEHGADAYIAKPFSLRLLLSRIDNLI 749


>gi|331213871|ref|XP_003319617.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298607|gb|EFP75198.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1640

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 72/125 (57%), Gaps = 5/125 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++ EDN +N K+   L++  G+      NG  A+E A ++  D+++MD+ +  + GLE
Sbjct: 1476 KILLAEDNHVNQKVATKLLDMGGHKVEVVDNGELAVEAATKNTYDLVLMDVSMPTMGGLE 1535

Query: 64   ITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK-- 118
             T  I+   +D+ L+ +P+IA+TA AM GD ER    G + Y++KP+  +    ++ +  
Sbjct: 1536 ATSLIRKHEQDNHLERVPIIALTAHAMLGDRERCIDAGMDDYVTKPLRKADLDASMSRCV 1595

Query: 119  YIGEA 123
             I  A
Sbjct: 1596 AIARA 1600


>gi|189466516|ref|ZP_03015301.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM
           17393]
 gi|189434780|gb|EDV03765.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM
           17393]
          Length = 229

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL++       ++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTAHSAEEALKM-DIGSYSLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  ++P+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 232

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D++  ++     +   GY  L+  +G EALE+  + +  ++++D+ + ++ G
Sbjct: 1   MYNILVCDDDKEIVEAIEIYLTQEGYRILKAYDGTEALEMLEREEVHLLLLDVMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +  T +I+E +    IP+I ++A +   D+      G + Y++KP S    +  +K  + 
Sbjct: 61  IRATLKIREKN---SIPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|134095909|ref|YP_001100984.1| twitching motility protein. pilH ortholog [Herminiimonas
           arsenicoxydans]
 gi|133739812|emb|CAL62863.1| Twitching motility two-component response regulator transcription
           regulator protein PilH [Herminiimonas arsenicoxydans]
          Length = 121

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 58/117 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K++IV+D+        D++   G+      NG EAL   +  KP +I+MDI +   +G 
Sbjct: 4   QKILIVDDSPTERYFLTDILVKKGFSVSTAENGEEALLKIKADKPQLILMDIVMPGQNGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           +IT+ I  D E Q++P+I  T+   + D     + G   YI KP+  +  +  I   
Sbjct: 64  QITRAITRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKPVDPAELLSKIAAL 120


>gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 847

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED E+N  +   ++E  GY      NG+ AL    + + D ++MD+Q+  + G +
Sbjct: 727 RILVVEDGEINQLVAVGILEHLGYTTDVADNGVTALSAMGRTRYDAVLMDVQMPGMDGYQ 786

Query: 64  ITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I+  + ++   P+IA+TA A   D +R    G + YISKP++       + ++
Sbjct: 787 ATREIRRLEGDVHHTPIIAMTASATNDDRDRCLAAGMDDYISKPVNPHTLETVLSRW 843



 Score = 94.0 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58
           +V++V+DN+ N  +  D +   G       +G  AL          H  D+ ++D+ + +
Sbjct: 587 RVLVVDDNQTNRMILHDQLTAWGLHVDLAEDGPHALAALADAHRTHHPFDLAVLDLCMPD 646

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           + GLE+  +I  D  L  + +  +T+   +  +   R  G  A ++KP+ LS    T++ 
Sbjct: 647 MDGLELAHRISSDPTLTGLAMALLTS-GGEISQTDARAVGITASMTKPVQLSRLRATLQD 705

Query: 119 YIG 121
            IG
Sbjct: 706 IIG 708


>gi|330966402|gb|EGH66662.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 254

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D+          +    +      +     +L RQ   DV+++D+ L +  G E
Sbjct: 12  RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  ++        IPVI +TA     D  R    G + Y++KP      +  I   +  
Sbjct: 72  LCSRLHRRE---NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRR 127


>gi|262273464|ref|ZP_06051278.1| copper-sensing two-component system response regulator CpxR
           [Grimontia hollisae CIP 101886]
 gi|262222442|gb|EEY73753.1| copper-sensing two-component system response regulator CpxR
           [Grimontia hollisae CIP 101886]
          Length = 240

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L  DL+E  GY      NG E L+       D++++D+ +  ++G
Sbjct: 10  MANILLIDDDTELTSLLHDLLELEGYQVEIANNGQEGLDKISDQT-DLVLLDVMMPVLNG 68

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  +++++  E    PV+ +TA   + D     + G + Y+ KP S    +  ++  + 
Sbjct: 69  METLRRLRDSWET---PVLMLTAKGEEIDRVMGLELGADDYLPKPFSDRELLARMRAILR 125

Query: 122 E 122
            
Sbjct: 126 R 126


>gi|228926141|ref|ZP_04089217.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228833506|gb|EEM79067.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|212692483|ref|ZP_03300611.1| hypothetical protein BACDOR_01979 [Bacteroides dorei DSM 17855]
 gi|212664958|gb|EEB25530.1| hypothetical protein BACDOR_01979 [Bacteroides dorei DSM 17855]
          Length = 1306

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++++DN   + + +++     Y      +G +A +    H+ D+II D+ L +I+G E
Sbjct: 1056 TLLLIDDNAELLYIMKEIF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1114

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  +IK D     IPV+ +TA     D       G + YI+KP  + +    +   I 
Sbjct: 1115 LCTRIKSDLRFNHIPVVILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1172


>gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1]
          Length = 1522

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61
            +++IVEDN  N ++ R+L+E  G +     +G EA+E+   H    D+++MD+Q+  + G
Sbjct: 1173 RLLIVEDNLNNQQIARELLEDEGAVVSIANHGKEAIEILEHHPSSFDLVLMDLQMPVMDG 1232

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
               TK I++   L+ +P+IA+TA AM  D +     G   +I KP  L+  +  + KY G
Sbjct: 1233 FNATKYIRKSIGLKNLPIIAMTANAMVSDRDACLAAGMNEHIGKPFDLNNLIHIVLKYSG 1292

Query: 122  EA 123
            +A
Sbjct: 1293 QA 1294



 Score = 99.0 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 8/127 (6%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58
            +V++V+DN     L + + E+  +      +G +AL+L RQ          + +D Q+  
Sbjct: 1025 RVLVVDDNPTACNLIKQMGESLKWSVDVATSGSDALQLMRQQHERGMTYGALFIDWQMPG 1084

Query: 59   ISGLEITKQIKEDSELQEIPVI-AVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115
            + G + +K ++E   +   P+I  +TA   +   +R  +     + Y+ KPI+ S+ +++
Sbjct: 1085 LDGWQTSKCVREMMPVDNGPIIVMITAHDREMLLQRSEEDQALLDGYLVKPITASMLLDS 1144

Query: 116  IKKYIGE 122
            +   + E
Sbjct: 1145 VNDALSE 1151


>gi|152982489|ref|YP_001354645.1| twitching motility two-component response regulator transcription
           regulator protein [Janthinobacterium sp. Marseille]
 gi|151282566|gb|ABR90976.1| twitching motility two-component response regulator transcription
           regulator protein [Janthinobacterium sp. Marseille]
          Length = 121

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 58/117 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           +K+++V+D+        D++   G+      NG EAL   +  KP +I+MDI +   +G 
Sbjct: 4   QKILVVDDSPTERYFLTDILIKRGFSVSTAENGEEALLKIKADKPQLILMDIVMPGQNGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           ++T+ I  D E Q++P+I  T+   + D     + G   YI KP+  +  +  I   
Sbjct: 64  QVTRSITRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKPVDPAELLSKIAAL 120


>gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1051

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+DN +N K+    +  +G+      NG EA++L R  +  +I+MD  +  + G E
Sbjct: 769 KVLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDLFRTSQYCLILMDCMMPVMDGFE 828

Query: 64  ITKQIKE----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            TKQI++    ++    IP+IA+TA  +  D ++    G + Y+ KP    +  E + K 
Sbjct: 829 ATKQIRQIEQKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKADLLKEKLDKA 888

Query: 120 IG 121
           +G
Sbjct: 889 VG 890



 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N K+   L+  +GY      NG  A+E+  R    D+I+MD  +  + G 
Sbjct: 931  RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMFQRDGGFDIILMDCMMPVMDGF 990

Query: 63   EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E TKQI+       L++ P+IA+TA  +  D +R    G +AY+ KP+     +  I+  
Sbjct: 991  EATKQIRAYEASLGLEKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLHQIENV 1050

Query: 120  I 120
            +
Sbjct: 1051 M 1051


>gi|87311452|ref|ZP_01093572.1| sensor histidine kinase/response regulator [Blastopirellula marina
            DSM 3645]
 gi|87285864|gb|EAQ77778.1| sensor histidine kinase/response regulator [Blastopirellula marina
            DSM 3645]
          Length = 1006

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 71/126 (56%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56
            + ++IVED+  N+     ++E  G +    RNG+EA+    +      ++ D+++MD+ +
Sbjct: 876  RHILIVEDDVRNVFALTSILEPCGVVLQVARNGLEAVAAIDKSIAEPNNRVDLVLMDVMM 935

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ G+  T++I++  + Q +P+I +TA AMK D++     G   Y++KP+ +   +  I
Sbjct: 936  PEMDGISATQEIRKRPQCQRLPIIMLTAKAMKDDQQSCLAAGANDYLAKPLDVEKLLSLI 995

Query: 117  KKYIGE 122
            + ++  
Sbjct: 996  RVWMPR 1001



 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+    ++  +L   + +  +      EA   A +++P  +I+D+ L + SGL +
Sbjct: 610 ILVVEDDPNFAQILYNLAHDTRFQCVVANTAEEAYAAALEYQPSAVILDVGLPDHSGLSV 669

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             ++K D+ ++ IPV  ++              G   ++ KP+     +E ++
Sbjct: 670 LDRLKNDARVRHIPVHVISGNDYNDS---ALSLGAIGFMLKPVKREEIIEVLQ 719



 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 47/95 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++V++VED+ + +     L+ +     +  ++  E LE  R    D +++D+ L + SG
Sbjct: 729 MRRVLVVEDDPVQLDSMHALLRSRDVETIGVQSAAECLEKLRSETFDCMVLDLTLPDASG 788

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
             + + + ++      PVI  T   +  ++E+  +
Sbjct: 789 YSLLETLSQEESYSFPPVIVYTGRDLSIEQEQRLR 823


>gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     +    L++   Y      NG EAL+     + DVII+D+ + ++ G  
Sbjct: 2   KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K ++  ++  ++ ++ +TA     D       G + Y+ KP      M  I+  +  
Sbjct: 62  FLKLLR--NKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRR 118


>gi|94985622|ref|YP_604986.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94555903|gb|ABF45817.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 227

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++IVED     ++        GY   +  +G+ AL   R  +PD+I++D+ L   S
Sbjct: 1   MSALILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVMLPGRS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ K ++ D      PVI VTA A + D+    + G + Y+ KP      M  +K  +
Sbjct: 61  GLDVLKTVRADGPT---PVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVL 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|298376717|ref|ZP_06986672.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|301310020|ref|ZP_07215959.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|298266595|gb|EFI08253.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|300831594|gb|EFK62225.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 374

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 64/114 (56%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IV+D   N+ L + +++  GY  L   +G +AL +A +  P++I++DI + E+ G E
Sbjct: 9   KVLIVDDVPTNVMLVQAILKKEGYTLLTCDSGTKALRIANEKHPNLILLDIMMPEMDGYE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           + + +K + E  +IPVI ++A +      +  + G   Y++KP      ++ + 
Sbjct: 69  VLQHLKSNPETTDIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122


>gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED+       +  +E   Y+     +G +AL  A     D++I+D+ L  + G E
Sbjct: 2   RILVAEDHPSLGPDIQRGLERFHYVTDLATDGEDALASALATPYDLLILDVMLPSLDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++  S  + +P++ +TA     D  R    G + Y+ KP         ++  +  
Sbjct: 62  VCRRLR--SAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLRR 118


>gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 224

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +     +  +GY+  +  +G E   L      D +++DI L ++ G+ 
Sbjct: 2   RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +  + +S  + +PV+ +TA     D+ +    G + Y++KP  L   +  I+  +  +
Sbjct: 62  VLEAWRRNS--RAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRS 119


>gi|262382721|ref|ZP_06075858.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
 gi|262295599|gb|EEY83530.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
          Length = 1314

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++++D++  + L  + + +  Y   +  N  EALE  +Q+ P +II DI +  I GLE+
Sbjct: 1065 ILVIDDHKDIVWLITETLSSE-YQVQEAYNAEEALEFLKQYTPSLIITDIMMPNIDGLEL 1123

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               IKE+   + IP+I ++A     ++      G +AY++KP S ++ +  + + +
Sbjct: 1124 ISLIKENKYTRHIPLIIISAKISDQEQAAGLNIGADAYLTKPFSPTVLLSVVNRLM 1179


>gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 247

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED      L    +  +GY    T  G  AL    + +P ++++D+ L ++ G E
Sbjct: 13  RLLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVMLPDLDGFE 72

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +T++++   +  E P++ +TA     D  +    G + Y+SKP S+   +  I+  +  
Sbjct: 73  VTRRLRAAGD--ECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRR 129


>gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
 gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
          Length = 238

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++I++D E   KL    +E  GYI  +  NG + LE  +      +++D+QL  ++
Sbjct: 1   MSERILIIDDEERIRKLLIMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I  ++++    +  PVI ++A A +       + G + Y+ KP S    M  I   +
Sbjct: 61  GKSILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAIL 117

Query: 121 GE 122
             
Sbjct: 118 QR 119


>gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
 gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
          Length = 224

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I+ED E         ++  GYI     +G + LE A ++  D+I++D+ L  ++G
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++     +  P+I +TA     D       G + Y+ KP ++   +  ++    
Sbjct: 61  LEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|254524029|ref|ZP_05136084.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
           SKA14]
 gi|219721620|gb|EED40145.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
           SKA14]
          Length = 237

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++++D     +     +   GY   Q   G E L+LA     D++I+DI L ++ G 
Sbjct: 13  ARVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGH 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+ +Q+++     ++PVI +T  A + ++ R    G   Y++KP      M  ++  + 
Sbjct: 73  EVLEQLRQ---WSQVPVIMLTVRAGEAEKVRALDTGANDYVTKPFGTQELMARVRALLR 128


>gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1104

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N K+   +++  G+      NG+EA+        D+++MD Q+ E+ G E
Sbjct: 850 RLLLVEDNLVNRKVALSILDNLGFRTDAVSNGLEAISALENLPYDLVLMDCQMPELDGYE 909

Query: 64  ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK+I+        + IP+IA+TA AM GD E+    G + YISKP+  +   + ++K++
Sbjct: 910 ATKRIRSAESRVLNRGIPIIAMTAHAMAGDREKCIACGMDDYISKPVEPAALNQLVEKWL 969



 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 6/125 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56
           +K++IV+DN  N +L   L+ET G    +  +   AL   ++          +II D+Q+
Sbjct: 698 RKILIVDDNATNRRLLSVLLETWGCRHEEAPDAQNALLKIKKAALEEKEPYSLIITDMQM 757

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             + G E+ + IK D +L    ++ +T+ A +GD  R+ + G  AY++KPI  S+  + +
Sbjct: 758 PLMDGEELGRLIKNDPDLAGSSLLMMTSIANRGDAARLSEIGFSAYLTKPIKQSVLFDCL 817

Query: 117 KKYIG 121
           +  +G
Sbjct: 818 QTVLG 822


>gi|78484350|ref|YP_390275.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78362636|gb|ABB40601.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 223

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED  L ++  +  +    YI     +G EAL L  + + D+II+D+ L + SG
Sbjct: 1   MSKILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLIILDLGLPKKSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ +QI+ D      PV+ +TA     +     K G + Y+ KP      +  I+  + 
Sbjct: 61  LQVLEQIRADQNT--TPVLILTARNTWQERVEGLKKGADDYLGKPFHFEELLARIEVLLK 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|84503161|ref|ZP_01001246.1| DNA-binding response regulator [Oceanicola batsensis HTCC2597]
 gi|84686727|ref|ZP_01014614.1| DNA-binding response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|114762576|ref|ZP_01442020.1| DNA-binding response regulator [Pelagibaca bermudensis HTCC2601]
 gi|159046311|ref|YP_001541983.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|159046586|ref|YP_001542256.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|84388402|gb|EAQ01351.1| DNA-binding response regulator [Oceanicola batsensis HTCC2597]
 gi|84665158|gb|EAQ11637.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2654]
 gi|114544831|gb|EAU47836.1| DNA-binding response regulator [Roseovarius sp. HTCC2601]
 gi|157914070|gb|ABV95502.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157914345|gb|ABV95775.1| two component transcriptional regulator, winged helix family
           [Dinoroseobacter shibae DFL 12]
          Length = 240

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +     +E +G      R+ +E          D++++D+ +    GL 
Sbjct: 6   HILIVDDHAQIRESVARFLEKNGMRTTVARDAVEMDAKLATGHFDLLVLDVMMPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++   +   ++P+I +TA   + D     + G + Y++KP +    +  IK  +  +
Sbjct: 66  VCRRL---APEGDLPIIMLTALGEETDRIVGLEIGADDYLAKPFNPRELLARIKSVLRRS 122


>gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 223

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED     +    L++   Y      NG EAL+     + DVII+D+ + ++ G  
Sbjct: 2   KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K ++  ++  ++ ++ +TA     D       G + Y+ KP      M  I+  +  
Sbjct: 62  FLKLLR--NKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRR 118


>gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I GL 
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLH 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQRLRADNHT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|26991668|ref|NP_747093.1| response regulator receiver protein [Pseudomonas putida KT2440]
 gi|148550067|ref|YP_001270169.1| response regulator receiver protein [Pseudomonas putida F1]
 gi|24986766|gb|AAN70557.1|AE016698_5 type IV pili response regulator PilH [Pseudomonas putida KT2440]
 gi|148514125|gb|ABQ80985.1| response regulator receiver protein [Pseudomonas putida F1]
          Length = 121

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 67/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V+IV+D+   M    + +E  GY  L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARVLIVDDSPTEMYRLTEWLEKHGYQVLKASNGADGVALARQDKPDAVLMDIVMPGMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + T+Q+ +D +   IPVI VT    + D     + G   +++KP+     +  +K+ +G
Sbjct: 61  FQATRQLSKDPDTSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVEEEALIAKLKEVLG 120


>gi|325293769|ref|YP_004279633.1| two-component response regulator protein [Agrobacterium sp. H13-3]
 gi|325061622|gb|ADY65313.1| putative two-component response regulator protein [Agrobacterium
           sp. H13-3]
          Length = 309

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +    D +E SG+ AL   +G  AL +A +  PD+I++D  +  + G E 
Sbjct: 13  VLLVDDSPEALGFLTDALEQSGFSALIATSGQAALNIAERITPDIILLDAVMPAMDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K ++ + ++PVI +T         R  + G   Y++KPI++      I+ ++  A
Sbjct: 73  CRRLKANAAVAQVPVIFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLSNA 131


>gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 254

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQL 56
           M  +++ VEDN    ++  + +   G+   +  +G  AL            D++++D+ L
Sbjct: 12  MTYRILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLML 71

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             + GLE+ ++++        PV+ VTA A   D     + G + Y++KP  +SI +  +
Sbjct: 72  PGLDGLEVCRRLRRQD--SRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARV 129

Query: 117 KKYIGE 122
           +  +  
Sbjct: 130 QALLRR 135


>gi|302340322|ref|YP_003805528.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301637507|gb|ADK82934.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 374

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 59/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N+ +   ++   GY      +G+EA+EL +  + D+I++DI++  I+G+E 
Sbjct: 9   ILIVDDTRNNLFILSSILRKKGYRIAAALSGLEAIELLQHKQFDLILLDIRMPGINGIET 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K+IK   E  EIPV+ ++A             G   YI KP      +  I+  +
Sbjct: 69  CKRIKATPETAEIPVLFISAIDDHDLIAEAFAAGGRDYILKPFEPVELIARIETQL 124


>gi|297243684|ref|ZP_06927615.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888435|gb|EFH27176.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 250

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++VED           I   G+ A    +G  A+  A Q KPD+IIMD+ L  + G+
Sbjct: 12  RTILVVEDEPDLATAIAQRITAQGWRARVAADGASAVRAAEQLKPDLIIMDVMLPIMDGI 71

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E T++I        +P++ +TA   + D+      G + Y++KP S    +      +  
Sbjct: 72  EATRRI---ISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRR 128


>gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D+    ++  +     GY   Q  NG E L++ +     +I++D+ + ++ G  +
Sbjct: 8   ILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMDGYTM 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++E S    IPVI +TA   + D+ +    GC+ YI KP   +     +   +  
Sbjct: 68  LCKLRESS---NIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKR 122


>gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 234

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++V+D    ++L   ++E  G+       +   AL L  QH  D+I++D+ L   SG +
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVMLPGQSGFD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I   I++ +   + P+  ++A A   D+      G + YI+KP +    +  IK  +  
Sbjct: 66  ICPIIRQQT---DCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRR 121


>gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08]
 gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07]
 gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08]
 gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D++  +      +++ G+   +  +GM+ALE+  ++   +I+MDI + ++ G
Sbjct: 1   MYNILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIMMPKLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++ T +I+E+   + IP+I ++A +   D+      G + YI+KP +L   +  +K  + 
Sbjct: 61  IKATVKIREE---RNIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|210609626|ref|ZP_03288077.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787]
 gi|210152816|gb|EEA83822.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     L    +ET  Y      NG++AL  +   KPD++++D+ L ++ G+EI
Sbjct: 6   ILVVEDDTAIRNLITTTLETQDYRFHTAPNGVQALLESVSQKPDIMLLDLGLPDMDGIEI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+++       +P+I ++A +   D+      G + Y++KP S+   +  ++  +  
Sbjct: 66  IKKVRS---WSNLPIIVISARSEDRDKIDALDAGADDYLTKPFSVDELLARLRVTLRR 120


>gi|67925033|ref|ZP_00518415.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
 gi|67853127|gb|EAM48504.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
          Length = 204

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D   N++L   ++   GY   +  +G +AL + +   PD+I++DI++ E+ G E+
Sbjct: 11  ILIVDDIPENLQLLFTMLTKQGYEVRRVLSGKQALNVVKVEPPDLILLDIRMPELDGYEV 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D   Q IPVI ++A     D+    + G   YISKP  L   +  ++  +
Sbjct: 71  CQRLKADETTQNIPVIFLSALNETFDKVTAFQVGGVDYISKPFQLQEVIIRVENQL 126


>gi|310821132|ref|YP_003953490.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394204|gb|ADO71663.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 972

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +DN       R L++ +  +    ++G  A +      PD+++ D+ +  + G  
Sbjct: 616 RVLVADDNSDMRGYIRSLLDPT-CVVETVQDGEAAYQAILDSPPDLVLSDVMMPRLDGFG 674

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E+ + Q +P+I ++A A +       + G   Y+ KP S    +  I+  +  A
Sbjct: 675 LLQKVRENPKTQGVPLILLSARAGEEARIEGLQAGANDYLVKPFSARELLARIENAVRLA 734


>gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 232

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISG 61
           +V++VED     K  +  +    YI    +NG EA E       +  + I D  L  +SG
Sbjct: 2   RVLLVEDEPDLGKAIKRTLNQEKYIVDWAQNGNEAWEYLESQWTQYTLAIFDWLLPGLSG 61

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++  +    +PV+ +TA     D+      G + Y+ KP  ++  +  ++    
Sbjct: 62  LELCQRLRAKNN--HLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRALQR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|298387534|ref|ZP_06997086.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298259741|gb|EFI02613.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 1346

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y      NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIPEYKPELVISDIMMPEMRGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK + E   IPVI +TA   + D     + G + YI KP ++ I   T+   +  
Sbjct: 1128 ELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLLIN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|270296880|ref|ZP_06203079.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479144|ref|ZP_07938284.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|270272867|gb|EFA18730.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904716|gb|EFV26530.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 239

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED +    + +D +E   +I     +G E L      +PDV++ D+ +  + G E
Sbjct: 5   TVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRKFFDLRPDVLVADVMMPRMDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++    ++ PV+ +TA +   D     + G   Y+ KP  +   +  IK  +G+A
Sbjct: 65  MVRRIRQTD--KQTPVLFLTARSTINDVVEGFELGANDYLKKPFGMQELIIRIKALVGKA 122


>gi|253571881|ref|ZP_04849286.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251838478|gb|EES66564.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1346

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y      NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIPEYKPELVISDIMMPEMRGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK + E   IPVI +TA   + D     + G + YI KP ++ I   T+   +  
Sbjct: 1128 ELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLLIN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|229177538|ref|ZP_04304916.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
 gi|228605900|gb|EEK63343.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQNANIITAQNGLECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMENIRMNLGLSEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|114778037|ref|ZP_01452937.1| type IV pilus biogenesis protein PilB [Mariprofundus ferrooxydans
           PV-1]
 gi|114551643|gb|EAU54196.1| type IV pilus biogenesis protein PilB [Mariprofundus ferrooxydans
           PV-1]
          Length = 732

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 66/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + V++V+D+     L   +++  GY  LQ  +G +A ++ ++ KP +++ D ++  ++G+
Sbjct: 602 QTVLVVDDSSSVRNLVEFVLDADGYKVLQAEDGQQAWDMLQRMKPSLVLTDCEMPNMTGM 661

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ KQ++E     ++PVI +TA   + DE +  K G   YI KP+        ++K +
Sbjct: 662 ELLKQMREQDRFDDVPVILLTARRSEEDEVQGLKAGAADYIGKPVEPLKLQARVRKTL 719


>gi|70733111|ref|YP_262884.1| type IV pilus response regulator Pilh [Pseudomonas fluorescens
           Pf-5]
 gi|68347410|gb|AAY95016.1| type IV pilus response regulator Pilh [Pseudomonas fluorescens
           Pf-5]
          Length = 121

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 69/119 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+   M     ++E  G+  L+  NG + + LAR+ KPD ++MDI +  ++G
Sbjct: 1   MARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALAREEKPDAVLMDIVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+Q+ +D+E   IPVI +T    + D+    + G + Y++KP+     ++T+   +
Sbjct: 61  FQATRQLTKDAETSHIPVIIITTKDQETDKVWGTRQGAKDYLTKPVDEETLIKTLNNVL 119


>gi|30019942|ref|NP_831573.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|29895487|gb|AAP08774.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
          Length = 247

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IV+D++  ++  +  +   G+      NG E+LE+   +   + I+DI + ++ G+E+
Sbjct: 25  ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 84

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+E      +P++ ++A +   D+      G + YI KP S   F+  +K  +  
Sbjct: 85  CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 139


>gi|29347144|ref|NP_810647.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339043|gb|AAO76841.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1346

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y      NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIPEYKPELVISDIMMPEMRGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK + E   IPVI +TA   + D     + G + YI KP ++ I   T+   +  
Sbjct: 1128 ELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLLIN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|17229771|ref|NP_486319.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131370|dbj|BAB73978.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1299

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K+++VED  +N K+  +++   GY      NG+EALE  ++   DV+ MDIQ+ E+ G E
Sbjct: 1033 KILLVEDVLVNQKIAMNMLHLLGYRTDVANNGLEALEALQRQLYDVVFMDIQMPEMDGWE 1092

Query: 64   ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             T +I+++ S   +  +IA+TA A   D ++    G + YISKPISL      +KK+
Sbjct: 1093 TTHKIRQEFSPTLQPWIIAMTAHARPEDRQQCLAAGMDDYISKPISLEDITTALKKF 1149



 Score = 67.8 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
            K++++   N    K     +++ G       +   AL    QH    + ++D+   +I+G
Sbjct: 876  KRLLLAVGNANLRKCLTRQLQSLGLDVQAVDSNATALHCLWQHTSLALAVLDVDSPQING 935

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS----LSIFMETIK 117
            L ++ +I+   + Q +P++ ++A   +  E +       A++ KP+      +  ++ ++
Sbjct: 936  LHLSTKIRAIPQHQNLPLVMLSAKGKQTLEVKQVASEFTAFLHKPLRHYQLHNTLLQIVR 995

Query: 118  -KYIGEA 123
             K++ ++
Sbjct: 996  GKWLSKS 1002


>gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED+    +L ++ ++ +GY     ++G++ L+ A     D+II+D+ L    G
Sbjct: 1   MKQILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTYDLIIVDLMLPGKDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            EI ++++E  E   IP+I V+A +   D+ +    G + Y++KP S +  +  IK ++
Sbjct: 61  YEIVREVREKYE---IPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHM 116


>gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 229

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED    ++   + +   GY      NG EALE+A+    D+I++D+ L  I GLE
Sbjct: 2   KILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNLPGIDGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   +  E  V+ ++A +   D       G + Y+ KP +       ++  +  
Sbjct: 62  LLRTLRA--QHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRR 118


>gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 241

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M +K++IVED     K+ +  +E   Y      +G   LE A   + D+I++D+ L  +S
Sbjct: 1   MKEKILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVMLPSLS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++++       PVI +TA     D+      G   Y++KP  +   +  ++  I
Sbjct: 61  GIEVLRRLRKAEVF--TPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCI 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|225567891|ref|ZP_03776916.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM
           15053]
 gi|225163292|gb|EEG75911.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM
           15053]
          Length = 236

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+     L    +E+  Y  + + NG +A+  A    PD+I+MD+ L ++ G+++
Sbjct: 9   VLVVEDDAPVRNLITTTLESQNYKYMTSANGSQAVMSAASGNPDIILMDLGLPDMDGVDV 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+I+  S     P+I ++A +   D+      G + Y++KP S+   +  ++  +  
Sbjct: 69  IKKIRTWSVA---PIIVISARSDDKDKVDALDAGADDYLTKPFSVEELLARLRSTLRR 123


>gi|241204994|ref|YP_002976090.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858884|gb|ACS56551.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 246

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L    ++ +G       +G +       +  D+I++D+ +    GL 
Sbjct: 6   HILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFVEANAVDLIVLDVMMPGDDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLPKPFAARELLARIKAVLRR 123


>gi|78046084|ref|YP_362259.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034514|emb|CAJ22159.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 769

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N+ + + L+   G+ A    +G  AL      + D++ MD Q+  + G  
Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALASMESTRYDMVFMDCQMPVLDGYA 557

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++ +    +S  + IP++A+TA AM GD ER    G + Y+SKP++       +++++
Sbjct: 558 ATRRWRAMETESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617

Query: 121 GE 122
             
Sbjct: 618 PR 619


>gi|121998947|ref|YP_001003734.1| response regulator receiver protein [Halorhodospira halophila SL1]
 gi|121590352|gb|ABM62932.1| response regulator receiver protein [Halorhodospira halophila SL1]
          Length = 120

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 59/120 (49%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D+    ++    ++  GY   +  +G +AL  A+    D++I D+ + ++ G
Sbjct: 1   MAKILAVDDSASMRQMVTYTLKQQGYEVTEAVDGTDALTKAKAGGFDLVITDVNMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + + ++++     +  P++ +T  +    ++  +  G   ++ KP      + TIKK + 
Sbjct: 61  ITLVRELRGLPAFKFTPILLLTTESAPEKKQEGKAAGATGWLVKPFDPDQLVNTIKKVVR 120


>gi|119776083|ref|YP_928823.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768583|gb|ABM01154.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella amazonensis SB2B]
          Length = 340

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             V++V+D   N+ +   ++    Y      +G  AL LA +  PD+I++D+ +  +SG 
Sbjct: 4   ATVLVVDDTPENIDILVGILGQD-YKVKVAIDGPRALALALKSPPDLILLDVMMPGMSGY 62

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ +++K++     IPVI VTA A   DE +  + G   YI+KP+S  I    +K ++
Sbjct: 63  EVCRRLKQEPMTAHIPVIFVTALAEVADETQGFELGAVDYITKPVSAPIVKVRVKTHL 120


>gi|325282997|ref|YP_004255538.1| response regulator receiver and SARP domain-containing protein
           [Deinococcus proteolyticus MRP]
 gi|324314806|gb|ADY25921.1| response regulator receiver and SARP domain protein [Deinococcus
           proteolyticus MRP]
          Length = 345

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 68/122 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+   +KL   ++  SG+      + +EAL+L +   PD++I D+ +  ++G
Sbjct: 1   MPKILVVDDDAAILKLISVILTRSGHDVRTASHPVEALDLMKVFVPDLVISDVVMPYMTG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L+  ++++ED +L  +P + +++ A + D  R    G + Y+ KP + +     ++  + 
Sbjct: 61  LDFLEKMREDEKLARVPFMLLSSHAERADVRRGMNLGADDYLPKPFTPADLNGAVEARLR 120

Query: 122 EA 123
            A
Sbjct: 121 RA 122


>gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 1054

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 3/116 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ EDN +N KL R  +E  G       NG EA EL +Q+  D+I MDIQ+  ++G+E
Sbjct: 760 KILVAEDNPINQKLIRTTLEQFGADVTLASNGKEAFELRKQNDYDLIFMDIQMPVMNGIE 819

Query: 64  ITKQI---KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            T++I   ++ + L  IP++A+TA A+ GD ER  + G + YI KPI++    + I
Sbjct: 820 ATREILHYEQVNHLPHIPIVALTANALTGDRERYLEAGLDNYIPKPINIPELKQII 875


>gi|296169900|ref|ZP_06851512.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895456|gb|EFG75158.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 226

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +V++++D    ++  R  +   GY  +   +G  AL  A +HKPDV+++D+ L +ISG
Sbjct: 1   MTRVLVIDDEPQILRALRINLSVRGYEVITASSGAGALRAAAEHKPDVVVLDLGLPDISG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++   ++        PVI ++A     D+      G + Y++KP  +  F+  ++  + 
Sbjct: 61  IDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++I+ED+    +     ++  GY       G+   ++A Q   D++I+DI L  I+G
Sbjct: 1   MKKILIIEDDRRIAQNISRTLQEDGYATEVVYEGINGRQMALQPGVDLLILDINLPGING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + ++   E   +P+I +TA     D+      G + Y+ KP  +   +  ++  + 
Sbjct: 61  FEVCRSVRA--EKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|260777959|ref|ZP_05886852.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605972|gb|EEX32257.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 619

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++VED  +N ++ + ++   G       NG+EALE  +Q++ D I+MD  +  + G E
Sbjct: 477 KVLVVEDTRVNQQVIQVMLNLLGLEVDIANNGVEALEYCQQNEVDAILMDCHMPVMDGYE 536

Query: 64  ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            T++I++       +P+IAVTA  +K D ER  + G   ++SKP+      E +
Sbjct: 537 ATQKIRQLEGWAAYVPIIAVTANVIKEDRERCFEIGMNGFLSKPVKPKEIEEAL 590


>gi|260462562|ref|ZP_05810769.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031758|gb|EEW33027.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 239

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D++    L ++  +  G       +G+E   + R+ + D+I++D+ L   SGL
Sbjct: 5   AHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIEMETILRRAQVDLIVLDVMLPGKSGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + ++        P+I +TA     D     + G + Y+ KP      +  I+  +  
Sbjct: 65  ELCRDLRAQ---YSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRR 121


>gi|228907578|ref|ZP_04071435.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL
           200]
 gi|228852070|gb|EEM96867.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL
           200]
          Length = 229

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED  +  +L +D +E +GY      +G + L+       D++I+DI L  I G
Sbjct: 1   MKRILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQ++ +   ++IP++ V+A   + D+ +    G + YI KP S S  +  +  ++ 
Sbjct: 61  YEICKQVRLE---KDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 224

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I GL+
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPRIDGLQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D+     PV+ +TA     D  +    G + Y+ KP +    +  I+  +  
Sbjct: 62  VLQRLRADNNT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|225013067|ref|ZP_03703482.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-2A]
 gi|225002795|gb|EEG40776.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-2A]
          Length = 233

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IVED+     + ++ +  + Y     +NG+E  E  ++   D+ I+D+ +    G 
Sbjct: 6   KKILIVEDDPNFGSILKEYLIINDYDITLAKNGIEGFEKFKKDDFDLCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +++  IP+  +TA  +K D  +  K G + Y++KP    + +  IK  +  
Sbjct: 66  TLAKEIREKNDV--IPIFFLTAKNLKEDVLKGFKIGADDYLTKPFDSDVLLAKIKAILNR 123


>gi|261406973|ref|YP_003243214.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283436|gb|ACX65407.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 246

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++I +D     +L R  +E  GY  L+  +G EA  +  +   D+ ++DI + E+ G 
Sbjct: 11  RTILIADDESDITELLRLFLEREGYRVLEAISGREAWNILHREPVDLAVVDIMMPELDGY 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++  +I+E+  L   PVI ++A     D+      G + +ISKP S    +  IK  +  
Sbjct: 71  QLIARIRENHRL---PVIILSAKNGDVDKVTGLGLGADDFISKPFSPIEVVARIKAQLRR 127


>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 929

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D E+N +L R ++E  G+  +Q  NG+EA++ AR+ + D++ MDIQ+  + G E 
Sbjct: 673 ILLVDDVEINRELARIILEKRGHRVVQAANGLEAVDAARKERFDLVFMDIQMPLMDGFEA 732

Query: 65  TKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           T +I+       LQ +PVIA+TA+A++GD +R    G + YI+KPI        I
Sbjct: 733 TNEIRSFELSQGLQPVPVIAMTAYALQGDRDRCLAAGMDGYIAKPIKEDDLCRVI 787



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEA---LELARQHKP-DVIIMDIQLQEISG 61
           ++V+D  +N +L    +   G   L   +  EA   LE AR  +P  +++ D+Q+ +  G
Sbjct: 530 LVVDDIAINRQLLERFLTRWGMDVLTAGSAEEAFSMLEYARSRRPVQLLLTDLQMPDCDG 589

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +QI+ D    E+ ++ + +   +GD  R R+     Y++KP+  S   E +K  I
Sbjct: 590 WGLVEQIRNDQRYDELKLVLLPSAGKRGDARRCRELKVNGYLTKPVIHSELYEALKAII 648


>gi|189462413|ref|ZP_03011198.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
 gi|189430851|gb|EDU99835.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
          Length = 1466

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN+   +  + ++    Y  L+  NG   +++A +  PD+II DI + + +G+E+
Sbjct: 1209 ILLVEDNDELRRFLKTIL-AESYSILEADNGETGIKIALEQLPDIIISDIMMPQKNGIEL 1267

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++K +     IP+I ++A +    +    + G + YI+KP S +     I   + +
Sbjct: 1268 LNELKNNISTSHIPIILLSAKSSIESKLEGMQYGADDYITKPFSATYLKARIHNLVEQ 1325


>gi|223936386|ref|ZP_03628298.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894904|gb|EEF61353.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 2/107 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I+ED+   ++  +D  E   Y     R+G E L  A    PD++++DI L +++G EI
Sbjct: 6   VLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKMNGYEI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
            + I+   +  ++P+I +TA   + D  R  + G + Y++KP S+  
Sbjct: 66  CRAIRA--KRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRE 110


>gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas
           palustris CGA009]
 gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 224

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +     +  +GY+  +  +G E   L      D +++DI L ++ G+ 
Sbjct: 2   RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +  + +S  + +PV+ +TA     D+ +    G + Y++KP  L   +  I+  +  +
Sbjct: 62  VLEAWRRNS--RAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRS 119


>gi|115359931|ref|YP_777069.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|115285219|gb|ABI90735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
          Length = 223

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        R  +  + Y      NG + L LA     D++++D+ L E+ G E
Sbjct: 2   RILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     ++ PV+ +TA     D+    + G + Y+ KP + + F+  I+  +  A
Sbjct: 62  VLRRLRAQ---KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRA 118


>gi|326938736|gb|AEA14632.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFTLQNALKKQNANIITAQNGLECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|312961965|ref|ZP_07776462.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311283775|gb|EFQ62359.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 223

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED         + ++  GY A   R+G++ L  A +   DVI++D+ + ++ G E+
Sbjct: 3   ILVVEDEPKAGNYLLNGLQELGYSASLARDGVDGLHQALETPFDVIVLDVMMPKMDGWEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +++++++   + PV+ +TA     D  +  + G + Y+ KP S +  +  ++     
Sbjct: 63  LRRLRKET---DTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRR 117


>gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
 gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
          Length = 260

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520]
          Length = 260

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|300869425|ref|ZP_07114010.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300332555|emb|CBN59208.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 358

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 58/117 (49%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++I++D   N  +   L+    Y      +G EA+       PD+I++D+ + E  G+E+
Sbjct: 6   ILIIDDEPDNFDVIETLLSDPDYQLHYAASGQEAIASLDTFNPDLILLDVMMPETDGIEV 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +QIK  S+ Q +P++ VTA + K D       G + +I+KP++       +   + 
Sbjct: 66  CRQIKAMSKWQAVPIVMVTALSSKSDLAYCLTAGADDFITKPVNAIELRARVHSMLR 122


>gi|253569328|ref|ZP_04846738.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251841347|gb|EES69428.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1324

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVEDN+  +      +    Y  +   NG+EAL++      +++I DI + E+ GLE+
Sbjct: 1082 VLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHEYINLVISDIMMPEMDGLEL 1140

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K + +   IP+I +TA      +    + G +AYI KP S+      +   +
Sbjct: 1141 CEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLL 1196


>gi|229550945|ref|ZP_04439670.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315770|gb|EEN81743.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 258

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED+     L   ++  +GY      N   A +L +  + D+++ DI + ++ G +
Sbjct: 37  KILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGYQ 96

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++++       IP++ +TA      +E+    G + Y+ KPI+ +  +  IK  +  A
Sbjct: 97  FAQELRRTD--PSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRA 154


>gi|228943732|ref|ZP_04106134.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976242|ref|ZP_04136721.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977716|ref|ZP_04138102.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228782014|gb|EEM30206.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228783487|gb|EEM31587.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228815951|gb|EEM62174.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 883

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 763 KTILIVDDDHRNIFTLQNALKKQNANIITAQNGLECLEILKSNTNIDLILMDIMMPNMDG 822

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 823 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881


>gi|256378007|ref|YP_003101667.1| multi-sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255922310|gb|ACU37821.1| multi-sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 1370

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 55/116 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++ +DN    +    L+ ++GY      +G  ALE  R   PD+++ D+ +  + GL
Sbjct: 608 ARVVVADDNADMREYLTRLLRSAGYRVRAVADGRAALEEVRARTPDLVVTDVMMPRLDGL 667

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            +   ++ D     +PV+ ++A A +         G + Y+ KP + +  +  ++ 
Sbjct: 668 GLVAALRADQRTAGVPVVLLSARAGQEASIEGLAAGADDYLVKPFAAADLLARVRA 723


>gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1210

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 67/118 (56%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ +D   N ++   L+   G    +  NG EAL L +Q +PD+I MD+++  + G +
Sbjct: 996  RIIVTDDKPENRQILVKLLTFPGLEVREVENGQEALTLWQQWQPDLIWMDMRMPIMDGYQ 1055

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             T+QI+  S+ Q   +IA+TA+A K D     + GC  Y++KP  +      +++Y+G
Sbjct: 1056 ATQQIRCQSDSQTPIIIALTAYASKSDRASALEAGCNDYVTKPFQVETLFAKMEEYLG 1113


>gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5]
 gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5]
 gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella
           boydii ATCC 9905]
 gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167]
 gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9]
          Length = 260

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|148242058|ref|YP_001227215.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147850368|emb|CAK27862.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 242

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M K   + +V+D+    +L    +   GY      +G +        +PD++++D+ +  
Sbjct: 1   MAKQQTIWVVDDDSELRQLLSTYLSEQGYEVRTLNDGKQFTARLEFQRPDLVVLDLMMPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL I ++++      ++PV+ +TA     D     + G + Y++KP         I+ 
Sbjct: 61  DDGLTILRRLR--DGGDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFMPRELSARIEA 118

Query: 119 YIGE 122
            +  
Sbjct: 119 VLRR 122


>gi|77917975|ref|YP_355790.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544058|gb|ABA87620.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 224

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++IVED      L  D +  + +      +G+  +   R + P +I++D+ L    
Sbjct: 1   MNERILIVEDESRLSSLLADYLRQANFEPHILADGLPVVSWVRDNHPSLILLDLMLPGRD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI K+I+      ++P+I VTA   + D     + G + YI KP S    +  +K  +
Sbjct: 61  GMEICKEIR---GFSDVPIIMVTARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|29348306|ref|NP_811809.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340210|gb|AAO78003.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1326

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            V+IVEDN+  +      +    Y  +   NG+EAL++      +++I DI + E+ GLE+
Sbjct: 1082 VLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHEYINLVISDIMMPEMDGLEL 1140

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K + +   IP+I +TA      +    + G +AYI KP S+      +   +
Sbjct: 1141 CEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLL 1196


>gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241]
 gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241]
          Length = 221

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++EDN    +L R+ +    +       G E + L +++  D++++D+ L +I G
Sbjct: 1   MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I K ++  S   ++P+I +T    +  E +  + G + YI+KP   ++F++ ++  + 
Sbjct: 61  YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 229

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60
           ++KV+++ED E         ++ +GY  ++   G +AL   +++    V ++DI L  I 
Sbjct: 1   MRKVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGID 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++I+      +I +I +TA   + D+      G + Y++KP S +     +    
Sbjct: 61  GFEVCRRIRAMDN--KIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALF 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121]
          Length = 224

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + + +IV+D+   +      +E   +      NG EAL     H+ D+ I+DI +  + G
Sbjct: 1   MNRCLIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLDNHQVDIAIVDIMMHGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   IKED    ++PVI +TA     D+ER    G + Y++KP  +   +  IK  + 
Sbjct: 61  FELCHMIKED---YDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
          Length = 228

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++I+ED E         ++  GY      +G   LE A     DVI++D+ L E++G
Sbjct: 1   MSRILIIEDEENLANFVNLELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ ++++E   L++ P+I +TA     D       G + YI KP ++   +  ++  + 
Sbjct: 61  IEVARRVRE---LKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|255010809|ref|ZP_05282935.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis 3_1_12]
 gi|313148611|ref|ZP_07810804.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides fragilis 3_1_12]
 gi|313137378|gb|EFR54738.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides fragilis 3_1_12]
          Length = 1331

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +  + Y      NG EAL + +++ P++II DI + E+ G 
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E+   IK D E   IP+I +TA   + +     K G + YI KP ++ I   T+   +  
Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATVANLLTN 1187

Query: 122  EA 123
             A
Sbjct: 1188 RA 1189


>gi|238063370|ref|ZP_04608079.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. ATCC 39149]
 gi|237885181|gb|EEP74009.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. ATCC 39149]
          Length = 1347

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN    +    L+  S +  +   +G+EAL  A +   D+++ D+ +  + G  
Sbjct: 646 RILLADDNADLREHVARLLCPS-WEVVAVPDGVEALRRAMETPFDLVLTDVMMPRLDGFG 704

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           +   ++ D   + +P++ ++A A   +       G + Y++KP S    +  ++ 
Sbjct: 705 LVTALRADPRTRHVPIVLLSARAGSAEAVAGLAVGADDYLTKPFSSQELIARVRA 759


>gi|237718881|ref|ZP_04549362.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451659|gb|EEO57450.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1331

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN+   ++  ++ ++  Y  +   NG E LE      P ++I DI + E+SG E
Sbjct: 1084 KILIVEDNDSLREMLVNIFKSL-YTVITAVNGKEGLEKTCSEMPHIVISDIIMPEMSGTE 1142

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   IK++ +   IPV+ +TA           K G + YI+KP +++I +      +
Sbjct: 1143 LCLAIKQNFDTCHIPVVLLTAKTAIEHNLEGLKMGADDYITKPFNINILLSRCNNLV 1199


>gi|228950120|ref|ZP_04112304.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809543|gb|EEM55980.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|229120612|ref|ZP_04249857.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
 gi|228662897|gb|EEL18492.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 225

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++++D    +++ +  +E  GY  +Q  +G+EAL+   +  PD++I+D+ L +IS
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++SE   +P+I +TA + +         G + YI+KP S    +  +   +
Sbjct: 61  GENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|146283051|ref|YP_001173204.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
 gi|145571256|gb|ABP80362.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
          Length = 243

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED        +  +  +G+   +  +G +AL+       D++I+D+ +  + G E
Sbjct: 18  KLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGWE 77

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      E+PV+ +TA     D  +  + G + Y+ KP + S  +  ++  +  
Sbjct: 78  VLRLVRASGN--EVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 134


>gi|94500275|ref|ZP_01306808.1| CheY-like receiver protein [Oceanobacter sp. RED65]
 gi|94427574|gb|EAT12551.1| CheY-like receiver protein [Oceanobacter sp. RED65]
          Length = 120

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 66/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D+    ++    ++ +G+  L+  +G EAL++A+    D+++ D+ +  ++G
Sbjct: 1   MAKILAVDDSASMRQMVSFTLKGAGHDVLEASDGAEALKIAQGQAVDLVLSDVNMPNMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K +++ S  +  P++ +T  +    +   +  G   +I KP +    + TIKK +G
Sbjct: 61  IELCKNLRQLSSYKFTPILMLTTESAGDKKMEGKSAGATGWIVKPFNPDQLLSTIKKVLG 120


>gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 228

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K+++V+D++  ++L    ++  GY  +   +G EA+       PD  ++I+D+ +  +SG
Sbjct: 2   KILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKL-TTTPDIALMILDVMMPNMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K++++DS   +IP+I V+A     D+ +    G + Y+SKP +    M  ++  + 
Sbjct: 61  IEVIKEVRKDS---DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718]
 gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED        R  +E +GY+   + +G E L LA +++PD  I+DI L   SGLE
Sbjct: 2   RILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAIIDIGLPGKSGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I K ++E   L  +P++ +TA +   D+ +  + G + Y++KP  +      ++  +  A
Sbjct: 62  IIKALRERGSL--LPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELQARVRALLRRA 119


>gi|47564964|ref|ZP_00236008.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
 gi|47558337|gb|EAL16661.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|329962237|ref|ZP_08300243.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328530345|gb|EGF57222.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1326

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDNE  +++   L+    Y      NG E L  A + +P++I+ DI + E+SG+E+
Sbjct: 1074 ILVVEDNEELLQILTSLLSPL-YRVSIAMNGKEGLRKAMEERPELILSDIMMPEMSGIEM 1132

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
              +IK + EL  IPV+ +TA      +    + G + YI KP +  + +  I   I 
Sbjct: 1133 CSKIKNNFELCHIPVVLLTALTSDNKKMEGLQCGADDYIEKPFNNKMLLGHIANIIR 1189


>gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 240

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED+     +    +    Y  + + +G E L L  Q   D +I+D+ L  + GL
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +  +  P+I  +A + +       + G + Y++KP S+   +  +K  +  
Sbjct: 65  EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122


>gi|325479309|gb|EGC82405.1| putative transcriptional regulatory protein OmpR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 232

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IV+D +   +  +  ++  GY  ++  +G EA+++    KP V I+DI L  ISG E
Sbjct: 5   KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEAEKPAVAILDIMLPGISGYE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I++ S +    +I V+A +   D+    + G + YI KP +    +  I+  +  
Sbjct: 65  VCERIRDISPMTG--IIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRIRSLMRR 121


>gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 307

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +    + +E SG+  L   +G  AL +A +  PD+I++D  +  + G + 
Sbjct: 11  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDIILLDAVMPGMDGFDT 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++K ++ + ++PV+ +T         R  + G   Y++KPI++      I+ ++  A
Sbjct: 71  CTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129


>gi|197121057|ref|YP_002133008.1| response regulator receiver protein [Anaeromyxobacter sp. K]
 gi|196170906|gb|ACG71879.1| response regulator receiver protein [Anaeromyxobacter sp. K]
          Length = 123

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 66/120 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++V+D+   + + R ++  S Y  +  R+G E +E AR  +PD+I+MD+ +  + G 
Sbjct: 4   KKILLVDDSSTVLLMERMILAKSAYDVVTARDGQEGIEKARAERPDLILMDVVMPRMDGF 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E  ++++E  E   IPVI VT        E     GC  Y++KPI+    +  ++  +G+
Sbjct: 64  EACRKLREHEETAAIPVIMVTTRGELASVETGYASGCTDYVTKPINGLELLAKVRSCLGQ 123


>gi|158339143|ref|YP_001520320.1| response regulator receiver domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158309384|gb|ABW31001.1| response regulator receiver domain protein [Acaryochloris marina
           MBIC11017]
          Length = 149

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 61/117 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D E    +   L+   GY      +G  A++     +PDVI++D+ + ++ G+E+
Sbjct: 8   ILVIDDEERVFDVIEGLLLREGYQLTYAASGPAAIQQMDSLQPDVILLDVMMPQMDGIEV 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +QIK +   + IP+I VTA   K D  R    G + +ISKPI+       ++  + 
Sbjct: 68  CRQIKANPNWKHIPIIIVTALTSKEDLARSLDAGADDFISKPINSLELRARVRSMLR 124


>gi|320162405|ref|YP_004175630.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
 gi|319996259|dbj|BAJ65030.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
          Length = 128

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 78/118 (66%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN  N++L R L+E +G+  +   +G++ LE AR  KPD++++D+ L E+ G  
Sbjct: 6   RILVIEDNADNLELVRFLLEQAGFQIISAMDGLDGLEKARSLKPDLVLLDMSLPELDGWH 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + KQ+KE  E   I ++A+TA  + GD  R  + GC+ +ISKP++++ F   I++Y+ 
Sbjct: 66  LAKQLKESPETAHILIVALTAHTLPGDRRRALEAGCDGFISKPLNVARFASQIQEYLR 123


>gi|315920019|ref|ZP_07916259.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313693894|gb|EFS30729.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1427

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289


>gi|299148477|ref|ZP_07041539.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298513238|gb|EFI37125.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1430

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289


>gi|298482118|ref|ZP_07000306.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298271675|gb|EFI13248.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1430

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289


>gi|298482890|ref|ZP_07001072.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
 gi|298270862|gb|EFI12441.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
          Length = 1336

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y      NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 1071 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1129

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+ + IK + E   IPVI +TA   + D     + G + Y+ KP ++ I    +   +  
Sbjct: 1130 ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1189

Query: 122  EA 123
             A
Sbjct: 1190 RA 1191


>gi|295086722|emb|CBK68245.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1455

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1196 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1254

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1255 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1314


>gi|294643100|ref|ZP_06720934.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294808952|ref|ZP_06767676.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|292641559|gb|EFF59743.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294443833|gb|EFG12576.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1401

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1142 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1200

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1201 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1260


>gi|293369330|ref|ZP_06615915.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292635497|gb|EFF54004.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1401

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1142 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1200

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1201 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1260


>gi|291548314|emb|CBL21422.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 222

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K  +++VED+     L    ++T  Y  L   NG  A+  A  H PD++++D+ L ++
Sbjct: 1   MNKTLILVVEDDRPIRNLIVTTLKTHDYKYLAAENGASAILEASSHNPDIVLLDLGLPDM 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G+E+ K+I+       +P+I ++A +   D+      G + YI+KP S+   +  I+
Sbjct: 61  EGVEVIKKIR---TWSNMPIIVISARSEDMDKIEALDAGADDYITKPFSVEELLARIR 115


>gi|260361519|ref|ZP_05774566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
 gi|308112856|gb|EFO50396.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
          Length = 229

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 4/118 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D+     L ++++   G+   +  +G   L        D+I++D+ + +++G+E 
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS-DIDLILLDVMMPKLNGMET 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K+++E+ E    PV+ +TA   + D     + G + Y+ KP S    +  I+  +  
Sbjct: 63  LKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117


>gi|260171706|ref|ZP_05758118.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1398

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1142 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1200

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1201 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1260


>gi|237721244|ref|ZP_04551725.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229449040|gb|EEO54831.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1430

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289


>gi|237714196|ref|ZP_04544677.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262408426|ref|ZP_06084973.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229445688|gb|EEO51479.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262353978|gb|EEZ03071.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1430

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289


>gi|229028788|ref|ZP_04184892.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
 gi|228732520|gb|EEL83398.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
          Length = 883

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E L++ + +   D+I+MDI +  + G
Sbjct: 763 KTILIVDDDHRNIFALQNALKKQHANIITAQNGIECLDILKNNTNIDLILMDIMMPNMDG 822

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 823 YETMEHIRTNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881


>gi|226944602|ref|YP_002799675.1| response regulator [Azotobacter vinelandii DJ]
 gi|226719529|gb|ACO78700.1| response regulator [Azotobacter vinelandii DJ]
          Length = 356

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 8/126 (6%)

Query: 2   LKK-------VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI 54
           +K+       +++V+D   N+++ R  +++  Y  L  ++G  AL+L R  +PD+I++DI
Sbjct: 7   MKRMKDPRHTLLLVDDETTNLQVLRHTLQSD-YRLLFAKDGQTALDLVRSDRPDLILLDI 65

Query: 55  QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            +  +SG E+ K +K+D     IPVI VTA +   +E +    G   YISKP +  I   
Sbjct: 66  MMPGLSGYEVCKALKQDPCTTAIPVIFVTALSEAANERQGLDLGAVDYISKPFNPHIVQA 125

Query: 115 TIKKYI 120
            ++ ++
Sbjct: 126 RVRTHL 131


>gi|298492568|ref|YP_003722745.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298234486|gb|ADI65622.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 509

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+E+ +++   L+    Y+    R+G  A EL    + D+I++D+ L ++ G+ 
Sbjct: 2   RILLVDDDEIIVEVLTKLLVQQNYVVDVARDGEAAWELVEGFQYDLILLDVMLPKLDGIS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             ++++E      + V+ +TA     D+ +    G + Y+ KP ++      +      
Sbjct: 62  FCRRLREQK--SPVLVMLLTACDTTTDKLQGLDRGADDYVVKPFNVQELAARVPALTRR 118



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EISG 61
            KV+ V+D+   +   + L+E  G       N     E    ++P+ +I+DI +     G
Sbjct: 375 AKVLAVDDDPQILLTVQTLLEPLGVQLTYLTNPDRFWETVPYNQPEFLILDIYMPSGTEG 434

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ + + ++ +   +P++ +++       ++    G + Y++KPI     +  I   + 
Sbjct: 435 LDLCRAVGQNDDWNWLPILFLSSCTDVETLQKAFVIGADDYLTKPIVPKELLIRISNGLQ 494

Query: 122 E 122
            
Sbjct: 495 R 495


>gi|196035114|ref|ZP_03102520.1| sensor histidine kinase/response regulator [Bacillus cereus W]
 gi|195992178|gb|EDX56140.1| sensor histidine kinase/response regulator [Bacillus cereus W]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|160886963|ref|ZP_02067966.1| hypothetical protein BACOVA_04977 [Bacteroides ovatus ATCC 8483]
 gi|156107374|gb|EDO09119.1| hypothetical protein BACOVA_04977 [Bacteroides ovatus ATCC 8483]
          Length = 1427

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +KV+I+ED+    +  R+ I    +      +G    E AR +  D+II D+ +  ++G 
Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            E+TK++K D +   IP+I +TA           + G +AYI+KP S+ + +  + + I +
Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289


>gi|74318569|ref|YP_316309.1| response regulator receiver domain-containing protein [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058064|gb|AAZ98504.1| Response regulator receiver domain protein (CheY) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 121

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 62/116 (53%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D+        +L+  +GY+     +G EA+  A+Q  PD+I+MD+ +  ++G +
Sbjct: 5   RILVVDDSPTERFFLSELLVKNGYLVSMAESGEEAVAQAKQTLPDLIVMDVVMPGMNGYQ 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T+ I ++   + IPVI  T    + D+    + G +AY+ KP+     +  IK  
Sbjct: 65  ATRMISKEEATKHIPVIMCTTKGQETDKVWGMRQGAKAYLVKPVKPEDLLSQIKAL 120


>gi|52144326|ref|YP_082503.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977795|gb|AAU19345.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 896

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|317477866|ref|ZP_07937052.1| two component regulator propeller [Bacteroides sp. 4_1_36]
 gi|316906002|gb|EFV27770.1| two component regulator propeller [Bacteroides sp. 4_1_36]
          Length = 1360

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++V+D+       R L+    Y  +   N  +AL+   +  PD+++ D+ +    G +
Sbjct: 1114 TLLVVDDDTEVAHYLRTLLSAH-YKVICRFNADDALKALHEESPDLVLSDVVMPGKDGYQ 1172

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++IKED +L  +PVI VTA A   ++      G +AY++KP   +  +  IK  +
Sbjct: 1173 FCREIKEDLQLCHLPVILVTAKATVENQVEGLDTGADAYVTKPFDPAYLLALIKSLL 1229


>gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVEDN   ++  + ++E   +     R+G EAL LA+Q+  D+I++D+ L E+ G  
Sbjct: 2   KLLIVEDNVSLLESMKRMLEDE-FEVETARDGEEALYLAQQNIFDIILLDVMLPEMDGFS 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I K +++D    E PV+ VTA     D     + G + YI KP   +     I+  +  +
Sbjct: 61  ILKTLRKDRV--ETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRS 118


>gi|91978329|ref|YP_570988.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91684785|gb|ABE41087.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 309

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 64/119 (53%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +++  D ++ +G   +   +G  A+ +  Q  PD+I++D  +  + G E 
Sbjct: 11  VLVVDDSPETLRMLTDALDGAGMTVMVALDGAAAMRIVEQITPDIILLDAMMPGLDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K +  + ++PVI +T         R  + G   Y++KPI ++  +  I+ ++G A
Sbjct: 71  CRRLKRNPGVSDVPVIFMTGLTESEHIVRGLEAGGVDYVTKPIVIAEMLARIRVHLGNA 129


>gi|308185491|ref|YP_003929623.1| two-component system regulatory protein [Pantoea vagans C9-1]
 gi|308055771|gb|ADO07941.1| two-component system regulatory protein [Pantoea vagans C9-1]
          Length = 231

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            K+V+I+ED+     +    ++   Y  +   +G   LE A + +PD+I++DI L  ++G
Sbjct: 3   SKRVLIIEDDADAAGVLEAYLKRENYEVMIAGDGPGGLETAGRWQPDLILLDIMLPGMNG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+   ++      + PVI VTA     D     + G + Y+ KP      +  ++  + 
Sbjct: 63  TEVLAALRRRD---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119

Query: 122 EA 123
            +
Sbjct: 120 RS 121


>gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 315

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 58/116 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ SG+  L   NG  AL  A + +P +I++D  +  + G E+
Sbjct: 14  VLIVDDVPDNLAVLHDALDESGFTVLVANNGEAALVAAIEAQPGIILLDAIMPGMDGFEV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D   + IP+I +T            + G   YI+KPI     +  I  ++
Sbjct: 74  CRKLKADINTRHIPIIFMTGLTESEHVVAAFQAGGTDYITKPIRAIEVLARIDAHM 129


>gi|187778014|ref|ZP_02994487.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC
           15579]
 gi|187774942|gb|EDU38744.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC
           15579]
          Length = 223

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED+    KLF  ++  +GY +++ ++G  AL++  +   D+II DI +  + G
Sbjct: 1   MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKEYIDLIISDIMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +TK I+E +    +P++ +TA     D++   + G + Y+ KPI ++  +  +   + 
Sbjct: 61  YTLTKLIRESNN--NVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|160937479|ref|ZP_02084840.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439548|gb|EDP17298.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 233

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K++ + +D      L +  +   GY      +G    E      PD+II+DI +  + 
Sbjct: 1   MAKRIYVADDELHIRTLIQTFLVNEGYEVETFEDGKSLFEAFHASCPDLIILDIMMPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  +   I+ +S    +P+I V+A     D       G + Y+ KP      +  +K   
Sbjct: 61  GFALCTAIRRESR---VPIIIVSAKDAPMDRVTGITLGSDDYMVKPFLPLELVARVKALF 117

Query: 121 GEA 123
             A
Sbjct: 118 RRA 120


>gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++++D    +++ +  +E  GY  +Q  +G+EAL+   +  PD++I+D+ L +IS
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++SE   +P+I +TA + +         G + YI+KP S    +  +   +
Sbjct: 61  GENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|158521557|ref|YP_001529427.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510383|gb|ABW67350.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 545

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+DN +N K+   ++           NG +A+    +   D++ MD  +  + G E T
Sbjct: 429 LVVDDNPVNRKVLVAMLTRHKISCDVVENGKQAVAACARKHYDLVFMDCLMPVMDGYEAT 488

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           K+I+E    + +P+IA+TA  +    +R    G   YI+KP  +   ++   +Y+ E+
Sbjct: 489 KKIRE--ARKALPIIAITADVVPETRDRCLAAGMNDYITKPFKMQDLLDMTDRYLKES 544



 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 13/122 (10%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL----ARQHKPDVIIMDIQLQEI 59
           + ++V D+    K+    I   G +     +  +A++     AR    D +I D     +
Sbjct: 276 RCLVVGDDPTGHKVLDWYIHRWGGVCKHCDSRKDAVQWLETSARALPFDAVITDF----L 331

Query: 60  SGL-----EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114
            G       I   I++++    +P++ +      GD   +R  G  AY++KP+       
Sbjct: 332 HGNPHKYKTIAAAIRQEACAATVPLLCLIPRERTGDASFLRHYGYHAYLTKPVRQVHLYN 391

Query: 115 TI 116
            +
Sbjct: 392 AL 393


>gi|29376802|ref|NP_815956.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
 gi|256960861|ref|ZP_05565032.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
 gi|2500744|sp|Q47744|VANR_ENTFA RecName: Full=Regulatory protein vanRB
 gi|1209526|gb|AAB05622.1| response regulator [Enterococcus faecalis]
 gi|29344267|gb|AAO82026.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
 gi|256951357|gb|EEU67989.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
          Length = 220

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  ++++VED++      R  +  + Y      +G EA     ++   ++I+DI L  ++
Sbjct: 1   MSIRILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ ++ +  +   + P++ +TA +   ++ R      + Y++KP  + I ++ ++  +
Sbjct: 61  GHELLREFRAQN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALL 117

Query: 121 GEA 123
             +
Sbjct: 118 RRS 120


>gi|71898251|ref|ZP_00680425.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71731990|gb|EAO34047.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 394

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++EDN        D +E  G+      +G+  L LA  H+ D I++D+ L  + G+E
Sbjct: 171 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 230

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ +   ++ PV+ +TA     ++      G + Y+ KP +L      +      
Sbjct: 231 VCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 288


>gi|332876711|ref|ZP_08444469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685270|gb|EGJ58109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 232

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E    + +  +E  GY      +  EAL++    K  ++++D+ + EISG +
Sbjct: 6   RILVVDDEEDLCDILKFNLENEGYEVETANSAEEALKM-DLTKFHLLLLDVMMGEISGFK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K +K+  E ++IP+I +TA   + D       G + YISKP SL      IK  +  
Sbjct: 65  MAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVLRR 123


>gi|301052639|ref|YP_003790850.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374808|gb|ADK03712.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 896

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|282882097|ref|ZP_06290738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
 gi|281298127|gb|EFA90582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
          Length = 229

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++VED E   K  +  +E  GY   +  +G E +++AR  +P ++++DI L  + 
Sbjct: 1   MAVKILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           G  + K +++  E   + +I +TA A   D+    + G + Y++KP + +     IK 
Sbjct: 61  GFAVCKVLRK--EFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKS 116


>gi|229100480|ref|ZP_04231337.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|228682935|gb|EEL36956.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 231

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++ED+          ++ +G+  L+T  G +ALEL  QH  D++I+D+ L  I G
Sbjct: 1   MTTILVLEDDITIRSFITLNMKRAGFNVLETDTGEKALELLEQHNVDIVILDVMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K I++++E  +I +I +TA   + D+      G + YI KP S+   +  ++  + 
Sbjct: 61  FRVCKSIRKNNE--DIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLR 118

Query: 122 E 122
            
Sbjct: 119 R 119


>gi|227832502|ref|YP_002834209.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183632|ref|ZP_06043053.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453518|gb|ACP32271.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 228

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+    ++   ++E  G   +   +G EA+   R+H PD+I++D+ L  ++
Sbjct: 1   MAPKILVVDDDPAIAEMLTIVLEAEGLEPIAVNDGNEAIPAFREHDPDLILLDLMLPGMN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111
           G++I + I+ +S    +P++ +TA     D     + G + YI+KP     
Sbjct: 61  GVDICRAIRTES---SVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKE 108


>gi|218902190|ref|YP_002450024.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
 gi|218536450|gb|ACK88848.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
          Length = 896

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|12964068|emb|CAC29256.1| putative regulatory protein [Bartonella quintana]
          Length = 240

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + +++V+D+   +      +ET GY      +G  AL+    H P + I DI++  + G
Sbjct: 8   TQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDIKMPRMDG 67

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +++++ S   +IPVI +T+   + DE    K G + +I+KP S  + +E +K  + 
Sbjct: 68  MELLRRLRQKS---DIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILR 124

Query: 122 EA 123
            A
Sbjct: 125 RA 126


>gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 224

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED     +   + +  +GY+     NG++ L LA + + D+I++D+ + E+ G  
Sbjct: 2   RILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVMMPEMDGWS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K++       + PV+ ++A     D  +    G + Y+ KP S +  +  I+  +  
Sbjct: 62  VMKKL---GARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRR 117


>gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 229

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+++ED+     L  + +    YI     +    L+       D++I+D+ L  + GL 
Sbjct: 2   KVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + I++      +P++ +TA     D+      G + Y+ KP  L   +  ++  +  
Sbjct: 62  FCQTIRQRGH--SLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRR 118


>gi|300727408|ref|ZP_07060817.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
 gi|299775288|gb|EFI71887.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
          Length = 1268

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN        +++    Y  +   NG   L+ A    PD II D+ +  + GL 
Sbjct: 1013 KLLIVEDNNDLRSFLTEIL-RVNYEVISAENGKIGLQRAVDELPDFIITDVMMPVMDGLS 1071

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            +  QIK++ ++  IPVI ++A A   D  +  + G + YI+KP S +     I+  I +
Sbjct: 1072 MVHQIKQNKDICHIPVIVLSAKASLEDRLQGLQEGIDDYITKPFSATYLKRRIENIISQ 1130


>gi|291523694|emb|CBK89281.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 231

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED+E      + L+E  GY      NG++ L+   +    ++IMDI +  +SG
Sbjct: 1   MYKILIVEDDETIRNGIKTLLELQGYYVDIAVNGVDGLKKFDE-TYSLVIMDIIMPLLSG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           ++  K+++E+S    +P++ +TA + + D  +  + G + Y+ KP S    +  +K  + 
Sbjct: 60  IDACKKLREES---SVPILFLTAKSSEIDIMQGFEVGGDDYLVKPFSNMELISRVKALLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|307731198|ref|YP_003908422.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585733|gb|ADN59131.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 246

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V+IV+D+ +   L    ++++G+ A    +G        + +P V+++DI +    
Sbjct: 1   MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL     ++   +  +IPVI VTA     D       G + Y++KP      +  I   +
Sbjct: 61  GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
 gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
          Length = 228

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D++  ++L    ++  GY  +   +G EAL     +    ++I+DI + ++SG+
Sbjct: 2   KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSGI 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K++++DSE   IP++ V+A     D+ +    G + Y+ KP +    M  ++  +  
Sbjct: 62  EVIKEVRKDSE---IPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118

Query: 123 A 123
           +
Sbjct: 119 S 119


>gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 227

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED      L R  +   G+     R+G   L  AR+ +P   ++DI L  ++G EI
Sbjct: 10  VLVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARRLRPVACVLDIALPGLAGTEI 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++   +    PVI +TA   + D     + G + Y++KP S    +  ++  +  
Sbjct: 70  CRRLRAAGDW--TPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRR 125


>gi|264678133|ref|YP_003278040.1| response regulator receiver protein [Comamonas testosteroni CNB-2]
 gi|262208646|gb|ACY32744.1| response regulator receiver protein [Comamonas testosteroni CNB-2]
          Length = 173

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-IS 60
           +KK++IVED+    KL R  +E   +   +   G EA E+ ++ KPDV+++D+ +   +S
Sbjct: 51  MKKILIVEDHADIRKLIRMTLEFRDFEVQEVATGDEAWEVTQRTKPDVVLLDVMMPGKLS 110

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           GLE+ + IK+  +L++  VI +TA     D +     G + Y+ KP S    +E I+  
Sbjct: 111 GLEVCQLIKDSDDLRDTQVIMLTARGSADDRQAGLNAGADEYLVKPFSTLKLLEVIESL 169


>gi|228913678|ref|ZP_04077305.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845966|gb|EEM90990.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 896

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|228932403|ref|ZP_04095285.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827339|gb|EEM73091.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 896

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|227873737|ref|ZP_03991967.1| response regulator [Oribacterium sinus F0268]
 gi|227840417|gb|EEJ50817.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++IVED     +L +D +E SG+      +G + L+ A +   D++I+D+ L    G 
Sbjct: 5   KKILIVEDEASIAELEKDYLELSGFQVETEGDGEKGLKKALEGNYDLLILDLMLPGRDGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            IT++++     ++IP++ V+A     D+ R    G + Y++KP S S  +  +K ++  
Sbjct: 65  SITQEVRSK---KDIPILLVSARRDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLAR 121


>gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
 gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
          Length = 230

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++ IVED     +  +  +E  G+      NG  A E   Q   D++++D+ L  + G+ 
Sbjct: 6   RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I K+++E   +  +P+I +TA     D+      G + Y++KP ++   M  I+  + +
Sbjct: 66  ICKRVRE---VSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRK 121


>gi|327480105|gb|AEA83415.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           DSM 4166]
          Length = 222

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           VMIV+D   N+ L    ++ +GY+ L   +G  ALE  ++ KPD++++D  +  + G E 
Sbjct: 13  VMIVDDVPDNLALLSGALDQAGYMVLVALDGSSALERMQRLKPDIVLLDAMMPGLDGFET 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++IK    L+++PV+ +TA           + G   Y++KPI     +  +  ++  A
Sbjct: 73  CRRIKAQPMLEDVPVLFMTALTESEHVLEGFEAGGIDYVTKPIHTEQVLARVAAHLRTA 131


>gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 226

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN   +++ ++  E   Y       G   L  AR  + D I++D+ L  + G E
Sbjct: 2   KLLVIEDNHDLVQVLQEGFEEHDYAVEAAYEGETGLNRARSGEFDCIVLDVMLPGMDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +  + +E+    + PVI +TA     D       G + Y+ KP      +  +   I  
Sbjct: 62  LIDRFREEGH--DTPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALIRR 118


>gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 221

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+D+    ++   ++E  G  A   R+G + +      +PD++++D+ L  + G+ + 
Sbjct: 2   LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLMLPGMDGMSVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +QI+       +P+I +TA +   D       G + Y++KP      +  IK  +  
Sbjct: 62  RQIRA---TSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRR 115


>gi|295097772|emb|CBK86862.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 153

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +++++IVED +   +  +  +   GY A    NG + L  A + + D+II+D+ L  + G
Sbjct: 1   MQRILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +I   ++E    +  PV+ +TA     D+ +  + G + Y+ KP   +  +  ++  + 
Sbjct: 61  WQIISALRESGHEE--PVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLR 118

Query: 122 EA 123
            A
Sbjct: 119 RA 120


>gi|257886294|ref|ZP_05665947.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257822150|gb|EEV49280.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 222

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++VED+     L+R ++E +G+  +   NG +AL+     + ++II DI + ++ G
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++   ++  +   ++PV+ +TA A   +++R  K G + Y++KPI ++  +  ++  + 
Sbjct: 61  YDLVGSLR--NARFDMPVLMITAKADFENKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp.
            succinogenes S85]
 gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp.
            succinogenes S85]
 gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
            subsp. succinogenes S85]
          Length = 1329

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 74/120 (61%), Gaps = 2/120 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             K+++VEDNE+N +L   L+ + G   +   NG +ALEL + +  D+++MDIQ+  ++GL
Sbjct: 974  AKILLVEDNEMNQELAVSLLNSVGLATMVAPNGKKALELLKINAFDLVLMDIQMPVMNGL 1033

Query: 63   EITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+ I+  S+   + +P+IA++A A + D +   K G  +YI+KPI   +    + KY+
Sbjct: 1034 DATRAIRNRSDEYFKNVPIIAMSAKAFQKDRDDCLKAGMNSYIAKPIDPMMLYAELAKYL 1093



 Score = 80.9 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 58/130 (44%), Gaps = 15/130 (11%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH------KPDVIIMDIQL 56
           K V++V+D E    + R  +     +  +  +  EAL+L + H        D+ I+D Q+
Sbjct: 830 KNVLLVDDCERLRSVLRHYLTKLRCVVEEAASVDEALDLIQAHEEAGETPYDLFIVDYQM 889

Query: 57  QEISGLEITK----QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
             ++G +  +     +++  ++   P+        + +     + G  + ++KP+ +S  
Sbjct: 890 PLMNGFDFVQGLPANMRKIPKILMHPIHF-----DEHNYHLATEIGFNSCVAKPLQISSL 944

Query: 113 METIKKYIGE 122
           +  +++ + E
Sbjct: 945 LSAMQEAVDE 954


>gi|13475585|ref|NP_107149.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14026337|dbj|BAB52935.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 130

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 61/120 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+I +D+ L ++L    +   GY  +   +G EAL  A QH PD+I++D  + +  GL
Sbjct: 6   ARVLICDDDPLLLELMEFRLRAKGYEVITAVDGAEALAKAEQHGPDIIVLDAMMPKADGL 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+  ++K D  L + PV+ +TA   + D     + G + Y+ KP      +  + + I  
Sbjct: 66  EVLARLKGDPVLSDTPVVMLTARKAERDIVSALEKGADDYLVKPFIPEELLARLARLIAR 125


>gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  ++++EDN    +L R+ +    +       G E + L +++  D++++D+ L +I G
Sbjct: 1   MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I K ++  S   ++P+I +T    +  E +  + G + YI+KP   ++F++ ++  + 
Sbjct: 61  YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|150017893|ref|YP_001310147.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904358|gb|ABR35191.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV+IV+D    +++ +  +E  G I  +  +G + LE+  +  PD+I++D+ L +++G 
Sbjct: 5   KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI   +++ S    +P+I +TA   +         G + YI+KP S    +  I      
Sbjct: 65  EICSIVRKRSR---VPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRR 121


>gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437]
          Length = 249

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ED+     L  + + +  Y      NG++ +   ++     +I+D+ L ++ G++
Sbjct: 17  HILLIEDDPDISCLIAETLWSENYEVDVAENGLDGISYLKKKDYHAVILDLMLPDLDGID 76

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+E    + +PVI +TA   + D       G + Y++KP S+      ++ ++  
Sbjct: 77  VLRHIRES---RNVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRR 132


>gi|332529947|ref|ZP_08405898.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040644|gb|EGI77019.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 250

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 1   MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA------RQHKPDVIIMD 53
           M    ++++ED+     + RD +  SG+       G   L          +  P +I++D
Sbjct: 1   MSPTPLLMIEDDARLAAMVRDYLAPSGFAVQHAGTGAAGLAKLGASPQGAEQAPQLIVLD 60

Query: 54  IQLQEISGLEITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           + L ++ GL+I ++I+         P++ +TA     D     + G + Y++KP      
Sbjct: 61  LMLPDMDGLDICRRIRSLPGATAHTPILMLTAKGDPMDRVIGLEIGADDYLAKPFEPREL 120

Query: 113 METIKKYIGE 122
           +  ++  +  
Sbjct: 121 LARVRALLRR 130


>gi|217969789|ref|YP_002355023.1| response regulator receiver protein [Thauera sp. MZ1T]
 gi|217507116|gb|ACK54127.1| response regulator receiver protein [Thauera sp. MZ1T]
          Length = 125

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 71/119 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K+++++EDN  N  L R L++  G+   +  +G   L +A +  P +I++DIQL  + 
Sbjct: 1   MNKRILLIEDNAQNRYLARFLLDARGWQVSEAEDGPSGLLIADRTDPAIILLDIQLPGMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           G  + + ++E+  L  +P+IAVT++AM GD E+    GC  YI KPI    F + +++Y
Sbjct: 61  GYAVARGLRENPRLAHVPIIAVTSYAMPGDREQCLAAGCTGYIEKPIDPERFADEVERY 119


>gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I+ED +   +     ++  GY      NG E LE A +   D+I++D+ L E+ 
Sbjct: 1   MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++ +   +   ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
          Length = 1051

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++V+DN +N K+    +  +G+      NG EA+++ R  +  +I+MD  +  + G E
Sbjct: 769 KVLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDMFRTSQYCLILMDCMMPVMDGFE 828

Query: 64  ITKQIKE----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            TKQI++    ++    IP+IA+TA  +  D ++    G + Y+ KP    +  E + K 
Sbjct: 829 ATKQIRQIELKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKADLLKEKLDKA 888

Query: 120 IG 121
           +G
Sbjct: 889 VG 890



 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62
            ++++VEDN +N K+   L+  +GY      NG  A+E+  R    D+I+MD  +  + G 
Sbjct: 931  RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMFQRDGGFDIILMDCMMPVMDGF 990

Query: 63   EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E TKQI+       L++ P+IA+TA  +  D +R    G +AY+ KP+     +  I+  
Sbjct: 991  EATKQIRAYEASLGLEKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLHQIENV 1050

Query: 120  I 120
            +
Sbjct: 1051 M 1051


>gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+V++VED+    +L R  +   GY  +   +G        +   D +++D+ L  I GL
Sbjct: 5   KRVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNWDALVLDLMLPGIDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +   + +  P+I ++A + +       + G + Y++KP S+   +  +K  I  
Sbjct: 65  EICR--RARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRR 122


>gi|120611195|ref|YP_970873.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120589659|gb|ABM33099.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 262

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I ED     ++    +   G   +   +G  AL + +  KPD++++D+Q+  + G ++
Sbjct: 34  VLIAEDEPEIAEILAAYLARGGLQTVHAPDGQAALAMHQALKPDLVLLDVQMPRVDGWKV 93

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I+      + PVI +TA     D+    + G + Y+ KP + +  +  ++  +  +
Sbjct: 94  LSEIRHRG---DTPVIMLTAMDQDIDKLMGLRIGADDYVVKPFNAAEVVARVQAVLRRS 149


>gi|116252485|ref|YP_768323.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257133|emb|CAK08228.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 246

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L    ++ +G       +G +       +  D+I++D+ +    GL 
Sbjct: 6   HILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFVEANAVDLIVLDVMMPGDDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLPKPFAARELLARIKAVLRR 123


>gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
 gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
          Length = 245

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 7/126 (5%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57
           K+++IVED++   +  R+ +   GY     + G EA            K D+I++D+ L 
Sbjct: 13  KRLLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLMLP 72

Query: 58  EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            ++G+E+ +++++++   + P++ V+A   + D     + G + Y+ KP  L+  +   +
Sbjct: 73  NLNGIELCRRVRKNNI--KTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCR 130

Query: 118 KYIGEA 123
             +  +
Sbjct: 131 AILRRS 136


>gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 863

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++VEDN +N KL   +++  GY      +G +A+++ ++   D+I+MD+Q+  + G E
Sbjct: 610 RVLVVEDNLMNQKLVLQVLKHLGYQGQVADDGRKAIDILQKDTFDIILMDLQMPVMDGYE 669

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            T+ I+       +P+IA+TA A+  ++E   K G   ++SKP  +      I+
Sbjct: 670 TTRYIRSKINT-TVPIIAMTAHALPSEKEECLKAGMNDFLSKPFQIEELQLLIR 722


>gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 249

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D +   +L    +   G+      +G  AL  AR+ +PD +++D+ L ++ GL 
Sbjct: 24  RVLVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTAREFRPDAVVLDMMLPDMDGLA 83

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I  +++   EL ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 84  ILGRLRR--ELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 141


>gi|256829206|ref|YP_003157934.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
 gi|256578382|gb|ACU89518.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
            DSM 4028]
          Length = 1050

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED+ +NM   R ++  +G+      NG +A+EL R+ + D+I+MD+Q+  + GLE
Sbjct: 906  RILLAEDDPVNMFAARRILGKAGHAVTPATNGGQAVELLRESEFDLILMDVQMPVMDGLE 965

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             T  I+ D+ L     IP++A+TA+AM GD E+   G  + YI+KP+S     E I   I
Sbjct: 966  ATAMIRGDATLGEKSRIPIVAMTAYAMSGDREKFLAGSMDGYIAKPLSCETLYEIISNVI 1025

Query: 121  GE 122
              
Sbjct: 1026 AR 1027


>gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1233

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +V++VEDN +N     DL+E+ G+  +   NG  ALE    H  DV++MDIQ+  + GL 
Sbjct: 982  RVLLVEDNRVNRVFATDLLESRGHEVILAENGRVALEYLVSHAVDVVLMDIQMPVMDGLA 1041

Query: 64   ITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             T+ I+         +PV+ ++A+AM  + ER    G + YI+KPI +  F   + + + 
Sbjct: 1042 ATRAIRAGHLDIDPGLPVVGLSAYAMDQERERFLAAGFDDYITKPIDVETFFAVVARVLA 1101

Query: 122  E 122
             
Sbjct: 1102 R 1102


>gi|260589381|ref|ZP_05855294.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
 gi|260540462|gb|EEX21031.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
          Length = 239

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 7/126 (5%)

Query: 1   MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M+K     V++VED+     L    +E   Y      NG +A+ LA  + PD+I+MD+ L
Sbjct: 1   MMKGNKPSVLVVEDDVPIRNLITTTLEMEKYKFDTAENGNQAIMLAAANNPDIILMDLGL 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I G+E+ ++I+  S     P+I ++A + + D+      G + Y++KP S++     +
Sbjct: 61  PDIDGIEVIRKIRTWSVA---PIIVISARSDEKDKVAALDVGADDYLTKPFSVTELSARL 117

Query: 117 KKYIGE 122
           +     
Sbjct: 118 RATTRR 123


>gi|190573243|ref|YP_001971088.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011165|emb|CAQ44774.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 246

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    ++  D ++ +G    Q   G     L   H  D++++D+ +    GL 
Sbjct: 6   HILVVDDDSEIRQMLADYLQRNGLRVSQADGGRAMRALMDTHAVDLVVLDVMMPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++   + + +PV+ +TA   + D     + G + Y++KP S    +  I   I  
Sbjct: 66  LCRNLRA-GKHRAVPVVLLTARDDETDRIIGLEMGADDYVTKPFSSRELLARINAVIRR 123


>gi|182677961|ref|YP_001832107.1| two component LuxR family transcriptional regulator [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633844|gb|ACB94618.1| two component transcriptional regulator, LuxR family [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 309

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 60/116 (51%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +    D +E +G   L   +G  AL L  +  PD+I+MD  +  + G E 
Sbjct: 11  VLVVDDSPETLSFLTDALEAAGATVLIAVDGANALALVERITPDIILMDAVMPGMDGFET 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K D  +  +PVI +TA +         + G   Y++KPI+L   M  ++ ++
Sbjct: 71  CRRLKRDKIVTHVPVIFMTALSDTEQIVMGLEAGGVDYVTKPIALDELMARMRVHL 126


>gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 222

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +    ++  +GY      +G EA         D+ ++D+ L ++ GL 
Sbjct: 2   RILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDYDLAVLDLGLPKMDGLA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K+ +     +++PV+ +TA     +       G + Y++KP ++   +  ++  +  A
Sbjct: 62  VLKRWRA--AGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRRA 119


>gi|119896995|ref|YP_932208.1| DNA-binding response regulator CreB [Azoarcus sp. BH72]
 gi|119669408|emb|CAL93321.1| two-component system regulatory protein [Azoarcus sp. BH72]
          Length = 235

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEI 59
           M ++++IV+D      +    + T GY       G +AL   R      ++I+D+ L + 
Sbjct: 1   MSRRILIVDDEPAIADMLAYALRTEGYEPDCVGLGGDALAALRGGADYALVILDVGLPDQ 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           SG ++ + ++ +S   ++PVI +TA + + D     + G + Y+ KP S       ++  
Sbjct: 61  SGFDVCRALRRES---DVPVIFLTARSDEVDRIVGLELGADDYVPKPFSPREVASRVRAI 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 309

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +    + +E SG+  L   +G  AL +A +  PD+I++D  +  + G + 
Sbjct: 13  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDIILLDAVMPGMDGFDT 72

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++K ++ + ++PV+ +T         R  + G   Y++KPI++      I+ ++  A
Sbjct: 73  CARLKANASVAQVPVVFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLSNA 131


>gi|15595606|ref|NP_249100.1| twitching motility protein PilH [Pseudomonas aeruginosa PAO1]
 gi|116054140|ref|YP_788583.1| twitching motility protein PilH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152987748|ref|YP_001345904.1| twitching motility protein PilH [Pseudomonas aeruginosa PA7]
 gi|218889151|ref|YP_002438015.1| twitching motility protein PilH [Pseudomonas aeruginosa LESB58]
 gi|254237356|ref|ZP_04930679.1| twitching motility protein PilH [Pseudomonas aeruginosa C3719]
 gi|254243508|ref|ZP_04936830.1| twitching motility protein PilH [Pseudomonas aeruginosa 2192]
 gi|296386908|ref|ZP_06876407.1| twitching motility protein PilH [Pseudomonas aeruginosa PAb1]
 gi|313111968|ref|ZP_07797757.1| twitching motility protein PilH [Pseudomonas aeruginosa 39016]
 gi|1172507|sp|P43501|PILH_PSEAE RecName: Full=Protein pilH
 gi|9946264|gb|AAG03798.1|AE004478_3 twitching motility protein PilH [Pseudomonas aeruginosa PAO1]
 gi|401795|gb|AAA25950.1| cheY homologue [Pseudomonas aeruginosa PAO1]
 gi|115589361|gb|ABJ15376.1| type IV pilus response regulator PilH [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169287|gb|EAZ54798.1| twitching motility protein PilH [Pseudomonas aeruginosa C3719]
 gi|126196886|gb|EAZ60949.1| twitching motility protein PilH [Pseudomonas aeruginosa 2192]
 gi|150962906|gb|ABR84931.1| twitching motility protein PilH [Pseudomonas aeruginosa PA7]
 gi|218769374|emb|CAW25134.1| twitching motility protein PilH [Pseudomonas aeruginosa LESB58]
 gi|310884259|gb|EFQ42853.1| twitching motility protein PilH [Pseudomonas aeruginosa 39016]
          Length = 121

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 70/119 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+   M     ++E  G+  L+  NG + + LARQ KPDV++MDI +  ++G
Sbjct: 1   MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+Q+ +D+E   IPVI VT    + D+   ++ G   Y++KP+     ++TI   +
Sbjct: 61  FQATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVL 119


>gi|330996105|ref|ZP_08319998.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329573876|gb|EGG55457.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 905

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++V+DN   + +   +     +  L   +G+EA  +  +H  DV+I D+ +  + GLE+ 
Sbjct: 655 LLVDDNADLLDVMHRVF-MCRHKVLLAHDGVEAQSVIEEHAVDVVISDVMMPNMDGLELC 713

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +++K D     IPVI +TA     D     K GC+ Y++KP  L +    ++ ++
Sbjct: 714 RRLKSDINTSHIPVILLTAKNAPEDRVECYKAGCDGYVAKPFELRVLEARVENFL 768


>gi|330821098|ref|YP_004349960.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327373093|gb|AEA64448.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1246

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ +DN         L+  + Y      +G+ AL  A +  PD+++ D+ +  + G 
Sbjct: 603 ARIVVADDNADMRDYLLALLGGA-YRVEAVDDGLRALAAAHREPPDLVLTDVMMPNLDGF 661

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + + ++ ++  +E+PVI ++A A +         G + Y+ KP S    +  I   +  
Sbjct: 662 ALREALRAEAATREVPVIMLSARAGEQARIEAIDAGVDDYLVKPFSARELLARIGAVLER 721



 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 2    LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++V++V+DN+        L+ET G+      +  EAL LA   +PD +++DI L  + G
Sbjct: 1125 SRRVLVVDDNQDAANALAALLETDGHQVTVAYSAPEALALAESLRPDAVLLDIGLPGMDG 1184

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             E+ ++++    L+   +IAVT +    D E     G +A++ KP+++ +     ++ + 
Sbjct: 1185 HEVARRMRASPRLRRAQLIAVTGYGQASDRENSMSAGFDAHLVKPVAVPLL----QRMLR 1240

Query: 122  EA 123
            +A
Sbjct: 1241 QA 1242


>gi|307822326|ref|ZP_07652558.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307736892|gb|EFO07737.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 1187

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 61/118 (51%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++ EDN +N ++  +L+   G       NG  AL+    +  D+++MD+Q+ ++ GL
Sbjct: 839 ARLLLAEDNPINREVALELLHGVGLSVDTADNGRVALDKLGTNSYDLVLMDVQMPDMDGL 898

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             TK I+       +P++A+TA A   D       G   +++KP+   +   T+ +++
Sbjct: 899 AATKAIRAQPGYASLPILAMTANAFDEDRRICLNAGMNDFVAKPVIPQVLYATLLRWL 956



 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEISGL 62
           K++++ED   +  L    +      A   R G +  L+ A Q++ DV++ D  +  +  +
Sbjct: 6   KLLVIEDVPADFLLLERHLRQHSLDAECFRVGSDVELDAALQNEWDVVLSDYNVPGMDFI 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              ++I+  +    +P+I V+    +     +   G   ++ K  SL   +  I + + E
Sbjct: 66  TTLQRIR--TYRPNLPIILVSGSVGEETAVELLHLGMSDFVLKG-SLIRLLPAILRALNE 122

Query: 123 A 123
           A
Sbjct: 123 A 123


>gi|297621363|ref|YP_003709500.1| putative two-component response regulator [Waddlia chondrophila WSU
           86-1044]
 gi|297376664|gb|ADI38494.1| putative two-component response regulator [Waddlia chondrophila WSU
           86-1044]
          Length = 135

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK++I ED  +N ++ + ++E   +      NG EALE+   +  D I+MD+Q+ E+ G 
Sbjct: 15  KKILIAEDYFINQEVTQAILELMEFTVDIAENGREALEMYESNAYDAILMDVQMPEMDGF 74

Query: 63  EITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + T +I++  +  + IP+IA+TA AM GD E+    G + Y+SKPI  S   E +KKYI
Sbjct: 75  QTTAEIRKKEKNGKRIPIIALTANAMSGDREKCLNAGMDDYLSKPIEASKLEEILKKYI 133


>gi|269103004|ref|ZP_06155701.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162902|gb|EEZ41398.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 615

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+  N  + + ++E +G++     NG EA+E  +Q K D ++MD+Q+ E++GL
Sbjct: 488 KKILLVEDSISNQLIAKTILEKNGFVVETALNGREAIEQVQQVKVDAVLMDLQMPELNGL 547

Query: 63  EITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E +  I+        +P+IA+TA A   D E   + G + Y++KPI+    +E ++ ++
Sbjct: 548 EASLAIRRLGGIYTSLPIIAMTANASDKDREECHQAGMDDYLTKPINKQHMLEVLRIWL 606


>gi|168705023|ref|ZP_02737300.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gemmata obscuriglobus
           UQM 2246]
          Length = 246

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++VED     +   D +  SGY   +  +G   L  A     D++++DI L + 
Sbjct: 1   MPKARIVVVEDEPAIRRGVSDALRLSGYEVTEAADGATGLREAGAAGVDLVLLDIMLPKR 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            GLE+  +++  +  +  PV+ +TA   + D  R  K G + Y+ KP S    +  ++  
Sbjct: 61  DGLEVLSELRRTNPTR--PVVLLTARGSEDDRVRGLKMGADDYVVKPFSAKELIARVEAI 118

Query: 120 IGE 122
           +  
Sbjct: 119 LRR 121


>gi|170736487|ref|YP_001777747.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|169818675|gb|ACA93257.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 223

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        R  +  + Y      NG + L LA     D+I++D+ L  + G E
Sbjct: 2   RILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++     ++ PV+ +TA     D+    + G + Y+ KP + + F+  I+  +  A
Sbjct: 62  VLRRLRAQ---KQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRA 118


>gi|332307944|ref|YP_004435795.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
            4H-3-7+YE-5]
 gi|332175273|gb|AEE24527.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1172

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62
            +++VEDN +N ++  ++++          NG EA+          D+I+MD Q+  + G 
Sbjct: 1051 ILLVEDNFINQQVVIEMLKKLHCSVQVAENGQEAIHTLEDADKGFDLILMDCQMPIMDGY 1110

Query: 63   EITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            E +++I+ +   +    +P+IA+TA AMKGD E     G  AY+SKPI L+     ++K+
Sbjct: 1111 EASRKIRNNLHSNYASTLPIIALTANAMKGDREACLSAGMNAYLSKPIILAELKTELQKW 1170

Query: 120  I 120
            +
Sbjct: 1171 L 1171



 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59
            V++V+DN     +    + T        +N   AL+  R+      K DV ++D  L  I
Sbjct: 904  VLVVDDNPTLSAILGQWLTTQNIQVYHAQNASLALKRLREQQLSSAKIDVALIDTSLPGI 963

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115
            +G+E+TK I+ + +  ++ VI +T           +  G  +YI+KP+  +     
Sbjct: 964  NGIELTKAIRSNDQFAKLHVILMTPHDWLETGTASQLSGPVSYIAKPVKPASLGAA 1019


>gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 305

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D+   +    + +E SG+  L   +G  AL +A +  PD+I++D  +  + G + 
Sbjct: 11  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDIILLDAVMPGMDGFDT 70

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             ++K ++ + ++PV+ +T         R  + G   Y++KPI++      I+ ++  A
Sbjct: 71  CTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129


>gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +++IVED E+  +  +  +E  GY       G   LE A  +  D++++D+ L E+S
Sbjct: 1   MQNRILIVEDEEMIARALQIELEHEGYKVFVEHEGKSGLEAALHNSIDLVLLDVMLPELS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ ++I++ +    +PVI +TA     D+      G   YI+KP  +   +  ++  +
Sbjct: 61  GIEVLRRIRKKNAY--LPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSL 118

Query: 121 G 121
            
Sbjct: 119 R 119


>gi|114324568|gb|ABI63591.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL   ++E   +      NG+EA E  ++ + D ++MD+Q+  + G E 
Sbjct: 1121 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1180

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T +I+E   D+ +   PVIA+TA AM GD E+      + Y+SKP+  +  ++TI +
Sbjct: 1181 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1237


>gi|114324566|gb|ABI63590.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL   ++E   +      NG+EA E  ++ + D ++MD+Q+  + G E 
Sbjct: 1121 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1180

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T +I+E   D+ +   PVIA+TA AM GD E+      + Y+SKP+  +  ++TI +
Sbjct: 1181 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1237


>gi|73540279|ref|YP_294799.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72117692|gb|AAZ59955.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 243

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+     L R+ +   G+      +G        + +P +I++D+ + ++ GL  
Sbjct: 9   ILVVDDDPELRDLLREYLTQQGFAVSVLHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++  ++  +IPVI +TA + + D     + G + Y+ KP S    +  I   +  
Sbjct: 69  LRNLRAKND--DIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRR 124


>gi|330940506|gb|EGH43585.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 224

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +     +  SGYI      G++ L LA+    DV+I+D+ L E+ G E
Sbjct: 2   RILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++    +   ++ VTA     ++ +  + G + Y+ KP      +  ++  +  +
Sbjct: 62  VLSRLRKTVSTR---IMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRS 118


>gi|302392131|ref|YP_003827951.1| response regulator receiver protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204208|gb|ADL12886.1| response regulator receiver protein [Acetohalobium arabaticum DSM
           5501]
          Length = 119

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 72/119 (60%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VEDN+  + + R  ++ +GY      NG++A+E A + KPD+I++DI++ +++G
Sbjct: 1   MNKILVVEDNKNIITVLRICLQNAGYEVKTVSNGVKAVETAFEWKPDLILLDIKIPKMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + + +K++      P+I ++A A + + ++    G E YI+KPI     +  I KY+
Sbjct: 61  FLVCETLKDEEVTANTPIIMLSAKAEEENIKKAYNLGAEGYITKPIEPKRLLAEIDKYL 119


>gi|300087153|ref|YP_003757675.1| response regulator receiver protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526886|gb|ADJ25354.1| response regulator receiver protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 124

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M+KKV+IV+D E    L   +++   Y  L+  +G EAL++AR++ PD+IIMDI +  + 
Sbjct: 1   MVKKVLIVDDQEQIRLLVCGILKDE-YEVLEAGSGEEALQVAREYLPDLIIMDILMPGMD 59

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL    QIK +     IPV+ +T    + +       G + YI+KP +     + + +++
Sbjct: 60  GLTACSQIKSNPATNNIPVLVLTIIDYELNRRFAESLGADGYITKPFTPEELRKAVSEHL 119


>gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
 gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
          Length = 240

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 68/124 (54%), Gaps = 3/124 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59
           M  K+++V+D+   ++L    ++   Y  ++  +G +ALE  + +   D+II+DI +  +
Sbjct: 9   MPMKILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRL 68

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+ +  ++++++   ++P++ ++A +   D+ +    G + Y++KP +    +  +K  
Sbjct: 69  DGISVVHEVRKEN--AQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSL 126

Query: 120 IGEA 123
           +  +
Sbjct: 127 LRRS 130


>gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
 gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
          Length = 224

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I+ED E         ++  GY      +G + LE A +   D+I++D+ L  ++G
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLETALEINYDLILLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++     +  P+I +TA     D       G + Y+ KP ++   +  ++    
Sbjct: 61  LEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|209549644|ref|YP_002281561.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535400|gb|ACI55335.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 246

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++V+D+    +L    ++ +G       +G +       +  D+I++D+ +    GL 
Sbjct: 6   HILVVDDDREIRELVSGYLQKNGLRTSTAADGRQMRSFLEANAVDLIVLDVMMPGDDGLV 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++     + IP++ +TA   + D     + G + Y++KP +    +  IK  +  
Sbjct: 66  LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLAKPFAARELLARIKAVLRR 123


>gi|182418450|ref|ZP_02949744.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237666633|ref|ZP_04526618.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377832|gb|EDT75376.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237657832|gb|EEP55387.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 239

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 1   MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59
           M K ++++VED++    L    +ET  Y      +G +A+  A  +KPDVII+D+ L +I
Sbjct: 1   MNKAQILVVEDDKAIRNLITTTLETKDYKFHIAEDGAKAILEAISYKPDVIILDLGLPDI 60

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G+EI  +I+       +P+I V+A +   D+      G + Y++KP S+   +  ++  
Sbjct: 61  DGVEIISKIR---TWSNVPIIVVSARSDDSDKIEALDNGADDYLTKPFSVDELLARLRVA 117

Query: 120 IGE 122
           +  
Sbjct: 118 LRR 120


>gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED     +     +   GY      +G E L  A +   D+I++DI L  ++G  
Sbjct: 2   RLLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIMLPGMNGYR 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++   +  + P++ +TA   + DE      G + Y++KP S  +    +K  +  
Sbjct: 62  VCAALRAAGD--DTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRR 118


>gi|317475260|ref|ZP_07934526.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316908514|gb|EFV30202.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1487

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN       R +     Y  ++  +GME  + A +  PD+II D+ + E  G+ +T
Sbjct: 1219 LLVEDNAELRIFLRSIFSPE-YRIVEAADGMEGCDKALKLLPDIIISDVMMPEKDGIAMT 1277

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP++ +TA +    +    + G + YI+KP S +     +K  +
Sbjct: 1278 RELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLL 1332


>gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8]
 gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8]
          Length = 220

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED         D +  +GY      +G  A  +      DV+++D+ L  + GL 
Sbjct: 2   RILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGLPVMDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + KQ +     Q +PV+ +TA     ++      G + Y++KP  +   +  ++  +  +
Sbjct: 62  VLKQWRA--GGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRS 119


>gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 223

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VED E        ++   G+       G E L+   ++  D++++D+ L  + G E+ 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +Q++  S    +PVI VTA   + D+    + G + Y++KP S    +  I+  +  
Sbjct: 62  RQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 115


>gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
 gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
          Length = 231

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K ++IV+D     +     +E  GY  ++   G EAL L   H+PDVI++D+ L ++ G 
Sbjct: 6   KTILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHEPDVILLDLGLPDMDGE 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ + +          VI ++  A + D+      G   Y++KP SL+     I+  +  
Sbjct: 66  ELLRAL---PMWVRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVCLRR 122


>gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1302

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 65/116 (56%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++I ED  +N ++ R  ++  G  A    NG+E L+  R  + DVI+MD Q+  + G +
Sbjct: 1181 KILIAEDLPINQRVTRLQLKKIGLTADLAENGVEVLDAVRSKRYDVILMDCQMPVMDGYQ 1240

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             TK+++   E  +I ++A+TA AM+GD+ER    G   ++SKP      +   + +
Sbjct: 1241 ATKKLRAVPEHSDIHIVALTANAMEGDKERCFAAGMNDFVSKPTRPDTLLTAFENF 1296


>gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 635

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++ED+          +    Y      NG   LELA+    DVI++DI L ++ G+ 
Sbjct: 2   KILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        P++ +TA     D     + G + Y+ KP   +  +  I+     
Sbjct: 62  VCRRLRSQQN--HTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRR 118



 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 56/113 (49%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +M+++D+   +++ +  +   G+  +   N  +   +     PD++I+D+++   SGL 
Sbjct: 509 TLMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLN 568

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
           + + +++D     +P++ ++         ++   G + Y+ K I++   +E I
Sbjct: 569 LCQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELIECI 621


>gi|170690462|ref|ZP_02881629.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170144897|gb|EDT13058.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 1202

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + +++ ED+  N+     +IE  G      RNG EALE        D+I+MDI + E+ G
Sbjct: 1081 RTILLAEDDVRNIFALSHVIEPLGAKLQIARNGREALEALENGPEADLILMDIMMPEMDG 1140

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            L    +I+ +     +P+IA+TA AM  D  R  + G + Y+SKPI +   +   + ++ 
Sbjct: 1141 LTAMGEIRRNPRFAHLPIIALTAKAMANDRLRCLEAGADDYVSKPIDVDKLVALCRVWLR 1200

Query: 122  E 122
            +
Sbjct: 1201 Q 1201



 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 6   MIV--EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +IV  ED+    ++ RDL+    +  +   N    L L R  +P  +++D+ L + SGL 
Sbjct: 814 LIVAIEDDLAFAEILRDLVHELDFDFVHASNAASGLALVRDMRPAAVLLDVGLPDRSGLT 873

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           + + +K D   + IP+  V+A       ++    G   Y  KP + S     I++ 
Sbjct: 874 VLEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 926



 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 48/94 (51%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            K+V+++ED+    +  R L+++     +      EAL+   +   D ++ D+ L + +G 
Sbjct: 935  KRVLVIEDDAPMRESIRALLQSENTEIVAAATLSEALQYLEKSSFDCVVTDLALPDGTGY 994

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
            ++ +++  ++E   +PVI  T   +  +EE   +
Sbjct: 995  DLLERLAANAEHAALPVIVYTGRMLSDEEEHRLR 1028


>gi|195953641|ref|YP_002121931.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933253|gb|ACG57953.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 59/118 (50%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V +VED+    ++    +E  G+      NG E  +   Q  P++II+DI L    G+ I
Sbjct: 6   VYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLPGYDGVRI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            K ++++   ++IP+I +TA + + D+      G + YI+KP S    +  I+  +  
Sbjct: 66  AKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNR 123


>gi|153807242|ref|ZP_01959910.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185]
 gi|149130362|gb|EDM21572.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185]
          Length = 1318

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 3    KKV-----MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57
            K++     +IVEDNE   ++   + ET  Y      +G EALE+ ++  P +I+ D+ + 
Sbjct: 1045 KRIEGAKMLIVEDNESIKQMLAGIFETF-YQVSTASDGEEALEMIQKEMPSIILSDVVMP 1103

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             +SG E+ K+IK D     IPV+ +TA           K G + YI+KP + ++ +    
Sbjct: 1104 RMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCN 1163

Query: 118  KYI 120
              +
Sbjct: 1164 NLV 1166


>gi|71737192|ref|YP_276924.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|289646922|ref|ZP_06478265.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|71557745|gb|AAZ36956.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320326322|gb|EFW82375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320331685|gb|EFW87623.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330872407|gb|EGH06556.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330891387|gb|EGH24048.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989497|gb|EGH87600.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 224

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED     +     +  SGYI      G++ L LA+    DV+I+D+ L E+ G E
Sbjct: 2   RILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  ++++    +   V+ VTA     ++ +  + G + Y+ KP      +  ++  +  +
Sbjct: 62  VLSRLRKTVSTR---VMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRS 118


>gi|332977318|gb|EGK14106.1| transcriptional regulatory protein CpxR [Psychrobacter sp.
           1501(2011)]
          Length = 223

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++ +D+     L  + +   G       +G + L+  + +  D+I++DI + ++ G
Sbjct: 1   MTHILLGDDDTELSDLLVEYLTNHGIKCDCAYDGEQVLQKLKTNSYDLIVLDIMMPKVDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L + +Q+     L + PVI +TA   + D     + G + YI+KP +    +  I   I 
Sbjct: 61  LSVLRQL---PTLTQTPVIMLTAKGDEIDRIIGLELGADDYIAKPCNPRELLARINAVIK 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|325103582|ref|YP_004273236.1| integral membrane sensor hybrid histidine kinase [Pedobacter saltans
            DSM 12145]
 gi|324972430|gb|ADY51414.1| integral membrane sensor hybrid histidine kinase [Pedobacter saltans
            DSM 12145]
          Length = 1328

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++++EDN+       D +    Y  L   NG E L+L   H PD++I D+ +  + G+  
Sbjct: 1080 ILVIEDNKEVRDFVVDTL-KEKYSVLTAENGSEGLKLTLTHMPDIVISDVMMPVMDGIAY 1138

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             + +K D  +  IPV+ +TA   + DE    K G +AY++KP ++     T+   +
Sbjct: 1139 CRAVKSDERINHIPVVLLTARTGESDELEGLKIGADAYMTKPFTIDKLKYTVSNLV 1194


>gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI]
 gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN   ++    ++    +      NG + L LA Q+  D I++D+ L E+ G E
Sbjct: 2   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMLPEMDGFE 60

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I+   E  E PV+ +TA     D  +    G + YI KP         I+  +  +
Sbjct: 61  VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118


>gi|299069565|emb|CBJ40837.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           CMR15]
          Length = 233

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L  D +  + Y      +G  A++  R+  P+++++D+ L    GLEI
Sbjct: 16  ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++      ++P++ VTA   + D     + G + YI KP S    +  IK  +  
Sbjct: 76  CREVRA---FSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRR 130


>gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 236

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED++   +L R  +   GY   +  +G   L    +     +++D+ L  + GL
Sbjct: 5   KRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGL 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           EI +  +  +    +P+I  +A + +       + G + Y++KP S+   +  ++  +  
Sbjct: 65  EICR--RARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRR 122

Query: 123 A 123
           +
Sbjct: 123 S 123


>gi|228919830|ref|ZP_04083188.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839846|gb|EEM85129.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 896

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E L++ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGIECLDILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|228901257|ref|ZP_04065454.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228921393|ref|ZP_04084716.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228939836|ref|ZP_04102413.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228965658|ref|ZP_04126739.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228972725|ref|ZP_04133324.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979309|ref|ZP_04139646.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|229045415|ref|ZP_04192076.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229110168|ref|ZP_04239744.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229150932|ref|ZP_04279143.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229190816|ref|ZP_04317809.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228592686|gb|EEK50512.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228632492|gb|EEK89110.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228673360|gb|EEL28628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228724953|gb|EEL76249.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228780417|gb|EEM28647.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228786940|gb|EEM34920.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228794066|gb|EEM41588.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228819767|gb|EEM65815.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228838166|gb|EEM83484.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228858375|gb|EEN02838.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED++   +L +  + T  Y  +   +G+E +    +   D+I++D+ +  ++G E++K 
Sbjct: 2   VEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSKM 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I+  S    +P+I +TA   + D+ +    G + YI+KP S  + +  ++  +  +
Sbjct: 62  IRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 114


>gi|239616845|ref|YP_002940167.1| response regulator receiver modulated serine phosphatase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505676|gb|ACR79163.1| response regulator receiver modulated serine phosphatase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 381

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 67/120 (55%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+V++++D+     L + +++ +GY  ++  NG  +L+ A   KPD+I++D+ L +I+G
Sbjct: 1   MKRVLVIDDDRTVRMLLKVILKKAGYDVVECANGKTSLKKAESFKPDLILLDLMLPDING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L++ +       L+++P+I +T    + ++    + G   +I+KP      +  ++  + 
Sbjct: 61  LQLLETFTSKENLKDVPIIVLTGSTDEENKLTALRSGAVDFITKPFLSEEVLLRVRTQLR 120


>gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 810

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 71/119 (59%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VEDN++N  +   L++  G+IA    +G +AL+   + K D+I MD+Q+  I+G E
Sbjct: 685 TVLLVEDNQVNRLVATQLLKKLGFIADSAESGFDALDSCLEKKYDIIFMDLQMPGINGFE 744

Query: 64  ITKQIKE-DSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             ++I+  +      P +IA+TA +M+GD E+  + G + YI+KPI      E++ + +
Sbjct: 745 TVERIRARNPNTAPQPWIIALTADSMQGDREKCLEAGMDDYIAKPIRPENLQESLDRAL 803



 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
           K++++++D         D++   G  A +        +L +Q    D  I+D  L+   G
Sbjct: 542 KRILLIQDEGAAYDALTDMLLAIGLQATRASQSEHIFQLLQQEPEFDCAIIDKTLKTEDG 601

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKG--DEERIRKGGCEAY-ISKPISLSIFMETIKK 118
             + ++IK +     IP I +           E        +Y I+KP S +     + K
Sbjct: 602 ARLARRIKLEFTRYRIPFIGLCPIGEPEGGSREDRL----FSYRITKPFSPAGLKLALHK 657

Query: 119 YI 120
            I
Sbjct: 658 AI 659


>gi|197124634|ref|YP_002136585.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196174483|gb|ACG75456.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 1843

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            + V++ +D+  N+     ++ET+    +  +NG EALE+       D+++MD  + E+ G
Sbjct: 1709 RTVLLADDDMRNLFAIHSVLETAHVKVIHAQNGREALEVLEASPQVDLVLMDTMMPEMDG 1768

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            L   + I+  +  + +P++++TA AMKGD +     G   Y++KP+     +  I +++ 
Sbjct: 1769 LTAIRAIRAQARYRALPIVSLTAKAMKGDRDDALAAGATDYVAKPVDPQRLLSVIGRWLA 1828

Query: 122  E 122
            E
Sbjct: 1829 E 1829


>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1410

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 6/121 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ ED+ +N K+   +++  GY A    NG+E LE  R+   DVI+MD+Q+ E+ GLE
Sbjct: 1128 RILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEALRRQTYDVILMDMQMPEMDGLE 1187

Query: 64   ITKQI------KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
              +QI      +E    +   +IAVTA AM+ D       G + YISKPI +   +  +K
Sbjct: 1188 AARQIKKLYGDREQDMSERPRIIAVTANAMESDRNDCIAAGMDDYISKPIRMEQLVSVLK 1247

Query: 118  K 118
            +
Sbjct: 1248 Q 1248



 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61
            K+++IV++N  N ++     +  G +A    NG+EAL + RQ +P D+ ++++Q+ +  G
Sbjct: 980  KRLLIVDNNATNRQVLTLQTQAWGMLAKTAANGVEALNILRQGEPFDMALLEMQMPDFDG 1039

Query: 62   LEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            L + K+I++ S  + +P++ +T+      D  ++      A ++KPI  S     +   +
Sbjct: 1040 LSLAKEIRKLSPYKRVPLVLLTSMGRQSIDRAQLYD--FSACLNKPIKQSQLYNVLMNIL 1097

Query: 121  G 121
            G
Sbjct: 1098 G 1098


>gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator
           [Bordetella avium 197N]
 gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator
           [Bordetella avium 197N]
          Length = 223

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED           +  SGY     R+G  A         D++++D+ L  + G E
Sbjct: 2   RILIVEDEPKTADYLAGGLAESGYAVTVARDGRSAQHCFESALFDLVLLDVMLPGMDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I+        PV+ ++A     D  +  + G + Y+ KP S +  +  ++  +  
Sbjct: 62  VLRVIRRR---ASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRR 117


>gi|51832271|gb|AAU10319.1| two-component histidine kinase [Alternaria brassicicola]
          Length = 1328

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL   ++E   +      NG+EA E  ++ + D ++MD+Q+  + G E 
Sbjct: 1120 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1179

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T +I+E   D+ +   PVIA+TA AM GD E+      + Y+SKP+  +  ++TI +
Sbjct: 1180 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1236


>gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1296

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+DN        +L++   Y  +   +G+EAL    +  PD+++ D+ +  + G  +
Sbjct: 657 VLVVDDNADMRAYIANLLKAH-YEVVLAGDGVEALAAVERRMPDLVLTDVMMPRLDGFGL 715

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              ++ D   + +PVI ++A A +       + G + Y+SKP +    +  +K  +
Sbjct: 716 LAALRTDERTRALPVIVLSARAGEEATLAGLERGADDYLSKPFAARELLGRVKANL 771


>gi|320322881|gb|EFW78972.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 705

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++I++D+     L   L++  GY  L   +G   L +     PD+I++DI +  + G 
Sbjct: 6   ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           E+  Q+K       IP+I ++A   +       + G E Y++KP+  +     ++  + 
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGTEEYLNKPVDSAELWLRVRNLLR 124


>gi|310643413|ref|YP_003948171.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309248363|gb|ADO57930.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 236

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+   ++L  + ++   Y      +G   +E  R ++PD +++DI +  I G
Sbjct: 1   MTKIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIMMPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           L +  Q++E     E+P+I ++A   + D     + GC  +++KP +    +  +K  + 
Sbjct: 61  LSLLTQLRE---FTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLR 117


>gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 237

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+ VED+++  +  +  +E  G+      +G++ LE  R   PD+ ++D+ +  + G+
Sbjct: 11  ARVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVAAPDIALLDVMVPGMDGV 70

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+++S    +PVI ++A A   D     + G + Y++KP  +S+ +  ++  +  
Sbjct: 71  SLCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127


>gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response
           transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 227

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED        +  +  +G++    R+G + +  A     D++I+D+ L  I G  
Sbjct: 2   KILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVMLPGIDGWS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + I++    +++PV+ +TA     D  R  + G + Y+ KP + S  +  ++  +  
Sbjct: 62  VLRGIRKSG--KDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRR 118


>gi|254292390|ref|YP_003058413.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254040921|gb|ACT57716.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 228

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           K ++IV+D+    +   +  E   G+  +Q  N  E + LA   KPD++I+D+++ ++ G
Sbjct: 5   KTILIVDDDNDLREALAEQFERHEGFSIIQAHNATEGMNLAEAEKPDLVILDVEMPDMDG 64

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +  K +++      +PVI +T      D       G   Y++KP   ++ +  ++ ++ 
Sbjct: 65  RDACKLMRKHGL--RVPVIMLTGQDSDSDMVLGLDSGANDYVAKPFKFTVLLARVRAHLR 122


>gi|255657538|ref|ZP_05402947.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452790|ref|ZP_06894477.1| response regulator [Clostridium difficile NAP08]
 gi|296879958|ref|ZP_06903930.1| response regulator [Clostridium difficile NAP07]
 gi|296258338|gb|EFH05246.1| response regulator [Clostridium difficile NAP08]
 gi|296429072|gb|EFH14947.1| response regulator [Clostridium difficile NAP07]
          Length = 228

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K++ +VED++   K    L+ + G+I        EAL    ++K D+ ++DI L + +G
Sbjct: 1   MKRIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISLPDGNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I  +IKE+   Q+IPVI +TA   +         G + YI+KP      +  I+  + 
Sbjct: 61  FTICTEIKEN---QDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALR 117

Query: 122 EA 123
           ++
Sbjct: 118 KS 119


>gi|239620735|ref|ZP_04663766.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132346|ref|YP_003999685.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481680|ref|ZP_07940714.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689647|ref|YP_004209381.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691608|ref|YP_004221178.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239516311|gb|EEQ56178.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773960|gb|ADQ03448.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916912|gb|EFV38300.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456464|dbj|BAJ67086.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460983|dbj|BAJ71603.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + IV+D++   ++   ++E  G+  +   +G+ A+E+    KPD+I++D+ L  + G
Sbjct: 1   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             + ++I+       +P+I +TA +   D     + G + Y+ KP  ++  +  I  
Sbjct: 61  TGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHA 114


>gi|221105902|ref|XP_002159225.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + RD +  + +     +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 4   KKILLVEDDPNFGSVLRDYLSLNDFEVTLAKNGMEGFEKFKKDTYDLCILDVMMPYKDGY 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+E +   E+P+I +TA  +K D  +  K G + Y++KP    + +  IK  I  
Sbjct: 64  TLAREIREKN--AEVPIIFLTAKTLKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQR 121


>gi|218281490|ref|ZP_03487933.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989]
 gi|218217412|gb|EEC90950.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989]
          Length = 717

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 72/118 (61%), Gaps = 3/118 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++ EDN+LN ++   L+   G I     +G+  ++  +++K D+I+MDIQ+  + G 
Sbjct: 543 KHILLAEDNDLNAEIAMTLLSDYGLIVDHVNDGIACVKKVKENKYDLILMDIQMPNMDGY 602

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + T++I+E   L +IP++A+TA A + D+++    G   +I+KPI +   + T+ + +
Sbjct: 603 QATQKIRE---LSDIPIVAMTANAFEEDKQKALSIGMNGHIAKPIDMDKVILTLSRVL 657


>gi|210631674|ref|ZP_03296965.1| hypothetical protein COLSTE_00850 [Collinsella stercoris DSM 13279]
 gi|210159962|gb|EEA90933.1| hypothetical protein COLSTE_00850 [Collinsella stercoris DSM 13279]
          Length = 191

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            +++VED+     L    +   GY   +   G  A+  A    PD+I++D+ L +I G+E
Sbjct: 8   HILVVEDDPAVRNLVTTALGLHGYDVEKAETGELAIMEAASRNPDLIMLDLGLPDIDGVE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +I+       +P+I ++A     D+      G + Y++KP S+   +  ++  +  +
Sbjct: 68  VIAKIRS---WSAVPIIVISARIEDSDKIGALDAGADDYLTKPFSVEELLARVRASLRRS 124


>gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 225

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++++D    +++ +  +E  GY  +Q  +G+EAL+   +  PD++I+D+ L +IS
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + ++I+++SE   +P+I +TA + +         G + YI+KP S    +  +   +
Sbjct: 61  GENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAVL 117

Query: 121 GE 122
             
Sbjct: 118 KR 119


>gi|154505423|ref|ZP_02042161.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
 gi|153794266|gb|EDN76686.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++VED++   +  +  +++ GY      +G+E LE+  +    + I+DI +  + G
Sbjct: 3   MNHILVVEDDKEIREGVKIYLQSQGYEVFLAADGIEGLEVMEKEDIHLAIVDIMMPRMDG 62

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + +T +++E  +    PVI ++A + + D+      G + Y++KP +    M  +   + 
Sbjct: 63  IRMTMKLREKYDF---PVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLR 119

Query: 122 E 122
            
Sbjct: 120 R 120


>gi|256830618|ref|YP_003159346.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579794|gb|ACU90930.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 348

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D E+N+ +  + +    Y  +   +G  ALE+A    PD+I++D+ +  + G E
Sbjct: 8   KILVVDDAEVNIDILVEFLGGE-YDVVTAASGQRALEIAVTAPPDIILLDVVMPGMDGFE 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IG 121
             +++K D    +IP+I +TA      E      G   +I+KP +  +    +  +  + 
Sbjct: 67  ACRRLKSDERTADIPIIFITALDDVAAETTGLALGAIDFITKPFNPGVVRARVANHLALR 126

Query: 122 EA 123
           EA
Sbjct: 127 EA 128


>gi|227546759|ref|ZP_03976808.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212721|gb|EEI80602.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 240

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + IV+D++   ++   ++E  G+  +   +G+ A+E+    KPD+I++D+ L  + G
Sbjct: 1   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             + ++I+       +P+I +TA +   D     + G + Y+ KP  ++  +  I  
Sbjct: 61  TGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHA 114


>gi|218129290|ref|ZP_03458094.1| hypothetical protein BACEGG_00867 [Bacteroides eggerthii DSM 20697]
 gi|217988467|gb|EEC54788.1| hypothetical protein BACEGG_00867 [Bacteroides eggerthii DSM 20697]
          Length = 1487

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDN       R +     Y  ++  +GME  + A +  PD+II D+ + E  G+ +T
Sbjct: 1219 LLVEDNAELRIFLRSIFSPE-YRIVEAADGMEGCDKALKLLPDIIISDVMMPEKDGIAMT 1277

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++ D     IP++ +TA +    +    + G + YI+KP S +     +K  +
Sbjct: 1278 RELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLL 1332


>gi|220908589|ref|YP_002483900.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865200|gb|ACL45539.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 781

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 66/118 (55%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + +++V+D+  N  +   L+ET  +I L+  +G EAL+     KPD+II DI + ++ G 
Sbjct: 578 RTILVVDDHAENRAILVHLLETLKFILLEASDGEEALQTLEALKPDLIISDIVMPKLDGW 637

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+T+ +++    + +PVI  +A  ++       + G   +++KPI     +  +++++
Sbjct: 638 EMTRHLRQHPVGENLPVIIASASVLESFRRNSLEAGANDFLTKPIKTGELLSILQQHL 695


>gi|218440881|ref|YP_002379210.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
 gi|218173609|gb|ACK72342.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
          Length = 125

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 70/119 (58%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V+IV+D+    ++  +L+E  G   L+  +GMEA E+ ++  PD++I D+ + +++G
Sbjct: 1   MITVLIVDDSASLRQILLELLEKRGINVLEAASGMEAQEVIQKQIPDLVITDLIMPQMNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ + IK +   Q++PV+  +  + + D     K G +AYI+KP   +  ++TIK  +
Sbjct: 61  YELCRWIKNNPNTQDVPVLICSTKSEEFDRYWGMKQGADAYITKPFDNAEMLQTIKFLL 119


>gi|119492095|ref|ZP_01623548.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453305|gb|EAW34470.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I ED           +  +G+I     +G EAL   R  + +++I+D+ L  I G
Sbjct: 1   MKRILIAEDEPHIAAFLDKKLRDNGFITTIAEDGYEALNQVRHEQYNLLILDLGLPGIEG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ ++++   E  EIP+I +TA    GD+    +GG   Y++KP S    +  I+  + 
Sbjct: 61  TEVLEELRGQGE--EIPIIILTARDEVGDKVSGLEGGANDYVTKPFSFEELLARIRLQLR 118

Query: 122 E 122
           +
Sbjct: 119 Q 119


>gi|59713543|ref|YP_206318.1| sensor histidine kinase [Vibrio fischeri ES114]
 gi|59481791|gb|AAW87430.1| sensor histidine kinase, GacS/BarA family [Vibrio fischeri ES114]
          Length = 864

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEIS 60
           K V++VEDN +N K+   L++ +G+      NG EAL++   +     +++MD  +  + 
Sbjct: 742 KTVLVVEDNAINQKVASLLLKKAGFCVEIANNGQEALDMVMSKTSPYSLVLMDCMMPIMD 801

Query: 61  GLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
           G   T+ I+   E+ E + +P+IA+TA     D ++  + G + Y++KP    + +E ++
Sbjct: 802 GFAATEAIRKWEENQEQKRLPIIALTASVFIEDIDKCYQSGMDDYVAKPFRKELILEKLE 861

Query: 118 KY 119
            Y
Sbjct: 862 AY 863


>gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 260

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|301307857|ref|ZP_07213813.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 20_3]
 gi|300834200|gb|EFK64814.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 20_3]
          Length = 1346

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++++D++  + L  + + +  Y   +  N  +ALE  +Q+ P +II DI +  + GLE+
Sbjct: 1097 ILVIDDHKDIVWLITETLSSE-YQVQEAYNAEKALEFLKQYTPSLIITDIMMPNMDGLEL 1155

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               IKE+   + IP+I ++A     ++      G +AY++KP S ++ +  + + +
Sbjct: 1156 ISLIKENKYTRHIPLIIISAKISDQEQAAGLNIGADAYLTKPFSPTVLLSVVNRLM 1211


>gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
          Length = 260

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|292670361|ref|ZP_06603787.1| response regulator [Selenomonas noxia ATCC 43541]
 gi|292647953|gb|EFF65925.1| response regulator [Selenomonas noxia ATCC 43541]
          Length = 235

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK+++VED+    +L RD +E SG+    + +G E    A   +  +I++D+ L    G
Sbjct: 1   MKKILLVEDDNDIAQLERDYLEASGFAVDISSDGDEGQRRALTGEYSLILLDVMLPGADG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             I + ++ +    +IP++ V+A     D+ R    G + YI KP S S     +K +I 
Sbjct: 61  FAICRAVRREL---DIPILMVSARLEDVDKIRALGLGADDYIVKPFSPSELAARVKAHIT 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|260428849|ref|ZP_05782826.1| response regulator receiver modulated serine phosphatase
           [Citreicella sp. SE45]
 gi|260419472|gb|EEX12725.1| response regulator receiver modulated serine phosphatase
           [Citreicella sp. SE45]
          Length = 415

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 58/116 (50%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++V+D+ + +K+   ++   G+  L+  +G +ALE+ R   PD ++ D  +  + GL
Sbjct: 19  QRVLVVDDSPVQLKILCAVMRRWGFKVLEASSGEQALEICRTMVPDAVLSDWMMPGMDGL 78

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           E  +Q +E         I +T+   K +  R    G + +++KP++       I  
Sbjct: 79  EFCRQFRELKRDSYGYFILLTSKGEKEEIARGLDAGADDFLTKPVNSYELRARINA 134


>gi|256838766|ref|ZP_05544276.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
 gi|256739685|gb|EEU53009.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
          Length = 1314

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++++D++  + L  + + +  Y   +  N  +ALE  +Q+ P +II DI +  + GLE+
Sbjct: 1065 ILVIDDHKDIVWLITETLSSE-YQVQEAYNAEKALEFLKQYTPSLIITDIMMPNMDGLEL 1123

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
               IKE+   + IP+I ++A     ++      G +AY++KP S ++ +  + + +
Sbjct: 1124 ISLIKENKYTRHIPLIIISAKISDQEQAAGLNIGADAYLTKPFSPTVLLSVVNRLM 1179


>gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1]
          Length = 260

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|196230354|ref|ZP_03129216.1| response regulator receiver modulated serine phosphatase
           [Chthoniobacter flavus Ellin428]
 gi|196225284|gb|EDY19792.1| response regulator receiver modulated serine phosphatase
           [Chthoniobacter flavus Ellin428]
          Length = 396

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++ +D  ++ +L  + ++ SG+   Q  +G E L LA    PD++++D ++ ++ G +
Sbjct: 19  RVLLADDEAVSRRLLSESLQRSGFEVRQAADGEETLRLATDELPDLLVLDFEMPQLDGAQ 78

Query: 64  ITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +   ++     +L+ +PVI +TA A + +E    + G   +++KP+S  +    I   + 
Sbjct: 79  VCHLLRASDREDLRNLPVIMLTAHAGEVEEIGCLQAGANDFVTKPVSRDVLAARIHTQLR 138


>gi|194440153|ref|ZP_03072201.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|256022375|ref|ZP_05436240.1| transcriptional regulatory protein YedW [Escherichia sp. 4_1_40B]
 gi|293415278|ref|ZP_06657921.1| two-component system [Escherichia coli B185]
 gi|194420916|gb|EDX36955.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|291432926|gb|EFF05905.1| two-component system [Escherichia coli B185]
 gi|324018823|gb|EGB88042.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
          Length = 260

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
 gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
          Length = 1682

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59
             ++++VEDN+LN ++   L+  +G++     NG  AL+L +   P   D+++MD+Q+  +
Sbjct: 1328 ARILLVEDNDLNQEVAVGLLAGAGFVVEVAENGAVALDLLQAGGPGCYDLVLMDMQMPVM 1387

Query: 60   SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
             G+  T +I+       +P++A+TA AM  D E+    G + +++KPI        ++ +
Sbjct: 1388 DGVTATGEIRRLPGFDTLPIVAMTANAMASDREKCLAAGMDDHLAKPIDPPALWAALRHW 1447

Query: 120  I 120
            I
Sbjct: 1448 I 1448



 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 64/126 (50%), Gaps = 5/126 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57
            +KV++V+DN+L  ++  DL+ +  +      +G+EAL+  ++        +V+ +D Q+ 
Sbjct: 1180 RKVLVVDDNDLAREVIGDLLRSMSFAVSTASSGLEALDEIQRANAAGMPYEVVFLDWQMP 1239

Query: 58   EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             I G+E  ++IK         ++ VTA+      +     G    + KP++ S+  +T+ 
Sbjct: 1240 GIDGVETARRIKRALAASSPRLLMVTAYGRDEVMKSAADAGIHDLLIKPVTASLLFDTLM 1299

Query: 118  KYIGEA 123
            + +G A
Sbjct: 1300 RALGRA 1305


>gi|51832259|gb|AAU10313.1| two-component histidine kinase [Alternaria brassicicola]
          Length = 1328

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL   ++E   +      NG+EA E  ++ + D ++MD+Q+  + G E 
Sbjct: 1120 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1179

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T +I+E   D+ +   PVIA+TA AM GD E+      + Y+SKP+  +  ++TI +
Sbjct: 1180 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1236


>gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51]
 gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 896

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 70/120 (58%), Gaps = 1/120 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             ++++ ED+ +N  +  ++++  G+      +G EAL L  Q+  DVI+MDIQL  + G
Sbjct: 652 SYRILLAEDHIVNSIVITEMLKIQGHRVDIAMDGEEALALYHQNPYDVILMDIQLPRLDG 711

Query: 62  LEITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +E+TK+I+         P+IA+TA+A++GD E   + G + YI KP+ +   +  + + +
Sbjct: 712 IEVTKRIRASEGAQSHTPIIALTAYALQGDREGFLQAGMDEYIPKPVMMEELIMVLDRVV 771


>gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 219

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+E         +   GY     ++G+ A +  +    D++I+D+ L  + G  
Sbjct: 2   RILVVEDDESLGSGLCTALGQDGYTVDWLKDGLHASQALQSEHFDLVILDVGLPRMDGFS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + K ++      EIPV+ +TA     D       G + Y+ KP  +      ++  I  A
Sbjct: 62  VLKNMRLLK--SEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIRRA 119


>gi|312130452|ref|YP_003997792.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906998|gb|ADQ17439.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 222

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K+++V+D+E  ++L    +E   Y      NG++A+E+A++ +PD+I+MDI +  + 
Sbjct: 1   MNGKILVVDDDEDILELLIYNLEKEQYQVRSAENGLKAIEVAKEFQPDIILMDIMMPLLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E  K IK +     +  I +TA A +  E    + G + YI+KPI     +  I+ Y 
Sbjct: 61  GIEAGKIIKTEQPQTHL--IYLTARAEEYSEVAAFEVGADDYITKPIKPRALLSRIQAYF 118

Query: 121 GE 122
            +
Sbjct: 119 RK 120


>gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 226

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVED     +  R  +  +G++    R+G++ L LA     D++I+D+ L  + G  
Sbjct: 2   KILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDYDLLILDVMLPRMDGWA 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++     +E+PV+ +TA     D  R  + G + Y+ KP + S  +  ++  +  
Sbjct: 62  LLQAVR--LSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRR 118


>gi|148976493|ref|ZP_01813189.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
 gi|145964069|gb|EDK29326.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
          Length = 239

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +    +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNANN--SLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|119505209|ref|ZP_01627284.1| response regulator receiver domain [marine gamma proteobacterium
           HTCC2080]
 gi|119458900|gb|EAW40000.1| response regulator receiver domain [marine gamma proteobacterium
           HTCC2080]
          Length = 126

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 71/120 (59%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + +++VEDNE+N ++ +  ++  GY      +G EAL+  R  KP ++++DI L    
Sbjct: 5   MSRHLLLVEDNEVNREMLQRRLQRVGYTLDCAADGQEALDKMRDVKPALVLLDINLPIKD 64

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  + K+ + DS++Q+IP+IA+TA AM+ D ++    GC  Y +KPI     +  I+  +
Sbjct: 65  GWTVVKEARSDSDIQDIPIIALTAHAMESDRQQALASGCRDYATKPIDFPELVIKIENLL 124


>gi|114324564|gb|ABI63589.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|114324574|gb|ABI63594.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|114324576|gb|ABI63595.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL   ++E   +      NG+EA E  ++ + D ++MD+Q+  + G E 
Sbjct: 1121 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1180

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T +I+E   D+ +   PVIA+TA AM GD E+      + Y+SKP+  +  ++TI +
Sbjct: 1181 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1237


>gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
 gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
          Length = 1126

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 61/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    ++  GY      +G E L++  + KP+++++D+ +  +SG E+ 
Sbjct: 722 LVADDEPVNLQVLTSFLKLEGYRVKVANDGPETLKVFEEEKPELLLLDVMMPGMSGYEVC 781

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++E     E+P+I +TA     D  R  + G   Y+SKP +       IK ++
Sbjct: 782 QSLRETYSHSELPIIMLTALNQTQDRIRGFESGANDYLSKPFNKQELAARIKAHL 836


>gi|312885917|ref|ZP_07745549.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311301724|gb|EFQ78761.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1437

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL + ++   GY      NG E LE       DVI+MD+Q+ E+ GLE 
Sbjct: 1315 ILVAEDNLINQKLIQRILNKMGYTIEIVANGYEVLEQMMLKTYDVILMDVQMPEMDGLET 1374

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK-KYI 120
            T+ I++  + ++  +IA+TA AM  D+E     G + YI+KP+ L   +  +K  ++
Sbjct: 1375 TQLIRK-GKFKQPFIIAMTANAMLEDKEICISAGMDDYIAKPMKLDELVALLKHAWL 1430



 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61
            KK+++V+DN+ N+ + +  ++    I +   +  EAL  LA  +  +++I D+++ ++ G
Sbjct: 1172 KKILVVDDNQTNLTILKTQLQQWKLIPVTASSAKEALAILAADNSFNLVITDMEMPDMDG 1231

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKYI 120
            + + K IK       +PVI +++   +  ++         + + KP   S   ++I+  +
Sbjct: 1232 VGLAKAIKH--VHSNLPVIMLSSIGDESSKKNPGL---FASILVKPAKQSQLSKSIRAEL 1286

Query: 121  G 121
            G
Sbjct: 1287 G 1287


>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
 gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
          Length = 1513

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 70/119 (58%), Gaps = 3/119 (2%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++VEDNE+N ++   ++   G  A    +G+ AL    +   D+++MD+Q+  + G+E T
Sbjct: 1252 LLVEDNEVNRQVALGMLRRLGLRADVAEDGLGALRALEEGDYDLVLMDVQMPGMDGVETT 1311

Query: 66   KQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            + I+     +    +P++A+TA AM+GD ER  + G + ++SKP+  S   E++  ++G
Sbjct: 1312 RAIRAPGSRARNPRVPIVAMTAHAMQGDRERCLEAGMDGFLSKPLDFSTLAESLSPWLG 1370



 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58
            + ++V+DN  N ++    +   G       +G  ALE+ R         ++ ++D+Q+  
Sbjct: 1108 RALVVDDNATNREILLARLTGWGMAVEAVADGPSALEVLRAASARGVPFEMAVLDMQMPG 1167

Query: 59   ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            + G  + + ++ED +L  + ++ +T+   +GD  R+ + G  AY++KP+      +++  
Sbjct: 1168 MDGETLGRILREDPKLGGLKLVMMTSMGQRGDAHRMEEIGFSAYLTKPLRHQDLRDSLTA 1227

Query: 119  YI 120
             +
Sbjct: 1228 VL 1229


>gi|306819943|ref|ZP_07453594.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551979|gb|EFM39919.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 224

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED          ++  S Y      +G +AL        D +I+DI + +I G+E
Sbjct: 2   RILLVEDERELSNALVAILTRSNYSVDPVYDGEDALYYLETENYDAVILDIMIPKIDGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K I+++    +IPVI +TA +   D       G + Y++KP +    +  ++     
Sbjct: 62  VLKTIRKEGN--KIPVIMLTAKSEIDDRVVGLDSGADDYLTKPFASKELLARLRALTRR 118


>gi|220919853|ref|YP_002495156.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219952273|gb|ACL62664.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 231

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++++I++D+     +  + +   GY         E  +  R+ + D +I+D+ L +  
Sbjct: 1   MAERLLIIDDDRRLAAMVSEYLSAEGYAVASRFTAREGHDALRRERFDAVILDVMLPDCD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+ +QI+  S    +P++ +TA     D     + G + Y+ KP +    +  I+  +
Sbjct: 61  GFELCRQIRTHSG---VPILMLTAKGDDTDRIIGLEIGADDYLPKPFNPRELLARIRALL 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
 gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
          Length = 1126

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 61/115 (53%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++ +D  +N+++    ++  GY      +G E L++  + KP+++++D+ +  +SG E+ 
Sbjct: 722 LVADDEPVNLQVLTSFLKLEGYRVKVANDGPETLKVFEEEKPELLLLDVMMPGMSGYEVC 781

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++E     ++P+I +TA     D  R  + G   Y+SKP +       IK ++
Sbjct: 782 QSLRETYSHSQLPIIMLTALNQTQDRIRGFESGANDYLSKPFNKQELAARIKAHL 836


>gi|190574154|ref|YP_001971999.1| putative two-component regulatory system family, response regulator
           protein [Stenotrophomonas maltophilia K279a]
 gi|190012076|emb|CAQ45698.1| putative two-component regulatory system family, response regulator
           protein [Stenotrophomonas maltophilia K279a]
          Length = 260

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED      +    +E  G   L+  +G  AL+L R  +PD++++D+QL  + G  +
Sbjct: 33  VLIVEDEAEIADILTAYLEREGLRTLRAADGHSALDLHRSARPDLVLLDVQLPRLDGWSV 92

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             Q+++  E    PVI +TA     D+    + G + Y+ KP + +     ++  +  
Sbjct: 93  LTQLRQRGET---PVIMLTALDQDLDKLTALRMGADDYVVKPFNPAEVAARVRAVLRR 147


>gi|163756770|ref|ZP_02163880.1| transcriptional regulator [Kordia algicida OT-1]
 gi|161323287|gb|EDP94626.1| transcriptional regulator [Kordia algicida OT-1]
          Length = 348

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KKV+++ED+ +  +   +L+E + Y  +   NG   +E A Q  PD+I+ DI +  + G
Sbjct: 1   MKKVLLIEDDTILRENTAELLELADYDVVTAPNGKVGVETALQDSPDIIVCDIMMPALDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + + + ++   + IP I ++A   + D  +    G + YI+KP      +  I+  I 
Sbjct: 61  YGVLEALSKNDATKYIPFIFLSAKTERQDIRKGMDLGADDYITKPFEEEELISAIESRIA 120

Query: 122 EA 123
           +A
Sbjct: 121 KA 122


>gi|254255388|ref|ZP_04948704.1| hypothetical protein BDAG_04727 [Burkholderia dolosa AUO158]
 gi|124901125|gb|EAY71875.1| hypothetical protein BDAG_04727 [Burkholderia dolosa AUO158]
          Length = 320

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 58/121 (47%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++IV+D    ++L  D++ ++G       +G +A + A+   PD+I+MD+++  + G 
Sbjct: 63  AHILIVDDQPEQLRLLIDILRSTGCRISIAFDGSQAYQRAQAIAPDLILMDVRMPRMDGF 122

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              + +  D   + IPVI +T  +   +     + G   YI+KP      +  I+  +  
Sbjct: 123 TACRLLAADPLTRAIPVIFLTVASEWHERLEGLETGGVDYIAKPFDPDDVLARIRVQLAR 182

Query: 123 A 123
           A
Sbjct: 183 A 183


>gi|21229958|ref|NP_635875.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766834|ref|YP_241596.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188989907|ref|YP_001901917.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21111470|gb|AAM39799.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572166|gb|AAY47576.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167731667|emb|CAP49845.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris]
          Length = 767

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN +N+ + + L+   G+ A    +G  AL      + D++ MD Q+  + G  
Sbjct: 498 RILLVEDNPVNLLVAQKLLGVLGFEADTATDGEAALSSMESTRYDMVFMDCQMPVLDGYA 557

Query: 64  ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T++ +    +S  + IP++A+TA AM GD ER    G + Y+SKP++       +++++
Sbjct: 558 ATRRWRAMETESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLNACLQRWL 617

Query: 121 GE 122
             
Sbjct: 618 PR 619


>gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2]
 gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 245

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I++D+     L R  +   G+  +   +      +  +   D+I++D+ +    GL 
Sbjct: 12  KILILDDDARIRDLLRRYLAQEGFDVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLS 71

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  ++    P+I +TA     D     + G + Y++KP +    +  I   +  
Sbjct: 72  ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRR 128


>gi|332827584|gb|EGK00330.1| hypothetical protein HMPREF9455_03469 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1352

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            ++++EDN+       + +    Y      NG + L+ A  H PD+II DI + E+ G E+
Sbjct: 1100 ILVIEDNDDIRDYIHNSLSEQ-YKVYTASNGKKGLKEAYTHIPDIIISDIMMPEMDGFEL 1158

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++ +KED     IP+I +TA     D       G E+YI+KP S S+    +   +
Sbjct: 1159 SRILKEDVRTSHIPIILLTAKDSIQDRTEGYNIGVESYITKPFSASLLHSRVTNLL 1214


>gi|319640170|ref|ZP_07994896.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_40A]
 gi|317388157|gb|EFV69010.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_40A]
          Length = 1357

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            +++EDNE        L     Y   +  NG E  ++A    PD+II DI +    G    
Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGGDVAMSKIPDLIISDIMMPVKDGFTCC 1166

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++E      IP++ +TA A   D  +  K G + Y+ KP +  +    ++  I
Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221


>gi|300818609|ref|ZP_07098817.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300528781|gb|EFK49843.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
          Length = 260

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|269836215|ref|YP_003318443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785478|gb|ACZ37621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 231

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D E  + L RD +E  GY  L   +G  AL        D +++D+ +   SG +
Sbjct: 6   TVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGYD 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++I+E+   +++PV+ +TA     D+ R    G + +I K  +    +  IK  +  
Sbjct: 66  VLRRIREN---RDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRR 121


>gi|260776785|ref|ZP_05885679.1| chemotaxis regulator CheY [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606451|gb|EEX32725.1| chemotaxis regulator CheY [Vibrio coralliilyticus ATCC BAA-450]
          Length = 119

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 60/119 (50%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D+    ++    +  +GY      +G +AL      K DV+I D+ +  + G
Sbjct: 1   MTKILAVDDSVSIRQMVSHTLRDAGYEVETANDGRDALNKVASSKFDVVISDVNMPNMGG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ K +++  + + +P++ +T       +++ +  G   ++ KP +    ++T+K+ I
Sbjct: 61  FELVKALRDKPQYKFVPILMLTTETSTEKKQQGKSAGATGWLVKPFNPETLLKTLKRVI 119


>gi|229160850|ref|ZP_04288840.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803]
 gi|228622587|gb|EEK79423.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED  +  +L +D +E +GY      +G + L+       D++I+DI L  I G
Sbjct: 1   MKRILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQ++ +   ++IP++ V+A   + D+ +    G + YI KP S S  +  +  ++ 
Sbjct: 61  YEICKQVRLE---KDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 244

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           +++ED     ++  D ++ SG+      +G E +  AR   P V+I+D+ L  + G+E+ 
Sbjct: 13  LVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTASPAVVILDLGLPSLDGVEVC 72

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +Q++         ++ VTA A + D       G + Y++KP      M  I   +  
Sbjct: 73  RQLR---TFTNAYIVMVTARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRR 126


>gi|254432753|ref|ZP_05046456.1| two-component response regulator [Cyanobium sp. PCC 7001]
 gi|197627206|gb|EDY39765.1| two-component response regulator [Cyanobium sp. PCC 7001]
          Length = 240

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 1   MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58
           M +  ++ +V+D+    ++ +  +   GY      NG +        +PD++++D+ L  
Sbjct: 1   MARPHRIWVVDDDPELRQMLQRYLGDQGYEVRCLANGQQLTARLESQRPDLVVLDLMLPG 60

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             GL + ++++      ++PV+ +T      D     + G + Y++KP         I+ 
Sbjct: 61  DDGLCLLRRLR--DGGDDLPVLMLTGKGDAVDRIIGLEQGADDYLAKPFLPRELTARIEA 118

Query: 119 YIGE 122
            +  
Sbjct: 119 VLRR 122


>gi|162453846|ref|YP_001616213.1| hypothetical protein sce5570 [Sorangium cellulosum 'So ce 56']
 gi|161164428|emb|CAN95733.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 355

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 1/115 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+IV+D   N++L RD +   G+      NG+ A++LA++  PD+I++D++++ I G E
Sbjct: 9   TVLIVDDEPRNLRLLRDNLSGWGFEIAAATNGLRAIQLAKEVAPDLILLDVKMEGIDGFE 68

Query: 64  ITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             +++K D    +IPVI +TA   M  D+ +    G   ++ KP      +  ++
Sbjct: 69  TCRRLKTDPATSDIPVIFMTASTEMSADKVKGLNLGAVDFLLKPFQSEELLARVR 123


>gi|149280707|ref|ZP_01886817.1| sensor histidine kinase/response regulator fusion protein [Pedobacter
            sp. BAL39]
 gi|149228531|gb|EDM33940.1| sensor histidine kinase/response regulator fusion protein [Pedobacter
            sp. BAL39]
          Length = 1160

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
            K V+I +D+  N+      ++      +   NG EALE        D+++MDI + E+ G
Sbjct: 1041 KTVLITDDDMRNIFALSSALQVYDLKIIIANNGREALEKLAGPDTIDIVLMDIMMPEMDG 1100

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E  K I+ +    ++P+IA+TA AMK D E+  + G   YISKP+ +   +  ++ ++
Sbjct: 1101 YEAMKAIRMEKRFAKLPIIALTAKAMKNDREKCIEAGANDYISKPVDMDKLLSMLRVWL 1159



 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
            + ++I+ED+     +  D     G+  +   +G   LE+A    PD I++DI L  + G
Sbjct: 766 TQTLLIIEDDVTFADVLSDYAREKGFRPILAHSGDTGLEMALSELPDAIVLDIMLPVMDG 825

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
             + K++K D+  + IPV  ++A   K  +    + G   ++ KP+     
Sbjct: 826 WAVLKKLKADARTKHIPVHMMSAGNEKESK--AVQEGAIGFLKKPVEKDEL 874



 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 48/89 (53%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+++ED EL  ++  + +   G    Q   G EAL L      D II+D++L +ISG 
Sbjct: 891 KSVLVIEDQELQSRVLTEQLTEKGVDVKQAFTGQEALSLLEDQMFDCIILDLKLPDISGF 950

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDE 91
           ++  +IK+   L  IPVI  TA  +  D+
Sbjct: 951 DLLDKIKQQPALAHIPVIINTAMELDQDK 979


>gi|153816384|ref|ZP_01969052.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
 gi|145846272|gb|EDK23190.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
          Length = 240

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           VM+V+DN+  +    +L++  GY  +   +GMEAL L  Q+  D+I++D+ +  ++GL  
Sbjct: 12  VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLNGLSA 71

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++E      IPVI ++A   + D+      G + Y+ KP + +  M  +K ++  
Sbjct: 72  LMKLREKYR---IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRR 126


>gi|113866613|ref|YP_725102.1| response regulator [Ralstonia eutropha H16]
 gi|113525389|emb|CAJ91734.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 247

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+     L R+ +   G+      +G        + +P +I++D+ + ++ GL  
Sbjct: 9   ILVVDDDPELRDLLREYLTQQGFAVSVMHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++  ++  +IPVI +TA + + D     + G + Y+ KP S    +  I   +  
Sbjct: 69  LRNLRAKND--DIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRR 124


>gi|110834168|ref|YP_693027.1| sensor histidine kinase/respose regulator [Alcanivorax borkumensis
            SK2]
 gi|110647279|emb|CAL16755.1| sensor histidine kinase/respose regulator [Alcanivorax borkumensis
            SK2]
          Length = 1222

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61
            K++++V+D+  N+      +E  G+      NG EAL++   +   D+++MDI + E+ G
Sbjct: 1102 KQLLLVDDDMRNIYALSAQLEELGFSIHIANNGREALQVLDDNPSIDIVLMDIMMPEMDG 1161

Query: 62   LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
             E   +I+E S+  ++P++A+TA AMK D  +  + G   Y SKPI ++     ++ ++
Sbjct: 1162 YEAMARIREQSQFSKLPILALTAKAMKNDRAKCIEAGANDYCSKPIDMAKLTSLLRVWL 1220



 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K V+IVED++   ++  +L    G       +G + LE A  ++P  II+DI L  I G 
Sbjct: 834 KTVLIVEDDDEFARVLVELASDYGLEGHVCHDGEDGLEYASHYRPSAIILDIGLPGIDGW 893

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
           E+ +++K D   ++IPV  ++         +  + G   ++SKP +    +
Sbjct: 894 EVMEKLKADPRTKDIPVHFLSGRDE---RNKALEMGALDFMSKPANEDDIL 941



 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 53/103 (51%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +++++VED+++  +  R+L    G       NG +AL+  +    D +I+D+ L ++SG 
Sbjct: 956  RRLLVVEDSQIQHESIRELFNQKGVEITAATNGQQALDALKSTVFDCMILDLTLPDMSGF 1015

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105
            E+ + +  + +   +PV+  T   M  +EE   +   +  I K
Sbjct: 1016 ELLETLHANDDYGRVPVVVYTGKDMSREEEAKLRKYADRIILK 1058


>gi|75908456|ref|YP_322752.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
 gi|75702181|gb|ABA21857.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
          Length = 1156

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 61/116 (52%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+DN        D++  SGY     RNG E     ++  P++I+ D+ +  ++GLE+
Sbjct: 800 ILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKVQELVPNLIVTDLMMPLVTGLEM 859

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + I+ D +++  P+I +TA   +       + G +AY++KP +    +  ++  +
Sbjct: 860 IRMIRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLL 915



 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62
           K+++V+D   N+ L         Y  L+  +G  AL+ LA++ +  VII D ++  +SG 
Sbjct: 10  KILVVDDEPDNLDLLYRTF-YRDYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKKYI 120
           E        ++  +I  I +T +    D       G    Y++KP         +++ +
Sbjct: 69  EFLSL--TATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQAL 125


>gi|110634292|ref|YP_674500.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110285276|gb|ABG63335.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 1038

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 67/126 (53%), Gaps = 6/126 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQL 56
            +++++VED+  N+     + E  G      RNG EAL+   +         D+++MD+ +
Sbjct: 913  RRILVVEDDIRNVYALMSVFEGHGAAVQIARNGREALQALEKMADEGNPAIDLVLMDVMM 972

Query: 57   QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             E+ GL  T++I++    + +P+I +TA AM GD+E+    G   Y++KP+ +   +   
Sbjct: 973  PEMDGLTATREIRKRERWKNLPIIVLTAKAMPGDQEQCLAAGANDYLAKPLDVDKLLSLA 1032

Query: 117  KKYIGE 122
            + ++  
Sbjct: 1033 RVWMPR 1038



 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+    ++  DL    G+  L      E + LAR++ P  +I+DI L + +GL +
Sbjct: 647 ILVVEDDPAFARILMDLAHELGFECLVAETADEGVLLARRYLPAGVILDIGLPDHTGLSV 706

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
             +IK D   + IPV  V+           R  G   Y+ KP+        +
Sbjct: 707 LDRIKHDVRTRHIPVHVVSVSDYT---RTARSFGAAGYMLKPVKREELERAL 755



 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 43/94 (45%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V+IVED+   ++  + L+ +     +   +  E     +    D +++D+ L + SG 
Sbjct: 767 RRVLIVEDDATQLEALQLLLSSQDVETIAAASAAECFGKLKAETFDCMVLDLSLPDASGF 826

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96
           E+ +Q+  +      P I  T   +  DEE   +
Sbjct: 827 EVLEQLSAEDAYSFPPTIVYTGRDLTPDEELRLR 860


>gi|94313390|ref|YP_586599.1| two component heavy metal response transcriptional regulator,
           winged helix family [Cupriavidus metallidurans CH34]
 gi|93357242|gb|ABF11330.1| two component heavy metal response transcriptional regulator,
           winged helix family [Cupriavidus metallidurans CH34]
          Length = 206

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED           +  SG++A   R+G++ L  AR+   D+I++D+ L  + G +
Sbjct: 2   RILIVEDEPKAGDYLLKGLTESGFVADLARDGVDGLAHAREQHYDLIVLDVMLPGMDGWQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++ D   ++ PV+ +TA     D  +  + G + Y+ KP + +  +  I+  +  
Sbjct: 62  VLRELRRD---KDTPVLCLTARDELSDRLKGLELGADDYMVKPFAFAELVARIRTILRR 117


>gi|330950384|gb|EGH50644.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 227

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED      L RD +  +GY      NG++ +   R + P +I++DI L    G++I
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLPGRDGMDI 69

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K+++      ++P++ +TA   + D       G + YI KP S    +  +K  +  +
Sbjct: 70  CKELRS---FSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRS 125


>gi|298386943|ref|ZP_06996497.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298260093|gb|EFI02963.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1330

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             +++VEDNE  +    + ++   +      NG+EALE+ R    D+II DI +  + G +
Sbjct: 1061 TLLLVEDNESMLTFILERLQ-ENFTVETAMNGIEALEILRSGHIDLIISDIMMPVMDGYQ 1119

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K++K D EL  IP+I +TA      +    K G EAY+ KP S +   E +   +
Sbjct: 1120 LCKEVKSDMELSHIPIIFLTAKNDIDSKINGLKYGAEAYVEKPFSFNYLKEQVLSLL 1176


>gi|298241030|ref|ZP_06964837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554084|gb|EFH87948.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 226

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED     +     +  +GY  ++  +G  A+EL  +HKPD+ I+DI L ++SGL +
Sbjct: 3   VLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFVEHKPDLAIIDINLPKMSGLNV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            K I+       +P++ VTA     DE +    G + YI KP + ++ +  ++  +
Sbjct: 63  CKAIR---TTSTMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL 115


>gi|291568300|dbj|BAI90572.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 377

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 54/117 (46%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++++D   N  +    +    Y      +G E +   +  +PD+I++D+ +  I G+E+
Sbjct: 4   ILVIDDEPDNFDVIETFLSNQDYQLHYAASGQEGISALKLIQPDLILLDVMMPAIDGIEV 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++IK     Q  P+I VTA + K    +    G + +I KP++       +   + 
Sbjct: 64  CRRIKAMPLWQSTPIIMVTALSSKESLAKCIAAGADDFIGKPVNALELRSRVHSMLR 120


>gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 225

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +   ++    +E   Y      NG +AL+     + D II+DI L E++G E
Sbjct: 2   RILVVEDEKSLNEVIVKRLEDEHYGVDWCYNGKDALDNILITEYDAIILDIMLPELNGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++  +   + PV+ +TA     D  +    G   Y++KP +    +  I+  + +
Sbjct: 62  VLKTMRSKNI--DTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLRK 118


>gi|260771990|ref|ZP_05880907.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260612857|gb|EEX38059.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 240

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  + L  IP++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNANNL--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|229097240|ref|ZP_04228202.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229103326|ref|ZP_04234009.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229116236|ref|ZP_04245626.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228667068|gb|EEL22520.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228680165|gb|EEL34359.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228686051|gb|EEL39967.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 3/116 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED++   +L +  + T  Y  +   +G+E +        D+I++D+ +  ++G E++K 
Sbjct: 2   VEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNNQSFDLILLDVMMPNLNGFEVSKM 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I+  S    +P+I +TA   + D+ +    G + YI+KP S  + +  ++  +  +
Sbjct: 62  IRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 114


>gi|229132720|ref|ZP_04261566.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
 gi|228650730|gb|EEL06719.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED  +  +L +D +E +GY      +G + L+       D++I+DI L  I G
Sbjct: 1   MKRILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQ++     ++IP++ V+A   + D+ +    G + YI KP S S  +  +  ++ 
Sbjct: 61  YEICKQVR---LKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|256829207|ref|YP_003157935.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
 gi|256578383|gb|ACU89519.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
          Length = 1096

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 3/118 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++VED+ ++M   R ++E +G+      +G E L L R H  DVI+MD+QL  + GL+
Sbjct: 970  RILLVEDDSVSMFAARRVLEKAGHTVSMATDGSEVLPLLRAHDFDVILMDVQLPVMDGLQ 1029

Query: 64   ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             T  I+ ++ L     IP++A+TA+AM GD E+    G + YI+KP+S    ++ +++
Sbjct: 1030 ATAGIRSETSLGDKSRIPIVAMTAYAMSGDREKFLAAGMDDYIAKPVSAPELLDVLRR 1087


>gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
          Length = 223

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED     +     +   GY      +G+E L  A +   D++++DI L  ++G  
Sbjct: 2   RLLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIMLPGMNGYR 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++      ++PV+ +TA   + DE      G + Y++KP S  + +  +K  +  
Sbjct: 62  VCAALRA--AGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118


>gi|149911937|ref|ZP_01900535.1| hypothetical two-component response regulator [Moritella sp. PE36]
 gi|149804984|gb|EDM65013.1| hypothetical two-component response regulator [Moritella sp. PE36]
          Length = 225

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED++    +  D  E  GY     ++G++   LA  +  D+II+DIQ+  + GL 
Sbjct: 2   KILLVEDHQDIAGIIFDFFEIKGYTLDYAQDGVQGYALASNNYYDLIILDIQMPRMDGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E  +  + P++ +TA   + D       G + Y+ KP  L I    I+     
Sbjct: 62  VCQKLREQGD--DTPILMLTARDTREDTLAGFDCGADDYLIKPFDLDILAARIQALHRR 118


>gi|89891604|ref|ZP_01203108.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7]
 gi|89516151|gb|EAS18814.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7]
          Length = 238

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + +D +  + +  +  +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 6   KKILLVEDDPNFGTVLKDYLMMNDFDVVHAKNGMEGFEKFKKDNYDLCILDVMMPYKDGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +E  E+P+I +TA AMK D  R  K G + Y++KP    + +  IK  I  
Sbjct: 66  TLAKEIREKNE--EVPIIFLTAKAMKEDVLRGYKVGADDYLNKPFDSEVLLMKIKAIIQR 123


>gi|91791919|ref|YP_561570.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91713921|gb|ABE53847.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 234

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED+    +   D +   GY       G  ALE+     PD++++D+ +   +G 
Sbjct: 5   KHILVVEDDTSLAEWISDYLLDHGYGVTVASQGDYALEMIADELPDLVLLDVMIPVKNGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+ +E       P++ +TA    GDE +  + G + Y++KPI   + +  IK  +  
Sbjct: 65  DVCKEAREFYSG---PILFMTACVEDGDEIQGLEMGADDYLTKPIRPQVLLARIKALLRR 121

Query: 123 A 123
           A
Sbjct: 122 A 122


>gi|71278839|ref|YP_270816.1| response regulator/phosphatase [Colwellia psychrerythraea 34H]
 gi|71144579|gb|AAZ25052.1| response regulator/phosphatase [Colwellia psychrerythraea 34H]
          Length = 352

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61
             V+IV+DN  N+ +   ++    Y      NG  AL++A  ++KPD+I++DI +  + G
Sbjct: 14  ATVLIVDDNSDNLDVLSGVLRPF-YKVKAAINGELALKVASAKNKPDIILLDIMMPGMDG 72

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +Q+K +     IPVI VTA     DEE   K G   YI+KPIS+ I +  ++  +
Sbjct: 73  YEVCQQLKLNPSTANIPVIFVTAKTETKDEEAGFKLGAVDYITKPISVPIVLARVRAQL 131


>gi|329910114|ref|ZP_08275240.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546267|gb|EGF31298.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 231

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 56/118 (47%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED     +L +  +  +G+ +       EA     +  P+++++D  L + SGL +
Sbjct: 8   ILLVEDEPGIAELLQFTLADAGFSSHNAMTVQEARLAIAEQLPEIVLLDWMLPDGSGLTL 67

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++ +  +    +PVI +TA  M  D+ R    G + YI+KP S    +  I   +  
Sbjct: 68  LREWRSTAATAVLPVIMLTANGMDEDKVRGLNAGADDYITKPFSPRELVARIHSLLRR 125


>gi|325289762|ref|YP_004265943.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965163|gb|ADY55942.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV++++D    ++     +   G+  +  ++GM A+ + +Q +P + I+D+ +  + G E
Sbjct: 8   KVLLIDDEPNILQFLEMGLLNEGFDVMTAQDGMSAMTIVKQFQPHIAILDVMMPGMDGFE 67

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           + K +K+        +I +TA     D+ +    G + Y++KP S    +  I   + 
Sbjct: 68  VCKMLKKTENTA---IIMLTAKDEVDDKVKGLTLGADDYMAKPFSFEELLARIHARVR 122


>gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863]
 gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 260

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|298384668|ref|ZP_06994228.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298262947|gb|EFI05811.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 1420

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++VEDN       R ++    Y  L+  NG EAL +   +  D II D+ +  + G+E+
Sbjct: 1169 ILVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNPIDFIISDLMMPVMDGIEL 1227

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            ++++KE   +  IP + +TA   +       + G + Y+ KP   ++ +  I+  +
Sbjct: 1228 SRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNIL 1283


>gi|270291713|ref|ZP_06197929.1| DNA-binding response regulator DltR [Streptococcus sp. M143]
 gi|270279798|gb|EFA25639.1| DNA-binding response regulator DltR [Streptococcus sp. M143]
          Length = 224

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++ ED     ++    +E  GY      NG +A++ A  +   ++I DI +   +G+E
Sbjct: 2   KILLAEDETQLNRVITVALEREGYTVDSVFNGQDAVKKATTNHYHLMIFDIMMPIKTGIE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K+I++        VI +TA A   D       G + Y++KP SL   +  ++     
Sbjct: 62  ALKEIRQLGNTTH--VIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSTARR 118


>gi|302558457|ref|ZP_07310799.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
 gi|302476075|gb|EFL39168.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
          Length = 246

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   +      +   G++     +G  A++ A   +PD++I+DI L    GL
Sbjct: 20  RRVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 80  EVCRRVQAQ---RPLPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136


>gi|168206898|ref|ZP_02632903.1| DNA-binding response regulator KdpE [Clostridium perfringens E str.
           JGS1987]
 gi|170661686|gb|EDT14369.1| DNA-binding response regulator KdpE [Clostridium perfringens E str.
           JGS1987]
          Length = 237

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M   ++++ED +         +E + Y      NG + + LA   +PD+II+D+ L ++ 
Sbjct: 1   MKPSILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGMILAISKRPDIIILDLGLPDMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+EI K+++E       P+I V+A +   D+      G + Y++KP S+   M  I+  I
Sbjct: 61  GIEIIKKVRE---WSNCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAI 117

Query: 121 GE 122
            +
Sbjct: 118 RK 119


>gi|163758429|ref|ZP_02165517.1| putative contains a 2-component receiver domain protein [Hoeflea
           phototrophica DFL-43]
 gi|162284718|gb|EDQ35001.1| putative contains a 2-component receiver domain protein [Hoeflea
           phototrophica DFL-43]
          Length = 580

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N  +F  ++E          NG EAL   +   PD+I+MD+ +  ++GL+
Sbjct: 446 RILVAEDNHVNQIVFEQILEGIDADYRIVSNGEEALAAWQSSAPDLILMDVSMPVMNGLQ 505

Query: 64  ITKQIKEDSELQ-----EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T+ I++    +       P+IAVTA AM GD ER    G + Y+SKP+S       I +
Sbjct: 506 ATQAIRKAEAERPGGEAHTPIIAVTAHAMGGDRERCFDAGMDDYLSKPVSPDKLEAIIAR 565

Query: 119 YIG 121
           ++G
Sbjct: 566 WVG 568


>gi|114324570|gb|ABI63592.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|224798966|gb|ACN62988.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL   ++E   +      NG+EA E  ++ + D ++MD+Q+  + G E 
Sbjct: 1121 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1180

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T +I+E   D+ +   PVIA+TA AM GD E+      + Y+SKP+  +  ++TI +
Sbjct: 1181 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1237


>gi|21243530|ref|NP_643112.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109094|gb|AAM37648.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KKV++VED+  +  +    +   G+      +G  A++L RQ  PD++++D+ L ++SG+
Sbjct: 4   KKVLLVEDDSDSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+   I+      + PVI VTA   + ++    + G + Y+ KP S    +  +   +  
Sbjct: 64  EVLSTIRRAG---DTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 120

Query: 123 A 123
           +
Sbjct: 121 S 121


>gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
 gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
          Length = 868

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 72/115 (62%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDNE+N ++  +L+++ G+      +G  AL+   Q +  +++MDIQ+  + GL  
Sbjct: 599 ILLVEDNEINQQVALELLKSQGFKVDIAEHGQAALDAIEQKQYALVLMDIQMPVMDGLTA 658

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            K+I+   + +++P++A+TA AM GDEER    G + +I+KPI     ++ I K+
Sbjct: 659 AKKIRSYYDYKQLPILAMTANAMSGDEERSLSAGMQGHIAKPIDEKQLIKAIIKW 713



 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEIS 60
           K+V+ ++DN    ++ ++++ +        R   +AL++ R+     DV+++D +L  + 
Sbjct: 454 KRVLAIDDNLSTREMIQEMLRSYQVDVRVCRTAEQALDILREDLEPYDVLLVDWRLPGMD 513

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112
           GL + +++ +    +   +I  T +  +   E+    G    +SKP + +  
Sbjct: 514 GLSLCQRVYQSLASEAPKMILATGYYAEEMSEQAAAAGISDILSKPFTATTL 565


>gi|126172995|ref|YP_001049144.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|153002077|ref|YP_001367758.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160876795|ref|YP_001556111.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974655|ref|YP_002359406.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304410608|ref|ZP_07392226.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307304701|ref|ZP_07584451.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996200|gb|ABN60275.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151366695|gb|ABS09695.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160862317|gb|ABX50851.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499790|gb|ACK47983.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304351092|gb|EFM15492.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912103|gb|EFN42527.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315268997|gb|ADT95850.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 234

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K +++VED+    +   D +   GY       G  ALE+  +  PD++++D+ L   +G 
Sbjct: 5   KHILVVEDDISLAEWISDYLLDHGYEVTVASQGDFALEMIAEEIPDLVLLDVMLPVKNGF 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+ +        P++ +TA    GDE R    G + Y++KPI   + +  IK  +  
Sbjct: 65  DVCKEARAFYAG---PILFMTACVEDGDEIRGLDVGADDYLTKPIRPQVLLARIKALLRR 121


>gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 226

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++IVED E   +     ++  GY  ++  NG   LE+A + + D++++DI L EI+G
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEING 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           LE+ ++++      +IP+I +TA     D+      G + YI+KP ++   +  I+  
Sbjct: 61  LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTA 115


>gi|307138638|ref|ZP_07497994.1| transcriptional regulatory protein YedW [Escherichia coli H736]
 gi|331642590|ref|ZP_08343725.1| transcriptional activator protein CopR [Escherichia coli H736]
 gi|331039388|gb|EGI11608.1| transcriptional activator protein CopR [Escherichia coli H736]
          Length = 260

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++++EDN+   +     +  +GY+     +G + L LA +    +II+DI L  + G +
Sbjct: 39  KILLIEDNQRTQEWVTQGLSEAGYVIDAVTDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I + ++     ++ PVI +TA     D  R    G   Y+ KP S S  +  ++  + +
Sbjct: 99  ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154


>gi|260221381|emb|CBA29886.1| Transcriptional activator protein copR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 228

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++I+ED     +  R  ++ + +I     NG + L  A + + D+II+D+ L  + G E
Sbjct: 2   KILIIEDEPKTGEYLRQGLKEASFIVDLLHNGNDGLHAALEDEHDLIILDVMLPGMDGWE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + + ++      E+PV+ +TA     D  +  + G + Y+ KP S +  +  ++  +  
Sbjct: 62  VMRNLRRKGN--EVPVLFLTARDQVEDRIKGLELGADDYLVKPFSFAELLARVRTILRR 118


>gi|315498336|ref|YP_004087140.1| response regulator receiver protein [Asticcacaulis excentricus CB
           48]
 gi|315416348|gb|ADU12989.1| response regulator receiver protein [Asticcacaulis excentricus CB
           48]
          Length = 150

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN  N  +    +E  GY   +  NG EALE     +  +I+MD+Q+ E+ G E
Sbjct: 24  RILVVEDNPANALVASLFLEQMGYAHDRVENGREALEAFETGRYGLILMDLQMPEMDGYE 83

Query: 64  ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++I+          +P++A+TA A+ GD E     G   Y+SKP         +++ 
Sbjct: 84  ASRRIRALERETGRMAVPIVALTAHALSGDREACLLAGMNEYLSKPFKPDELQACLERL 142


>gi|226226840|ref|YP_002760946.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090031|dbj|BAH38476.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 245

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN L     R  +E  GY       G E L LA+     +I++D+ L +I G  +
Sbjct: 14  ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPDIDGFRV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            ++++E     E PV+ +TA   + D+ R  + G + Y++KP  L  F+  ++  +  +
Sbjct: 74  LRELREHGV--ETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRS 130


>gi|255305635|ref|ZP_05349807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+    ++  D + +  Y      +G  A+E+ + +  D+I++D+ L + SG E+
Sbjct: 3   ILLVEDDRNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            K I+  S    +PVI  TA     D+      G + YI+KP S+   +  IK  I  A
Sbjct: 63  LKYIRSVSV---VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRA 118


>gi|254442957|ref|ZP_05056433.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257265|gb|EDY81573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 799

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN++N K+ + L++  G       +G +A++  +    D + MD Q+  + G +
Sbjct: 670 RILVAEDNKINQKVIQLLLKRMGCSCKIVVDGEQAVKDMQTATYDFVFMDCQMPVLDGFQ 729

Query: 64  ITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            T++I++        P+IA+TA A+KG EE+  + G   +I+KPI     +E ++K+
Sbjct: 730 ATQRIRKTMPHHHNTPIIALTANALKGYEEKCYQAGMNDFITKPIDPDELLEIVEKW 786


>gi|254422490|ref|ZP_05036208.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189979|gb|EDX84943.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 871

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 9   EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68
           ED+         L+ +  Y+     +G+E   +A     D+I+MD  L ++ G+++ +Q+
Sbjct: 2   EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61

Query: 69  KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +      P+I +TA     D       G + Y+ KP      +  I+  +  +
Sbjct: 62  RNEGN--STPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRS 114



 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 63/122 (51%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
              +++V+D+   + L + L++  G+      +  +  +   + +PD++++DI++ ++SG
Sbjct: 568 TATLLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSG 627

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            ++ + ++ D    E+P++ ++A   +   + +   G + YI KPI     +  +  ++ 
Sbjct: 628 FDLCQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLA 687

Query: 122 EA 123
            +
Sbjct: 688 RS 689


>gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
 gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D +    +    ++   Y   +   G EAL+     K D+ I+DI L +I G +I
Sbjct: 3   ILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALDCIGGMKIDLAILDIMLPDIDGFQI 62

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            KQI+E       PVI +TA     D+      G + YI KP +    +  +K  +  
Sbjct: 63  LKQIREKYTF---PVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 117


>gi|154494827|ref|ZP_02033832.1| hypothetical protein PARMER_03869 [Parabacteroides merdae ATCC 43184]
 gi|154085377|gb|EDN84422.1| hypothetical protein PARMER_03869 [Parabacteroides merdae ATCC 43184]
          Length = 1313

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+DN   + L ++ + +  Y   +  N  EAL L  Q  PD+II DI +  + G  +
Sbjct: 1065 ILVVDDNRDIVWLIKETLSSE-YAVREAFNAEEALALMDQQTPDLIITDIMMPSMDGFAL 1123

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              +IK D   + IP+I V+A   + ++      G + Y++KP S  +    + + +
Sbjct: 1124 ISRIKSDKFTRHIPLIVVSAKVSESEQAEGLDLGADVYLTKPFSSVVLHSVVNRLM 1179


>gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905]
          Length = 241

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++IV+D    +KL    +    +I       G + L+L +++  D+I++DI L +ISG 
Sbjct: 6   KILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIMLPDISGF 65

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+  +I++ +     P+I V+A +   D+      G + YI+KP +    +  IK  +  
Sbjct: 66  ELCTEIRKHT---NTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRR 122


>gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 227

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED E      R   +   +  ++  +G E +  A   KPD+ I+D+ L  ++G E
Sbjct: 2   KILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGFE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++E      + +I +TA     D+    + G + Y+ KP +       +K  I  
Sbjct: 62  VCQKLRE--SFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118


>gi|148654494|ref|YP_001274699.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
 gi|148566604|gb|ABQ88749.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
          Length = 407

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++IVED+     L   ++  +GY  L      +AL LA  +  D++++D  L +  G++I
Sbjct: 7   ILIVEDDPTIASLVGIVLREAGYRTLHADTAADALRLAETNPFDLVVLDWMLPDTPGVQI 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-EA 123
              +KE +  + +P++ +TA     D       G + Y+SKP  +   M  ++  +   A
Sbjct: 67  CTALKERAGRRFLPILMLTAKGELSDRVTALDAGVDDYLSKPFYIEELMARVRALLRIRA 126


>gi|51597134|ref|YP_071325.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|153949110|ref|YP_001400191.1| BaeR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|170023569|ref|YP_001720074.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis YPIII]
 gi|186896226|ref|YP_001873338.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590416|emb|CAH22056.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|152960605|gb|ABS48066.1| transcriptional regulatory protein BaeR [Yersinia
           pseudotuberculosis IP 31758]
 gi|169750103|gb|ACA67621.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699252|gb|ACC89881.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
          Length = 239

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IVED     +L  D ++ +GY      NG E +   RQ  P +I++D+ L    G+ +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++I+      +IP++ VTA   + D     + G + YI KP S    +  +K  +  
Sbjct: 74  CREIR---RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128


>gi|331082776|ref|ZP_08331899.1| hypothetical protein HMPREF0992_00823 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400395|gb|EGG80037.1| hypothetical protein HMPREF0992_00823 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 239

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 7/126 (5%)

Query: 1   MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56
           M+K     V++VED+     L    +E   Y      NG +A+ LA  + PD+I+MD+ L
Sbjct: 1   MMKGNKPSVLVVEDDVPIRNLITTTLEMEKYKFDTAENGNQAIMLAAANNPDIILMDLGL 60

Query: 57  QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            +I G+E+ ++I+  S     P+I ++A + + D+      G + Y++KP S++     +
Sbjct: 61  PDIDGIEVIRKIRTWSVA---PIIVISARSDEKDKVSALDVGADDYLTKPFSVTELSARL 117

Query: 117 KKYIGE 122
           +     
Sbjct: 118 RATTRR 123


>gi|298383847|ref|ZP_06993408.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298263451|gb|EFI06314.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1433

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            +KV+I+ED+    +  +   E  G  +      +G    E AR +  D+II D+ +  ++
Sbjct: 1172 RKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMT 1228

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E+TK++K D     IP+I +TA           + G +AYI+KP S+ + +  + + I
Sbjct: 1229 GFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRLI 1288

Query: 121  GE 122
             +
Sbjct: 1289 EQ 1290


>gi|294678156|ref|YP_003578771.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476976|gb|ADE86364.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
          Length = 466

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 63/121 (52%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  K++IV+D   N  + +  +  + Y  +Q   G EAL L     PD++++D+QL +IS
Sbjct: 1   MAGKILIVDDVATNRIVLKVKLSGARYETVQAGTGQEALRLVTLELPDLVLLDVQLPDIS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +++K D   Q +PVI VTAF          + G + +I KP      +  ++  +
Sbjct: 61  GIEVCRRLKSDPLTQNLPVIMVTAFPSPETRLEALRAGADDFIVKPFEELTLLARLRSLM 120

Query: 121 G 121
            
Sbjct: 121 R 121


>gi|291454109|ref|ZP_06593499.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357058|gb|EFE83960.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   ++     +   G++     +G  A++ A   +PD++I+DI L    GL
Sbjct: 20  RRVLVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGL 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 80  EVCRRVQAQ---RPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136


>gi|260770826|ref|ZP_05879755.1| response regulator [Vibrio furnissii CIP 102972]
 gi|260614063|gb|EEX39253.1| response regulator [Vibrio furnissii CIP 102972]
          Length = 228

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++++D+     L ++++   G+   +  +G   L        D+I++D+ + +++G
Sbjct: 1   MAHILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAVND-SVDLILLDVMMPKLNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E  K+++E  +    PV+ +TA   + D     + G + Y+ KP S    +  I+  + 
Sbjct: 60  METLKKLREKWQT---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|253570047|ref|ZP_04847456.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251840428|gb|EES68510.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1433

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            +KV+I+ED+    +  +   E  G  +      +G    E AR +  D+II D+ +  ++
Sbjct: 1172 RKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMT 1228

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E+TK++K D     IP+I +TA           + G +AYI+KP S+ + +  + + I
Sbjct: 1229 GFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRLI 1288

Query: 121  GE 122
             +
Sbjct: 1289 EQ 1290


>gi|239928972|ref|ZP_04685925.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437309|ref|ZP_06576699.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340204|gb|EFE67160.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           ++V++VED+   +      +   G++     +G  A++ A   +PD++I+D+ L    GL
Sbjct: 20  RRVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDVMLPGFDGL 79

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ ++++     + +PV+ +TA   + D       G + Y++KP S+      +   +  
Sbjct: 80  EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136


>gi|218896059|ref|YP_002444470.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
 gi|218545392|gb|ACK97786.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
          Length = 896

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQNANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|160886208|ref|ZP_02067211.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483]
 gi|237723017|ref|ZP_04553498.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260173666|ref|ZP_05760078.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293372570|ref|ZP_06618952.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|299146715|ref|ZP_07039783.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|315921928|ref|ZP_07918168.1| two-component system response regulator [Bacteroides sp. D2]
 gi|156108093|gb|EDO09838.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483]
 gi|229447539|gb|EEO53330.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292632379|gb|EFF50975.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298517206|gb|EFI41087.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|313695803|gb|EFS32638.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EA+++       +I++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAMKM-DISSYHLILLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  ++P+I +TA   + D       G + YISKP SL   +  +K  +  
Sbjct: 64  MANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|153868883|ref|ZP_01998615.1| two-component system response regulator [Beggiatoa sp. PS]
 gi|152074551|gb|EDN71394.1| two-component system response regulator [Beggiatoa sp. PS]
          Length = 163

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           + ++IVED     +L RD +E S Y       G + +   +Q  P +I++DI L E+ G+
Sbjct: 4   QHILIVEDEIKIAQLLRDYLEKSDYTVSCLEQGDKVVPYVKQTIPTLILLDIMLPEMDGI 63

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+       +P+I +TA   + D     + G + YI KP S    +  +K  +  
Sbjct: 64  AVCREIR---TFSSVPIIMITAKVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRR 120


>gi|114324572|gb|ABI63593.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|224798968|gb|ACN62989.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL   ++E   +      NG+EA E  ++ + D ++MD+Q+  + G E 
Sbjct: 1121 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1180

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T +I+E   D+ +   PVIA+TA AM GD E+      + Y+SKP+  +  ++TI +
Sbjct: 1181 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1237


>gi|29349586|ref|NP_813089.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341496|gb|AAO79283.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1433

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
            +KV+I+ED+    +  +   E  G  +      +G    E AR +  D+II D+ +  ++
Sbjct: 1172 RKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKARTYDADLIICDVLMPGMT 1228

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G E+TK++K D     IP+I +TA           + G +AYI+KP S+ + +  + + I
Sbjct: 1229 GFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRLI 1288

Query: 121  GE 122
             +
Sbjct: 1289 EQ 1290


>gi|75761496|ref|ZP_00741459.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491013|gb|EAO54266.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 895

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 775 KTILIVDDDHRNIFALQNALKKQNANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 834

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 835 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 893


>gi|163848363|ref|YP_001636407.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526285|ref|YP_002570756.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163669652|gb|ABY36018.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450164|gb|ACM54430.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 527

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D      +    +  +G++ +   +   AL L  +   D++I+D  L +  GL 
Sbjct: 221 RILLVDDELDIRVILSQQLTDAGFVVVTAPDATTALRLMHEQFFDLVILDRLLPDSDGLN 280

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+     + IPV+ ++A +   ++ R  + G + Y+ KP S +     I+  +  +
Sbjct: 281 VLRTIRSSGTTRLIPVMLLSAVSSLDEKVRSLQLGADDYVVKPCSAAELAARIRSILRRS 340


>gi|332307241|ref|YP_004435092.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174570|gb|AEE23824.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 720

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K++IVEDNE+N ++ + ++E +GY      +G +A++     + D+I+MD+ +  + G+ 
Sbjct: 604 KILIVEDNEINAEVVKVMLEGAGYQVAIATDGEKAIQACIFEQYDLILMDMHMPVMDGIT 663

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            T +++ +    + P++A++A A   D +     G   ++SKPI     + TI + +
Sbjct: 664 ATIKLRTEMNFTQ-PIVALSANAFIEDRDNCLNAGMNDFLSKPIDKHALLTTINRQL 719



 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 7   IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66
           IV+D + + +    +++  GY      +  E L      + D +++D+ + +I+G+++  
Sbjct: 474 IVDDLQTSREYLEHVVKAQGYKTTVFAHAAEFLTS-DISQFDALLLDLSMPDINGIDVIN 532

Query: 67  QIKEDSELQEIPVIAVTA 84
            ++     +   +I V+A
Sbjct: 533 TMQTQQLSKRPHIILVSA 550


>gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED     +  R  +   G+ A     G E L  A +H  DV+++DI L E+SG E
Sbjct: 2   RLLIVEDEREFAETLRRGLVAEGFTADVAHTGREGLWRATEHAYDVVVLDIMLPELSGYE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++        PV+ +TA   + DE      G + Y+SKP S  + +  ++  +  
Sbjct: 62  VLKRLRAAENW--TPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRR 118


>gi|323342107|ref|ZP_08082340.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464532|gb|EFY09725.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 224

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I+ED E   +L R  ++  G+     ++G E LE+A Q + DVII+D  L    
Sbjct: 1   MSKKILIIEDEEGIRRLLRYDLKQMGFDVYSAKDGREGLEMALQGQYDVIIVDWMLPYHD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+  + ++      +  I +TA   + D       G + Y+SKP S       I  ++
Sbjct: 61  GIELVAKFRDRGLKAIL--IMLTAKDEEADILEAFDAGVDDYLSKPFSPRELSARITAHL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 221

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 2/116 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + ++++ ED           +  +G+      +G  A E A     D++++DI L  + G
Sbjct: 1   MSRILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGLPGMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
             + ++++   E   IPVI +TA     D     +GG + Y+ KP      +  ++
Sbjct: 61  FTVLRKLRA--ERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVR 114


>gi|229829767|ref|ZP_04455836.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
 gi|229791756|gb|EEP27870.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV+I+ED     +L +D +E S +      +G   L+ A +   D+ I+D+ L    G
Sbjct: 1   MSKVLIIEDERSIAELEKDYLELSEFSVDIETDGAAGLKKALEGDYDIFILDLMLPGADG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI ++I+E   +++ P++ V+A     D+ R    G + Y++KP S S  +  +K ++ 
Sbjct: 61  FEICQKIRE---VKDRPILMVSARKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|237722001|ref|ZP_04552482.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448870|gb|EEO54661.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1369

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
              +++VEDN          +    Y  +   NG +AL  A    P++II D+ + +++G+
Sbjct: 1116 ATILVVEDNRDLNNYICSCLADR-YNVVGVTNGEDALAKAVYLLPNLIITDLMMPKMNGI 1174

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E+ +++K+D     IP+I VTA     D +     G + YI+KP   SI    +   I
Sbjct: 1175 ELIRRLKKDMNTSHIPIIMVTAKTGTDDIKEGYAAGADEYITKPFDASILKIRVDNLI 1232


>gi|229099979|ref|ZP_04230899.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|228683407|gb|EEL37365.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED++   +L +  + T  Y  +   +G+E ++   +   D+I++D+ +  ++G E+ K 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I+  S    IP+I +TA   + D+ +    G + YI+KP S  + M  ++  +  +
Sbjct: 62  IRSQS---NIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114


>gi|256829806|ref|YP_003158534.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578982|gb|ACU90118.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 310

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
            ++IV+D  +N++    ++    +       G  ALE+AR    PD+I+MDI +  + G 
Sbjct: 9   TILIVDDEPVNIRALEIVLGDE-HDLTYATTGEMALEMARAEPQPDLILMDIVMPGLDGF 67

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+  ++K+D + + IPV+ +TA     +E +  + G   YI KP S  I    I+ ++
Sbjct: 68  EVCAELKKDDKTRNIPVVFLTAKWETSEEAKGLELGAVDYIRKPFSPPIIRARIRNHL 125


>gi|225872589|ref|YP_002754044.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196]
 gi|225791970|gb|ACO32060.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 60/122 (49%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M + + ++ED+    +L +  ++++GY           L  A +  P + ++DI +    
Sbjct: 1   MSQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++  + L  IP+I VTA A + D     + G + YI+KP +    +  +K  +
Sbjct: 61  GLDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 269

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V++V+D     +L    +   G+      +G  A++ AR+ +PD +++D+ L ++ GL 
Sbjct: 44  RVLVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMMLPDMDGLA 103

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           +  +++   EL ++PV+ +TA     D       G + Y++KP SL   +  ++  I  +
Sbjct: 104 VLGRLRR--ELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 161


>gi|172037291|ref|YP_001803792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698745|gb|ACB51726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 329

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 72/116 (62%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +M+++D+  N+KL  D+++  GY   Q+ NG+ AL+      PD+I++D+++ ++ G  +
Sbjct: 14  IMVIDDHVDNLKLLSDMLDEQGYEVRQSLNGLTALKSIELSSPDLILLDLKMPDMDGYTV 73

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +++K++ ++Q+IPVI ++A     D+ +    G   YISKP +L+  +  ++  +
Sbjct: 74  CQKLKKNPKVQDIPVIFISASDEVLDKVKAFSVGGCDYISKPFNLAEVLARVENQL 129


>gi|125717941|ref|YP_001035074.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125497858|gb|ABN44524.1| Two-component response transcriptional regulator (CheY-like
           receiver domain and a winged-helix DNA-binding domains),
           putative [Streptococcus sanguinis SK36]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M K +++V+D    + + +  +  +GY  L  R+G+E L+L R+   D+II DI +  + 
Sbjct: 1   MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLDLFRKKSVDLIITDIMMPNMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G +   ++     + + P +  TA   + D+      G + +I+KP S    +  +   +
Sbjct: 61  GYDFISEV--QYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNIL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|294644903|ref|ZP_06722639.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|294808798|ref|ZP_06767528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|292639716|gb|EFF57998.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|294443970|gb|EFG12707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1292

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y      NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 1027 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1085

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+ + IK + E   IPVI +TA   + D     + G + Y+ KP ++ I    +   +  
Sbjct: 1086 ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1145

Query: 122  EA 123
             A
Sbjct: 1146 RA 1147


>gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 224

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ ED +        +++ + Y      NG +ALE       DVII+DI + +++GLE
Sbjct: 2   RILLAEDEKELSNALVAILKHNNYSVDAVYNGADALEYGLSQNYDVIILDIMMPKMNGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             + +++       P++ +TA A   D       G + Y+SKP ++   +  ++     
Sbjct: 62  TLENLRKKGI--HTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRR 118


>gi|229172538|ref|ZP_04300097.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
 gi|228611009|gb|EEK68272.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +K+++I+ED  +  +L +D +E +GY      +G + L+       D++I+DI L  I G
Sbjct: 1   MKRILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            EI KQ++ +   ++IP++ V+A   + D+ +    G + YI KP S S  +  +  ++ 
Sbjct: 61  YEICKQVRLE---KDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLA 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|117926352|ref|YP_866969.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Magnetococcus sp. MC-1]
 gi|117610108|gb|ABK45563.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Magnetococcus sp. MC-1]
          Length = 353

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEI 59
           M +K+++V+D   N+++  + +    Y     R+G +A+ LA  +H+PD+I++D+ +  +
Sbjct: 1   MKQKILVVDDAPANLRILVESLSDE-YSIAAARDGHKAIALANAKHRPDLILLDVMMPGL 59

Query: 60  SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            G E+  ++K D    +IPV+ +TA   + +E R    G   +ISKP + ++    ++ +
Sbjct: 60  DGFEVCLKLKADPATWDIPVLFITALNDEENEVRGLTVGGVDFISKPFNPALVKARVRSH 119

Query: 120 I 120
           +
Sbjct: 120 L 120


>gi|86610149|ref|YP_478911.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558691|gb|ABD03648.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+   ++L +  +   G++    + G  A  L  +   D++I+D  L   SG++
Sbjct: 2   RILLVEDDPEQLELLQAALSKCGHVVDCAKEGEMAAWLMEEKAYDLLILDWMLPGPSGIQ 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +Q ++       PV+ +TA     D  +    G + Y+ KP+ L   +  ++     +
Sbjct: 62  LCRQYRQSGGCA--PVLMLTAKDATSDVVQGLDAGADDYLVKPVDLVELLARVRALGRRS 119


>gi|53723015|ref|YP_112000.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76819077|ref|YP_336261.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126444564|ref|YP_001063861.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126458151|ref|YP_001076746.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134278523|ref|ZP_01765237.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|167724960|ref|ZP_02408196.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei DM98]
 gi|167743904|ref|ZP_02416678.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 14]
 gi|167821087|ref|ZP_02452767.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 91]
 gi|167829447|ref|ZP_02460918.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 9]
 gi|167850926|ref|ZP_02476434.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei B7210]
 gi|167899528|ref|ZP_02486929.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 7894]
 gi|167907844|ref|ZP_02495049.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei NCTC 13177]
 gi|167916204|ref|ZP_02503295.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 112]
 gi|167924039|ref|ZP_02511130.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei BCC215]
 gi|217422676|ref|ZP_03454179.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|226197040|ref|ZP_03792618.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|237510348|ref|ZP_04523063.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242313953|ref|ZP_04812970.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254184632|ref|ZP_04891221.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|254185852|ref|ZP_04892370.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254193683|ref|ZP_04900115.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|254265562|ref|ZP_04956427.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
 gi|254300907|ref|ZP_04968351.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|52213429|emb|CAH39472.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76583550|gb|ABA53024.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126224055|gb|ABN87560.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126231919|gb|ABN95332.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134250307|gb|EBA50387.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|157811175|gb|EDO88345.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|157933538|gb|EDO89208.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169650434|gb|EDS83127.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|184215224|gb|EDU12205.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|217394907|gb|EEC34926.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|225931023|gb|EEH27032.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002553|gb|EEP51977.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242137192|gb|EES23595.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254216564|gb|EET05949.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 230

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           KV+IVED        +  +  +G++   T++G+  L   +    D+ I+D+ L    G  
Sbjct: 2   KVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGWT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++        PV+ +TA     D  +  + G + Y++KP   +  +  ++  +  
Sbjct: 62  VVRELR---RTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117


>gi|87119109|ref|ZP_01075007.1| putative two-component response regulator [Marinomonas sp. MED121]
 gi|86165500|gb|EAQ66767.1| putative two-component response regulator [Marinomonas sp. MED121]
          Length = 220

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VEDN        D +    +      NG  A++L  + + D+II+DI +  ++GL 
Sbjct: 2   RILVVEDNHATAANLGDYLALFDHHVDFAYNGQAAIQLLDESRFDLIILDIMMPVMNGLT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
               I+      +IP+I +TA     D+    K G + Y+ KP  L      ++  
Sbjct: 62  ACHAIRA-GYHADIPIIFLTARDTLEDKLAGFKAGADDYLVKPFELQELHARVQAL 116


>gi|120600851|ref|YP_965425.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146295051|ref|YP_001185475.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560944|gb|ABM26871.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145566741|gb|ABP77676.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 242

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+I ED      +    ++ SG       +G++AL + +  KPD++++D+Q+  + G  +
Sbjct: 16  VLIAEDEAEIADILIAYLQRSGLRTQHAIDGIQALAMHQTFKPDLLLLDVQMPNLDGWNV 75

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
             +I+      + PVI +TA     D+    + G + Y+ KP + +  +  ++  +  A
Sbjct: 76  LNEIRSRG---DTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRRA 131


>gi|319411626|emb|CBQ73670.1| related to histidine kinase (C-terminal fragment) [Sporisorium
            reilianum]
          Length = 1516

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 69/118 (58%), Gaps = 2/118 (1%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N ++    ++  G+     ++G+EA+E   +H  D+I+MD  +    G E 
Sbjct: 1135 ILVAEDNLINAQIALKTLKKMGFSCKVAKDGLEAIEEVGKHPYDLILMDCHMPNCDGYEA 1194

Query: 65   TKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            TK++++    +++  P+IA+TA A++GD E+    G   Y+SKP+  +    T+ K++
Sbjct: 1195 TKRLRKSDSVDVRTTPIIAMTASAIRGDREKCLAAGMSDYLSKPVKSAALESTLVKWL 1252


>gi|313113963|ref|ZP_07799519.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623726|gb|EFQ07125.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 982

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59
           + +++VEDNELN ++ ++++   G+      NG  A+E      P   D+++MD+Q+  +
Sbjct: 860 RHILLVEDNELNREIAQEILCEYGFRVDTAENGAVAVEKVSTAAPGSYDLVLMDVQMPVM 919

Query: 60  SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            G   T+QI+   D  L +IP++A+TA A   D     + G   ++SKPI +   ++ ++
Sbjct: 920 DGYTATRQIRALGDPALAKIPILAMTANAFDDDRRNALESGMTGFLSKPIVIGDLVQELR 979

Query: 118 KYI 120
           K +
Sbjct: 980 KIL 982



 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58
           K ++V+D+         ++   G  A  T +G EA+  ARQ           I+D +L +
Sbjct: 719 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDAYHAYIIDWRLPD 778

Query: 59  ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
           ++G+E+T+QI+  +   + P+I +TA+     E   +  G  A+ SKP+ +S   ET+  
Sbjct: 779 MNGIEVTRQIRSLNN--DTPIIILTAYDWSDIEVEAKAAGVTAFCSKPMFMSDLRETLMS 836

Query: 119 YIGE 122
            IG+
Sbjct: 837 AIGQ 840


>gi|255011940|ref|ZP_05284066.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313149776|ref|ZP_07811969.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138543|gb|EFR55903.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 736

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 74/120 (61%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K+++IVED E N  L + L++  GY   +  +G+EA+E       D+++MDI++  + GL
Sbjct: 607 KRILIVEDIESNYLLMQILLKGKGYRCYRAADGVEAVEKVLSEHFDLVLMDIKMPRLDGL 666

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E T++I++ +  +E+P++A+TA A   D+E     GC+ Y+ KPI+     + + KY+ E
Sbjct: 667 EATREIRKTN--REVPIVALTAHAFNADKELAIAAGCDGYLVKPINEKALNKVLGKYLRE 724


>gi|229828736|ref|ZP_04454805.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
 gi|229793330|gb|EEP29444.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++++D    + L ++ +E  G+  L    G E + LARQ  PD+I++DI + +++G
Sbjct: 1   MSKILLIDDEVELLMLLKNELEARGHRVLTAYRGEEGIALARQE-PDLILLDIMMPDMNG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + I++       P++ ++A   + D+      G + +ISKP  L   +  I+  + 
Sbjct: 60  FEVCRAIRDQIL---CPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 236

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 11  MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D+     P++ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 71  GLRVLQRLRADNNA--TPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 239

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61
           K+++V+D++  ++L    ++  GY  +   +G EA+       PD  ++I+D+ +  +SG
Sbjct: 13  KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKL-TTTPDIALMILDVMMPNMSG 71

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ K++++DS   +IP+I V+A     D+ +    G + Y+SKP +    M  ++  + 
Sbjct: 72  IEVIKEVRKDS---DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLR 128

Query: 122 EA 123
            +
Sbjct: 129 RS 130


>gi|332702845|ref|ZP_08422933.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552994|gb|EGJ50038.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 562

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++ EDN +N  +  ++++  G+       G EAL+   +   +V++MD Q+ E+ G+E 
Sbjct: 442 ILLAEDNPINQFVLTEMLKVRGHAVTVAATGREALDRLAERPFEVVLMDAQMPEMDGVEA 501

Query: 65  TKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           T++I+E         IP+IA+TA+A+ GD ER    G + YI KP+ +      +     
Sbjct: 502 TRRIREGQVPGAPANIPIIALTAYALSGDRERFLNAGMDDYIPKPVDMDDLDAKLNAIPR 561

Query: 122 E 122
            
Sbjct: 562 R 562


>gi|325660821|ref|ZP_08149449.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472895|gb|EGC76105.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VED+     L    ++  GY      NG  A+  A  + PD++++D+ L ++ G+EI
Sbjct: 6   ILVVEDDTSVRNLITTTLKAHGYRYQTAANGQTAILEASSYNPDIVLLDLGLPDMDGVEI 65

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117
            ++I+       +P+I ++A +   D+      G + Y++KP S+   +  ++
Sbjct: 66  IRKIRS---WSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLR 115


>gi|255035279|ref|YP_003085900.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948035|gb|ACT92735.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1404

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 6    MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
            ++V+D+    +    +     Y   +  +G E LEL R+H PD++I D+ +  ISG+E+ 
Sbjct: 1139 LVVDDDPEIRQYLSTVFAGK-YKIFEAGSGEEGLELVRKHLPDIVISDVMMGGISGIELC 1197

Query: 66   KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            +Q+K D  L  IPVI +TA   +    +  +GG + +ISKP    I +  +   + 
Sbjct: 1198 RQMKLDMALSHIPVILLTASTSQDVRLKGIEGGADDHISKPFDNGILVARVASILR 1253


>gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 236

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 11  MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D+   E PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 71  GLHVLQRLRGDNN--ETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 221

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED +         +   GY      +G+E L +A +   D++I+DI L  ++G  
Sbjct: 2   RLLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMASEGVHDLVILDIMLPGMNGYR 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   ++      ++P++ +TA   + DE      G + Y++KP S  + +  +K  +  
Sbjct: 62  VCAALRA--AGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118


>gi|145299703|ref|YP_001142544.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852475|gb|ABO90796.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 698

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 70/115 (60%), Gaps = 2/115 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++VED+ +N  +   +++          NG+EAL    + KPD+I+MD+++ ++ GLE 
Sbjct: 577 VLVVEDSPVNQLVVSLMLQKLVTRVRVAANGLEALAQVAEQKPDLILMDMRMPQMDGLEA 636

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           T++++E     ++P++A+TA AM  D  R    G + +++KPISL    E +++Y
Sbjct: 637 TRRLRELG--CKMPIVALTANAMAEDRARCLAQGMDDFLAKPISLMRLRECLQRY 689


>gi|120402833|ref|YP_952662.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955651|gb|ABM12656.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 251

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           + ++V+D     ++    +E   +  +   NG++A+ +AR+  PDV+I+D+ L  I GLE
Sbjct: 16  RALVVDDEVPLAEVIAGYLEREQFETIVAANGLDAISVARELDPDVVILDLGLPGIDGLE 75

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +QI+      +  V+ +TA   + D       G + Y++KP S    +  I+  +  
Sbjct: 76  VCRQIR---TFSDAYVVMLTARDTEIDTVLGLTVGADDYVTKPFSPRELVARIRAMLRR 131


>gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 228

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D++  ++L    ++  GY  +   +G EAL     +    ++I+DI + ++SG+
Sbjct: 2   KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSGI 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ K++++DSE   IP++ V+A     D+ +    G + Y+ KP +    M  ++  +  
Sbjct: 62  EVIKEVRKDSE---IPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118

Query: 123 A 123
           +
Sbjct: 119 S 119


>gi|330995652|ref|ZP_08319550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paraprevotella xylaniphila YIT 11841]
 gi|329574711|gb|EGG56272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paraprevotella xylaniphila YIT 11841]
          Length = 232

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E    + +  +E  GY      +  EAL++    K  ++++D+ + EISG +
Sbjct: 6   RILVVDDEEDLCDILKFNLENEGYEVETANSAEEALKM-DLAKFHLLLLDVMMGEISGFK 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K +K+  E ++IP+I +TA   + D       G + YISKP SL      IK  +  
Sbjct: 65  MAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVLRR 123


>gi|313672616|ref|YP_004050727.1| response regulator receiver protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939372|gb|ADR18564.1| response regulator receiver protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 120

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++ +D+    +  R ++   G+  +   +G +A+E  R  K D I++D+ +   +G
Sbjct: 1   MAKILVADDSITEREFIRKILVGEGHEVVTVEDGDKAIEKLRADKFDCILLDVVMPGKNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +I + IK+D   + IPVI +T+     D+    K G + Y+ KP+S    +  IKK++
Sbjct: 61  FQICRDIKKDDFTKNIPVILITSKGQDSDKFWGMKQGADDYLVKPVSEEQIISAIKKFL 119


>gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 217

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED      L +  +  + Y      NG EAL+       D+I++D+ L +I G
Sbjct: 1   MIKILVVEDELPISNLIKLNLNMANYECKTAFNGEEALKEIENDSFDLILLDVMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++IK       IPVI +TA     D+    + G + YI+KP      +  I   + 
Sbjct: 61  FTLLEKIKPLG----IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLR 116


>gi|168184125|ref|ZP_02618789.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794198|ref|YP_002861750.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672851|gb|EDT84812.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261611|gb|ACQ52644.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 223

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + KV++VED+    KLF  ++  +GY +++ ++G  AL++  +   D+II DI +  + G
Sbjct: 1   MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDILYKEYIDLIISDIMMPNMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +TK I+E +    +P++ +TA     D++   + G + Y+ KPI ++  +  +   + 
Sbjct: 61  YTLTKLIRESNN--NVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|254252356|ref|ZP_04945674.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124894965|gb|EAY68845.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 225

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IVED        +  +E SG+     ++G E L LA++   DVI++D+ L  + G  
Sbjct: 2   RILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEESYDVIVLDVMLPVLDGWG 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K+++   +    PV+ +TA     D     + G + Y+ KP +    +  ++     
Sbjct: 62  VLKRLR---DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARR 117


>gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4]
 gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4]
          Length = 229

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
           K+++V+D++  ++L    I+  GY   +  NG EAL   +  K  D++++D+ +  + G 
Sbjct: 2   KILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDGN 61

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           ++ K+++++    ++P++ ++A     D+ +    G + Y++KP +    M  IK  +  
Sbjct: 62  QVVKEVRKE---MQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRR 118

Query: 123 A 123
           +
Sbjct: 119 S 119


>gi|323494579|ref|ZP_08099683.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
 gi|323311182|gb|EGA64342.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
          Length = 239

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL 
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++  +    +P++ +TA   + D     + G + Y+ KP +    +  IK  +  
Sbjct: 66  ICRRLRNANNT--LPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122


>gi|302521034|ref|ZP_07273376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429929|gb|EFL01745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 264

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V+ VED+++  +  +  +E  G+      +G++ LE  R   PD+ ++D+ +  + G+
Sbjct: 37  ARVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGV 96

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++I+++S    +PVI ++A A   D     + G + Y++KP  +S+ +  ++  +  
Sbjct: 97  SLCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153


>gi|260219834|emb|CBA26763.1| hypothetical protein Csp_G38260 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 359

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 58/119 (48%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+IV+D   N+ +  D ++ SGY  L   +G  AL  A Q  PDVI++D  +  + G E+
Sbjct: 53  VLIVDDVPDNLSVLHDALDESGYTVLIATSGEAALMRAMQALPDVILLDAMMPGMDGFEV 112

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
            +++K   +   IP+I +T            + G   Y++KPI     +  +  ++  A
Sbjct: 113 ARRLKAAPQTTHIPIIFMTGLTETEYLVAALESGGVDYVTKPIKPKEVLARMGVHLAGA 171


>gi|254517513|ref|ZP_05129569.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911262|gb|EEH96463.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 231

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V++V+D +         +   G    + ++G+EALEL  + K  +I++DI +  + G++ 
Sbjct: 4   VLVVDDEKEIRDAIDIYLRGEGMKVFKAKDGVEALELLDKEKIHLIVLDIMMPRMDGIKT 63

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +I+E    + +P+I ++A     D+      G + YI+KP +    +  +K  +  
Sbjct: 64  CLKIREK---RNLPIIMLSAKGEDSDKILGLNVGADDYIAKPFNHLELVARVKSQLRR 118


>gi|197301304|ref|ZP_03166389.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC
           29176]
 gi|197299622|gb|EDY34137.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC
           29176]
          Length = 220

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++ V+D    +++   ++   G++  +  N ++ + +   H+ D+I++DI +  + G
Sbjct: 1   MAKILAVDDEPAILEMIESILNKDGHLVTKVSNPLK-INMEELHRYDLILLDIMMPGMDG 59

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ K+I+    L + P++ +TA   +         G + YISKP  +      I  ++ 
Sbjct: 60  FELCKRIRA---LVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
 gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 228

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M KK++I+ED +   +     ++  GY      NG E LE A +   D+I++D+ L E+ 
Sbjct: 1   MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G E+T++++ +   +   ++ +TA     D       G + YI KP ++   +  I+   
Sbjct: 61  GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIF 117

Query: 121 GE 122
             
Sbjct: 118 RR 119


>gi|254429359|ref|ZP_05043066.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195528|gb|EDX90487.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 236

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++V+D+     L +  +E +GY      +  +      +    ++++D+ L    GL 
Sbjct: 7   KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLPGEDGLS 66

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           I ++++E   +  +P+I +TA     +       G + Y+ KP +       I+  +  
Sbjct: 67  ICRRLREAENV--MPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRR 123


>gi|154490756|ref|ZP_02030697.1| hypothetical protein PARMER_00670 [Parabacteroides merdae ATCC
           43184]
 gi|154088873|gb|EDN87917.1| hypothetical protein PARMER_00670 [Parabacteroides merdae ATCC
           43184]
          Length = 485

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           V+++ED++      + L++   Y      NG E L+L ++ KPD+I+ D+ +  + G E+
Sbjct: 237 VLVIEDDQDLRDSLQRLLQ-EKYTISMAANGEEGLKLVQEIKPDLILSDVMMPIMDGFEL 295

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            KQ+K   E   IP+I +TA     D       G +AYI+KP + ++    I   I
Sbjct: 296 CKQLKRKKETSCIPIILLTAKINDKDYLEGLNCGADAYITKPFNFNVLQANIDMVI 351


>gi|317485692|ref|ZP_07944563.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923057|gb|EFV44272.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 1132

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ EDN +N ++   L+E +        NG+EAL L  +   D++ +DIQ+ ++ G E
Sbjct: 763 RILVAEDNPVNQEIMSVLLEETRAQLKMAGNGIEALALLEREAFDLMFLDIQMPDMDGYE 822

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             K ++E   +  +PV+A+TA AM+ D++R    G +AY+SKP   ++  +TI   + E
Sbjct: 823 TIKIMRERGYV--LPVVALTAHAMQSDKQRCLDAGMDAYLSKPFKQALLFDTIHSLLPE 879


>gi|317495281|ref|ZP_07953651.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914703|gb|EFV36179.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 238

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M ++V++++D E   KL    +E  GYI  +  NG + LE  +      +++D+ L  ++
Sbjct: 1   MAERVLVIDDEERIRKLLIMYLEKEGYIVDEASNGQDGLERLKYMDYSCVLLDVHLPILN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G  I  ++++    +  PVI ++A A +       + G + Y+ KP S    M  I   +
Sbjct: 61  GKSILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAIL 117

Query: 121 GE 122
             
Sbjct: 118 QR 119


>gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 228

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM--DIQLQEISG 61
           K+++V+D++  ++L    ++  GY  +   +G EA+       PD+++M  D+ +  +SG
Sbjct: 2   KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKL-STTPDIVLMILDVMMPNMSG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +++ K++++DS   +IP+I V+A     D+ +    G + Y+SKP +    M  ++  + 
Sbjct: 61  IDVIKEVRKDS---DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|294643338|ref|ZP_06721159.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|292641309|gb|EFF59506.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
          Length = 1117

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 6   MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65
           ++VEDN+   +  R +     Y  ++  +G E    A ++ PD+II D+ + E  G+E+T
Sbjct: 831 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 889

Query: 66  KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           ++++ D     IP+I +TA      +    + G + YI+KP S       ++  +
Sbjct: 890 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLL 944


>gi|285265587|gb|ADC35361.1| histidine kinase protein [Alternaria alternata]
          Length = 1329

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++ EDN +N KL   ++E   +      NG+EA E  ++ + D ++MD+Q+  + G E 
Sbjct: 1120 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1179

Query: 65   TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
            T +I+E   D+ +   PVIA+TA AM GD E+      + Y+SKP+  +  ++TI +
Sbjct: 1180 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1236


>gi|315504995|ref|YP_004083882.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315411614|gb|ADU09731.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 230

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++V+D     K+    +E  G+      +G  A+  AR+ +PDV+++D+ L  + 
Sbjct: 1   MGVRVLVVDDERSLAKVVASYLERDGHEVSCVFDGRSAVAAARRDRPDVVVLDLALPGLD 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           G+E+ +QI+      +  V+ +TA + + D+      G + Y++KP S    +  I+  +
Sbjct: 61  GIEVCRQIR---TFTDCYVVMLTARSEEVDKLIGLGVGADDYLTKPFSPRELVARIRAML 117


>gi|270293867|ref|ZP_06200069.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275334|gb|EFA21194.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 229

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY      +  EAL +       ++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALRM-DIGSYSLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  +IP+I +TA   + D       G + YISKP SL      +K  +  
Sbjct: 64  MASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122


>gi|322419693|ref|YP_004198916.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320126080|gb|ADW13640.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 453

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 61/117 (52%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++IV+D+    K    ++   GY     RNG +AL+      PD++I DI + E+ G E
Sbjct: 14  RILIVDDSPTQAKFLELMLVEQGYRVQVARNGSDALDRILSQAPDLVISDILMPEMDGFE 73

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + ++++   +  ++P+I +T      D     + G + ++SKP S ++ +  I+  +
Sbjct: 74  LCRRVRALDQAGDLPIILLTHLNDPADVLHSLEVGADYFVSKPYSRTLLLSRIRSVL 130


>gi|228957374|ref|ZP_04119133.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802323|gb|EEM49181.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 896

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQNANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 236

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I 
Sbjct: 11  MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL + ++++ D+     PV+ +TA     D       G + Y+ KP +    +  I+  +
Sbjct: 71  GLHVLQRLRADNNA--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128

Query: 121 GE 122
             
Sbjct: 129 RR 130


>gi|307154214|ref|YP_003889598.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
 gi|306984442|gb|ADN16323.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
          Length = 140

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 61/115 (53%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +KK++++ED     +   +L+E  G+    T NG+ AL  A  + PD+II D+ + EI G
Sbjct: 1   MKKILVIEDELSVRENLVELLEAEGFQVFSTDNGILALLWAEDNLPDLIICDVMMPEIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116
            E+ + +++      IP I +TA A K D     + G + Y++KP +    +  I
Sbjct: 61  YEVLEGLRQIPMRASIPFIFLTAMADKADIRYGMELGADDYLTKPFTREELLRAI 115


>gi|254410144|ref|ZP_05023924.1| hypothetical protein MC7420_7902 [Microcoleus chthonoplastes PCC
           7420]
 gi|196183180|gb|EDX78164.1| hypothetical protein MC7420_7902 [Microcoleus chthonoplastes PCC
           7420]
          Length = 124

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 69/120 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K++++ED E   +   +L++  G+ A+   NG + L LA+QH PD+I+ D+ + E+ G
Sbjct: 1   MVKILVIEDEESVRENILELLDAEGFDAIIAENGQKGLHLAQQHDPDLILCDVLMPEMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +   ++   +   IP + +TA A K D ++    G  AY++KP +L+  ++ I  +IG
Sbjct: 61  YGVLSALRSQGKTATIPFLFLTAKAAKTDIKQGMNLGANAYLTKPFTLAELLDAIATHIG 120


>gi|146301611|ref|YP_001196202.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146156029|gb|ABQ06883.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 1373

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
             ++IVEDN       ++ ++   Y  L   NG   LE A Q  PD+I+ D+ +  ++GLE
Sbjct: 1130 TILIVEDNTELRNYLKNELKKE-YKVLTAENGQIGLETALQKLPDLILTDVIMPVMNGLE 1188

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + K IK D +   IP++ ++A A+  D+      G + Y+SKP  + I   ++ + +
Sbjct: 1189 LCKSIKADLKTSHIPLMMLSAKALIKDKLEGIDSGADMYLSKPFDMDILRSSLVQLL 1245


>gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 257

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED+    +     +  +GY+  +  +G E   L      D +++DI L ++ G+ 
Sbjct: 30  RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +  + ++  + +PV+ +TA     D+ +    G + Y++KP  L   +  I+  +  +
Sbjct: 90  VLEAWRRNA--RAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRS 147


>gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 224

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           M  +V++VE+ E   +     ++  GY     R+G++    A++  PD+II++  L  +S
Sbjct: 1   MSHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMS 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GLE+ ++++E      IP+I +TA     +       G + YI KP +   F   I+  +
Sbjct: 61  GLELCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQL 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|93007292|ref|YP_581729.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter
           cryohalolentis K5]
 gi|92394970|gb|ABE76245.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter
           cryohalolentis K5]
          Length = 974

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 66/118 (55%), Gaps = 4/118 (3%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62
           +++VED+  N K+   ++   GY ++   +G +AL++ +  +   D+I+MD ++  + GL
Sbjct: 857 ILVVEDSPTNQKIACKMLAKLGYRSVVAEDGQQALDILQAQRQEIDLILMDCRMPVMDGL 916

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           + T+ I+   +  +IP++A+TA   + D     K G + +++KPI+     + +   I
Sbjct: 917 QATQAIRAQGD--DIPIVALTANNTEEDRSACLKVGMDEFLAKPINKDKLQDVLTALI 972


>gi|317126106|ref|YP_004100218.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590194|gb|ADU49491.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 244

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            +V++V+D     ++  D I  +GY+ L+   G +A+  AR+  PDVI++D+ L    G+
Sbjct: 13  ARVLVVDDERDIAEMVSDYIGRAGYVTLEAYTGPDAVSAAREFDPDVIMLDLGLPGFDGV 72

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           E+ +QI+      +  ++ +TA A +         G + YI+KP S +  +  I+  +  
Sbjct: 73  EVCRQIR---MFSDCYILMLTARADEVARVVGLSVGADDYITKPFSTNEVLARIQAVLRR 129


>gi|194288688|ref|YP_002004595.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
 gi|193222523|emb|CAQ68526.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 247

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+     L R+ +   G+      +G        + +P +I++D+ + ++ GL  
Sbjct: 9   ILVVDDDPELRDLLREYLTQQGFAVSVMHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + ++  ++  +IPVI +TA + + D     + G + Y+ KP S    +  I   +  
Sbjct: 69  LRNLRARND--DIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRR 124


>gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
 gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
          Length = 221

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  V++ ED +    +  + ++  G+  +   +G++A+ + +    D+ I+DI +  + G
Sbjct: 1   MAIVLVAEDEKDMQDIIVEYMKGGGHSCITADDGIDAVTILKNTPVDLAILDIMMPHLDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + K  +E      IP+I +TA   + D+ +    G + Y++KP S  + +  +   + 
Sbjct: 61  FSVCKIAREM---YNIPIIFLTAKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALLR 117

Query: 122 EA 123
            +
Sbjct: 118 RS 119


>gi|160890309|ref|ZP_02071312.1| hypothetical protein BACUNI_02750 [Bacteroides uniformis ATCC 8492]
 gi|156860041|gb|EDO53472.1| hypothetical protein BACUNI_02750 [Bacteroides uniformis ATCC 8492]
          Length = 240

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V++VED +    + +D +E   +I     +G E L      +PDV++ D+ +  + G E
Sbjct: 5   TVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRKFFDLRPDVLVADVMMPRMDGFE 64

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++I++    ++ PV+ +TA +   D     + G   Y+ KP  +   +  IK  +G+A
Sbjct: 65  MVRRIRQTD--KQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALVGKA 122


>gi|149235444|ref|XP_001523600.1| hypothetical protein LELG_05016 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452579|gb|EDK46835.1| hypothetical protein LELG_05016 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1142

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
             K+++ EDN +N KL   ++E  G+      NG+EA E  ++++ DV++MD+Q+  + G
Sbjct: 869 SYKILLAEDNLVNQKLAVRILEKQGHQVEVVENGLEAFEAVQKNRYDVVLMDVQMPVMGG 928

Query: 62  LEITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113
            E  ++I++  +            P+IA+TA AM GD E+    G + Y+SKP+   + M
Sbjct: 929 FESVEKIRQWEKKSNPIDYLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLM 988

Query: 114 ETIKKYI 120
           +TI K I
Sbjct: 989 QTINKCI 995


>gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           K+++VED +      +  +E   Y      NG + L++A +   D+II+D+ L +  GL 
Sbjct: 2   KILVVEDEKKVSSFIKRGLEEERYEVEAAFNGEDGLKMALEKGFDLIILDVMLPKKDGLS 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + ++++E       PV+ +TA     D       G + Y++KP + +  +  ++  +  +
Sbjct: 62  VVRELRERKNA--TPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRS 119


>gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
 gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
          Length = 224

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           ++ ++I+ED E         ++  GYI     +G + LE A +   D+I++D+ L  ++G
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALEKNYDLILLDLMLPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           LE+ ++++     +  P+I +TA     D       G + Y+ KP ++   +  ++    
Sbjct: 61  LEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117

Query: 122 E 122
            
Sbjct: 118 R 118


>gi|117926236|ref|YP_866853.1| response regulator receiver protein [Magnetococcus sp. MC-1]
 gi|117609992|gb|ABK45447.1| response regulator receiver protein [Magnetococcus sp. MC-1]
          Length = 365

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 56/122 (45%), Gaps = 1/122 (0%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++V+D+ +++      +   G+  +   +G + +    Q +P +++MD+ +  + G
Sbjct: 1   MAKILVVDDDPMSLMHLEYFLAQQGHEVVTAADGHQGVAAFEQIQPQLVLMDVMMPNMDG 60

Query: 62  LEITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T  IK  S  +  +PV+ +T  A +         G + +I+KP    I    I  ++
Sbjct: 61  YTATGHIKSSSADRNQVPVLFLTGIADQTMLAHCLACGGDDFITKPFDNIILKARIDAWL 120

Query: 121 GE 122
             
Sbjct: 121 RR 122


>gi|329938393|ref|ZP_08287818.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302366|gb|EGG46257.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 289

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +V+++ED++       + +   G+   + R G E L        D++++D+ L ++ G+E
Sbjct: 2   RVLLIEDDDRVAGPLTEGLGRFGFTVDRARTGAEGLAA---GACDMVLLDLGLPDMDGIE 58

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + ++      ++P+I +TA + + D     + G + Y+SKP  +   +  I+     +
Sbjct: 59  VCRALR---LRSQVPIIMITARSDEVDRVLGLEIGADDYVSKPFGVRELIARIRAVTRRS 115


>gi|319938272|ref|ZP_08012669.1| two-component system transcriptional regulator [Coprobacillus sp.
           29_1]
 gi|319806565|gb|EFW03223.1| two-component system transcriptional regulator [Coprobacillus sp.
           29_1]
          Length = 219

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED +   +L R  +  +GY      +G +A +L      D+I++DI L  I G
Sbjct: 1   MNKILVVEDEKTISELIRINLVDTGYECQCVYDGKQAADLIENENFDLILLDIMLPIIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E+ + IK      +IPVI +TA A   +  +  K G E YI KP  +   +  ++  + 
Sbjct: 61  YELIEYIK----PFDIPVIFLTAKADVKERVKGLKLGAEDYIIKPFEIIELLARVEAVLR 116

Query: 122 E 122
            
Sbjct: 117 R 117


>gi|317473954|ref|ZP_07933233.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316909796|gb|EFV31471.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 245

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++V+D E   ++ +  +E  GY+     +  EAL        +++++D+ + EISG +
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYVVDTANSAEEAL-KLDISAYNLLLLDVMMGEISGFK 63

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           +   +K+D +  ++P+I +TA   + D       G + YISKP SL      +K  +  
Sbjct: 64  MASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122


>gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6]
 gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1306

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++++ EDN +N K+    +   GY A    NG+E L+   + + DV++MD+Q+ E+ GLE
Sbjct: 1051 RILLAEDNVVNQKVATKTLAKLGYRADVAANGLEVLDALARQRYDVVLMDVQMPELDGLE 1110

Query: 64   ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
             +++I+ +      P +IA+TA AM+ D +     G + YISKP+ +   +  + +  G 
Sbjct: 1111 ASRRIRNEIATVRQPRIIAMTANAMQSDRDLCIAAGMDDYISKPVRIEELVAALSR--GR 1168

Query: 123  A 123
            A
Sbjct: 1169 A 1169



 Score = 96.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEIS 60
            K +++V+DNE N ++  +  E+ G       +G E L+    +    D+ I+D+Q+  + 
Sbjct: 906  KHLLVVDDNETNRRILTNQAESWGMRVHVFASGPEVLDWLHTQDDPVDIAILDMQMPGMD 965

Query: 61   GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            G ++ + I       +IP++ +T+   +   E + +G     ++KPI  +   +T+   +
Sbjct: 966  GSQLAEVIHTTPATADIPLVLLTSLGRR--VEDLVQGNFVTSLTKPIKAAQLYQTLLAIL 1023

Query: 121  GE 122
            G+
Sbjct: 1024 GK 1025


>gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 217

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + K+++VED      L +  +  S Y      NG +ALE       D+I++D+ L +I G
Sbjct: 1   MIKILVVEDELPISNLIKLNLNMSNYECKTAFNGEDALEEIENDSFDLILLDVMLPKIDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             + ++IK       IPVI +TA     D+    + G + YI+KP      +  I   + 
Sbjct: 61  FTLLEKIKPLG----IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLR 116


>gi|302555751|ref|ZP_07308093.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302473369|gb|EFL36462.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1424

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62
             V+ V+D+  N+     ++E  G   L   NG + +++   H    +++MD+ + E+ G 
Sbjct: 1305 TVLAVDDDARNLFALSGILELHGLRVLHAENGRKGIDILTAHPEIRLVLMDVMMPEMDGY 1364

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
              T +I++  E  ++P++AVTA AM GD E+    G   Y++KP+     +  +++++
Sbjct: 1365 AATAEIRKMPEYHDLPIVAVTAKAMPGDREKSLASGASDYVTKPVDAGDLIACVRRWL 1422


>gi|254163333|ref|YP_003046441.1| osmolarity response regulator [Escherichia coli B str. REL606]
 gi|253975234|gb|ACT40905.1| osmolarity response regulator [Escherichia coli B str. REL606]
          Length = 239

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++V+D+     L    +   G+      N  +   L  +    ++++D+ L    GL I
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            ++++  S    +P+I VTA   + D     + G + YI KP +    +  I+  +  
Sbjct: 67  CRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122


>gi|229016308|ref|ZP_04173254.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
 gi|229022547|ref|ZP_04179077.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228738742|gb|EEL89208.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228744955|gb|EEL95011.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
          Length = 896

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ +E      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKNNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L E+P+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMEHIRMNLGLHEVPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|228953050|ref|ZP_04115111.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229079910|ref|ZP_04212442.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228703494|gb|EEL55948.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228806668|gb|EEM53226.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 214

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 8   VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67
           VED++   +L +  + T  Y  +   +G+E +    +   D+I++D+ +  ++G E++K 
Sbjct: 2   VEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSKM 61

Query: 68  IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           I+  S    +P+I +TA   + D+ +    G + YI+KP S  + +  ++  +  +
Sbjct: 62  IRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 114


>gi|224540566|ref|ZP_03681105.1| hypothetical protein BACCELL_05480 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224517816|gb|EEF86921.1| hypothetical protein BACCELL_05480 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1337

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 4    KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            K++IVEDN+   +  R+ +    Y      +G +ALE+ +++ P++II DI + E+ G E
Sbjct: 1078 KILIVEDNDELREYLRNTLSDD-YNIQVCSDGKQALEIVKEYMPNMIISDIMMPEMRGDE 1136

Query: 64   ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            +   +K D E   IP+I +TA     +     K G + YI KP ++ I   TI   +
Sbjct: 1137 LCHVLKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATISNIL 1193


>gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 225

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           +++++ED +         ++  GY      +G E L   +    D+II+DI L +I G+ 
Sbjct: 2   RILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASYDLIILDIMLPKIDGIT 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + K ++      + PV+ +TA     D       G + Y+ KP S    +  ++  +  
Sbjct: 62  LLKLVRNKGV--QTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRR 118


>gi|171058148|ref|YP_001790497.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775593|gb|ACB33732.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1135

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
             ++++ EDN+++ ++   ++   G +    R+G EA+ LA+    DV++MD+Q+  + GL
Sbjct: 906  ARILLAEDNDVSREVAVAILHGVGLLVDTARDGREAVALAQAGAYDVVLMDMQMPALDGL 965

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121
            E T  I+        P++A+TA A   D       G   +I+KPI       T+ K++  
Sbjct: 966  EATLAIRALPGWDSTPILALTANAFDDDRRACEAAGMNDFIAKPIDADALYATLLKWLVR 1025

Query: 122  EA 123
             A
Sbjct: 1026 RA 1027


>gi|153867938|ref|ZP_01998111.1| two component system response regulator [Beggiatoa sp. SS]
 gi|152144742|gb|EDN71889.1| two component system response regulator [Beggiatoa sp. SS]
          Length = 258

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62
            ++ V+D  +N+++  +L+    Y       G E  EL  Q  KPD+I++DI + +++G 
Sbjct: 25  TILAVDDEPVNLQVVTNLLSLENYTVKTVMGGAETFELLEQGEKPDLILLDIMMPKMTGY 84

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           E+ ++++E     E+P++ +TA     D       G   YI+KP+S +  +  IK ++
Sbjct: 85  EVCQKLREQYSATELPIMLLTAKNQVSDLVEGLNVGANDYITKPVSKNELLARIKTHL 142


>gi|149278618|ref|ZP_01884754.1| two component transcriptional regulator, winged helix family
           protein [Pedobacter sp. BAL39]
 gi|149230613|gb|EDM35996.1| two component transcriptional regulator, winged helix family
           protein [Pedobacter sp. BAL39]
          Length = 234

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++VED +  +   +  +E  GY     ++G  AL++ ++ + ++II+D+ L E+ G +
Sbjct: 6   RILLVEDEDHLLDAIKLNLELEGYKVHAVKDGKTALKVFKEERFNLIILDVMLPEMDGFQ 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + + I+   E  E+P++ +TA     D     K G + Y+ KP +L   +  +   +  +
Sbjct: 66  VCETIR--LENTEVPILFLTAKNTSEDRVMGLKKGADDYLVKPFNLEELILRVGILVKRS 123


>gi|108798410|ref|YP_638607.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119867507|ref|YP_937459.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768829|gb|ABG07551.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119693596|gb|ABL90669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 265

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           + ++V+D     ++    +E   + A+ T NG +A+ +AR+  PDV+I+DI L  I GLE
Sbjct: 33  RALVVDDEAPLAEVVASYLEREHFEAIVTGNGADAITIARELDPDVVILDIGLPGIDGLE 92

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + +Q++      +  V+ +TA   + D       G + YI+KP S    +  I+  +  
Sbjct: 93  VCRQLR---TFSDAYVVMLTARDTEMDTILGLTVGADDYITKPFSPRELVARIRAMLRR 148


>gi|77461528|ref|YP_351035.1| response regulator receiver domain-containing protein [Pseudomonas
           fluorescens Pf0-1]
 gi|77385531|gb|ABA77044.1| type IV pilus response regulator/twitching mobility protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 121

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 68/119 (57%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           + +++IV+D+   M     ++E  G+  L+  NG + + LARQ KPD ++MDI +  ++G
Sbjct: 1   MARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            + T+Q+ +D+E   IPVI +T    + D+    + G   Y++KP+     ++T+   +
Sbjct: 61  FQATRQLTKDAETSHIPVIIITTKDQETDKVWGTRQGARDYLTKPVDEDTLIKTLNNVL 119


>gi|260060660|ref|YP_003193740.1| two-component system sensor histidine kinase/response regulator
           [Robiginitalea biformata HTCC2501]
 gi|88784790|gb|EAR15959.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one component system') [Robiginitalea biformata
           HTCC2501]
          Length = 969

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           +++VEDN    +   ++++   Y  L   +G +   +A +H PDV++ D+ +    G E+
Sbjct: 722 ILLVEDNADLRRFVGEVLQ-EKYRVLYAEDGFQGERMAIEHIPDVVVSDVMMPRKDGYEL 780

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
              +K +++   IP+I +TA A + ++      G EAY++KP      +  I+  +G 
Sbjct: 781 CHALKTNTKTSHIPIILLTARAGQENKMEGLFQGAEAYLTKPFEARELLVRIRNLMGR 838


>gi|15599296|ref|NP_252790.1| BfmR [Pseudomonas aeruginosa PAO1]
 gi|107103618|ref|ZP_01367536.1| hypothetical protein PaerPA_01004688 [Pseudomonas aeruginosa PACS2]
 gi|254236989|ref|ZP_04930312.1| hypothetical protein PACG_03014 [Pseudomonas aeruginosa C3719]
 gi|254242786|ref|ZP_04936108.1| hypothetical protein PA2G_03552 [Pseudomonas aeruginosa 2192]
 gi|9950302|gb|AAG07488.1|AE004826_6 BfmR [Pseudomonas aeruginosa PAO1]
 gi|126168920|gb|EAZ54431.1| hypothetical protein PACG_03014 [Pseudomonas aeruginosa C3719]
 gi|126196164|gb|EAZ60227.1| hypothetical protein PA2G_03552 [Pseudomonas aeruginosa 2192]
          Length = 246

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +L  + ++ +G       +G +       +  D+I++DI +    GL 
Sbjct: 6   HILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTVDLIVLDIMMPGDDGLL 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
           + ++++   + +  PV+ +TA   + D     + G + Y++KP S    +  I   +  
Sbjct: 66  LCRELR-VGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123


>gi|323136078|ref|ZP_08071161.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322399169|gb|EFY01688.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 232

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  + +V+D+   +      +E  GY      +G +AL+  R + PD+ I DI++  + G
Sbjct: 1   MPTIALVDDDRNILTSVSIALEGEGYRVQTYTDGAQALDGLRANPPDLAIFDIKMPRMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
           +E+ +++++ S   +IPVI +T+   + DE    K G + +I KP S  + +E +K  + 
Sbjct: 61  MELLRRLRQKS---DIPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILR 117

Query: 122 EA 123
            A
Sbjct: 118 RA 119


>gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
 gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
          Length = 229

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 2   LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
           +  +++V+D E  + + R  +E  G+  L   NG  AL+L +    D++++DI + ++ G
Sbjct: 1   MDTILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMPKMDG 60

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
             +  +I+E    ++ P + ++A   + +       G + Y+SKP S    +  +K  + 
Sbjct: 61  HTLVMEIQELE--KDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILR 118

Query: 122 EA 123
            +
Sbjct: 119 RS 120


>gi|237713735|ref|ZP_04544216.1| LOW QUALITY PROTEIN: two-component system sensor histidine
            kinase/response regulator [Bacteroides sp. D1]
 gi|262409359|ref|ZP_06085902.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides sp.
            2_1_22]
 gi|229446182|gb|EEO51973.1| LOW QUALITY PROTEIN: two-component system sensor histidine
            kinase/response regulator [Bacteroides sp. D1]
 gi|262352811|gb|EEZ01908.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides sp.
            2_1_22]
          Length = 1205

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3    KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
            ++++IVEDN+         +    Y      NG EAL +  ++KP+++I DI + E+ G 
Sbjct: 940  RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 998

Query: 63   EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121
            E+ + IK + E   IPVI +TA   + D     + G + Y+ KP ++ I    +   +  
Sbjct: 999  ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1058

Query: 122  EA 123
             A
Sbjct: 1059 RA 1060


>gi|228899677|ref|ZP_04063929.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
 gi|228859957|gb|EEN04365.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
          Length = 896

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 776 KTILIVDDDHRNIFALQNALKKQNANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 836 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894


>gi|229078308|ref|ZP_04210872.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
 gi|228704983|gb|EEL57405.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
          Length = 883

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61
           K ++IV+D+  N+   ++ ++      +  +NG+E LE+ + +   D+I+MDI +  + G
Sbjct: 763 KTILIVDDDHRNIFALQNALKKQNANIITAQNGLECLEILKSNTNIDLILMDIMMPNMDG 822

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
            E  + I+ +  L EIP+IA+TA AM  D+E+    G   YISKP++L      +  ++
Sbjct: 823 YETMENIRMNLGLNEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881


>gi|220924442|ref|YP_002499744.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949049|gb|ACL59441.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 900

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML ++++ +DN +N ++ R L+E+ G+      +G  A++  R    D+++MD+Q+    
Sbjct: 764 MLARILLADDNAINREIVRRLLESVGHAVEVVEDGAAAIQAVRNAAYDLVLMDVQMPGTD 823

Query: 61  GLEITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           GL  T++I+        +P+IA+TA  +       R  G + +I KP         + ++
Sbjct: 824 GLTATRRIRMLPGAPARVPIIALTANVLPSQVAEFRAAGMDDHIGKPFKREDLFAAVARW 883

Query: 120 IG 121
            G
Sbjct: 884 CG 885


>gi|150025871|ref|YP_001296697.1| two-component system response regulatory protein RprY
           [Flavobacterium psychrophilum JIP02/86]
 gi|149772412|emb|CAL43892.1| Two-component system response regulatory protein RprY
           [Flavobacterium psychrophilum JIP02/86]
          Length = 233

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           KK+++VED+     + RD +  + +     +NGME  E  ++   D+ I+D+ +    G 
Sbjct: 5   KKILLVEDDPNFGSILRDYLSMNDFEVTLAKNGMEGFEKFKKDNYDLCILDVMMPYKDGY 64

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122
            + K+I+E +  +E+P++ +TA +MK D  +  K G + Y++KP    + +  IK  I  
Sbjct: 65  TLAKEIREKN--KEVPIVFLTAKSMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQR 122


>gi|73538366|ref|YP_298733.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 1152

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
           ++++ +DN    +    L+    Y      +G +AL        ++++ D+ +  + GL 
Sbjct: 642 RILVADDNADMRQYLARLLSKD-YEVELANDGQDALARIHARSVELLLTDVMMPGLDGLG 700

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           +   ++ D +  ++P+I ++A A +       + G + Y++KP S    +  +  ++
Sbjct: 701 LLHALRTDPKTADLPIIMLSARAGEESLAEGVEAGADDYLTKPFSARELLARVGTHV 757



 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 68/114 (59%)

Query: 5    VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
            +++V+D++ +      L++T G+      +G EA+  A Q++PDVI+MDI L  I+G E 
Sbjct: 1032 ILVVDDDQDSAWSLAALLDTCGHRVQTAHDGFEAIATAEQYRPDVILMDIGLPTITGHET 1091

Query: 65   TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118
             ++I+ +S   +I +IAV+ +  + D  R  + G +A++ KP+ L   +  +++
Sbjct: 1092 ARRIRAESWGVDIVLIAVSGWGQEEDRRRSDEAGFDAHLVKPVDLDALLGLLQR 1145


>gi|86139704|ref|ZP_01058271.1| DNA-binding response regulator [Roseobacter sp. MED193]
 gi|85823595|gb|EAQ43803.1| DNA-binding response regulator [Roseobacter sp. MED193]
          Length = 240

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            ++IV+D+    +     +E +G      R+ +E          D++++D+ +    GL 
Sbjct: 6   HILIVDDHAQIRESVARFLEKNGMRTTVARDAVEMDAKLATGHFDLLVLDVMMPGEDGLS 65

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123
           + +++   +   ++P+I +TA   + D     + G + Y++KP +    +  IK  +  +
Sbjct: 66  VCRRL---APEGDLPIIMLTALGEETDRIVGLEIGADDYLAKPFNPRELLARIKSVLRRS 122


>gi|65320484|ref|ZP_00393443.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 226

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60
           ML +V+IVED +    +    +    Y      NG +AL+       D+I++DI +  I+
Sbjct: 1   MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
           GL++ ++++ D+      V+ +TA     D  +    G + Y+ KP +    +  I+  +
Sbjct: 61  GLQVLQKLRADNHTTS--VLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118

Query: 121 GE 122
             
Sbjct: 119 RR 120


>gi|330878816|gb|EGH12965.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 410

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61
           +K+++V+D+  N+      +E  G +    RNG+EA+    +    D+++MD+ + E+ G
Sbjct: 286 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 345

Query: 62  LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121
            E T +I++D   +++P+IAVTA AMK D+ER  + G   Y++KPI L      I+ ++ 
Sbjct: 346 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 405

Query: 122 E 122
           +
Sbjct: 406 K 406



 Score = 88.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 5   VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64
           ++++ED     ++  DL    GY  L      E   LA ++ PD I++D++L + SGL +
Sbjct: 20  ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 79

Query: 65  TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
            +++KE +  + IPV  ++   ++  +E     G   Y  KP +     +   K 
Sbjct: 80  LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 131



 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62
           K++++VED+ L       LI              EAL+L R++  D +I+D++L ++ G 
Sbjct: 140 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 199

Query: 63  EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93
           E+ K++  +      PVI  T   M  DEE 
Sbjct: 200 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 230


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.218    0.766 

Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,457,170,338
Number of Sequences: 14124377
Number of extensions: 172780462
Number of successful extensions: 723877
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 77660
Number of HSP's successfully gapped in prelim test: 6496
Number of HSP's that attempted gapping in prelim test: 527988
Number of HSP's gapped (non-prelim): 91861
length of query: 123
length of database: 4,842,793,630
effective HSP length: 89
effective length of query: 34
effective length of database: 3,585,724,077
effective search space: 121914618618
effective search space used: 121914618618
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.7 bits)
S2: 77 (33.6 bits)